Multiple sequence alignment - TraesCS2A01G500200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G500200 chr2A 100.000 5701 0 0 1 5701 729282115 729287815 0.000000e+00 10528.0
1 TraesCS2A01G500200 chr2A 91.304 230 17 3 339 565 642587060 642586831 1.540000e-80 311.0
2 TraesCS2A01G500200 chr2A 90.909 231 19 2 337 565 729555015 729555245 5.550000e-80 309.0
3 TraesCS2A01G500200 chr2A 100.000 34 0 0 305 338 729282365 729282398 4.770000e-06 63.9
4 TraesCS2A01G500200 chr2A 100.000 34 0 0 251 284 729282419 729282452 4.770000e-06 63.9
5 TraesCS2A01G500200 chr2D 92.163 3037 165 27 556 3552 595145175 595148178 0.000000e+00 4222.0
6 TraesCS2A01G500200 chr2D 97.498 1239 26 2 3553 4790 595148215 595149449 0.000000e+00 2111.0
7 TraesCS2A01G500200 chr2D 90.011 901 41 13 4805 5701 595149431 595150286 0.000000e+00 1120.0
8 TraesCS2A01G500200 chr2D 86.612 366 24 16 4806 5165 595154052 595154398 1.160000e-101 381.0
9 TraesCS2A01G500200 chr2D 86.857 175 11 7 5504 5677 595154645 595154808 9.750000e-43 185.0
10 TraesCS2A01G500200 chr2D 95.327 107 5 0 4613 4719 595152095 595152201 2.730000e-38 171.0
11 TraesCS2A01G500200 chr2D 82.090 201 20 11 32 227 595144908 595145097 2.130000e-34 158.0
12 TraesCS2A01G500200 chr2B 95.457 1673 71 3 1883 3552 722617664 722619334 0.000000e+00 2663.0
13 TraesCS2A01G500200 chr2B 95.073 1238 44 7 3563 4790 722619388 722620618 0.000000e+00 1932.0
14 TraesCS2A01G500200 chr2B 83.159 1146 84 38 561 1646 722616574 722617670 0.000000e+00 946.0
15 TraesCS2A01G500200 chr2B 87.279 849 77 24 4805 5645 722620600 722621425 0.000000e+00 941.0
16 TraesCS2A01G500200 chr2B 89.407 236 23 2 333 566 72827833 72827598 4.320000e-76 296.0
17 TraesCS2A01G500200 chr3D 91.304 230 17 3 339 565 590751982 590751753 1.540000e-80 311.0
18 TraesCS2A01G500200 chr3D 90.678 118 10 1 2192 2309 423991212 423991096 7.650000e-34 156.0
19 TraesCS2A01G500200 chr6B 90.435 230 20 2 337 564 697927686 697927457 9.280000e-78 302.0
20 TraesCS2A01G500200 chr6A 90.435 230 20 2 339 566 181910076 181909847 9.280000e-78 302.0
21 TraesCS2A01G500200 chr6A 84.810 79 7 4 2190 2266 139047862 139047787 2.200000e-09 75.0
22 TraesCS2A01G500200 chr1B 90.393 229 20 2 339 565 601378580 601378808 3.340000e-77 300.0
23 TraesCS2A01G500200 chr1B 91.964 112 8 1 2192 2303 346283438 346283548 7.650000e-34 156.0
24 TraesCS2A01G500200 chr4A 90.086 232 20 3 339 567 729868892 729869123 1.200000e-76 298.0
25 TraesCS2A01G500200 chr3B 90.043 231 21 2 339 567 623667356 623667586 1.200000e-76 298.0
26 TraesCS2A01G500200 chr4B 91.071 112 9 1 2192 2303 536489041 536489151 3.560000e-32 150.0
27 TraesCS2A01G500200 chr7D 84.810 79 7 4 2190 2266 400222159 400222084 2.200000e-09 75.0
28 TraesCS2A01G500200 chr5B 90.244 41 4 0 5356 5396 567887545 567887505 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G500200 chr2A 729282115 729287815 5700 False 10528.000000 10528 100.000000 1 5701 1 chr2A.!!$F1 5700
1 TraesCS2A01G500200 chr2D 595144908 595154808 9900 False 1192.571429 4222 90.079714 32 5701 7 chr2D.!!$F1 5669
2 TraesCS2A01G500200 chr2B 722616574 722621425 4851 False 1620.500000 2663 90.242000 561 5645 4 chr2B.!!$F1 5084

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
539 555 0.023732 CGCGTCTGTATGAGCGTTTG 59.976 55.0 0.00 0.00 46.48 2.93 F
812 838 0.027586 CAAGGTAATTACGCGCTGCC 59.972 55.0 5.73 1.01 0.00 4.85 F
1449 1547 0.028770 TTTGCGCTTTGGAACTGACG 59.971 50.0 9.73 0.00 0.00 4.35 F
2153 2279 0.250510 TGGTTGACTGTTGCCGCATA 60.251 50.0 0.00 0.00 0.00 3.14 F
2310 2438 1.618861 CTTCCTAGTGAACTGTCGCG 58.381 55.0 0.00 0.00 39.38 5.87 F
4174 4346 0.035176 TCCGGGTACGAACTTTTGGG 59.965 55.0 0.00 0.00 44.60 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1430 1525 0.028770 CGTCAGTTCCAAAGCGCAAA 59.971 50.000 11.47 0.0 0.00 3.68 R
2332 2460 1.066215 ACTGCGTGTATCTGGATTGCA 60.066 47.619 0.00 0.0 0.00 4.08 R
3438 3567 0.310854 CCAAGTTTGTCCGTTCTGCC 59.689 55.000 0.00 0.0 0.00 4.85 R
4069 4241 1.896660 ACCACCAACACGCCATGTC 60.897 57.895 0.00 0.0 42.31 3.06 R
4282 4454 4.141937 ACGGCATATGCAGAAAGAGAAGTA 60.142 41.667 30.65 0.0 44.36 2.24 R
5436 5633 0.398318 ACTGGTCTGAAGCCTGAACC 59.602 55.000 0.00 0.0 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.364318 TAGAGGAGTCTGCTGCCC 57.636 61.111 0.00 0.00 33.84 5.36
18 19 1.381872 TAGAGGAGTCTGCTGCCCC 60.382 63.158 0.00 0.00 33.84 5.80
19 20 2.168272 TAGAGGAGTCTGCTGCCCCA 62.168 60.000 0.00 0.00 33.84 4.96
20 21 2.530151 AGGAGTCTGCTGCCCCAA 60.530 61.111 0.00 0.00 33.13 4.12
21 22 2.045536 GGAGTCTGCTGCCCCAAG 60.046 66.667 0.00 0.00 0.00 3.61
22 23 2.596851 GGAGTCTGCTGCCCCAAGA 61.597 63.158 0.00 0.00 0.00 3.02
23 24 1.376553 GAGTCTGCTGCCCCAAGAC 60.377 63.158 9.18 9.18 0.00 3.01
24 25 2.116983 GAGTCTGCTGCCCCAAGACA 62.117 60.000 16.93 0.00 32.46 3.41
25 26 1.001641 GTCTGCTGCCCCAAGACAT 60.002 57.895 11.61 0.00 0.00 3.06
26 27 1.001764 TCTGCTGCCCCAAGACATG 60.002 57.895 0.00 0.00 0.00 3.21
54 55 2.038387 ATTCAGGCGCTAACCGAATT 57.962 45.000 7.64 0.00 40.02 2.17
105 106 3.745975 CACTCGTTAGAAAAGTCCATGCA 59.254 43.478 0.00 0.00 0.00 3.96
133 134 0.892755 ATCCAGACGCCAAACGACTA 59.107 50.000 0.00 0.00 44.94 2.59
134 135 0.242825 TCCAGACGCCAAACGACTAG 59.757 55.000 0.00 0.00 44.94 2.57
135 136 1.352156 CCAGACGCCAAACGACTAGC 61.352 60.000 0.00 0.00 44.94 3.42
