Multiple sequence alignment - TraesCS2A01G500400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G500400 chr2A 100.000 5655 0 0 1 5655 729292649 729298303 0.000000e+00 10443.0
1 TraesCS2A01G500400 chr2B 87.493 3430 225 91 289 3616 722629699 722633026 0.000000e+00 3770.0
2 TraesCS2A01G500400 chr2B 89.730 1295 87 27 3725 5016 722633116 722634367 0.000000e+00 1613.0
3 TraesCS2A01G500400 chr2B 84.127 504 38 21 5116 5589 722634397 722634888 3.110000e-122 449.0
4 TraesCS2A01G500400 chr2B 97.727 44 1 0 5589 5632 722637192 722637235 6.080000e-10 76.8
5 TraesCS2A01G500400 chr2B 97.561 41 1 0 5116 5156 33756697 33756737 2.830000e-08 71.3
6 TraesCS2A01G500400 chr2B 97.561 41 1 0 5116 5156 33807839 33807879 2.830000e-08 71.3
7 TraesCS2A01G500400 chr2D 88.073 3228 173 93 7 3134 595160976 595164091 0.000000e+00 3633.0
8 TraesCS2A01G500400 chr2D 95.497 533 16 1 4451 4975 595165492 595166024 0.000000e+00 845.0
9 TraesCS2A01G500400 chr2D 88.144 641 47 19 3804 4440 595164807 595165422 0.000000e+00 736.0
10 TraesCS2A01G500400 chr2D 88.028 568 44 14 3203 3755 595164097 595164655 0.000000e+00 651.0
11 TraesCS2A01G500400 chr2D 84.590 305 29 7 5111 5413 595166115 595166403 2.580000e-73 287.0
12 TraesCS2A01G500400 chr5B 89.286 56 5 1 5111 5166 480246445 480246499 1.020000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G500400 chr2A 729292649 729298303 5654 False 10443.0 10443 100.00000 1 5655 1 chr2A.!!$F1 5654
1 TraesCS2A01G500400 chr2B 722629699 722637235 7536 False 1477.2 3770 89.76925 289 5632 4 chr2B.!!$F3 5343
2 TraesCS2A01G500400 chr2D 595160976 595166403 5427 False 1230.4 3633 88.86640 7 5413 5 chr2D.!!$F1 5406

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 477 0.250338 GTTTGGTTGGAGAGGTCGCT 60.250 55.0 0.00 0.0 0.00 4.93 F
1392 1507 0.179045 CCTTGGGATAGGCCAAGACG 60.179 60.0 5.01 0.0 44.12 4.18 F
2226 2377 0.036388 TCCGAGGAGGCAACAACATC 60.036 55.0 0.00 0.0 40.77 3.06 F
2878 3048 0.692419 CCTGGTCAGGTATGCCTCCT 60.692 60.0 0.00 0.0 44.97 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2018 2162 0.030235 CGGTGCTCGATCCGTCATAA 59.970 55.000 13.25 0.00 42.43 1.90 R
3198 3369 1.079197 CAGCACATGCACCTACCGA 60.079 57.895 6.64 0.00 45.16 4.69 R
4050 4357 1.006571 TGTCAACCTCCGCTCGTTC 60.007 57.895 0.00 0.00 0.00 3.95 R
4714 5083 0.387622 GAATGGACGACGGACGAACA 60.388 55.000 6.90 5.41 45.77 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.572290 GTGCAACCTGGAGTAGTTTGT 58.428 47.619 0.00 0.00 31.94 2.83
51 52 1.187087 TGGTTTCCACTTTTGCCGTT 58.813 45.000 0.00 0.00 0.00 4.44
69 70 3.357897 CGTTCTACGACGGAGGATAAAC 58.642 50.000 7.36 3.31 46.05 2.01
70 71 3.064545 CGTTCTACGACGGAGGATAAACT 59.935 47.826 7.36 0.00 46.05 2.66
72 73 2.868583 TCTACGACGGAGGATAAACTCG 59.131 50.000 7.36 0.00 38.39 4.18
74 75 0.594284 CGACGGAGGATAAACTCGCC 60.594 60.000 0.00 0.00 38.39 5.54
75 76 0.745468 GACGGAGGATAAACTCGCCT 59.255 55.000 0.00 0.00 38.39 5.52
76 77 0.460311 ACGGAGGATAAACTCGCCTG 59.540 55.000 0.00 0.00 38.39 4.85
77 78 0.876342 CGGAGGATAAACTCGCCTGC 60.876 60.000 0.00 0.00 38.39 4.85
78 79 0.466124 GGAGGATAAACTCGCCTGCT 59.534 55.000 0.00 0.00 37.20 4.24
79 80 1.687123 GGAGGATAAACTCGCCTGCTA 59.313 52.381 0.00 0.00 37.20 3.49
80 81 2.288518 GGAGGATAAACTCGCCTGCTAG 60.289 54.545 0.00 0.00 37.20 3.42
81 82 1.689273 AGGATAAACTCGCCTGCTAGG 59.311 52.381 0.00 0.00 38.80 3.02
143 144 1.002257 TACAGGCAGCCCATGTGTG 60.002 57.895 15.18 5.65 0.00 3.82
144 145 3.755628 CAGGCAGCCCATGTGTGC 61.756 66.667 8.22 3.22 36.42 4.57
145 146 3.975591 AGGCAGCCCATGTGTGCT 61.976 61.111 8.22 3.94 37.37 4.40
146 147 2.045045 GGCAGCCCATGTGTGCTA 60.045 61.111 0.00 0.00 35.69 3.49
147 148 2.409870 GGCAGCCCATGTGTGCTAC 61.410 63.158 0.00 2.05 35.69 3.58
148 149 2.409870 GCAGCCCATGTGTGCTACC 61.410 63.158 1.82 0.00 35.69 3.18
188 189 0.598562 CAGTGTCACTGCTAGTCCGT 59.401 55.000 19.69 0.00 39.62 4.69
258 259 4.802051 CCATGACAGGCCACCCGG 62.802 72.222 5.01 0.00 35.76 5.73
273 274 2.202388 CGGCGCAAAGACATGCTG 60.202 61.111 10.83 0.00 44.21 4.41
358 382 1.130613 GTCAATGAGACACGCACGC 59.869 57.895 0.00 0.00 46.77 5.34
394 423 3.952675 CTTGCGTTGCGGTGCAGT 61.953 61.111 0.00 0.00 42.89 4.40
395 424 4.249020 TTGCGTTGCGGTGCAGTG 62.249 61.111 0.00 0.00 42.89 3.66
398 427 4.671549 CGTTGCGGTGCAGTGCAG 62.672 66.667 20.42 9.23 42.89 4.41
448 477 0.250338 GTTTGGTTGGAGAGGTCGCT 60.250 55.000 0.00 0.00 0.00 4.93
452 481 1.376037 GTTGGAGAGGTCGCTTGGG 60.376 63.158 0.00 0.00 0.00 4.12
453 482 3.254024 TTGGAGAGGTCGCTTGGGC 62.254 63.158 0.00 0.00 0.00 5.36
454 483 3.394836 GGAGAGGTCGCTTGGGCT 61.395 66.667 0.00 0.00 36.09 5.19
516 553 3.855255 TTCATTTCATATCCGGAGCCA 57.145 42.857 11.34 0.00 0.00 4.75
574 626 3.987404 CCTTCTTTGGGCAGACGG 58.013 61.111 0.00 0.00 0.00 4.79
584 636 3.660111 GCAGACGGCGCTTGGTTT 61.660 61.111 6.90 0.00 0.00 3.27
585 637 2.556287 CAGACGGCGCTTGGTTTC 59.444 61.111 6.90 0.00 0.00 2.78
586 638 1.961277 CAGACGGCGCTTGGTTTCT 60.961 57.895 6.90 0.00 0.00 2.52
587 639 1.961277 AGACGGCGCTTGGTTTCTG 60.961 57.895 6.90 0.00 0.00 3.02
588 640 2.966309 GACGGCGCTTGGTTTCTGG 61.966 63.158 6.90 0.00 0.00 3.86
589 641 4.404654 CGGCGCTTGGTTTCTGGC 62.405 66.667 7.64 0.00 0.00 4.85
590 642 4.056125 GGCGCTTGGTTTCTGGCC 62.056 66.667 7.64 0.00 0.00 5.36
591 643 4.056125 GCGCTTGGTTTCTGGCCC 62.056 66.667 0.00 0.00 0.00 5.80
592 644 3.737172 CGCTTGGTTTCTGGCCCG 61.737 66.667 0.00 0.00 0.00 6.13
593 645 3.373565 GCTTGGTTTCTGGCCCGG 61.374 66.667 0.00 0.00 0.00 5.73
723 775 4.204012 TCCCCCGCAATCTAAATTACTTG 58.796 43.478 0.00 0.00 0.00 3.16
751 808 1.282157 GGCCTCCGCTCCCATAAATAT 59.718 52.381 0.00 0.00 34.44 1.28
752 809 2.504175 GGCCTCCGCTCCCATAAATATA 59.496 50.000 0.00 0.00 34.44 0.86
754 811 4.566907 GGCCTCCGCTCCCATAAATATAAA 60.567 45.833 0.00 0.00 34.44 1.40
756 813 6.354130 GCCTCCGCTCCCATAAATATAAATA 58.646 40.000 0.00 0.00 0.00 1.40
757 814 6.826741 GCCTCCGCTCCCATAAATATAAATAA 59.173 38.462 0.00 0.00 0.00 1.40
758 815 7.502561 GCCTCCGCTCCCATAAATATAAATAAT 59.497 37.037 0.00 0.00 0.00 1.28
775 832 4.992381 ATAATATTTCGAGCAAGGTCGC 57.008 40.909 16.00 0.00 39.90 5.19
777 834 0.535335 TATTTCGAGCAAGGTCGCCT 59.465 50.000 16.00 6.31 39.90 5.52
823 888 2.981909 TCTCGTCCGCGTCCTTGT 60.982 61.111 4.92 0.00 39.49 3.16
824 889 2.504244 CTCGTCCGCGTCCTTGTC 60.504 66.667 4.92 0.00 39.49 3.18
825 890 3.966026 CTCGTCCGCGTCCTTGTCC 62.966 68.421 4.92 0.00 39.49 4.02
833 898 1.587933 GCGTCCTTGTCCGTCTCTCT 61.588 60.000 0.00 0.00 0.00 3.10
841 906 0.523966 GTCCGTCTCTCTGGTGAGTG 59.476 60.000 0.00 0.00 40.98 3.51
843 908 1.214062 CGTCTCTCTGGTGAGTGCC 59.786 63.158 0.00 0.00 40.98 5.01
870 935 2.011947 TCCTCGATGCAATGCTTCTTG 58.988 47.619 17.14 10.19 31.76 3.02