136 137 0.388649 CAGACGCCAAACGACTAGCT 60.389 55.000 0.00 0.00 44.94 3.32
137 138 0.317479 AGACGCCAAACGACTAGCTT 59.683 50.000 0.00 0.00 44.89 3.74
138 139 1.935300 AGACGCCAAACGACTAGCTTG 60.935 52.381 0.00 0.00 44.89 4.01
139 140 4.225864 AGACGCCAAACGACTAGCTTGA 62.226 50.000 1.04 0.00 44.89 3.02
141 142 1.508632 GCCAAACGACTAGCTTGACA 58.491 50.000 1.04 0.00 0.00 3.58
147 148 5.580691 CCAAACGACTAGCTTGACATCAATA 59.419 40.000 1.04 0.00 35.02 1.90
158 159 5.782047 CTTGACATCAATACCAGCCAAAAA 58.218 37.500 0.00 0.00 35.02 1.94
160 161 4.586421 TGACATCAATACCAGCCAAAAACA 59.414 37.500 0.00 0.00 0.00 2.83
161 162 4.881920 ACATCAATACCAGCCAAAAACAC 58.118 39.130 0.00 0.00 0.00 3.32
162 163 4.343526 ACATCAATACCAGCCAAAAACACA 59.656 37.500 0.00 0.00 0.00 3.72
169 170 2.548493 CCAGCCAAAAACACAGGATTGG 60.548 50.000 0.00 0.00 44.09 3.16
170 171 2.364970 CAGCCAAAAACACAGGATTGGA 59.635 45.455 7.53 0.00 44.01 3.53
172 173 2.862140 GCCAAAAACACAGGATTGGACG 60.862 50.000 7.53 0.00 44.01 4.79
182 183 3.202151 ACAGGATTGGACGGGATTACATT 59.798 43.478 0.00 0.00 0.00 2.71
183 184 3.565482 CAGGATTGGACGGGATTACATTG 59.435 47.826 0.00 0.00 0.00 2.82
237 238 4.268939 CCGCGTTCGCCCCGTATA 62.269 66.667 4.92 0.00 0.00 1.47
238 239 2.049802 CGCGTTCGCCCCGTATAT 60.050 61.111 11.51 0.00 0.00 0.86
239 240 1.209898 CGCGTTCGCCCCGTATATA 59.790 57.895 11.51 0.00 0.00 0.86
241 242 0.733909 GCGTTCGCCCCGTATATACC 60.734 60.000 7.30 0.00 0.00 2.73
244 260 0.178938 TTCGCCCCGTATATACCCCA 60.179 55.000 7.30 0.00 0.00 4.96
272 288 1.444895 CTGCAAATGCCAACGCTCC 60.445 57.895 2.46 0.00 41.18 4.70
280 296 1.681538 TGCCAACGCTCCAAAAAGTA 58.318 45.000 0.00 0.00 35.36 2.24
281 297 2.235016 TGCCAACGCTCCAAAAAGTAT 58.765 42.857 0.00 0.00 35.36 2.12
285 301 3.911964 CCAACGCTCCAAAAAGTATTTCG 59.088 43.478 0.00 0.00 37.28 3.46
286 302 4.533222 CAACGCTCCAAAAAGTATTTCGT 58.467 39.130 0.00 0.00 37.28 3.85
288 304 5.927954 ACGCTCCAAAAAGTATTTCGTTA 57.072 34.783 0.00 0.00 37.28 3.18
289 305 5.923665 ACGCTCCAAAAAGTATTTCGTTAG 58.076 37.500 0.00 0.00 37.28 2.34
290 306 4.786575 CGCTCCAAAAAGTATTTCGTTAGC 59.213 41.667 0.00 0.00 37.28 3.09
291 307 4.786575 GCTCCAAAAAGTATTTCGTTAGCG 59.213 41.667 0.00 0.00 37.28 4.26
292 308 5.390145 GCTCCAAAAAGTATTTCGTTAGCGA 60.390 40.000 0.00 0.00 46.36 4.93
305 321 3.373611 CGTTAGCGAACCAACTTGTGGA 61.374 50.000 3.98 0.00 45.56 4.02
306 322 5.180791 CGTTAGCGAACCAACTTGTGGAG 62.181 52.174 3.98 0.00 45.56 3.86
312 328 4.162592 CAACTTGTGGAGGCTGCA 57.837 55.556 3.93 3.93 0.00 4.41
313 329 2.417978 CAACTTGTGGAGGCTGCAA 58.582 52.632 11.29 2.93 0.00 4.08
314 330 0.746063 CAACTTGTGGAGGCTGCAAA 59.254 50.000 11.29 1.15 0.00 3.68
315 331 1.342174 CAACTTGTGGAGGCTGCAAAT 59.658 47.619 11.29 0.00 0.00 2.32
316 332 0.963962 ACTTGTGGAGGCTGCAAATG 59.036 50.000 11.29 10.55 0.00 2.32
317 333 0.389426 CTTGTGGAGGCTGCAAATGC 60.389 55.000 11.29 0.00 42.50 3.56
324 340 2.048877 GCTGCAAATGCCAACGCT 60.049 55.556 2.46 0.00 41.18 5.07
325 341 2.090524 GCTGCAAATGCCAACGCTC 61.091 57.895 2.46 0.00 41.18 5.03
326 342 1.444895 CTGCAAATGCCAACGCTCC 60.445 57.895 2.46 0.00 41.18 4.70
327 343 2.144833 CTGCAAATGCCAACGCTCCA 62.145 55.000 2.46 0.00 41.18 3.86
328 344 1.006337 GCAAATGCCAACGCTCCAA 60.006 52.632 0.00 0.00 35.36 3.53
329 345 0.599728 GCAAATGCCAACGCTCCAAA 60.600 50.000 0.00 0.00 35.36 3.28
330 346 1.863267 CAAATGCCAACGCTCCAAAA 58.137 45.000 0.00 0.00 35.36 2.44
331 347 2.208431 CAAATGCCAACGCTCCAAAAA 58.792 42.857 0.00 0.00 35.36 1.94
332 348 2.153366 AATGCCAACGCTCCAAAAAG 57.847 45.000 0.00 0.00 35.36 2.27
333 349 1.039856 ATGCCAACGCTCCAAAAAGT 58.960 45.000 0.00 0.00 35.36 2.66
334 350 1.681538 TGCCAACGCTCCAAAAAGTA 58.318 45.000 0.00 0.00 35.36 2.24
335 351 2.235016 TGCCAACGCTCCAAAAAGTAT 58.765 42.857 0.00 0.00 35.36 2.12
336 352 2.625790 TGCCAACGCTCCAAAAAGTATT 59.374 40.909 0.00 0.00 35.36 1.89
337 353 3.068873 TGCCAACGCTCCAAAAAGTATTT 59.931 39.130 0.00 0.00 36.15 1.40
338 354 3.428534 GCCAACGCTCCAAAAAGTATTTG 59.571 43.478 0.00 0.00 39.02 2.32
339 355 3.428534 CCAACGCTCCAAAAAGTATTTGC 59.571 43.478 0.00 0.00 39.02 3.68
340 356 4.047822 CAACGCTCCAAAAAGTATTTGCA 58.952 39.130 0.00 0.00 39.02 4.08
341 357 4.519540 ACGCTCCAAAAAGTATTTGCAT 57.480 36.364 0.00 0.00 39.02 3.96
342 358 4.881920 ACGCTCCAAAAAGTATTTGCATT 58.118 34.783 0.00 0.00 39.02 3.56
343 359 6.019779 ACGCTCCAAAAAGTATTTGCATTA 57.980 33.333 0.00 0.00 39.02 1.90
344 360 6.630071 ACGCTCCAAAAAGTATTTGCATTAT 58.370 32.000 0.00 0.00 39.02 1.28
345 361 7.096551 ACGCTCCAAAAAGTATTTGCATTATT 58.903 30.769 0.00 0.00 39.02 1.40
346 362 7.602265 ACGCTCCAAAAAGTATTTGCATTATTT 59.398 29.630 0.00 0.00 39.02 1.40
347 363 8.110002 CGCTCCAAAAAGTATTTGCATTATTTC 58.890 33.333 0.00 0.00 39.02 2.17
348 364 9.154847 GCTCCAAAAAGTATTTGCATTATTTCT 57.845 29.630 0.00 0.00 39.02 2.52
371 387 9.787532 TTCTAAATTTATTTCAGGATTTCAGCG 57.212 29.630 0.00 0.00 0.00 5.18
372 388 9.173021 TCTAAATTTATTTCAGGATTTCAGCGA 57.827 29.630 0.00 0.00 0.00 4.93
373 389 9.956720 CTAAATTTATTTCAGGATTTCAGCGAT 57.043 29.630 0.00 0.00 0.00 4.58
374 390 8.638685 AAATTTATTTCAGGATTTCAGCGATG 57.361 30.769 0.00 0.00 0.00 3.84
375 391 3.705043 ATTTCAGGATTTCAGCGATGC 57.295 42.857 0.00 0.00 0.00 3.91
376 392 1.009078 TTCAGGATTTCAGCGATGCG 58.991 50.000 0.00 0.00 0.00 4.73
377 393 0.108186 TCAGGATTTCAGCGATGCGT 60.108 50.000 0.00 0.00 0.00 5.24
378 394 0.729116 CAGGATTTCAGCGATGCGTT 59.271 50.000 0.00 0.00 0.00 4.84
379 395 1.131126 CAGGATTTCAGCGATGCGTTT 59.869 47.619 0.00 0.00 0.00 3.60
380 396 1.812571 AGGATTTCAGCGATGCGTTTT 59.187 42.857 0.00 0.00 0.00 2.43
381 397 2.159517 AGGATTTCAGCGATGCGTTTTC 60.160 45.455 0.00 0.00 0.00 2.29
382 398 2.414029 GGATTTCAGCGATGCGTTTTCA 60.414 45.455 0.00 0.00 0.00 2.69
383 399 2.987413 TTTCAGCGATGCGTTTTCAT 57.013 40.000 0.00 0.00 0.00 2.57
384 400 2.987413 TTCAGCGATGCGTTTTCATT 57.013 40.000 0.00 0.00 0.00 2.57
385 401 4.411993 TTTCAGCGATGCGTTTTCATTA 57.588 36.364 0.00 0.00 0.00 1.90
386 402 3.656651 TCAGCGATGCGTTTTCATTAG 57.343 42.857 0.00 0.00 0.00 1.73
387 403 2.351418 TCAGCGATGCGTTTTCATTAGG 59.649 45.455 0.00 0.00 0.00 2.69
388 404 2.351418 CAGCGATGCGTTTTCATTAGGA 59.649 45.455 0.00 0.00 0.00 2.94
389 405 2.609459 AGCGATGCGTTTTCATTAGGAG 59.391 45.455 0.00 0.00 0.00 3.69
390 406 2.286418 GCGATGCGTTTTCATTAGGAGG 60.286 50.000 0.00 0.00 0.00 4.30
391 407 3.194861 CGATGCGTTTTCATTAGGAGGA 58.805 45.455 0.00 0.00 0.00 3.71
392 408 3.246226 CGATGCGTTTTCATTAGGAGGAG 59.754 47.826 0.00 0.00 0.00 3.69
393 409 3.973206 TGCGTTTTCATTAGGAGGAGA 57.027 42.857 0.00 0.00 0.00 3.71
394 410 3.596214 TGCGTTTTCATTAGGAGGAGAC 58.404 45.455 0.00 0.00 0.00 3.36
395 411 2.603560 GCGTTTTCATTAGGAGGAGACG 59.396 50.000 0.00 0.00 33.27 4.18
396 412 3.846360 CGTTTTCATTAGGAGGAGACGT 58.154 45.455 0.00 0.00 0.00 4.34
397 413 4.243270 CGTTTTCATTAGGAGGAGACGTT 58.757 43.478 0.00 0.00 0.00 3.99
398 414 4.689345 CGTTTTCATTAGGAGGAGACGTTT 59.311 41.667 0.00 0.00 0.00 3.60
399 415 5.178809 CGTTTTCATTAGGAGGAGACGTTTT 59.821 40.000 0.00 0.00 0.00 2.43
400 416 6.600350 GTTTTCATTAGGAGGAGACGTTTTC 58.400 40.000 0.00 0.00 0.00 2.29
421 437 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
424 440 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
426 442 4.849329 CGAGGCGCCTACGGTGAC 62.849 72.222 32.97 14.51 42.50 3.67
429 445 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
430 446 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
431 447 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
432 448 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
433 449 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
434 450 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
435 451 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
436 452 3.256558 GCCTACGGTGACTTCGTAAATT 58.743 45.455 0.00 0.00 41.62 1.82
437 453 3.681417 GCCTACGGTGACTTCGTAAATTT 59.319 43.478 0.00 0.00 41.62 1.82
438 454 4.201656 GCCTACGGTGACTTCGTAAATTTC 60.202 45.833 0.00 0.00 41.62 2.17
439 455 4.925054 CCTACGGTGACTTCGTAAATTTCA 59.075 41.667 0.00 0.00 41.62 2.69
440 456 5.406175 CCTACGGTGACTTCGTAAATTTCAA 59.594 40.000 0.00 0.00 41.62 2.69
441 457 5.338614 ACGGTGACTTCGTAAATTTCAAG 57.661 39.130 0.00 0.00 39.22 3.02
442 458 5.051816 ACGGTGACTTCGTAAATTTCAAGA 58.948 37.500 0.00 0.00 39.22 3.02
443 459 5.699458 ACGGTGACTTCGTAAATTTCAAGAT 59.301 36.000 0.00 0.00 39.22 2.40
444 460 6.015504 CGGTGACTTCGTAAATTTCAAGATG 58.984 40.000 0.00 0.00 0.00 2.90
445 461 6.128661 CGGTGACTTCGTAAATTTCAAGATGA 60.129 38.462 0.00 0.00 0.00 2.92
446 462 7.015877 GGTGACTTCGTAAATTTCAAGATGAC 58.984 38.462 0.00 0.00 0.00 3.06
447 463 7.307751 GGTGACTTCGTAAATTTCAAGATGACA 60.308 37.037 0.00 0.26 0.00 3.58
448 464 8.230486 GTGACTTCGTAAATTTCAAGATGACAT 58.770 33.333 0.00 0.00 0.00 3.06
449 465 8.229811 TGACTTCGTAAATTTCAAGATGACATG 58.770 33.333 0.00 0.00 0.00 3.21
450 466 7.023575 ACTTCGTAAATTTCAAGATGACATGC 58.976 34.615 0.00 0.00 0.00 4.06
451 467 5.879237 TCGTAAATTTCAAGATGACATGCC 58.121 37.500 0.00 0.00 0.00 4.40
452 468 4.730042 CGTAAATTTCAAGATGACATGCCG 59.270 41.667 0.00 0.00 0.00 5.69
453 469 3.788333 AATTTCAAGATGACATGCCGG 57.212 42.857 0.00 0.00 0.00 6.13
454 470 0.810648 TTTCAAGATGACATGCCGGC 59.189 50.000 22.73 22.73 0.00 6.13
455 471 0.035152 TTCAAGATGACATGCCGGCT 60.035 50.000 29.70 7.33 0.00 5.52
456 472 0.462581 TCAAGATGACATGCCGGCTC 60.463 55.000 29.70 17.89 0.00 4.70
457 473 0.745486 CAAGATGACATGCCGGCTCA 60.745 55.000 29.70 23.34 0.00 4.26
458 474 0.463295 AAGATGACATGCCGGCTCAG 60.463 55.000 29.70 19.20 0.00 3.35
459 475 1.153289 GATGACATGCCGGCTCAGT 60.153 57.895 29.70 22.43 0.00 3.41
460 476 1.153289 ATGACATGCCGGCTCAGTC 60.153 57.895 29.70 28.59 0.00 3.51
461 477 1.620739 ATGACATGCCGGCTCAGTCT 61.621 55.000 31.39 20.84 0.00 3.24
462 478 1.520342 GACATGCCGGCTCAGTCTC 60.520 63.158 29.70 9.51 0.00 3.36
463 479 1.954362 GACATGCCGGCTCAGTCTCT 61.954 60.000 29.70 0.81 0.00 3.10
464 480 1.227205 CATGCCGGCTCAGTCTCTC 60.227 63.158 29.70 0.00 0.00 3.20
465 481 2.780094 ATGCCGGCTCAGTCTCTCG 61.780 63.158 29.70 0.00 0.00 4.04
466 482 4.200283 GCCGGCTCAGTCTCTCGG 62.200 72.222 22.15 0.00 43.13 4.63
467 483 2.438614 CCGGCTCAGTCTCTCGGA 60.439 66.667 0.00 0.00 42.94 4.55
468 484 2.477176 CCGGCTCAGTCTCTCGGAG 61.477 68.421 0.00 0.00 42.94 4.63
469 485 2.477176 CGGCTCAGTCTCTCGGAGG 61.477 68.421 4.96 0.00 38.48 4.30
470 486 1.379309 GGCTCAGTCTCTCGGAGGT 60.379 63.158 4.96 0.00 38.48 3.85
471 487 1.662438 GGCTCAGTCTCTCGGAGGTG 61.662 65.000 4.96 0.00 38.48 4.00
472 488 1.806568 CTCAGTCTCTCGGAGGTGC 59.193 63.158 4.96 0.00 35.32 5.01