873 938 2.011947 TCGATGCAATGCTTCTTGGAG 58.988 47.619 17.14 3.69 31.76 3.86
874 939 1.533338 CGATGCAATGCTTCTTGGAGC 60.533 52.381 17.14 0.00 43.00 4.70
880 945 2.747855 GCTTCTTGGAGCACCCGG 60.748 66.667 0.00 0.00 42.25 5.73
881 946 2.747855 CTTCTTGGAGCACCCGGC 60.748 66.667 0.00 0.00 45.30 6.13
900 965 2.159599 GGCTTCTTCAATCTCTGTTGCG 60.160 50.000 0.00 0.00 0.00 4.85
904 969 3.727726 TCTTCAATCTCTGTTGCGTTCA 58.272 40.909 0.00 0.00 0.00 3.18
905 970 4.318332 TCTTCAATCTCTGTTGCGTTCAT 58.682 39.130 0.00 0.00 0.00 2.57
906 971 4.756642 TCTTCAATCTCTGTTGCGTTCATT 59.243 37.500 0.00 0.00 0.00 2.57
907 972 4.668576 TCAATCTCTGTTGCGTTCATTC 57.331 40.909 0.00 0.00 0.00 2.67
936 1007 2.812178 GCAATGGCGCTGCTTTGG 60.812 61.111 12.41 0.00 36.84 3.28
1266 1360 4.796231 ACTGCTACGCGCCCTTCG 62.796 66.667 5.73 0.00 42.12 3.79
1284 1378 4.817063 CCGCAAATGTCGCCGCTG 62.817 66.667 0.00 0.00 0.00 5.18
1297 1391 1.901650 GCCGCTGTTTTCTCGTCAGG 61.902 60.000 0.00 0.00 0.00 3.86
1301 1395 1.221466 CTGTTTTCTCGTCAGGCGCA 61.221 55.000 10.83 0.00 41.07 6.09
1304 1398 0.320334 TTTTCTCGTCAGGCGCATCA 60.320 50.000 10.83 0.00 41.07 3.07
1319 1434 2.802247 CGCATCAATCTTCGCTTCCATA 59.198 45.455 0.00 0.00 0.00 2.74
1390 1505 0.918983 CACCTTGGGATAGGCCAAGA 59.081 55.000 5.01 0.00 44.12 3.02
1392 1507 0.179045 CCTTGGGATAGGCCAAGACG 60.179 60.000 5.01 0.00 44.12 4.18
1437 1553 8.952278 ACTAGATTAGATTAGATTAGCACGGAG 58.048 37.037 0.00 0.00 0.00 4.63
1438 1554 7.164230 AGATTAGATTAGATTAGCACGGAGG 57.836 40.000 0.00 0.00 0.00 4.30
1490 1627 9.900710 CTTAAAGTCGATACTCACTGCTAATAT 57.099 33.333 0.00 0.00 33.75 1.28
1494 1631 8.046294 AGTCGATACTCACTGCTAATATTAGG 57.954 38.462 21.30 10.09 0.00 2.69
1495 1632 7.883833 AGTCGATACTCACTGCTAATATTAGGA 59.116 37.037 21.30 18.25 0.00 2.94
1500 1637 7.793927 ACTCACTGCTAATATTAGGAAAAGC 57.206 36.000 21.30 10.88 30.51 3.51
1632 1772 3.976339 GGAGTCGATCCTGTCATGG 57.024 57.895 6.63 0.00 45.64 3.66
1690 1830 8.082242 GCATTTTACTGTTAACAAATCTGACCT 58.918 33.333 10.03 0.00 0.00 3.85
1695 1835 7.881775 ACTGTTAACAAATCTGACCTTTTCT 57.118 32.000 10.03 0.00 0.00 2.52
1716 1860 6.677781 TCTCTTTTTCTTTCTTTCTTCGCA 57.322 33.333 0.00 0.00 0.00 5.10
1719 1863 7.857885 TCTCTTTTTCTTTCTTTCTTCGCATTC 59.142 33.333 0.00 0.00 0.00 2.67
1775 1919 1.073177 AAATCAAGGGTACGCGTTCG 58.927 50.000 20.78 0.00 42.43 3.95
1779 1923 1.064505 TCAAGGGTACGCGTTCGATAG 59.935 52.381 20.78 4.40 39.41 2.08
1787 1931 1.846648 GCGTTCGATAGCGTGATGG 59.153 57.895 0.00 0.00 38.98 3.51
1822 1966 5.984233 TCGATGTTTCCTTGCATACATAC 57.016 39.130 0.00 0.00 31.76 2.39
1831 1975 7.843490 TTCCTTGCATACATACTTTGTACTC 57.157 36.000 0.00 0.00 43.46 2.59
1833 1977 5.276868 CCTTGCATACATACTTTGTACTCGC 60.277 44.000 0.00 0.00 43.46 5.03
1834 1978 5.006153 TGCATACATACTTTGTACTCGCT 57.994 39.130 0.00 0.00 43.46 4.93
1835 1979 5.041287 TGCATACATACTTTGTACTCGCTC 58.959 41.667 0.00 0.00 43.46 5.03
1837 1981 5.174035 GCATACATACTTTGTACTCGCTCTG 59.826 44.000 0.00 0.00 43.46 3.35
1839 1983 5.892160 ACATACTTTGTACTCGCTCTGTA 57.108 39.130 0.00 0.00 36.57 2.74
1840 1984 5.881447 ACATACTTTGTACTCGCTCTGTAG 58.119 41.667 0.00 0.00 36.57 2.74
1862 2006 3.321497 CGTTCTTATAGGGATGAGCAGC 58.679 50.000 0.00 0.00 0.00 5.25
1866 2010 3.517100 TCTTATAGGGATGAGCAGCCATC 59.483 47.826 7.12 12.95 38.99 3.51
1867 2011 1.738474 ATAGGGATGAGCAGCCATCA 58.262 50.000 19.55 6.52 43.49 3.07
1870 2014 1.217183 AGGGATGAGCAGCCATCATTT 59.783 47.619 19.55 6.99 43.49 2.32
2009 2153 2.424733 GGACCCGTCAGAGCTACCC 61.425 68.421 0.00 0.00 0.00 3.69
2018 2162 3.682718 CGTCAGAGCTACCCAAATGGAAT 60.683 47.826 0.00 0.00 37.39 3.01
2021 2165 6.064717 GTCAGAGCTACCCAAATGGAATTAT 58.935 40.000 0.00 0.00 33.67 1.28
2036 2180 2.440539 ATTATGACGGATCGAGCACC 57.559 50.000 1.84 0.00 0.00 5.01
2069 2213 4.262808 CCTGGAGAAGACAGTGAAGTCATT 60.263 45.833 0.00 0.00 40.98 2.57
2080 2224 8.908903 AGACAGTGAAGTCATTCTATAGTAAGG 58.091 37.037 0.00 0.00 40.98 2.69
2089 2233 8.440771 AGTCATTCTATAGTAAGGGGGAAATTG 58.559 37.037 0.00 0.00 0.00 2.32
2169 2320 5.626955 GCTAACTCTGTTCATGTTTTTCTGC 59.373 40.000 0.00 0.00 0.00 4.26
2226 2377 0.036388 TCCGAGGAGGCAACAACATC 60.036 55.000 0.00 0.00 40.77 3.06
2239 2390 4.141287 CAACAACATCCTGGTACCTTTCA 58.859 43.478 14.36 0.00 0.00 2.69
2240 2391 4.657814 ACAACATCCTGGTACCTTTCAT 57.342 40.909 14.36 0.00 0.00 2.57
2241 2392 4.589908 ACAACATCCTGGTACCTTTCATC 58.410 43.478 14.36 0.00 0.00 2.92
2242 2393 4.289672 ACAACATCCTGGTACCTTTCATCT 59.710 41.667 14.36 0.00 0.00 2.90
2243 2394 4.494091 ACATCCTGGTACCTTTCATCTG 57.506 45.455 14.36 4.39 0.00 2.90
2244 2395 3.200825 ACATCCTGGTACCTTTCATCTGG 59.799 47.826 14.36 2.95 0.00 3.86
2245 2396 3.199442 TCCTGGTACCTTTCATCTGGA 57.801 47.619 14.36 5.15 0.00 3.86
2246 2397 2.838202 TCCTGGTACCTTTCATCTGGAC 59.162 50.000 14.36 0.00 0.00 4.02
2257 2408 2.279741 TCATCTGGACGTGCTTTATGC 58.720 47.619 8.99 0.00 43.25 3.14
2268 2419 6.293626 GGACGTGCTTTATGCTAATCATGAAT 60.294 38.462 0.00 0.00 43.37 2.57
2270 2421 8.153479 ACGTGCTTTATGCTAATCATGAATAA 57.847 30.769 0.00 0.00 43.37 1.40
2312 2463 7.389607 GGTCACTTTTACTGGTTACATGTGTAT 59.610 37.037 9.11 0.00 0.00 2.29
2313 2464 8.780249 GTCACTTTTACTGGTTACATGTGTATT 58.220 33.333 9.11 0.00 0.00 1.89
2314 2465 9.344772 TCACTTTTACTGGTTACATGTGTATTT 57.655 29.630 9.11 0.00 0.00 1.40
2319 2471 4.830046 ACTGGTTACATGTGTATTTTGGCA 59.170 37.500 9.11 0.00 0.00 4.92
2335 2487 5.821516 TTTGGCATGTTAGTTAATACGGG 57.178 39.130 0.00 0.00 0.00 5.28
2340 2492 6.038825 TGGCATGTTAGTTAATACGGGATTTG 59.961 38.462 0.00 0.00 0.00 2.32
2878 3048 0.692419 CCTGGTCAGGTATGCCTCCT 60.692 60.000 0.00 0.00 44.97 3.69
3098 3268 6.479001 CGAGGTACTTCGAACAATTATCCATT 59.521 38.462 21.63 0.00 41.55 3.16
3134 3304 5.183904 GCCTGATATCACAGAACTTTGGTTT 59.816 40.000 0.00 0.00 39.94 3.27
3136 3306 7.661040 CCTGATATCACAGAACTTTGGTTTTT 58.339 34.615 0.00 0.00 39.94 1.94
3176 3346 8.251750 TGAGAATATGGTTAAAAAGTCGACTG 57.748 34.615 20.85 0.00 0.00 3.51
3177 3347 7.333423 TGAGAATATGGTTAAAAAGTCGACTGG 59.667 37.037 20.85 0.00 0.00 4.00
3181 3352 5.238006 TGGTTAAAAAGTCGACTGGTTTG 57.762 39.130 26.26 0.00 0.00 2.93
3193 3364 5.346822 GTCGACTGGTTTGTTACATTATCGT 59.653 40.000 8.70 0.00 0.00 3.73
3195 3366 6.748658 TCGACTGGTTTGTTACATTATCGTAG 59.251 38.462 0.00 0.00 0.00 3.51
3198 3369 7.609056 ACTGGTTTGTTACATTATCGTAGACT 58.391 34.615 0.00 0.00 42.51 3.24
3201 3372 6.197842 GGTTTGTTACATTATCGTAGACTCGG 59.802 42.308 0.00 0.00 42.51 4.63
3216 3387 1.079197 TCGGTAGGTGCATGTGCTG 60.079 57.895 6.55 0.00 42.66 4.41
3241 3413 8.946085 TGTGAGTTTATGATTTATTCTGACACC 58.054 33.333 0.00 0.00 0.00 4.16
3316 3496 4.651503 AGATCCGATAACTGACCAAGTGAT 59.348 41.667 0.00 0.00 39.81 3.06