473 489 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
474 490 0.678366 TCAGTCTCTCGGAGGTGCTC 60.678 60.000 4.96 0.00 0.00 4.26
475 491 0.962855 CAGTCTCTCGGAGGTGCTCA 60.963 60.000 4.96 0.00 31.08 4.26
476 492 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.000 4.96 0.00 31.08 2.90
477 493 1.213182 AGTCTCTCGGAGGTGCTCATA 59.787 52.381 4.96 0.00 31.08 2.15
478 494 1.606668 GTCTCTCGGAGGTGCTCATAG 59.393 57.143 4.96 0.00 31.08 2.23
479 495 1.490910 TCTCTCGGAGGTGCTCATAGA 59.509 52.381 4.96 0.00 31.08 1.98
480 496 1.879380 CTCTCGGAGGTGCTCATAGAG 59.121 57.143 4.96 0.00 35.86 2.43
481 497 0.958091 CTCGGAGGTGCTCATAGAGG 59.042 60.000 0.00 0.00 31.08 3.69
482 498 0.259065 TCGGAGGTGCTCATAGAGGT 59.741 55.000 0.00 0.00 31.08 3.85
483 499 1.493446 TCGGAGGTGCTCATAGAGGTA 59.507 52.381 0.00 0.00 31.08 3.08
484 500 1.883275 CGGAGGTGCTCATAGAGGTAG 59.117 57.143 0.00 0.00 31.08 3.18
485 501 2.243810 GGAGGTGCTCATAGAGGTAGG 58.756 57.143 0.00 0.00 31.08 3.18
486 502 2.158445 GGAGGTGCTCATAGAGGTAGGA 60.158 54.545 0.00 0.00 31.08 2.94
487 503 3.501385 GGAGGTGCTCATAGAGGTAGGAT 60.501 52.174 0.00 0.00 31.08 3.24
488 504 3.505386 AGGTGCTCATAGAGGTAGGATG 58.495 50.000 0.00 0.00 0.00 3.51
489 505 3.116939 AGGTGCTCATAGAGGTAGGATGT 60.117 47.826 0.00 0.00 0.00 3.06
490 506 3.006323 GGTGCTCATAGAGGTAGGATGTG 59.994 52.174 0.00 0.00 0.00 3.21
491 507 2.630098 TGCTCATAGAGGTAGGATGTGC 59.370 50.000 0.00 0.00 39.41 4.57
492 508 2.352225 GCTCATAGAGGTAGGATGTGCG 60.352 54.545 0.00 0.00 32.41 5.34
493 509 2.887783 CTCATAGAGGTAGGATGTGCGT 59.112 50.000 0.00 0.00 0.00 5.24
494 510 2.623416 TCATAGAGGTAGGATGTGCGTG 59.377 50.000 0.00 0.00 0.00 5.34
495 511 2.139323 TAGAGGTAGGATGTGCGTGT 57.861 50.000 0.00 0.00 0.00 4.49
496 512 0.532573 AGAGGTAGGATGTGCGTGTG 59.467 55.000 0.00 0.00 0.00 3.82
497 513 0.246635 GAGGTAGGATGTGCGTGTGT 59.753 55.000 0.00 0.00 0.00 3.72
498 514 0.037326 AGGTAGGATGTGCGTGTGTG 60.037 55.000 0.00 0.00 0.00 3.82
499 515 1.635663 GGTAGGATGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
500 516 1.736282 TAGGATGTGCGTGTGTGCG 60.736 57.895 0.00 0.00 37.81 5.34
501 517 2.428960 TAGGATGTGCGTGTGTGCGT 62.429 55.000 0.00 0.00 37.81 5.24
502 518 2.170985 GATGTGCGTGTGTGCGTC 59.829 61.111 0.00 0.00 37.81 5.19
503 519 2.587473 ATGTGCGTGTGTGCGTCA 60.587 55.556 0.00 0.00 37.81 4.35
504 520 1.900585 GATGTGCGTGTGTGCGTCAT 61.901 55.000 0.00 0.00 37.81 3.06
505 521 0.669012 ATGTGCGTGTGTGCGTCATA 60.669 50.000 0.00 0.00 37.81 2.15
506 522 1.281566 TGTGCGTGTGTGCGTCATAG 61.282 55.000 0.00 0.00 37.81 2.23
507 523 1.736282 TGCGTGTGTGCGTCATAGG 60.736 57.895 0.00 0.00 37.81 2.57
508 524 1.445410 GCGTGTGTGCGTCATAGGA 60.445 57.895 3.31 0.00 0.00 2.94
509 525 1.011968 GCGTGTGTGCGTCATAGGAA 61.012 55.000 3.31 0.00 0.00 3.36
510 526 1.640428 CGTGTGTGCGTCATAGGAAT 58.360 50.000 0.00 0.00 0.00 3.01
511 527 1.324435 CGTGTGTGCGTCATAGGAATG 59.676 52.381 0.00 0.00 0.00 2.67
512 528 2.616960 GTGTGTGCGTCATAGGAATGA 58.383 47.619 0.00 0.00 39.87 2.57
513 529 2.604914 GTGTGTGCGTCATAGGAATGAG 59.395 50.000 0.00 0.00 42.80 2.90
514 530 2.233676 TGTGTGCGTCATAGGAATGAGT 59.766 45.455 0.00 0.00 42.80 3.41
515 531 2.604914 GTGTGCGTCATAGGAATGAGTG 59.395 50.000 0.00 0.00 42.80 3.51
516 532 2.233676 TGTGCGTCATAGGAATGAGTGT 59.766 45.455 0.00 0.00 42.80 3.55
517 533 3.445805 TGTGCGTCATAGGAATGAGTGTA 59.554 43.478 0.00 0.00 42.80 2.90
518 534 4.099419 TGTGCGTCATAGGAATGAGTGTAT 59.901 41.667 0.00 0.00 42.80 2.29
519 535 4.445718 GTGCGTCATAGGAATGAGTGTATG 59.554 45.833 0.00 0.00 42.80 2.39
520 536 3.430218 GCGTCATAGGAATGAGTGTATGC 59.570 47.826 0.00 0.00 42.80 3.14
521 537 3.670523 CGTCATAGGAATGAGTGTATGCG 59.329 47.826 0.00 0.00 42.80 4.73
522 538 3.430218 GTCATAGGAATGAGTGTATGCGC 59.570 47.826 0.00 0.00 42.80 6.09
523 539 2.134201 TAGGAATGAGTGTATGCGCG 57.866 50.000 0.00 0.00 0.00 6.86
524 540 0.175760 AGGAATGAGTGTATGCGCGT 59.824 50.000 8.43 7.55 0.00 6.01
525 541 0.577269 GGAATGAGTGTATGCGCGTC 59.423 55.000 4.79 0.00 0.00 5.19
526 542 1.560923 GAATGAGTGTATGCGCGTCT 58.439 50.000 4.79 0.00 0.00 4.18
527 543 1.256376 GAATGAGTGTATGCGCGTCTG 59.744 52.381 4.79 0.00 0.00 3.51
528 544 0.173481 ATGAGTGTATGCGCGTCTGT 59.827 50.000 4.79 0.00 0.00 3.41
529 545 0.806241 TGAGTGTATGCGCGTCTGTA 59.194 50.000 4.79 0.00 0.00 2.74
530 546 1.404035 TGAGTGTATGCGCGTCTGTAT 59.596 47.619 4.79 0.00 0.00 2.29
531 547 1.781429 GAGTGTATGCGCGTCTGTATG 59.219 52.381 4.79 0.00 0.00 2.39
532 548 1.404035 AGTGTATGCGCGTCTGTATGA 59.596 47.619 4.79 0.00 0.00 2.15
533 549 1.781429 GTGTATGCGCGTCTGTATGAG 59.219 52.381 4.79 0.00 0.00 2.90
534 550 0.778815 GTATGCGCGTCTGTATGAGC 59.221 55.000 4.79 0.00 37.87 4.26
537 553 4.072913 CGCGTCTGTATGAGCGTT 57.927 55.556 0.00 0.00 46.48 4.84
538 554 2.359792 CGCGTCTGTATGAGCGTTT 58.640 52.632 0.00 0.00 46.48 3.60
539 555 0.023732 CGCGTCTGTATGAGCGTTTG 59.976 55.000 0.00 0.00 46.48 2.93
540 556 0.247301 GCGTCTGTATGAGCGTTTGC 60.247 55.000 0.00 0.00 43.24 3.68
550 566 4.925786 GCGTTTGCGTCTGTATCG 57.074 55.556 0.00 0.00 40.81 2.92
551 567 2.355797 GCGTTTGCGTCTGTATCGA 58.644 52.632 0.00 0.00 40.81 3.59
552 568 0.921347 GCGTTTGCGTCTGTATCGAT 59.079 50.000 2.16 2.16 40.81 3.59
553 569 1.331161 GCGTTTGCGTCTGTATCGATG 60.331 52.381 8.54 0.00 40.81 3.84
554 570 1.917955 CGTTTGCGTCTGTATCGATGT 59.082 47.619 8.54 0.00 0.00 3.06
555 571 2.344441 CGTTTGCGTCTGTATCGATGTT 59.656 45.455 8.54 0.00 0.00 2.71
556 572 3.544682 CGTTTGCGTCTGTATCGATGTTA 59.455 43.478 8.54 0.00 0.00 2.41
557 573 4.030865 CGTTTGCGTCTGTATCGATGTTAA 59.969 41.667 8.54 0.00 0.00 2.01
558 574 5.443562 CGTTTGCGTCTGTATCGATGTTAAA 60.444 40.000 8.54 0.00 0.00 1.52
559 575 6.301108 GTTTGCGTCTGTATCGATGTTAAAA 58.699 36.000 8.54 0.00 0.00 1.52
591 607 2.106074 TTAAGCGCATGTCCGGCTG 61.106 57.895 11.47 0.00 37.06 4.85
662 678 2.094700 TCTTGTCGAAGAATCCCGTCTG 60.095 50.000 0.00 0.00 39.69 3.51
704 730 3.739613 GTGAAAGGGGCCCGGGAT 61.740 66.667 29.31 2.75 0.00 3.85
705 731 3.416880 TGAAAGGGGCCCGGGATC 61.417 66.667 29.31 15.84 0.00 3.36
706 732 4.564110 GAAAGGGGCCCGGGATCG 62.564 72.222 29.31 0.00 0.00 3.69
812 838 0.027586 CAAGGTAATTACGCGCTGCC 59.972 55.000 5.73 1.01 0.00 4.85
828 854 2.687566 CCCCGAGGGCCTAAGTGT 60.688 66.667 5.73 0.00 35.35 3.55
982 1045 4.436998 CTCGGGTCGGTGAGTGGC 62.437 72.222 0.00 0.00 0.00 5.01
987 1050 4.436998 GTCGGTGAGTGGCCTCGG 62.437 72.222 3.32 0.00 40.85 4.63
1100 1163 0.034089 CCCGGAATCTCTTTTGCCCT 60.034 55.000 0.73 0.00 0.00 5.19
1165 1241 2.530832 TCGTCGTCAATTCGATTCGA 57.469 45.000 4.29 4.29 41.78 3.71
1166 1242 3.060978 TCGTCGTCAATTCGATTCGAT 57.939 42.857 9.96 0.00 41.78 3.59
1167 1243 3.431856 TCGTCGTCAATTCGATTCGATT 58.568 40.909 9.96 3.49 41.78 3.34
1168 1244 3.481028 TCGTCGTCAATTCGATTCGATTC 59.519 43.478 9.96 0.00 41.78 2.52
1169 1245 3.653301 CGTCGTCAATTCGATTCGATTCG 60.653 47.826 20.58 20.58 41.78 3.34
1170 1246 2.787129 TCGTCAATTCGATTCGATTCGG 59.213 45.455 24.57 12.02 39.56 4.30
1171 1247 2.097396 CGTCAATTCGATTCGATTCGGG 60.097 50.000 24.57 14.30 39.56 5.14
1172 1248 3.120792 GTCAATTCGATTCGATTCGGGA 58.879 45.455 24.57 16.07 39.56 5.14
1177 1253 4.718455 TTCGATTCGATTCGGGACGCAT 62.718 50.000 24.57 0.00 44.45 4.73
1223 1313 1.396996 GTGCGGTGGTAAATGCAGTAG 59.603 52.381 0.00 0.00 38.14 2.57
1225 1315 2.081462 GCGGTGGTAAATGCAGTAGTT 58.919 47.619 0.00 0.00 0.00 2.24
1227 1317 2.676342 CGGTGGTAAATGCAGTAGTTCC 59.324 50.000 0.00 0.00 0.00 3.62
1286 1376 3.499737 GCGGCCTGGAACATCACG 61.500 66.667 0.00 0.00 38.20 4.35
1307 1397 3.846360 GCGGATTTAGCGTATGGAGTAT 58.154 45.455 0.00 0.00 0.00 2.12
1319 1409 2.890808 TGGAGTATTGGTGATCTCGC 57.109 50.000 0.00 0.00 0.00 5.03
1349 1444 2.176889 CGAGGAGGTGTTTCCCTTCTA 58.823 52.381 0.00 0.00 40.80 2.10
1355 1450 4.470304 GGAGGTGTTTCCCTTCTATGTAGT 59.530 45.833 0.00 0.00 34.03 2.73
1367 1462 8.358148 TCCCTTCTATGTAGTTCATAATCGTTC 58.642 37.037 0.00 0.00 38.38 3.95
1449 1547 0.028770 TTTGCGCTTTGGAACTGACG 59.971 50.000 9.73 0.00 0.00 4.35
1450 1548 2.127232 GCGCTTTGGAACTGACGC 60.127 61.111 0.00 0.00 39.49 5.19
1466 1564 0.314935 ACGCATTTTGGCTGGAGTTG 59.685 50.000 0.00 0.00 0.00 3.16
1516 1628 5.237779 ACATTCAACACCTAATTTCGTTCGT 59.762 36.000 0.00 0.00 0.00 3.85
1526 1638 2.589798 TTTCGTTCGTCAAGACACCT 57.410 45.000 0.72 0.00 0.00 4.00
1594 1713 7.923414 ATACCTTGTTGTCTTGAGTAAATCC 57.077 36.000 0.00 0.00 0.00 3.01
1596 1715 6.306987 ACCTTGTTGTCTTGAGTAAATCCAT 58.693 36.000 0.00 0.00 0.00 3.41
1608 1727 3.813166 AGTAAATCCATGGTTATTCGGCG 59.187 43.478 12.58 0.00 0.00 6.46
1610 1729 0.889186 ATCCATGGTTATTCGGCGCC 60.889 55.000 19.07 19.07 0.00 6.53
1640 1759 4.515028 ATGAATCCTTGGCATTCTGAGA 57.485 40.909 0.00 0.00 32.32 3.27
1650 1769 6.206243 CCTTGGCATTCTGAGATGGTAAATAG 59.794 42.308 0.00 0.00 0.00 1.73
1651 1770 5.065914 TGGCATTCTGAGATGGTAAATAGC 58.934 41.667 0.00 0.00 0.00 2.97
1679 1798 2.787473 TCCTGTTGGGAATGCTAGTG 57.213 50.000 0.00 0.00 41.91 2.74
1710 1829 5.324409 TGAGACAACCTTAATGATGCCTTT 58.676 37.500 0.00 0.00 0.00 3.11
1712 1831 6.945435 TGAGACAACCTTAATGATGCCTTTTA 59.055 34.615 0.00 0.00 0.00 1.52
1742 1867 2.363683 GTTCAGAATCAGGGGAAGCAG 58.636 52.381 0.00 0.00 0.00 4.24
1754 1879 2.695147 GGGGAAGCAGGTTAATGAATGG 59.305 50.000 0.00 0.00 0.00 3.16
1755 1880 2.101415 GGGAAGCAGGTTAATGAATGGC 59.899 50.000 0.00 0.00 0.00 4.40
1756 1881 2.760092 GGAAGCAGGTTAATGAATGGCA 59.240 45.455 0.00 0.00 0.00 4.92
1757 1882 3.429410 GGAAGCAGGTTAATGAATGGCAC 60.429 47.826 0.00 0.00 0.00 5.01
1772 1897 3.034721 TGGCACAGACGGTACTTTTAG 57.965 47.619 0.00 0.00 0.00 1.85
1773 1898 2.366266 TGGCACAGACGGTACTTTTAGT 59.634 45.455 0.00 0.00 0.00 2.24
1774 1899 3.181463 TGGCACAGACGGTACTTTTAGTT 60.181 43.478 0.00 0.00 0.00 2.24
1775 1900 3.185797 GGCACAGACGGTACTTTTAGTTG 59.814 47.826 0.00 0.00 0.00 3.16
1776 1901 4.053295 GCACAGACGGTACTTTTAGTTGA 58.947 43.478 0.00 0.00 0.00 3.18
1777 1902 4.084693 GCACAGACGGTACTTTTAGTTGAC 60.085 45.833 0.00 0.00 0.00 3.18
1781 1906 6.202188 ACAGACGGTACTTTTAGTTGACATTG 59.798 38.462 0.00 0.00 0.00 2.82
1784 1909 6.523840 ACGGTACTTTTAGTTGACATTGGTA 58.476 36.000 0.00 0.00 0.00 3.25
1851 1976 4.100035 CACAGAGTCATGATAGCCACCTAA 59.900 45.833 0.00 0.00 0.00 2.69
1869 1994 3.435671 CCTAAGGCTCCTTTTGTAACACG 59.564 47.826 6.47 0.00 37.47 4.49
1882 2007 9.325150 CCTTTTGTAACACGAACATAATACTTG 57.675 33.333 0.00 0.00 0.00 3.16
1903 2029 6.714810 ACTTGTTTGCATAAATGGTCTAGTCA 59.285 34.615 0.00 0.00 0.00 3.41
2017 2143 0.314935 ATTGGCTTGGTGCGTTTCAG 59.685 50.000 0.00 0.00 44.05 3.02
2019 2145 1.282875 GGCTTGGTGCGTTTCAGAC 59.717 57.895 0.00 0.00 44.05 3.51