3327 3507 3.507233 TGACCAAGTGATCATCCTTTTGC 59.493 43.478 0.00 0.00 0.00 3.68
3330 3510 3.508793 CCAAGTGATCATCCTTTTGCTGT 59.491 43.478 0.00 0.00 0.00 4.40
3334 3514 6.690194 AGTGATCATCCTTTTGCTGTTATC 57.310 37.500 0.00 0.00 0.00 1.75
3336 3516 6.660521 AGTGATCATCCTTTTGCTGTTATCAA 59.339 34.615 0.00 0.00 0.00 2.57
3341 3521 8.761575 TCATCCTTTTGCTGTTATCAATTTTC 57.238 30.769 0.00 0.00 0.00 2.29
3342 3522 7.818930 TCATCCTTTTGCTGTTATCAATTTTCC 59.181 33.333 0.00 0.00 0.00 3.13
3345 3525 6.880529 CCTTTTGCTGTTATCAATTTTCCCAT 59.119 34.615 0.00 0.00 0.00 4.00
3347 3527 7.670009 TTTGCTGTTATCAATTTTCCCATTG 57.330 32.000 0.00 0.00 35.73 2.82
3378 3562 7.600752 GCACTTCTAATTATCATCCTACTCACC 59.399 40.741 0.00 0.00 0.00 4.02
3451 3635 7.294584 CCAAAACCAATCCAGGTATATTCCTA 58.705 38.462 0.00 0.00 42.25 2.94
3456 3640 9.629649 AACCAATCCAGGTATATTCCTATAAGA 57.370 33.333 0.00 0.00 42.25 2.10
3559 3743 4.340950 CCACACAAATTACAGGTTCCACTT 59.659 41.667 0.00 0.00 0.00 3.16
3616 3801 7.224753 ACTTCTACAATTATATCTTGCCGTGTG 59.775 37.037 0.00 0.00 0.00 3.82
3617 3802 6.578944 TCTACAATTATATCTTGCCGTGTGT 58.421 36.000 0.00 0.00 0.00 3.72
3618 3803 7.718525 TCTACAATTATATCTTGCCGTGTGTA 58.281 34.615 0.00 0.00 0.00 2.90
3619 3804 8.364894 TCTACAATTATATCTTGCCGTGTGTAT 58.635 33.333 0.00 0.00 0.00 2.29
3676 3876 9.686683 AAACATCAGAAAACCTATTATAGCTGT 57.313 29.630 0.00 0.00 0.00 4.40
3712 3912 5.147032 ACAATGGAGATTTTGTGGGAAGAA 58.853 37.500 0.00 0.00 34.87 2.52
3755 3955 8.918202 ACAGACAATGTTCCTTCAAATACTAA 57.082 30.769 0.00 0.00 39.96 2.24
3756 3956 9.003658 ACAGACAATGTTCCTTCAAATACTAAG 57.996 33.333 0.00 0.00 39.96 2.18
3757 3957 8.454106 CAGACAATGTTCCTTCAAATACTAAGG 58.546 37.037 0.00 0.00 43.11 2.69
3776 3976 2.378547 AGGTATTTCAAACAGGGCCTGA 59.621 45.455 38.99 16.85 35.18 3.86
3790 3990 0.953727 GCCTGAATGTGCAGTGTTGA 59.046 50.000 0.00 0.00 34.06 3.18
3798 3998 7.385752 CCTGAATGTGCAGTGTTGATTATTTTT 59.614 33.333 0.00 0.00 34.06 1.94
3881 4188 8.567285 ACTTATGGAGTAGTTTTCTCAATTGG 57.433 34.615 5.42 0.00 36.65 3.16
3888 4195 8.451748 GGAGTAGTTTTCTCAATTGGTTGATAC 58.548 37.037 5.42 1.62 43.08 2.24
3907 4214 3.559238 ACAGCTTGTCCTTAATTTGCG 57.441 42.857 0.00 0.00 0.00 4.85
3948 4255 7.319646 TCTTTTCTTGTTGTTGCAAATGTAGT 58.680 30.769 0.00 0.00 0.00 2.73
3952 4259 6.491394 TCTTGTTGTTGCAAATGTAGTACAC 58.509 36.000 4.80 0.00 0.00 2.90
3966 4273 1.080161 TACACTGAGCATGCGCGAA 60.080 52.632 12.10 0.00 45.49 4.70
4050 4357 0.396435 TAGCCGCATATGGTGAAGGG 59.604 55.000 4.56 0.00 0.00 3.95
4056 4363 2.213499 GCATATGGTGAAGGGAACGAG 58.787 52.381 4.56 0.00 0.00 4.18
4077 4384 0.036294 GGAGGTTGACAGGGCTACAC 60.036 60.000 0.00 0.00 0.00 2.90
4092 4399 2.480416 GCTACACGAGACAGCTAGCATT 60.480 50.000 18.83 2.01 31.84 3.56
4114 4421 3.041211 TCAGACTTCTCATGGGTATGGG 58.959 50.000 0.00 0.00 36.04 4.00
4133 4440 3.227614 GGGTGGAGCAAACCTTTTCTTA 58.772 45.455 2.93 0.00 37.85 2.10
4134 4441 3.832490 GGGTGGAGCAAACCTTTTCTTAT 59.168 43.478 2.93 0.00 37.85 1.73
4164 4474 8.973182 AGTTGTGTTTTCCTTCCTGTTTATTTA 58.027 29.630 0.00 0.00 0.00 1.40
4167 4477 8.919145 TGTGTTTTCCTTCCTGTTTATTTACAT 58.081 29.630 0.00 0.00 0.00 2.29
4169 4479 8.364142 TGTTTTCCTTCCTGTTTATTTACATGG 58.636 33.333 0.00 0.00 0.00 3.66
4173 4483 6.432783 TCCTTCCTGTTTATTTACATGGTGTG 59.567 38.462 0.00 0.00 0.00 3.82
4176 4486 6.477253 TCCTGTTTATTTACATGGTGTGCTA 58.523 36.000 0.00 0.00 0.00 3.49
4181 4491 8.797438 TGTTTATTTACATGGTGTGCTAATCAA 58.203 29.630 0.00 0.00 0.00 2.57
4234 4544 1.432270 GCTGCTCTATTCGTGTGGGC 61.432 60.000 0.00 0.00 0.00 5.36
4290 4600 2.962421 CCCCCTTGTTCTGCAAAACTAA 59.038 45.455 4.25 0.00 36.53 2.24
4326 4636 8.081517 TGGGAATGCAGAAAAAGAATTATGAT 57.918 30.769 0.00 0.00 0.00 2.45
4327 4637 7.982919 TGGGAATGCAGAAAAAGAATTATGATG 59.017 33.333 0.00 0.00 0.00 3.07
4448 4758 7.923344 GCATATATTATACTGGTAGTCTGCTGG 59.077 40.741 0.00 0.00 0.00 4.85
4480 4849 2.802816 CCGTAGCTTGGTAATCTGCATC 59.197 50.000 0.00 0.00 0.00 3.91
4490 4859 5.316167 TGGTAATCTGCATCTTTGAACTGT 58.684 37.500 0.00 0.00 0.00 3.55
4680 5049 3.084786 CCTGAAAAGGCCGAATTCTTCT 58.915 45.455 15.94 0.00 0.00 2.85
4705 5074 4.381185 GGGAAAAGAAAATAAATCGGCGGT 60.381 41.667 7.21 0.00 0.00 5.68
4778 5147 3.412386 GGGCACTGTCTGTACAAAATCT 58.588 45.455 0.00 0.00 34.49 2.40
4854 5223 3.695830 TCTGTTGGGTCTGTACAATCC 57.304 47.619 0.00 2.17 0.00 3.01
4890 5259 7.014038 AGTCCATTCGGAGAACTACGTTATTAT 59.986 37.037 6.34 0.00 43.99 1.28
5017 5394 1.433837 GCGTATCGGTTTTCGGCCAT 61.434 55.000 2.24 0.00 39.77 4.40
5018 5395 0.580104 CGTATCGGTTTTCGGCCATC 59.420 55.000 2.24 0.00 39.77 3.51
5021 5398 1.094785 ATCGGTTTTCGGCCATCTTG 58.905 50.000 2.24 0.00 39.77 3.02
5022 5399 0.035598 TCGGTTTTCGGCCATCTTGA 59.964 50.000 2.24 0.00 39.77 3.02
5023 5400 1.094785 CGGTTTTCGGCCATCTTGAT 58.905 50.000 2.24 0.00 34.75 2.57
5024 5401 2.093394 TCGGTTTTCGGCCATCTTGATA 60.093 45.455 2.24 0.00 39.77 2.15
5025 5402 2.287915 CGGTTTTCGGCCATCTTGATAG 59.712 50.000 2.24 0.00 34.75 2.08
5026 5403 3.279434 GGTTTTCGGCCATCTTGATAGT 58.721 45.455 2.24 0.00 0.00 2.12
5028 5405 4.201920 GGTTTTCGGCCATCTTGATAGTTC 60.202 45.833 2.24 0.00 0.00 3.01
5029 5406 4.487714 TTTCGGCCATCTTGATAGTTCT 57.512 40.909 2.24 0.00 0.00 3.01
5030 5407 4.487714 TTCGGCCATCTTGATAGTTCTT 57.512 40.909 2.24 0.00 0.00 2.52
5032 5409 4.442706 TCGGCCATCTTGATAGTTCTTTC 58.557 43.478 2.24 0.00 0.00 2.62
5033 5410 4.162320 TCGGCCATCTTGATAGTTCTTTCT 59.838 41.667 2.24 0.00 0.00 2.52
5035 5412 5.431765 GGCCATCTTGATAGTTCTTTCTGA 58.568 41.667 0.00 0.00 0.00 3.27
5036 5413 5.526846 GGCCATCTTGATAGTTCTTTCTGAG 59.473 44.000 0.00 0.00 0.00 3.35
5038 5415 6.597280 GCCATCTTGATAGTTCTTTCTGAGTT 59.403 38.462 0.00 0.00 0.00 3.01
5039 5416 7.413877 GCCATCTTGATAGTTCTTTCTGAGTTG 60.414 40.741 0.00 0.00 0.00 3.16
5041 5418 7.953158 TCTTGATAGTTCTTTCTGAGTTGTG 57.047 36.000 0.00 0.00 0.00 3.33
5042 5419 6.425114 TCTTGATAGTTCTTTCTGAGTTGTGC 59.575 38.462 0.00 0.00 0.00 4.57
5043 5420 4.997395 TGATAGTTCTTTCTGAGTTGTGCC 59.003 41.667 0.00 0.00 0.00 5.01
5045 5422 3.209410 AGTTCTTTCTGAGTTGTGCCTG 58.791 45.455 0.00 0.00 0.00 4.85
5046 5423 3.118261 AGTTCTTTCTGAGTTGTGCCTGA 60.118 43.478 0.00 0.00 0.00 3.86
5047 5424 3.777106 TCTTTCTGAGTTGTGCCTGAT 57.223 42.857 0.00 0.00 0.00 2.90
5048 5425 4.890158 TCTTTCTGAGTTGTGCCTGATA 57.110 40.909 0.00 0.00 0.00 2.15
5050 5427 5.423015 TCTTTCTGAGTTGTGCCTGATATC 58.577 41.667 0.00 0.00 0.00 1.63
5051 5428 4.824479 TTCTGAGTTGTGCCTGATATCA 57.176 40.909 5.07 5.07 0.00 2.15
5052 5429 4.824479 TCTGAGTTGTGCCTGATATCAA 57.176 40.909 6.90 0.00 0.00 2.57
5053 5430 4.507710 TCTGAGTTGTGCCTGATATCAAC 58.492 43.478 6.90 3.02 39.95 3.18
5054 5431 3.261580 TGAGTTGTGCCTGATATCAACG 58.738 45.455 6.90 1.09 43.00 4.10
5055 5432 3.056179 TGAGTTGTGCCTGATATCAACGA 60.056 43.478 6.90 0.00 43.00 3.85
5056 5433 4.122776 GAGTTGTGCCTGATATCAACGAT 58.877 43.478 6.90 0.00 43.00 3.73
5058 5435 4.122776 GTTGTGCCTGATATCAACGATCT 58.877 43.478 6.90 0.00 32.56 2.75
5059 5436 3.982475 TGTGCCTGATATCAACGATCTC 58.018 45.455 6.90 0.00 0.00 2.75
5060 5437 3.638627 TGTGCCTGATATCAACGATCTCT 59.361 43.478 6.90 0.00 0.00 3.10
5061 5438 4.233789 GTGCCTGATATCAACGATCTCTC 58.766 47.826 6.90 0.00 0.00 3.20
5062 5439 4.022416 GTGCCTGATATCAACGATCTCTCT 60.022 45.833 6.90 0.00 0.00 3.10
5063 5440 4.586421 TGCCTGATATCAACGATCTCTCTT 59.414 41.667 6.90 0.00 0.00 2.85
5065 5442 5.278709 GCCTGATATCAACGATCTCTCTTGA 60.279 44.000 6.90 0.00 0.00 3.02
5067 5444 7.028962 CCTGATATCAACGATCTCTCTTGATC 58.971 42.308 6.90 0.00 39.40 2.92
5068 5445 6.918626 TGATATCAACGATCTCTCTTGATCC 58.081 40.000 1.98 4.33 39.57 3.36
5069 5446 3.699779 TCAACGATCTCTCTTGATCCG 57.300 47.619 0.00 0.00 39.57 4.18
5071 5448 3.111838 CAACGATCTCTCTTGATCCGTG 58.888 50.000 0.00 0.00 39.57 4.94
5073 5450 3.017442 ACGATCTCTCTTGATCCGTGAA 58.983 45.455 0.00 0.00 39.57 3.18
5075 5452 4.225984 CGATCTCTCTTGATCCGTGAATC 58.774 47.826 0.00 0.00 39.57 2.52
5077 5454 5.595885 GATCTCTCTTGATCCGTGAATCAA 58.404 41.667 0.00 5.38 42.01 2.57
5078 5455 5.604758 TCTCTCTTGATCCGTGAATCAAT 57.395 39.130 5.81 0.00 42.97 2.57
5079 5456 6.715347 TCTCTCTTGATCCGTGAATCAATA 57.285 37.500 5.81 0.21 42.97 1.90
5080 5457 6.507900 TCTCTCTTGATCCGTGAATCAATAC 58.492 40.000 5.81 0.00 42.97 1.89
5081 5458 6.096846 TCTCTCTTGATCCGTGAATCAATACA 59.903 38.462 5.81 0.00 42.97 2.29
5082 5459 6.639563 TCTCTTGATCCGTGAATCAATACAA 58.360 36.000 5.81 0.00 42.97 2.41
5083 5460 7.102993 TCTCTTGATCCGTGAATCAATACAAA 58.897 34.615 5.81 0.00 42.97 2.83
5084 5461 7.606073 TCTCTTGATCCGTGAATCAATACAAAA 59.394 33.333 5.81 0.00 42.97 2.44
5085 5462 8.105097 TCTTGATCCGTGAATCAATACAAAAA 57.895 30.769 5.81 0.00 42.97 1.94
5086 5463 8.739039 TCTTGATCCGTGAATCAATACAAAAAT 58.261 29.630 5.81 0.00 42.97 1.82
5087 5464 8.909708 TTGATCCGTGAATCAATACAAAAATC 57.090 30.769 0.00 0.00 39.98 2.17
5088 5465 8.049655 TGATCCGTGAATCAATACAAAAATCA 57.950 30.769 0.00 0.00 32.80 2.57
5089 5466 8.518702 TGATCCGTGAATCAATACAAAAATCAA 58.481 29.630 0.00 0.00 32.80 2.57
5090 5467 9.520204 GATCCGTGAATCAATACAAAAATCAAT 57.480 29.630 0.00 0.00 0.00 2.57
5091 5468 8.686397 TCCGTGAATCAATACAAAAATCAATG 57.314 30.769 0.00 0.00 0.00 2.82
5092 5469 7.758980 TCCGTGAATCAATACAAAAATCAATGG 59.241 33.333 0.00 0.00 0.00 3.16
5093 5470 7.010367 CCGTGAATCAATACAAAAATCAATGGG 59.990 37.037 0.00 0.00 0.00 4.00
5094 5471 7.464444 CGTGAATCAATACAAAAATCAATGGGC 60.464 37.037 0.00 0.00 0.00 5.36
5095 5472 7.550196 GTGAATCAATACAAAAATCAATGGGCT 59.450 33.333 0.00 0.00 0.00 5.19
5096 5473 7.765360 TGAATCAATACAAAAATCAATGGGCTC 59.235 33.333 0.00 0.00 0.00 4.70
5097 5474 6.855763 TCAATACAAAAATCAATGGGCTCT 57.144 33.333 0.00 0.00 0.00 4.09
5098 5475 6.632909 TCAATACAAAAATCAATGGGCTCTG 58.367 36.000 0.00 0.00 0.00 3.35
5099 5476 6.436847 TCAATACAAAAATCAATGGGCTCTGA 59.563 34.615 0.00 0.00 0.00 3.27
5100 5477 4.525912 ACAAAAATCAATGGGCTCTGAC 57.474 40.909 0.00 0.00 0.00 3.51
5101 5478 3.259123 ACAAAAATCAATGGGCTCTGACC 59.741 43.478 0.00 0.00 0.00 4.02
5109 5486 0.324943 TGGGCTCTGACCAAGTTAGC 59.675 55.000 0.00 0.00 38.06 3.09
5112 5489 2.236395 GGGCTCTGACCAAGTTAGCTTA 59.764 50.000 0.00 0.00 32.87 3.09
5169 5547 1.953686 TGCTCGAAAGGAAAACTTGGG 59.046 47.619 0.00 0.00 39.96 4.12
5174 5552 1.411246 GAAAGGAAAACTTGGGCCGTT 59.589 47.619 0.00 0.00 39.96 4.44
5179 5557 2.287970 GGAAAACTTGGGCCGTTTGTAG 60.288 50.000 9.84 0.00 35.00 2.74
5195 5577 2.739943 TGTAGATCTCAGTGTCCCCAG 58.260 52.381 0.00 0.00 0.00 4.45
5201 5583 4.729918 CAGTGTCCCCAGGCTGCC 62.730 72.222 11.65 11.65 0.00 4.85
5215 5597 3.191903 CTGCCAGACGCTGCTATAG 57.808 57.895 0.00 0.00 38.78 1.31
5216 5598 0.387202 CTGCCAGACGCTGCTATAGT 59.613 55.000 0.84 0.00 38.78 2.12
5217 5599 0.103026 TGCCAGACGCTGCTATAGTG 59.897 55.000 0.84 0.00 42.68 2.74
5218 5600 1.218230 GCCAGACGCTGCTATAGTGC 61.218 60.000 0.84 5.79 40.64 4.40
5219 5601 0.387202 CCAGACGCTGCTATAGTGCT 59.613 55.000 14.63 5.46 40.64 4.40
5220 5602 1.609072 CCAGACGCTGCTATAGTGCTA 59.391 52.381 14.63 0.00 40.64 3.49
5221 5603 2.230025 CCAGACGCTGCTATAGTGCTAT 59.770 50.000 14.63 0.00 40.64 2.97
5227 5609 3.367806 CGCTGCTATAGTGCTATGACCAT 60.368 47.826 14.63 0.00 0.00 3.55
5263 5645 1.421485 CGTTTGCAGATGGTCGCTC 59.579 57.895 0.00 0.00 0.00 5.03
5293 5686 0.459489 CGGCCCTCTCTTTCTCTCTG 59.541 60.000 0.00 0.00 0.00 3.35
5294 5687 1.567357 GGCCCTCTCTTTCTCTCTGT 58.433 55.000 0.00 0.00 0.00 3.41
5295 5688 1.480545 GGCCCTCTCTTTCTCTCTGTC 59.519 57.143 0.00 0.00 0.00 3.51
5297 5690 2.427095 GCCCTCTCTTTCTCTCTGTCTC 59.573 54.545 0.00 0.00 0.00 3.36
5298 5691 3.877735 GCCCTCTCTTTCTCTCTGTCTCT 60.878 52.174 0.00 0.00 0.00 3.10
5299 5692 3.947834 CCCTCTCTTTCTCTCTGTCTCTC 59.052 52.174 0.00 0.00 0.00 3.20
5326 5727 5.230942 TCTGAAGAAACGAGACAAGGAATC 58.769 41.667 0.00 0.00 0.00 2.52
5346 5747 2.641559 GCAGCGCAAAGTTCTGCT 59.358 55.556 11.47 0.00 46.93 4.24
5355 5756 3.303990 CGCAAAGTTCTGCTCTGCTTTTA 60.304 43.478 7.94 0.00 40.33 1.52
5358 5759 4.431661 AAGTTCTGCTCTGCTTTTATGC 57.568 40.909 0.00 0.00 0.00 3.14
5363 5764 5.089970 TCTGCTCTGCTTTTATGCTCTTA 57.910 39.130 0.00 0.00 0.00 2.10
5471 5877 3.426568 GAAGTCGTGCAGCTGGCC 61.427 66.667 17.12 0.00 43.89 5.36
5473 5879 4.694233 AGTCGTGCAGCTGGCCTG 62.694 66.667 17.12 4.26 43.89 4.85
5480 5886 4.798344 CAGCTGGCCTGCTCCCTG 62.798 72.222 32.12 19.08 41.98 4.45
5487 5893 2.743928 CCTGCTCCCTGAACGCAC 60.744 66.667 0.00 0.00 0.00 5.34
5529 5935 2.676839 CCTGCTGCAGATACTGAACTTG 59.323 50.000 30.10 5.52 32.44 3.16
5531 5937 4.190001 CTGCTGCAGATACTGAACTTGAT 58.810 43.478 24.88 0.00 32.44 2.57
5556 5962 6.706295 AGAAAAGTAGTGAAGAAGCTGCTAT 58.294 36.000 0.90 0.00 0.00 2.97
5563 5969 4.934602 AGTGAAGAAGCTGCTATCTGAAAC 59.065 41.667 0.90 7.79 0.00 2.78
5564 5970 3.928992 TGAAGAAGCTGCTATCTGAAACG 59.071 43.478 0.90 0.00 0.00 3.60
5565 5971 2.275318 AGAAGCTGCTATCTGAAACGC 58.725 47.619 0.90 0.00 0.00 4.84
5567 5973 0.539051 AGCTGCTATCTGAAACGCCT 59.461 50.000 0.00 0.00 0.00 5.52
5568 5974 1.757118 AGCTGCTATCTGAAACGCCTA 59.243 47.619 0.00 0.00 0.00 3.93
5573 5981 3.384789 TGCTATCTGAAACGCCTACTGAT 59.615 43.478 0.00 0.00 0.00 2.90
5598 8310 2.037847 GCCATGGCTCCCAGGTTT 59.962 61.111 29.98 0.00 36.75 3.27
5632 8344 0.605319 CTTCACCGTGCTTTGCCCTA 60.605 55.000 0.00 0.00 0.00 3.53
5633 8345 0.037590 TTCACCGTGCTTTGCCCTAT 59.962 50.000 0.00 0.00 0.00 2.57
5634 8346 0.676466 TCACCGTGCTTTGCCCTATG 60.676 55.000 0.00 0.00 0.00 2.23