2066 2192 5.303845 TCTGCTCTGCTTGTCTGATATGTAT 59.696 40.000 0.00 0.00 0.00 2.29
2153 2279 0.250510 TGGTTGACTGTTGCCGCATA 60.251 50.000 0.00 0.00 0.00 3.14
2183 2309 6.044682 GCTCAATTATTTGTCCTTCCCAATG 58.955 40.000 0.00 0.00 34.32 2.82
2187 2313 2.094100 TTTGTCCTTCCCAATGCCAA 57.906 45.000 0.00 0.00 0.00 4.52
2266 2392 6.777526 TGCTTCCAAATAAATTTTTCGGTG 57.222 33.333 0.00 0.00 0.00 4.94
2267 2393 6.516718 TGCTTCCAAATAAATTTTTCGGTGA 58.483 32.000 0.00 0.00 0.00 4.02
2310 2438 1.618861 CTTCCTAGTGAACTGTCGCG 58.381 55.000 0.00 0.00 39.38 5.87
2318 2446 3.953766 AGTGAACTGTCGCGAGTATATG 58.046 45.455 10.24 0.00 39.38 1.78
2332 2460 6.348295 CGCGAGTATATGACTATTGTAGTGGT 60.348 42.308 0.00 0.00 39.06 4.16
2347 2475 2.991250 AGTGGTGCAATCCAGATACAC 58.009 47.619 0.00 5.55 38.23 2.90
2455 2583 4.011058 CGGCTAAAAGACCGGTTAATTG 57.989 45.455 9.42 0.00 45.74 2.32
2728 2856 3.259902 ACTTCGATAAGAGGGCGTTTTC 58.740 45.455 0.00 0.00 36.50 2.29
2832 2960 6.032717 GCACCATAAAATTCTCTGCTCTTTC 58.967 40.000 0.00 0.00 0.00 2.62
2860 2989 7.101652 TGTATGTTGTTTTTGTGGCTAAAGA 57.898 32.000 0.00 0.00 0.00 2.52
2872 3001 7.531857 TTGTGGCTAAAGAAACCATTAATCA 57.468 32.000 0.00 0.00 35.53 2.57
2948 3077 6.930731 AGAAGTTAAAGTTGAACAAGCCAAA 58.069 32.000 5.88 0.00 0.00 3.28
2951 3080 8.871686 AAGTTAAAGTTGAACAAGCCAAATAG 57.128 30.769 5.88 0.00 0.00 1.73
2990 3119 6.275665 TCCAAATAGGGTTGCTAAATGCACA 61.276 40.000 0.00 0.00 44.86 4.57
3084 3213 3.446442 AGGCATCCAAAGTTCATGAGT 57.554 42.857 0.00 0.00 0.00 3.41
3124 3253 5.584551 AGGTATCTCCTTGTTCTTTTGGT 57.415 39.130 0.00 0.00 45.67 3.67
3141 3270 2.372264 TGGTTACTAATCCGCTCGACT 58.628 47.619 0.00 0.00 0.00 4.18
3368 3497 6.700352 CAGGAAATGGTAACCAACATTCAAT 58.300 36.000 0.00 0.00 36.95 2.57
3445 3574 6.624423 ACTTGTTCAATGAATATGGCAGAAC 58.376 36.000 0.00 0.00 35.65 3.01
3605 3777 9.154847 CATCATTTACAGACATCTACTCAACAA 57.845 33.333 0.00 0.00 0.00 2.83
3615 3787 8.873830 AGACATCTACTCAACAATATGTTTTCG 58.126 33.333 0.00 0.00 38.77 3.46
3779 3951 4.872691 AGATGCCAGTATTCTTCTTTCACG 59.127 41.667 0.00 0.00 0.00 4.35
3847 4019 5.913137 AATCAATGCGATGGGAAGTAAAA 57.087 34.783 0.00 0.00 33.40 1.52
3899 4071 6.490721 CACTTAATGGGGTGTACTGGTTTTTA 59.509 38.462 0.00 0.00 0.00 1.52
4069 4241 4.599041 TGATGGTTTTCTGTTCCATAGGG 58.401 43.478 0.00 0.00 41.33 3.53
4174 4346 0.035176 TCCGGGTACGAACTTTTGGG 59.965 55.000 0.00 0.00 44.60 4.12
4280 4452 8.828688 AGTCACTGTACCAATAAAAGAACTAC 57.171 34.615 0.00 0.00 0.00 2.73
4281 4453 8.648693 AGTCACTGTACCAATAAAAGAACTACT 58.351 33.333 0.00 0.00 0.00 2.57
4282 4454 9.269453 GTCACTGTACCAATAAAAGAACTACTT 57.731 33.333 0.00 0.00 40.98 2.24
4504 4686 7.555554 CAGAAGGATTTCAAGACCTGTATCATT 59.444 37.037 0.00 0.00 35.70 2.57
4509 4691 7.122650 GGATTTCAAGACCTGTATCATTTTCCA 59.877 37.037 0.00 0.00 0.00 3.53
4520 4702 6.635755 TGTATCATTTTCCACGTGTCTGATA 58.364 36.000 15.65 14.50 0.00 2.15
4739 4921 6.268847 AGTTACTCTCAACTTCTCAAGTGGAT 59.731 38.462 0.00 0.00 40.57 3.41
4771 4953 1.507562 TGACACACGTACATGCCTTG 58.492 50.000 0.00 0.00 0.00 3.61
4772 4954 1.069358 TGACACACGTACATGCCTTGA 59.931 47.619 0.00 0.00 0.00 3.02
4773 4955 2.289382 TGACACACGTACATGCCTTGAT 60.289 45.455 0.00 0.00 0.00 2.57
4774 4956 2.742053 GACACACGTACATGCCTTGATT 59.258 45.455 0.00 0.00 0.00 2.57
4775 4957 2.483877 ACACACGTACATGCCTTGATTG 59.516 45.455 0.00 0.00 0.00 2.67
4776 4958 2.741517 CACACGTACATGCCTTGATTGA 59.258 45.455 0.00 0.00 0.00 2.57
4777 4959 3.374988 CACACGTACATGCCTTGATTGAT 59.625 43.478 0.00 0.00 0.00 2.57
4778 4960 4.009675 ACACGTACATGCCTTGATTGATT 58.990 39.130 0.00 0.00 0.00 2.57
4779 4961 4.094887 ACACGTACATGCCTTGATTGATTC 59.905 41.667 0.00 0.00 0.00 2.52
4780 4962 4.333649 CACGTACATGCCTTGATTGATTCT 59.666 41.667 0.00 0.00 0.00 2.40
4781 4963 4.943705 ACGTACATGCCTTGATTGATTCTT 59.056 37.500 0.00 0.00 0.00 2.52
4782 4964 6.037062 CACGTACATGCCTTGATTGATTCTTA 59.963 38.462 0.00 0.00 0.00 2.10
4783 4965 6.597672 ACGTACATGCCTTGATTGATTCTTAA 59.402 34.615 0.00 0.00 0.00 1.85
4784 4966 7.128331 CGTACATGCCTTGATTGATTCTTAAG 58.872 38.462 0.00 0.00 0.00 1.85
4785 4967 6.461110 ACATGCCTTGATTGATTCTTAAGG 57.539 37.500 1.85 0.00 40.61 2.69
4786 4968 5.954150 ACATGCCTTGATTGATTCTTAAGGT 59.046 36.000 1.85 0.00 39.97 3.50
4787 4969 6.438425 ACATGCCTTGATTGATTCTTAAGGTT 59.562 34.615 1.85 0.00 39.97 3.50
4788 4970 6.916360 TGCCTTGATTGATTCTTAAGGTTT 57.084 33.333 1.85 0.00 39.97 3.27
4789 4971 8.469200 CATGCCTTGATTGATTCTTAAGGTTTA 58.531 33.333 1.85 0.00 39.97 2.01
4790 4972 8.593945 TGCCTTGATTGATTCTTAAGGTTTAT 57.406 30.769 1.85 0.00 39.97 1.40
4791 4973 9.034800 TGCCTTGATTGATTCTTAAGGTTTATT 57.965 29.630 1.85 0.00 39.97 1.40
4792 4974 9.875691 GCCTTGATTGATTCTTAAGGTTTATTT 57.124 29.630 1.85 0.00 39.97 1.40
4957 5139 5.907197 GATGATCGTTCATCGTGGTTTAT 57.093 39.130 18.10 0.00 46.46 1.40
4967 5149 3.492421 TCGTGGTTTATAGTCGTGGAC 57.508 47.619 0.00 0.00 0.00 4.02
5050 5232 9.373450 AGTGTGATGTAATATCCATAACTCTCT 57.627 33.333 5.05 0.66 26.47 3.10
5139 5321 8.247562 TGGGTCTTAATTTCGATGTTTTATTGG 58.752 33.333 0.00 0.00 0.00 3.16
5140 5322 8.463607 GGGTCTTAATTTCGATGTTTTATTGGA 58.536 33.333 0.00 0.00 0.00 3.53
5192 5385 6.954684 ACTCTGGAGACTTAATTCTACTGGAA 59.045 38.462 10.73 0.00 38.41 3.53
5236 5429 3.719268 TTGATGAGTGGCCTTGTACAT 57.281 42.857 3.32 2.70 0.00 2.29
5239 5432 2.949177 TGAGTGGCCTTGTACATTGT 57.051 45.000 3.32 0.00 0.00 2.71
5240 5433 2.503331 TGAGTGGCCTTGTACATTGTG 58.497 47.619 3.32 0.00 0.00 3.33
5241 5434 2.158682 TGAGTGGCCTTGTACATTGTGT 60.159 45.455 3.32 0.00 0.00 3.72
5268 5461 2.302587 TCTGTGGGGAAAATGGGAAC 57.697 50.000 0.00 0.00 0.00 3.62
5354 5550 3.556817 CAACCATGCAGCTAGTCCA 57.443 52.632 0.00 0.00 0.00 4.02
5373 5569 4.982916 GTCCATACGACTGTAATTAGCCAG 59.017 45.833 0.00 2.39 38.57 4.85
5379 5575 4.870426 ACGACTGTAATTAGCCAGTTGATG 59.130 41.667 21.74 11.02 43.05 3.07
5436 5633 1.321474 AACCACACACAGAATGGCAG 58.679 50.000 0.00 0.00 43.62 4.85
5546 5745 1.248486 TCTCCTTCAGACGTGTCCTG 58.752 55.000 0.00 0.00 0.00 3.86
5568 5767 0.394938 TAGTTTCAGCGTTGCTCCCA 59.605 50.000 0.00 0.00 36.40 4.37
5616 5819 4.202243 CCAGAAGAAACCTGCATGGAAAAA 60.202 41.667 8.91 0.00 39.71 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.381872 GGGGCAGCAGACTCCTCTA 60.382 63.158 0.00 0.00 0.00 2.43
1 2 2.686835 GGGGCAGCAGACTCCTCT 60.687 66.667 0.00 0.00 0.00 3.69
2 3 2.533974 CTTGGGGCAGCAGACTCCTC 62.534 65.000 0.00 0.00 0.00 3.71
3 4 2.530151 TTGGGGCAGCAGACTCCT 60.530 61.111 0.00 0.00 0.00 3.69
4 5 2.045536 CTTGGGGCAGCAGACTCC 60.046 66.667 0.00 0.00 0.00 3.85
5 6 1.376553 GTCTTGGGGCAGCAGACTC 60.377 63.158 3.81 0.00 35.10 3.36
6 7 1.495579 ATGTCTTGGGGCAGCAGACT 61.496 55.000 10.95 0.00 38.24 3.24
7 8 1.001641 ATGTCTTGGGGCAGCAGAC 60.002 57.895 4.05 4.05 37.95 3.51
8 9 1.001764 CATGTCTTGGGGCAGCAGA 60.002 57.895 0.00 0.00 0.00 4.26
9 10 2.050350 CCATGTCTTGGGGCAGCAG 61.050 63.158 0.00 0.00 42.33 4.24
10 11 2.036098 CCATGTCTTGGGGCAGCA 59.964 61.111 0.00 0.00 42.33 4.41
17 18 2.442236 ATAAGCACCCCATGTCTTGG 57.558 50.000 0.00 0.00 46.00 3.61
18 19 3.355378 TGAATAAGCACCCCATGTCTTG 58.645 45.455 0.00 0.00 0.00 3.02
19 20 3.624777 CTGAATAAGCACCCCATGTCTT 58.375 45.455 0.00 0.00 0.00 3.01
20 21 2.092212 CCTGAATAAGCACCCCATGTCT 60.092 50.000 0.00 0.00 0.00 3.41
21 22 2.301346 CCTGAATAAGCACCCCATGTC 58.699 52.381 0.00 0.00 0.00 3.06
22 23 1.686115 GCCTGAATAAGCACCCCATGT 60.686 52.381 0.00 0.00 0.00 3.21
23 24 1.035139 GCCTGAATAAGCACCCCATG 58.965 55.000 0.00 0.00 0.00 3.66
24 25 0.466189 CGCCTGAATAAGCACCCCAT 60.466 55.000 0.00 0.00 0.00 4.00
25 26 1.077787 CGCCTGAATAAGCACCCCA 60.078 57.895 0.00 0.00 0.00 4.96
26 27 2.481471 GCGCCTGAATAAGCACCCC 61.481 63.158 0.00 0.00 0.00 4.95
27 28 0.179056 TAGCGCCTGAATAAGCACCC 60.179 55.000 2.29 0.00 0.00 4.61
28 29 1.330829 GTTAGCGCCTGAATAAGCACC 59.669 52.381 2.29 0.00 0.00 5.01
29 30 1.330829 GGTTAGCGCCTGAATAAGCAC 59.669 52.381 2.29 0.00 0.00 4.40
30 31 1.663695 GGTTAGCGCCTGAATAAGCA 58.336 50.000 2.29 0.00 0.00 3.91
33 34 2.676632 TTCGGTTAGCGCCTGAATAA 57.323 45.000 2.29 0.00 0.00 1.40
114 115 0.892755 TAGTCGTTTGGCGTCTGGAT 59.107 50.000 0.00 0.00 39.17 3.41
115 116 0.242825 CTAGTCGTTTGGCGTCTGGA 59.757 55.000 0.00 0.00 38.88 3.86
116 117 1.352156 GCTAGTCGTTTGGCGTCTGG 61.352 60.000 0.00 0.00 39.17 3.86
117 118 0.388649 AGCTAGTCGTTTGGCGTCTG 60.389 55.000 0.00 0.00 39.17 3.51
122 123 1.508632 TGTCAAGCTAGTCGTTTGGC 58.491 50.000 0.00 0.00 38.70 4.52
123 124 3.325870 TGATGTCAAGCTAGTCGTTTGG 58.674 45.455 0.00 0.00 34.91 3.28
124 125 4.990543 TTGATGTCAAGCTAGTCGTTTG 57.009 40.909 0.00 0.00 35.41 2.93
125 126 5.581085 GGTATTGATGTCAAGCTAGTCGTTT 59.419 40.000 1.65 0.00 39.47 3.60
126 127 5.109903 GGTATTGATGTCAAGCTAGTCGTT 58.890 41.667 1.65 0.00 39.47 3.85
127 128 4.159693 TGGTATTGATGTCAAGCTAGTCGT 59.840 41.667 1.65 0.00 39.47 4.34
129 130 4.509600 GCTGGTATTGATGTCAAGCTAGTC 59.490 45.833 1.65 0.00 39.47 2.59
130 131 4.446371 GCTGGTATTGATGTCAAGCTAGT 58.554 43.478 1.65 0.00 39.47 2.57
131 132 3.812053 GGCTGGTATTGATGTCAAGCTAG 59.188 47.826 1.65 5.63 39.47 3.42
132 133 3.199727 TGGCTGGTATTGATGTCAAGCTA 59.800 43.478 1.65 0.00 39.47 3.32
133 134 2.025981 TGGCTGGTATTGATGTCAAGCT 60.026 45.455 1.65 0.00 39.47 3.74
134 135 2.368439 TGGCTGGTATTGATGTCAAGC 58.632 47.619 1.65 0.00 39.47 4.01
135 136 5.389859 TTTTGGCTGGTATTGATGTCAAG 57.610 39.130 1.65 0.00 39.47 3.02
136 137 5.069648 TGTTTTTGGCTGGTATTGATGTCAA 59.930 36.000 0.00 0.00 40.51 3.18
137 138 4.586421 TGTTTTTGGCTGGTATTGATGTCA 59.414 37.500 0.00 0.00 0.00 3.58
138 139 4.923281 GTGTTTTTGGCTGGTATTGATGTC 59.077 41.667 0.00 0.00 0.00 3.06
139 140 4.343526 TGTGTTTTTGGCTGGTATTGATGT 59.656 37.500 0.00 0.00 0.00 3.06
140 141 4.880759 TGTGTTTTTGGCTGGTATTGATG 58.119 39.130 0.00 0.00 0.00 3.07
141 142 4.021192 CCTGTGTTTTTGGCTGGTATTGAT 60.021 41.667 0.00 0.00 0.00 2.57
147 148 2.086610 ATCCTGTGTTTTTGGCTGGT 57.913 45.000 0.00 0.00 0.00 4.00
158 159 0.991920 AATCCCGTCCAATCCTGTGT 59.008 50.000 0.00 0.00 0.00 3.72
160 161 2.193127 TGTAATCCCGTCCAATCCTGT 58.807 47.619 0.00 0.00 0.00 4.00
161 162 3.492102 ATGTAATCCCGTCCAATCCTG 57.508 47.619 0.00 0.00 0.00 3.86
162 163 3.458118 TCAATGTAATCCCGTCCAATCCT 59.542 43.478 0.00 0.00 0.00 3.24
169 170 2.223180 GCCGTTTCAATGTAATCCCGTC 60.223 50.000 0.00 0.00 0.00 4.79
170 171 1.741145 GCCGTTTCAATGTAATCCCGT 59.259 47.619 0.00 0.00 0.00 5.28
172 173 2.096248 TGGCCGTTTCAATGTAATCCC 58.904 47.619 0.00 0.00 0.00 3.85
182 183 1.885887 CTTTGATTCCTGGCCGTTTCA 59.114 47.619 0.00 0.00 0.00 2.69
183 184 1.402852 GCTTTGATTCCTGGCCGTTTC 60.403 52.381 0.00 0.00 0.00 2.78
224 225 0.247460 GGGGTATATACGGGGCGAAC 59.753 60.000 6.79 0.00 0.00 3.95