5635 8347 0.960364 CACCGTGCTTTGCCCTATGT 60.960 55.000 0.00 0.00 0.00 2.29
5636 8348 0.616371 ACCGTGCTTTGCCCTATGTA 59.384 50.000 0.00 0.00 0.00 2.29
5637 8349 1.211949 ACCGTGCTTTGCCCTATGTAT 59.788 47.619 0.00 0.00 0.00 2.29
5638 8350 1.603802 CCGTGCTTTGCCCTATGTATG 59.396 52.381 0.00 0.00 0.00 2.39
5639 8351 2.288666 CGTGCTTTGCCCTATGTATGT 58.711 47.619 0.00 0.00 0.00 2.29
5640 8352 2.032054 CGTGCTTTGCCCTATGTATGTG 59.968 50.000 0.00 0.00 0.00 3.21
5641 8353 2.358898 GTGCTTTGCCCTATGTATGTGG 59.641 50.000 0.00 0.00 0.00 4.17
5642 8354 2.240921 TGCTTTGCCCTATGTATGTGGA 59.759 45.455 0.00 0.00 0.00 4.02
5643 8355 2.880890 GCTTTGCCCTATGTATGTGGAG 59.119 50.000 0.00 0.00 0.00 3.86
5644 8356 3.685550 GCTTTGCCCTATGTATGTGGAGT 60.686 47.826 0.00 0.00 0.00 3.85
5645 8357 3.558931 TTGCCCTATGTATGTGGAGTG 57.441 47.619 0.00 0.00 0.00 3.51
5646 8358 1.140852 TGCCCTATGTATGTGGAGTGC 59.859 52.381 0.00 0.00 0.00 4.40
5647 8359 1.543429 GCCCTATGTATGTGGAGTGCC 60.543 57.143 0.00 0.00 0.00 5.01
5648 8360 2.050144 CCCTATGTATGTGGAGTGCCT 58.950 52.381 0.00 0.00 34.31 4.75
5649 8361 2.224378 CCCTATGTATGTGGAGTGCCTG 60.224 54.545 0.00 0.00 34.31 4.85
5650 8362 2.435805 CCTATGTATGTGGAGTGCCTGT 59.564 50.000 0.00 0.00 34.31 4.00
5651 8363 2.408271 ATGTATGTGGAGTGCCTGTG 57.592 50.000 0.00 0.00 34.31 3.66
5652 8364 0.321564 TGTATGTGGAGTGCCTGTGC 60.322 55.000 0.00 0.00 38.26 4.57
5653 8365 1.026718 GTATGTGGAGTGCCTGTGCC 61.027 60.000 0.00 0.00 36.33 5.01
5654 8366 2.520465 TATGTGGAGTGCCTGTGCCG 62.520 60.000 0.00 0.00 36.33 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.509929 GGTTGCACGACCGAGTTAAC 59.490 55.000 0.00 0.00 0.00 2.01
1 2 0.390124 AGGTTGCACGACCGAGTTAA 59.610 50.000 1.88 0.00 44.62 2.01
2 3 0.319211 CAGGTTGCACGACCGAGTTA 60.319 55.000 1.88 0.00 44.62 2.24
3 4 1.594293 CAGGTTGCACGACCGAGTT 60.594 57.895 1.88 0.00 44.62 3.01
4 5 2.029073 CAGGTTGCACGACCGAGT 59.971 61.111 1.88 0.00 44.62 4.18
5 6 2.738521 CCAGGTTGCACGACCGAG 60.739 66.667 1.88 0.00 44.62 4.63
32 33 1.135333 GAACGGCAAAAGTGGAAACCA 59.865 47.619 0.00 0.00 0.00 3.67
51 52 2.868583 CGAGTTTATCCTCCGTCGTAGA 59.131 50.000 0.00 0.00 0.00 2.59
60 61 2.288518 CCTAGCAGGCGAGTTTATCCTC 60.289 54.545 0.85 0.00 0.00 3.71
74 75 2.379972 ACCACACTAGTAGCCTAGCAG 58.620 52.381 0.00 0.00 43.87 4.24
75 76 2.496070 CAACCACACTAGTAGCCTAGCA 59.504 50.000 0.00 0.00 43.87 3.49
76 77 2.738964 GCAACCACACTAGTAGCCTAGC 60.739 54.545 0.00 0.00 43.87 3.42
77 78 2.496070 TGCAACCACACTAGTAGCCTAG 59.504 50.000 0.00 0.00 45.27 3.02
78 79 2.232941 GTGCAACCACACTAGTAGCCTA 59.767 50.000 0.00 0.00 41.67 3.93
79 80 1.002087 GTGCAACCACACTAGTAGCCT 59.998 52.381 0.00 0.00 41.67 4.58
80 81 1.439679 GTGCAACCACACTAGTAGCC 58.560 55.000 0.00 0.00 41.67 3.93
127 128 3.755628 GCACACATGGGCTGCCTG 61.756 66.667 19.68 12.54 42.27 4.85
273 274 1.603739 GGACCCCTTTGTCAGGTGC 60.604 63.158 0.00 0.00 42.02 5.01
355 379 2.815211 CTATGTGCTGTGCGGCGT 60.815 61.111 9.37 0.00 34.52 5.68
356 380 1.911293 AAACTATGTGCTGTGCGGCG 61.911 55.000 0.51 0.51 34.52 6.46
357 381 0.454957 CAAACTATGTGCTGTGCGGC 60.455 55.000 0.00 0.00 0.00 6.53
358 382 0.454957 GCAAACTATGTGCTGTGCGG 60.455 55.000 0.00 0.00 39.00 5.69
465 502 1.524863 CCTCTCCTTGTCACGTCCGT 61.525 60.000 0.00 0.00 0.00 4.69
516 553 5.310857 AGAGTTTACAATGTTCCTTCCCTCT 59.689 40.000 0.00 0.00 0.00 3.69
569 621 1.961277 CAGAAACCAAGCGCCGTCT 60.961 57.895 2.29 0.00 0.00 4.18
571 623 2.978010 CCAGAAACCAAGCGCCGT 60.978 61.111 2.29 0.00 0.00 5.68
572 624 4.404654 GCCAGAAACCAAGCGCCG 62.405 66.667 2.29 0.00 0.00 6.46
574 626 4.056125 GGGCCAGAAACCAAGCGC 62.056 66.667 4.39 0.00 0.00 5.92
577 629 1.112916 AAACCGGGCCAGAAACCAAG 61.113 55.000 6.32 0.00 0.00 3.61
578 630 1.075896 AAACCGGGCCAGAAACCAA 60.076 52.632 6.32 0.00 0.00 3.67
579 631 1.830408 CAAACCGGGCCAGAAACCA 60.830 57.895 6.32 0.00 0.00 3.67
580 632 3.047735 CAAACCGGGCCAGAAACC 58.952 61.111 6.32 0.00 0.00 3.27
581 633 2.338620 GCAAACCGGGCCAGAAAC 59.661 61.111 6.32 0.00 0.00 2.78
751 808 6.073440 GGCGACCTTGCTCGAAATATTATTTA 60.073 38.462 1.66 0.00 35.58 1.40
752 809 5.277828 GGCGACCTTGCTCGAAATATTATTT 60.278 40.000 1.25 1.25 35.58 1.40
754 811 3.746492 GGCGACCTTGCTCGAAATATTAT 59.254 43.478 0.00 0.00 35.58 1.28
756 813 1.940613 GGCGACCTTGCTCGAAATATT 59.059 47.619 0.00 0.00 35.58 1.28
757 814 1.139058 AGGCGACCTTGCTCGAAATAT 59.861 47.619 0.00 0.00 35.58 1.28
758 815 0.535335 AGGCGACCTTGCTCGAAATA 59.465 50.000 0.00 0.00 35.58 1.40
760 817 1.374252 GAGGCGACCTTGCTCGAAA 60.374 57.895 0.00 0.00 35.58 3.46
761 818 2.261671 GAGGCGACCTTGCTCGAA 59.738 61.111 0.00 0.00 35.58 3.71
762 819 3.760035 GGAGGCGACCTTGCTCGA 61.760 66.667 0.00 0.00 35.58 4.04
766 823 3.978571 GAAGGGGAGGCGACCTTGC 62.979 68.421 13.70 0.00 46.64 4.01
771 828 3.471806 GAGGGAAGGGGAGGCGAC 61.472 72.222 0.00 0.00 0.00 5.19
772 829 4.798682 GGAGGGAAGGGGAGGCGA 62.799 72.222 0.00 0.00 0.00 5.54
775 832 1.772156 GGATGGAGGGAAGGGGAGG 60.772 68.421 0.00 0.00 0.00 4.30
777 834 1.238896 AGAGGATGGAGGGAAGGGGA 61.239 60.000 0.00 0.00 0.00 4.81
790 855 0.476771 GAGACGAGGGAGGAGAGGAT 59.523 60.000 0.00 0.00 0.00 3.24
823 888 1.244697 GCACTCACCAGAGAGACGGA 61.245 60.000 0.00 0.00 44.98 4.69
824 889 1.214062 GCACTCACCAGAGAGACGG 59.786 63.158 0.00 0.00 44.98 4.79
825 890 1.214062 GGCACTCACCAGAGAGACG 59.786 63.158 0.00 0.00 44.98 4.18
841 906 4.933064 CATCGAGGAGTCCGCGGC 62.933 72.222 31.11 16.31 46.27 6.53
873 938 0.678048 AGATTGAAGAAGCCGGGTGC 60.678 55.000 7.07 4.63 41.71 5.01
874 939 1.065854 AGAGATTGAAGAAGCCGGGTG 60.066 52.381 7.07 0.00 0.00 4.61
875 940 1.065854 CAGAGATTGAAGAAGCCGGGT 60.066 52.381 0.00 0.00 0.00 5.28
876 941 1.065854 ACAGAGATTGAAGAAGCCGGG 60.066 52.381 2.18 0.00 0.00 5.73
877 942 2.393271 ACAGAGATTGAAGAAGCCGG 57.607 50.000 0.00 0.00 0.00 6.13
878 943 2.159599 GCAACAGAGATTGAAGAAGCCG 60.160 50.000 0.00 0.00 0.00 5.52
879 944 2.159599 CGCAACAGAGATTGAAGAAGCC 60.160 50.000 0.00 0.00 0.00 4.35
880 945 2.481952 ACGCAACAGAGATTGAAGAAGC 59.518 45.455 0.00 0.00 0.00 3.86
881 946 4.212004 TGAACGCAACAGAGATTGAAGAAG 59.788 41.667 0.00 0.00 0.00 2.85
882 947 4.126437 TGAACGCAACAGAGATTGAAGAA 58.874 39.130 0.00 0.00 0.00 2.52
883 948 3.727726 TGAACGCAACAGAGATTGAAGA 58.272 40.909 0.00 0.00 0.00 2.87
884 949 4.675190 ATGAACGCAACAGAGATTGAAG 57.325 40.909 0.00 0.00 0.00 3.02
885 950 4.377328 CGAATGAACGCAACAGAGATTGAA 60.377 41.667 0.00 0.00 0.00 2.69
886 951 3.123453 CGAATGAACGCAACAGAGATTGA 59.877 43.478 0.00 0.00 0.00 2.57
887 952 3.410850 CGAATGAACGCAACAGAGATTG 58.589 45.455 0.00 0.00 0.00 2.67
888 953 3.729526 CGAATGAACGCAACAGAGATT 57.270 42.857 0.00 0.00 0.00 2.40
909 980 3.017323 GCCATTGCGGTCGATCAG 58.983 61.111 0.00 0.00 36.97 2.90
931 1002 4.616835 GCTAGCTGATCAACCAAACCAAAG 60.617 45.833 7.70 0.00 0.00 2.77
934 1005 2.436417 GCTAGCTGATCAACCAAACCA 58.564 47.619 7.70 0.00 0.00 3.67
935 1006 1.398390 CGCTAGCTGATCAACCAAACC 59.602 52.381 13.93 0.00 0.00 3.27
936 1007 1.202076 GCGCTAGCTGATCAACCAAAC 60.202 52.381 13.93 0.00 41.01 2.93
975 1055 3.106672 CGCTGCTTACTTACTTACTCCG 58.893 50.000 0.00 0.00 0.00 4.63
977 1057 2.858941 GCCGCTGCTTACTTACTTACTC 59.141 50.000 0.00 0.00 33.53 2.59
1304 1398 6.994496 TCAATCAATCTATGGAAGCGAAGATT 59.006 34.615 0.00 0.00 41.04 2.40
1319 1434 7.344134 TCTCATGGAAGTCAATCAATCAATCT 58.656 34.615 0.00 0.00 0.00 2.40
1362 1477 2.263895 ATCCCAAGGTGCTACTACCA 57.736 50.000 0.00 0.00 43.37 3.25
1363 1478 2.633481 CCTATCCCAAGGTGCTACTACC 59.367 54.545 0.00 0.00 41.17 3.18
1390 1505 0.322322 TAATCCCGTGAAAGTGCCGT 59.678 50.000 0.00 0.00 0.00 5.68
1392 1507 1.467342 GTGTAATCCCGTGAAAGTGCC 59.533 52.381 0.00 0.00 0.00 5.01
1431 1547 3.947132 CTGCACTGCTCCCTCCGTG 62.947 68.421 1.98 0.00 0.00 4.94
1432 1548 3.699894 CTGCACTGCTCCCTCCGT 61.700 66.667 1.98 0.00 0.00 4.69
1433 1549 3.699894 ACTGCACTGCTCCCTCCG 61.700 66.667 1.98 0.00 0.00 4.63
1434 1550 2.046507 CACTGCACTGCTCCCTCC 60.047 66.667 1.98 0.00 0.00 4.30
1438 1554 3.965539 ATCCGCACTGCACTGCTCC 62.966 63.158 15.07 0.00 34.77 4.70
1490 1627 3.573967 CAGGCCTTGAAAGCTTTTCCTAA 59.426 43.478 14.05 6.12 0.00 2.69
1494 1631 1.688735 ACCAGGCCTTGAAAGCTTTTC 59.311 47.619 14.05 7.36 0.00 2.29
1495 1632 1.413812 CACCAGGCCTTGAAAGCTTTT 59.586 47.619 14.05 0.00 0.00 2.27
1500 1637 1.153756 ACCCACCAGGCCTTGAAAG 59.846 57.895 11.55 0.00 40.58 2.62
1690 1830 8.026607 TGCGAAGAAAGAAAGAAAAAGAGAAAA 58.973 29.630 0.00 0.00 0.00 2.29
1695 1835 7.645340 CAGAATGCGAAGAAAGAAAGAAAAAGA 59.355 33.333 0.00 0.00 0.00 2.52
1716 1860 1.213926 GATCCTCCAACCCTGCAGAAT 59.786 52.381 17.39 0.00 0.00 2.40
1719 1863 0.107312 CAGATCCTCCAACCCTGCAG 60.107 60.000 6.78 6.78 0.00 4.41
1783 1927 5.292765 ACATCGATAACTGTGATGACCATC 58.707 41.667 11.44 3.17 41.54 3.51
1787 1931 5.812642 AGGAAACATCGATAACTGTGATGAC 59.187 40.000 11.44 4.45 41.54 3.06
1795 1939 6.112734 TGTATGCAAGGAAACATCGATAACT 58.887 36.000 0.00 0.00 0.00 2.24
1796 1940 6.358118 TGTATGCAAGGAAACATCGATAAC 57.642 37.500 0.00 0.00 0.00 1.89
1803 1947 7.466746 ACAAAGTATGTATGCAAGGAAACAT 57.533 32.000 0.00 0.00 41.63 2.71
1833 1977 5.473846 TCATCCCTATAAGAACGCTACAGAG 59.526 44.000 0.00 0.00 0.00 3.35
1834 1978 5.382616 TCATCCCTATAAGAACGCTACAGA 58.617 41.667 0.00 0.00 0.00 3.41
1835 1979 5.704888 CTCATCCCTATAAGAACGCTACAG 58.295 45.833 0.00 0.00 0.00 2.74
1837 1981 4.022242 TGCTCATCCCTATAAGAACGCTAC 60.022 45.833 0.00 0.00 0.00 3.58
1839 1983 2.965831 TGCTCATCCCTATAAGAACGCT 59.034 45.455 0.00 0.00 0.00 5.07
1840 1984 3.321497 CTGCTCATCCCTATAAGAACGC 58.679 50.000 0.00 0.00 0.00 4.84
1842 1986 3.071602 TGGCTGCTCATCCCTATAAGAAC 59.928 47.826 0.00 0.00 0.00 3.01
1843 1987 3.317406 TGGCTGCTCATCCCTATAAGAA 58.683 45.455 0.00 0.00 0.00 2.52
1844 1988 2.976440 TGGCTGCTCATCCCTATAAGA 58.024 47.619 0.00 0.00 0.00 2.10
1845 1989 3.262660 TGATGGCTGCTCATCCCTATAAG 59.737 47.826 20.74 0.00 41.97 1.73
1846 1990 3.250617 TGATGGCTGCTCATCCCTATAA 58.749 45.455 20.74 5.89 41.97 0.98
1847 1991 2.906568 TGATGGCTGCTCATCCCTATA 58.093 47.619 20.74 6.41 41.97 1.31
1848 1992 1.738474 TGATGGCTGCTCATCCCTAT 58.262 50.000 20.74 0.00 41.97 2.57
1849 1993 1.738474 ATGATGGCTGCTCATCCCTA 58.262 50.000 20.74 9.13 41.97 3.53
1850 1994 0.851469 AATGATGGCTGCTCATCCCT 59.149 50.000 20.74 10.76 41.97 4.20
1862 2006 7.363268 CCCTAAAACTTCTGGAGAAAATGATGG 60.363 40.741 0.00 0.00 33.07 3.51
1866 2010 6.010219 TCCCCTAAAACTTCTGGAGAAAATG 58.990 40.000 0.00 0.00 33.07 2.32
1867 2011 6.214177 TCCCCTAAAACTTCTGGAGAAAAT 57.786 37.500 0.00 0.00 33.07 1.82
1870 2014 4.849810 TCATCCCCTAAAACTTCTGGAGAA 59.150 41.667 0.00 0.00 0.00 2.87
1906 2050 5.785243 AGAAAGTAGAGCAAACAGTACTCC 58.215 41.667 0.00 0.00 0.00 3.85
1912 2056 8.078596 AGCAAAAATAGAAAGTAGAGCAAACAG 58.921 33.333 0.00 0.00 0.00 3.16
2009 2153 5.615544 GCTCGATCCGTCATAATTCCATTTG 60.616 44.000 0.00 0.00 0.00 2.32
2018 2162 0.030235 CGGTGCTCGATCCGTCATAA 59.970 55.000 13.25 0.00 42.43 1.90
2021 2165 3.822192 CCGGTGCTCGATCCGTCA 61.822 66.667 17.81 0.00 44.51 4.35
2069 2213 5.670361 ACAGCAATTTCCCCCTTACTATAGA 59.330 40.000 6.78 0.00 0.00 1.98
2080 2224 1.205417 CACATGGACAGCAATTTCCCC 59.795 52.381 0.00 0.00 0.00 4.81
2089 2233 1.198637 GCTGAAGAACACATGGACAGC 59.801 52.381 0.00 0.00 41.33 4.40
2226 2377 2.418746 CGTCCAGATGAAAGGTACCAGG 60.419 54.545 15.94 2.79 0.00 4.45
2281 2432 6.282930 TGTAACCAGTAAAAGTGACCACTAC 58.717 40.000 2.78 0.00 41.58 2.73
2282 2433 6.482898 TGTAACCAGTAAAAGTGACCACTA 57.517 37.500 2.78 0.00 41.58 2.74
2292 2443 7.868415 GCCAAAATACACATGTAACCAGTAAAA 59.132 33.333 0.00 0.00 33.76 1.52
2312 2463 5.944599 TCCCGTATTAACTAACATGCCAAAA 59.055 36.000 0.00 0.00 0.00 2.44
2313 2464 5.498393 TCCCGTATTAACTAACATGCCAAA 58.502 37.500 0.00 0.00 0.00 3.28
2314 2465 5.100344 TCCCGTATTAACTAACATGCCAA 57.900 39.130 0.00 0.00 0.00 4.52
2319 2471 8.584063 AAACCAAATCCCGTATTAACTAACAT 57.416 30.769 0.00 0.00 0.00 2.71
3098 3268 1.199615 TATCAGGCCATCACGGAACA 58.800 50.000 5.01 0.00 36.56 3.18
3151 3321 7.333423 CCAGTCGACTTTTTAACCATATTCTCA 59.667 37.037 17.26 0.00 0.00 3.27
3152 3322 7.333672 ACCAGTCGACTTTTTAACCATATTCTC 59.666 37.037 17.26 0.00 0.00 2.87
3154 3324 7.373778 ACCAGTCGACTTTTTAACCATATTC 57.626 36.000 17.26 0.00 0.00 1.75
3161 3331 7.242783 TGTAACAAACCAGTCGACTTTTTAAC 58.757 34.615 17.26 15.34 0.00 2.01
3162 3332 7.375106 TGTAACAAACCAGTCGACTTTTTAA 57.625 32.000 17.26 5.05 0.00 1.52
3166 3336 7.359765 CGATAATGTAACAAACCAGTCGACTTT 60.360 37.037 17.26 9.28 0.00 2.66
3176 3346 6.197842 CCGAGTCTACGATAATGTAACAAACC 59.802 42.308 0.00 0.00 35.09 3.27
3177 3347 6.749118 ACCGAGTCTACGATAATGTAACAAAC 59.251 38.462 0.00 0.00 35.09 2.93
3181 3352 6.203723 ACCTACCGAGTCTACGATAATGTAAC 59.796 42.308 0.00 0.00 35.09 2.50
3193 3364 1.749063 CACATGCACCTACCGAGTCTA 59.251 52.381 0.00 0.00 0.00 2.59
3195 3366 1.084370 GCACATGCACCTACCGAGTC 61.084 60.000 0.00 0.00 41.59 3.36
3198 3369 1.079197 CAGCACATGCACCTACCGA 60.079 57.895 6.64 0.00 45.16 4.69
3201 3372 1.081892 CTCACAGCACATGCACCTAC 58.918 55.000 6.64 0.00 45.16 3.18
3216 3387 8.398665 GGGTGTCAGAATAAATCATAAACTCAC 58.601 37.037 0.00 0.00 0.00 3.51
3299 3471 5.923204 AGGATGATCACTTGGTCAGTTATC 58.077 41.667 0.00 0.00 36.85 1.75
3316 3496 7.818930 GGAAAATTGATAACAGCAAAAGGATGA 59.181 33.333 0.00 0.00 36.11 2.92
3327 3507 7.492344 GCTTACCAATGGGAAAATTGATAACAG 59.508 37.037 3.55 0.00 39.46 3.16
3330 3510 7.180051 AGTGCTTACCAATGGGAAAATTGATAA 59.820 33.333 3.55 0.00 39.46 1.75
3334 3514 5.151297 AGTGCTTACCAATGGGAAAATTG 57.849 39.130 3.55 0.00 37.30 2.32
3336 3516 5.086621 AGAAGTGCTTACCAATGGGAAAAT 58.913 37.500 3.55 0.00 38.05 1.82
3341 3521 7.502226 TGATAATTAGAAGTGCTTACCAATGGG 59.498 37.037 3.55 0.00 41.29 4.00
3342 3522 8.450578 TGATAATTAGAAGTGCTTACCAATGG 57.549 34.615 0.00 0.00 0.00 3.16
3345 3525 8.494433 AGGATGATAATTAGAAGTGCTTACCAA 58.506 33.333 0.00 0.00 0.00 3.67
3347 3527 9.425577 GTAGGATGATAATTAGAAGTGCTTACC 57.574 37.037 0.00 0.00 0.00 2.85
3378 3562 3.046390 GCTCCGTGATTCTCTGATTACG 58.954 50.000 0.00 0.00 38.35 3.18
3506 3690 3.967326 CTCCATTCCAGTCACCCTACATA 59.033 47.826 0.00 0.00 0.00 2.29
3594 3778 6.844696 ACACACGGCAAGATATAATTGTAG 57.155 37.500 0.00 1.00 0.00 2.74
3693 3893 4.959210 TGTTTTCTTCCCACAAAATCTCCA 59.041 37.500 0.00 0.00 0.00 3.86
3696 3896 7.038799 AGCATATGTTTTCTTCCCACAAAATCT 60.039 33.333 4.29 0.00 0.00 2.40
3712 3912 9.618890 ATTGTCTGTTAGTATCAGCATATGTTT 57.381 29.630 4.29 0.00 33.48 2.83
3755 3955 2.378547 TCAGGCCCTGTTTGAAATACCT 59.621 45.455 11.27 0.00 32.61 3.08
3756 3956 2.802719 TCAGGCCCTGTTTGAAATACC 58.197 47.619 11.27 0.00 32.61 2.73
3757 3957 4.220602 ACATTCAGGCCCTGTTTGAAATAC 59.779 41.667 18.30 0.00 34.80 1.89
3843 4149 9.877178 ACTACTCCATAAGTTAGAAATGAAGTG 57.123 33.333 0.00 0.00 39.55 3.16
3858 4164 8.792633 CAACCAATTGAGAAAACTACTCCATAA 58.207 33.333 7.12 0.00 38.15 1.90
3860 4166 7.004086 TCAACCAATTGAGAAAACTACTCCAT 58.996 34.615 7.12 0.00 40.01 3.41
3862 4168 6.877611 TCAACCAATTGAGAAAACTACTCC 57.122 37.500 7.12 0.00 40.01 3.85
3876 4182 4.666512 AGGACAAGCTGTATCAACCAATT 58.333 39.130 0.00 0.00 0.00 2.32
3877 4183 4.307032 AGGACAAGCTGTATCAACCAAT 57.693 40.909 0.00 0.00 0.00 3.16
3878 4184 3.788227 AGGACAAGCTGTATCAACCAA 57.212 42.857 0.00 0.00 0.00 3.67
3881 4188 6.528072 GCAAATTAAGGACAAGCTGTATCAAC 59.472 38.462 0.00 0.00 0.00 3.18
3888 4195 3.189287 ACTCGCAAATTAAGGACAAGCTG 59.811 43.478 0.00 0.00 0.00 4.24
3907 4214 8.332777 CAAGAAAAGATTGTTGTTTCTCACTC 57.667 34.615 0.00 0.00 39.97 3.51
3948 4255 1.078201 CTTCGCGCATGCTCAGTGTA 61.078 55.000 17.13 0.02 39.65 2.90
3952 4259 1.275953 CATCTTCGCGCATGCTCAG 59.724 57.895 17.13 6.85 39.65 3.35
3966 4273 1.254026 TCACGTCGAAACCTCCATCT 58.746 50.000 0.00 0.00 0.00 2.90
4050 4357 1.006571 TGTCAACCTCCGCTCGTTC 60.007 57.895 0.00 0.00 0.00 3.95
4056 4363 2.656069 TAGCCCTGTCAACCTCCGC 61.656 63.158 0.00 0.00 0.00 5.54
4077 4384 2.857152 GTCTGAAATGCTAGCTGTCTCG 59.143 50.000 17.23 6.40 0.00 4.04
4092 4399 3.455910 CCCATACCCATGAGAAGTCTGAA 59.544 47.826 0.00 0.00 33.67 3.02
4114 4421 8.957466 ACTAATATAAGAAAAGGTTTGCTCCAC 58.043 33.333 0.00 0.00 0.00 4.02
4133 4440 8.706322 AACAGGAAGGAAAACACAACTAATAT 57.294 30.769 0.00 0.00 0.00 1.28
4134 4441 8.528044 AAACAGGAAGGAAAACACAACTAATA 57.472 30.769 0.00 0.00 0.00 0.98
4144 4454 8.364894 ACCATGTAAATAAACAGGAAGGAAAAC 58.635 33.333 0.00 0.00 33.05 2.43
4149 4459 6.620678 CACACCATGTAAATAAACAGGAAGG 58.379 40.000 0.00 0.00 33.05 3.46
4164 4474 4.584325 AGTGTTTTGATTAGCACACCATGT 59.416 37.500 0.00 0.00 40.42 3.21
4167 4477 5.105554 ACAAAGTGTTTTGATTAGCACACCA 60.106 36.000 6.98 0.00 45.21 4.17
4169 4479 6.885735 AACAAAGTGTTTTGATTAGCACAC 57.114 33.333 6.98 0.00 45.21 3.82
4234 4544 1.153745 CTTTGCCTCGGTCTCTCGG 60.154 63.158 0.00 0.00 0.00 4.63
4290 4600 1.629353 TGCATTCCCAACCATTGCAAT 59.371 42.857 5.99 5.99 40.11 3.56
4326 4636 8.356657 CAATGTACTTGAGTTTTATTTGGGACA 58.643 33.333 0.00 0.00 36.97 4.02
4327 4637 7.812669 CCAATGTACTTGAGTTTTATTTGGGAC 59.187 37.037 0.00 0.00 36.97 4.46
4340 4650 1.474077 GGCTTGCCCAATGTACTTGAG 59.526 52.381 0.00 0.00 36.97 3.02
4440 4750 2.772739 CACATAGGTGCCAGCAGAC 58.227 57.895 0.00 0.00 38.37 3.51
4459 4828 2.309528 TGCAGATTACCAAGCTACGG 57.690 50.000 0.50 0.50 0.00 4.02
4460 4829 3.722147 AGATGCAGATTACCAAGCTACG 58.278 45.455 0.00 0.00 0.00 3.51
4480 4849 7.186021 ACAAGGTATCGTTTACAGTTCAAAG 57.814 36.000 1.80 0.00 0.00 2.77
4490 4859 3.420300 TGGGCAACAAGGTATCGTTTA 57.580 42.857 0.00 0.00 39.74 2.01
4680 5049 4.381079 CGCCGATTTATTTTCTTTTCCCCA 60.381 41.667 0.00 0.00 0.00 4.96
4705 5074 4.373116 GGACGAACAGCCTCGCCA 62.373 66.667 0.00 0.00 42.69 5.69
4714 5083 0.387622 GAATGGACGACGGACGAACA 60.388 55.000 6.90 5.41 45.77 3.18
4854 5223 1.137086 CCGAATGGACTCAGGTACAGG 59.863 57.143 0.00 0.00 39.97 4.00
4890 5259 9.699410 AATCCTTTGTGTGATTCATTATCCTTA 57.301 29.630 0.00 0.00 31.87 2.69
4920 5289 2.861935 CCAAGTTGAAAGCAGCACAAAG 59.138 45.455 3.87 0.00 0.00 2.77
4924 5293 1.269257 GGACCAAGTTGAAAGCAGCAC 60.269 52.381 3.87 0.00 0.00 4.40
4998 5375 1.433837 ATGGCCGAAAACCGATACGC 61.434 55.000 0.00 0.00 41.76 4.42
4999 5376 0.580104 GATGGCCGAAAACCGATACG 59.420 55.000 0.00 0.00 41.76 3.06
5017 5394 6.425114 GCACAACTCAGAAAGAACTATCAAGA 59.575 38.462 0.00 0.00 0.00 3.02
5018 5395 6.348050 GGCACAACTCAGAAAGAACTATCAAG 60.348 42.308 0.00 0.00 0.00 3.02
5021 5398 5.121454 CAGGCACAACTCAGAAAGAACTATC 59.879 44.000 0.00 0.00 0.00 2.08
5022 5399 4.999950 CAGGCACAACTCAGAAAGAACTAT 59.000 41.667 0.00 0.00 0.00 2.12
5023 5400 4.100963 TCAGGCACAACTCAGAAAGAACTA 59.899 41.667 0.00 0.00 0.00 2.24
5024 5401 3.118261 TCAGGCACAACTCAGAAAGAACT 60.118 43.478 0.00 0.00 0.00 3.01
5025 5402 3.206150 TCAGGCACAACTCAGAAAGAAC 58.794 45.455 0.00 0.00 0.00 3.01
5026 5403 3.558931 TCAGGCACAACTCAGAAAGAA 57.441 42.857 0.00 0.00 0.00 2.52
5028 5405 5.181009 TGATATCAGGCACAACTCAGAAAG 58.819 41.667 0.00 0.00 0.00 2.62
5029 5406 5.164620 TGATATCAGGCACAACTCAGAAA 57.835 39.130 0.00 0.00 0.00 2.52
5030 5407 4.824479 TGATATCAGGCACAACTCAGAA 57.176 40.909 0.00 0.00 0.00 3.02
5032 5409 3.308053 CGTTGATATCAGGCACAACTCAG 59.692 47.826 5.39 0.00 39.92 3.35
5033 5410 3.056179 TCGTTGATATCAGGCACAACTCA 60.056 43.478 5.39 0.00 39.92 3.41
5035 5412 3.610040 TCGTTGATATCAGGCACAACT 57.390 42.857 5.39 0.00 39.92 3.16
5036 5413 4.122776 AGATCGTTGATATCAGGCACAAC 58.877 43.478 5.39 0.00 39.08 3.32
5038 5415 3.638627 AGAGATCGTTGATATCAGGCACA 59.361 43.478 5.39 0.00 33.30 4.57
5039 5416 4.022416 AGAGAGATCGTTGATATCAGGCAC 60.022 45.833 5.39 0.76 33.30 5.01
5041 5418 4.782019 AGAGAGATCGTTGATATCAGGC 57.218 45.455 5.39 2.70 33.30 4.85
5042 5419 6.324561 TCAAGAGAGATCGTTGATATCAGG 57.675 41.667 5.39 2.68 33.30 3.86
5043 5420 7.028962 GGATCAAGAGAGATCGTTGATATCAG 58.971 42.308 5.39 0.00 44.21 2.90
5045 5422 6.027131 CGGATCAAGAGAGATCGTTGATATC 58.973 44.000 12.65 0.00 44.21 1.63
5046 5423 5.475220 ACGGATCAAGAGAGATCGTTGATAT 59.525 40.000 12.65 3.62 44.21 1.63
5047 5424 4.822350 ACGGATCAAGAGAGATCGTTGATA 59.178 41.667 12.65 0.00 44.21 2.15
5048 5425 3.634448 ACGGATCAAGAGAGATCGTTGAT 59.366 43.478 12.56 12.56 44.21 2.57
5050 5427 3.111838 CACGGATCAAGAGAGATCGTTG 58.888 50.000 0.00 0.00 44.21 4.10
5051 5428 3.017442 TCACGGATCAAGAGAGATCGTT 58.983 45.455 0.00 0.00 44.21 3.85
5052 5429 2.644676 TCACGGATCAAGAGAGATCGT 58.355 47.619 0.00 0.00 44.21 3.73
5053 5430 3.699779 TTCACGGATCAAGAGAGATCG 57.300 47.619 0.00 0.00 44.21 3.69
5054 5431 5.193663 TGATTCACGGATCAAGAGAGATC 57.806 43.478 0.00 0.00 42.89 2.75
5055 5432 5.604758 TTGATTCACGGATCAAGAGAGAT 57.395 39.130 0.00 0.00 40.20 2.75
5056 5433 5.604758 ATTGATTCACGGATCAAGAGAGA 57.395 39.130 6.87 0.00 46.02 3.10
5058 5435 6.220726 TGTATTGATTCACGGATCAAGAGA 57.779 37.500 6.87 0.00 46.02 3.10
5059 5436 6.908870 TTGTATTGATTCACGGATCAAGAG 57.091 37.500 6.87 0.00 46.02 2.85
5060 5437 7.680442 TTTTGTATTGATTCACGGATCAAGA 57.320 32.000 6.87 0.00 46.02 3.02
5061 5438 8.915871 ATTTTTGTATTGATTCACGGATCAAG 57.084 30.769 6.87 0.00 46.02 3.02
5062 5439 8.518702 TGATTTTTGTATTGATTCACGGATCAA 58.481 29.630 3.25 3.25 46.64 2.57
5063 5440 8.049655 TGATTTTTGTATTGATTCACGGATCA 57.950 30.769 0.00 0.00 34.37 2.92
5065 5442 9.304731 CATTGATTTTTGTATTGATTCACGGAT 57.695 29.630 0.00 0.00 0.00 4.18
5067 5444 7.010367 CCCATTGATTTTTGTATTGATTCACGG 59.990 37.037 0.00 0.00 0.00 4.94
5068 5445 7.464444 GCCCATTGATTTTTGTATTGATTCACG 60.464 37.037 0.00 0.00 0.00 4.35
5069 5446 7.550196 AGCCCATTGATTTTTGTATTGATTCAC 59.450 33.333 0.00 0.00 0.00 3.18
5071 5448 7.983484 AGAGCCCATTGATTTTTGTATTGATTC 59.017 33.333 0.00 0.00 0.00 2.52
5073 5450 7.124599 TCAGAGCCCATTGATTTTTGTATTGAT 59.875 33.333 0.00 0.00 0.00 2.57
5075 5452 6.532657 GTCAGAGCCCATTGATTTTTGTATTG 59.467 38.462 0.00 0.00 0.00 1.90
5077 5454 5.127682 GGTCAGAGCCCATTGATTTTTGTAT 59.872 40.000 0.00 0.00 0.00 2.29
5078 5455 4.462483 GGTCAGAGCCCATTGATTTTTGTA 59.538 41.667 0.00 0.00 0.00 2.41
5079 5456 3.259123 GGTCAGAGCCCATTGATTTTTGT 59.741 43.478 0.00 0.00 0.00 2.83
5080 5457 3.258872 TGGTCAGAGCCCATTGATTTTTG 59.741 43.478 0.00 0.00 0.00 2.44
5081 5458 3.509442 TGGTCAGAGCCCATTGATTTTT 58.491 40.909 0.00 0.00 0.00 1.94
5082 5459 3.173953 TGGTCAGAGCCCATTGATTTT 57.826 42.857 0.00 0.00 0.00 1.82
5083 5460 2.905415 TGGTCAGAGCCCATTGATTT 57.095 45.000 0.00 0.00 0.00 2.17
5084 5461 2.042162 ACTTGGTCAGAGCCCATTGATT 59.958 45.455 0.00 0.00 0.00 2.57
5085 5462 1.637553 ACTTGGTCAGAGCCCATTGAT 59.362 47.619 0.00 0.00 0.00 2.57
5086 5463 1.067295 ACTTGGTCAGAGCCCATTGA 58.933 50.000 0.00 0.00 0.00 2.57
5087 5464 1.915141 AACTTGGTCAGAGCCCATTG 58.085 50.000 0.00 0.00 0.00 2.82
5088 5465 2.619074 GCTAACTTGGTCAGAGCCCATT 60.619 50.000 0.00 0.00 0.00 3.16
5089 5466 1.065126 GCTAACTTGGTCAGAGCCCAT 60.065 52.381 0.00 0.00 0.00 4.00
5090 5467 0.324943 GCTAACTTGGTCAGAGCCCA 59.675 55.000 0.00 0.00 0.00 5.36
5091 5468 0.615850 AGCTAACTTGGTCAGAGCCC 59.384 55.000 0.00 0.00 33.50 5.19
5092 5469 2.481289 AAGCTAACTTGGTCAGAGCC 57.519 50.000 0.00 0.00 33.84 4.70
5093 5470 5.017294 AGATAAGCTAACTTGGTCAGAGC 57.983 43.478 0.00 0.00 36.57 4.09
5094 5471 6.872920 AGAAGATAAGCTAACTTGGTCAGAG 58.127 40.000 5.01 0.00 36.57 3.35
5095 5472 6.859112 AGAAGATAAGCTAACTTGGTCAGA 57.141 37.500 5.01 0.00 36.57 3.27
5096 5473 7.327214 AGAAGAAGATAAGCTAACTTGGTCAG 58.673 38.462 5.01 0.00 36.57 3.51
5097 5474 7.246171 AGAAGAAGATAAGCTAACTTGGTCA 57.754 36.000 5.01 0.00 36.57 4.02
5098 5475 9.654663 TTAAGAAGAAGATAAGCTAACTTGGTC 57.345 33.333 5.01 3.23 36.57 4.02
5112 5489 8.945057 GCTCTGTCTTTTCATTAAGAAGAAGAT 58.055 33.333 0.00 0.00 36.59 2.40
5169 5547 2.924290 GACACTGAGATCTACAAACGGC 59.076 50.000 0.00 0.00 0.00 5.68
5174 5552 3.099905 CTGGGGACACTGAGATCTACAA 58.900 50.000 0.00 0.00 35.60 2.41
5179 5557 0.980231 AGCCTGGGGACACTGAGATC 60.980 60.000 0.00 0.00 35.60 2.75
5201 5583 3.057946 TCATAGCACTATAGCAGCGTCTG 60.058 47.826 10.94 9.92 36.85 3.51
5208 5590 5.299949 CACAATGGTCATAGCACTATAGCA 58.700 41.667 0.00 0.00 36.85 3.49
5214 5596 2.092753 CCTCCACAATGGTCATAGCACT 60.093 50.000 0.00 0.00 39.03 4.40
5215 5597 2.092968 TCCTCCACAATGGTCATAGCAC 60.093 50.000 0.00 0.00 39.03 4.40
5216 5598 2.171237 CTCCTCCACAATGGTCATAGCA 59.829 50.000 0.00 0.00 39.03 3.49
5217 5599 2.486191 CCTCCTCCACAATGGTCATAGC 60.486 54.545 0.00 0.00 39.03 2.97
5218 5600 2.105477 CCCTCCTCCACAATGGTCATAG 59.895 54.545 0.00 0.00 39.03 2.23
5219 5601 2.126882 CCCTCCTCCACAATGGTCATA 58.873 52.381 0.00 0.00 39.03 2.15
5220 5602 0.921896 CCCTCCTCCACAATGGTCAT 59.078 55.000 0.00 0.00 39.03 3.06
5221 5603 1.852157 GCCCTCCTCCACAATGGTCA 61.852 60.000 0.00 0.00 39.03 4.02
5227 5609 3.319198 GACCGCCCTCCTCCACAA 61.319 66.667 0.00 0.00 0.00 3.33
5293 5686 3.057876 TCGTTTCTTCAGAGCTGAGAGAC 60.058 47.826 0.00 5.72 41.13 3.36
5294 5687 3.149981 TCGTTTCTTCAGAGCTGAGAGA 58.850 45.455 0.00 4.73 41.13 3.10
5295 5688 3.190327 TCTCGTTTCTTCAGAGCTGAGAG 59.810 47.826 0.00 3.61 41.13 3.20
5297 5690 3.241701 GTCTCGTTTCTTCAGAGCTGAG 58.758 50.000 0.00 0.00 41.13 3.35
5298 5691 2.623416 TGTCTCGTTTCTTCAGAGCTGA 59.377 45.455 0.00 0.00 37.91 4.26
5299 5692 3.018598 TGTCTCGTTTCTTCAGAGCTG 57.981 47.619 0.00 0.00 32.42 4.24
5326 5727 2.720688 CAGAACTTTGCGCTGCATG 58.279 52.632 9.73 0.00 38.76 4.06
5345 5746 7.994194 AGGAAAATAAGAGCATAAAAGCAGAG 58.006 34.615 0.00 0.00 36.85 3.35
5346 5747 7.944729 AGGAAAATAAGAGCATAAAAGCAGA 57.055 32.000 0.00 0.00 36.85 4.26
5420 5826 1.826385 ACAGGCATTGTGGAGTTAGC 58.174 50.000 0.00 0.00 38.99 3.09
5471 5877 3.114616 CGTGCGTTCAGGGAGCAG 61.115 66.667 0.00 0.00 41.93 4.24
5511 5917 5.595885 TCTATCAAGTTCAGTATCTGCAGC 58.404 41.667 9.47 0.00 0.00 5.25
5512 5918 8.484641 TTTTCTATCAAGTTCAGTATCTGCAG 57.515 34.615 7.63 7.63 0.00 4.41
5529 5935 6.816140 AGCAGCTTCTTCACTACTTTTCTATC 59.184 38.462 0.00 0.00 0.00 2.08
5531 5937 6.102897 AGCAGCTTCTTCACTACTTTTCTA 57.897 37.500 0.00 0.00 0.00 2.10
5549 5955 1.861575 GTAGGCGTTTCAGATAGCAGC 59.138 52.381 0.00 0.00 0.00 5.25
5556 5962 3.751175 CCAAAATCAGTAGGCGTTTCAGA 59.249 43.478 0.00 0.00 0.00 3.27
5565 5971 1.838112 TGGCAGCCAAAATCAGTAGG 58.162 50.000 13.33 0.00 0.00 3.18
5567 5973 2.101783 CCATGGCAGCCAAAATCAGTA 58.898 47.619 20.84 0.00 36.95 2.74
5568 5974 0.899720 CCATGGCAGCCAAAATCAGT 59.100 50.000 20.84 0.00 36.95 3.41
5573 5981 2.285024 GGAGCCATGGCAGCCAAAA 61.285 57.895 37.18 0.00 44.88 2.44
5598 8310 3.469863 GAAGTGTGCACGGGTGGGA 62.470 63.158 13.13 0.00 36.20 4.37
5632 8344 1.679944 GCACAGGCACTCCACATACAT 60.680 52.381 0.00 0.00 40.72 2.29
5633 8345 0.321564 GCACAGGCACTCCACATACA 60.322 55.000 0.00 0.00 40.72 2.29
5634 8346 1.026718 GGCACAGGCACTCCACATAC 61.027 60.000 0.00 0.00 43.71 2.39
5635 8347 1.299648 GGCACAGGCACTCCACATA 59.700 57.895 0.00 0.00 43.71 2.29
5636 8348 2.034687 GGCACAGGCACTCCACAT 59.965 61.111 0.00 0.00 43.71 3.21
5637 8349 4.624364 CGGCACAGGCACTCCACA 62.624 66.667 0.00 0.00 43.71 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.