225 226 0.178938 TGGGGTATATACGGGGCGAA 60.179 55.000 6.79 0.00 0.00 4.70
226 227 0.178938 TTGGGGTATATACGGGGCGA 60.179 55.000 6.79 0.00 0.00 5.54
267 283 4.786575 GCTAACGAAATACTTTTTGGAGCG 59.213 41.667 0.00 0.00 33.36 5.03
285 301 2.215196 TCCACAAGTTGGTTCGCTAAC 58.785 47.619 7.96 0.00 46.97 2.34
286 302 2.489971 CTCCACAAGTTGGTTCGCTAA 58.510 47.619 7.96 0.00 46.97 3.09
288 304 0.535102 CCTCCACAAGTTGGTTCGCT 60.535 55.000 7.96 0.00 46.97 4.93
289 305 1.949257 CCTCCACAAGTTGGTTCGC 59.051 57.895 7.96 0.00 46.97 4.70
290 306 0.535102 AGCCTCCACAAGTTGGTTCG 60.535 55.000 7.96 0.00 46.97 3.95
291 307 0.954452 CAGCCTCCACAAGTTGGTTC 59.046 55.000 7.96 0.00 46.97 3.62
292 308 1.109323 GCAGCCTCCACAAGTTGGTT 61.109 55.000 7.96 0.00 46.97 3.67
293 309 1.529244 GCAGCCTCCACAAGTTGGT 60.529 57.895 7.96 0.00 46.97 3.67
295 311 0.746063 TTTGCAGCCTCCACAAGTTG 59.254 50.000 0.00 0.00 0.00 3.16
298 314 0.389426 GCATTTGCAGCCTCCACAAG 60.389 55.000 0.00 0.00 41.59 3.16
299 315 1.667151 GCATTTGCAGCCTCCACAA 59.333 52.632 0.00 0.00 41.59 3.33
300 316 3.368822 GCATTTGCAGCCTCCACA 58.631 55.556 0.00 0.00 41.59 4.17
307 323 2.048877 AGCGTTGGCATTTGCAGC 60.049 55.556 4.74 4.45 44.36 5.25
308 324 1.444895 GGAGCGTTGGCATTTGCAG 60.445 57.895 4.74 0.00 44.36 4.41
309 325 1.742324 TTGGAGCGTTGGCATTTGCA 61.742 50.000 4.74 0.00 44.36 4.08
310 326 0.599728 TTTGGAGCGTTGGCATTTGC 60.600 50.000 0.00 0.00 43.41 3.68
311 327 1.863267 TTTTGGAGCGTTGGCATTTG 58.137 45.000 0.00 0.00 43.41 2.32
312 328 2.158971 ACTTTTTGGAGCGTTGGCATTT 60.159 40.909 0.00 0.00 43.41 2.32
313 329 1.412343 ACTTTTTGGAGCGTTGGCATT 59.588 42.857 0.00 0.00 43.41 3.56
314 330 1.039856 ACTTTTTGGAGCGTTGGCAT 58.960 45.000 0.00 0.00 43.41 4.40
315 331 1.681538 TACTTTTTGGAGCGTTGGCA 58.318 45.000 0.00 0.00 43.41 4.92
316 332 3.297830 AATACTTTTTGGAGCGTTGGC 57.702 42.857 0.00 0.00 40.37 4.52
317 333 3.428534 GCAAATACTTTTTGGAGCGTTGG 59.571 43.478 0.79 0.00 0.00 3.77
318 334 4.047822 TGCAAATACTTTTTGGAGCGTTG 58.952 39.130 0.00 0.00 0.00 4.10
319 335 4.314740 TGCAAATACTTTTTGGAGCGTT 57.685 36.364 0.00 0.00 0.00 4.84
320 336 4.519540 ATGCAAATACTTTTTGGAGCGT 57.480 36.364 0.00 0.00 33.41 5.07
321 337 7.524294 AATAATGCAAATACTTTTTGGAGCG 57.476 32.000 0.00 0.00 33.41 5.03
322 338 9.154847 AGAAATAATGCAAATACTTTTTGGAGC 57.845 29.630 0.00 0.00 33.41 4.70
345 361 9.787532 CGCTGAAATCCTGAAATAAATTTAGAA 57.212 29.630 3.94 0.00 0.00 2.10
346 362 9.173021 TCGCTGAAATCCTGAAATAAATTTAGA 57.827 29.630 3.94 0.00 0.00 2.10
347 363 9.956720 ATCGCTGAAATCCTGAAATAAATTTAG 57.043 29.630 3.94 0.00 0.00 1.85
348 364 9.734620 CATCGCTGAAATCCTGAAATAAATTTA 57.265 29.630 0.00 0.00 0.00 1.40
349 365 7.223387 GCATCGCTGAAATCCTGAAATAAATTT 59.777 33.333 0.00 0.00 0.00 1.82
350 366 6.698766 GCATCGCTGAAATCCTGAAATAAATT 59.301 34.615 0.00 0.00 0.00 1.82
351 367 6.211515 GCATCGCTGAAATCCTGAAATAAAT 58.788 36.000 0.00 0.00 0.00 1.40
352 368 5.581605 GCATCGCTGAAATCCTGAAATAAA 58.418 37.500 0.00 0.00 0.00 1.40
353 369 4.260743 CGCATCGCTGAAATCCTGAAATAA 60.261 41.667 0.00 0.00 0.00 1.40
354 370 3.248363 CGCATCGCTGAAATCCTGAAATA 59.752 43.478 0.00 0.00 0.00 1.40
355 371 2.032550 CGCATCGCTGAAATCCTGAAAT 59.967 45.455 0.00 0.00 0.00 2.17
356 372 1.398041 CGCATCGCTGAAATCCTGAAA 59.602 47.619 0.00 0.00 0.00 2.69
357 373 1.009078 CGCATCGCTGAAATCCTGAA 58.991 50.000 0.00 0.00 0.00 3.02
358 374 0.108186 ACGCATCGCTGAAATCCTGA 60.108 50.000 0.00 0.00 0.00 3.86
359 375 0.729116 AACGCATCGCTGAAATCCTG 59.271 50.000 0.00 0.00 0.00 3.86
360 376 1.453155 AAACGCATCGCTGAAATCCT 58.547 45.000 0.00 0.00 0.00 3.24
361 377 2.177173 GAAAACGCATCGCTGAAATCC 58.823 47.619 0.00 0.00 0.00 3.01
362 378 2.850321 TGAAAACGCATCGCTGAAATC 58.150 42.857 0.00 0.00 0.00 2.17
363 379 2.987413 TGAAAACGCATCGCTGAAAT 57.013 40.000 0.00 0.00 0.00 2.17
364 380 2.987413 ATGAAAACGCATCGCTGAAA 57.013 40.000 0.00 0.00 0.00 2.69
365 381 2.987413 AATGAAAACGCATCGCTGAA 57.013 40.000 0.00 0.00 0.00 3.02
366 382 2.351418 CCTAATGAAAACGCATCGCTGA 59.649 45.455 0.00 0.00 0.00 4.26
367 383 2.351418 TCCTAATGAAAACGCATCGCTG 59.649 45.455 0.00 0.00 0.00 5.18
368 384 2.609459 CTCCTAATGAAAACGCATCGCT 59.391 45.455 0.00 0.00 0.00 4.93
369 385 2.286418 CCTCCTAATGAAAACGCATCGC 60.286 50.000 0.00 0.00 0.00 4.58
370 386 3.194861 TCCTCCTAATGAAAACGCATCG 58.805 45.455 0.00 0.00 0.00 3.84
371 387 4.271291 GTCTCCTCCTAATGAAAACGCATC 59.729 45.833 0.00 0.00 0.00 3.91
372 388 4.192317 GTCTCCTCCTAATGAAAACGCAT 58.808 43.478 0.00 0.00 0.00 4.73
373 389 3.596214 GTCTCCTCCTAATGAAAACGCA 58.404 45.455 0.00 0.00 0.00 5.24
374 390 2.603560 CGTCTCCTCCTAATGAAAACGC 59.396 50.000 0.00 0.00 0.00 4.84
375 391 3.846360 ACGTCTCCTCCTAATGAAAACG 58.154 45.455 0.00 0.00 0.00 3.60
376 392 6.555812 AAAACGTCTCCTCCTAATGAAAAC 57.444 37.500 0.00 0.00 0.00 2.43
377 393 5.407387 CGAAAACGTCTCCTCCTAATGAAAA 59.593 40.000 0.00 0.00 0.00 2.29
378 394 4.927425 CGAAAACGTCTCCTCCTAATGAAA 59.073 41.667 0.00 0.00 0.00 2.69
379 395 4.021719 ACGAAAACGTCTCCTCCTAATGAA 60.022 41.667 0.00 0.00 0.00 2.57
380 396 3.508793 ACGAAAACGTCTCCTCCTAATGA 59.491 43.478 0.00 0.00 0.00 2.57
381 397 3.846360 ACGAAAACGTCTCCTCCTAATG 58.154 45.455 0.00 0.00 0.00 1.90
382 398 3.427233 CGACGAAAACGTCTCCTCCTAAT 60.427 47.826 17.92 0.00 36.81 1.73
383 399 2.095567 CGACGAAAACGTCTCCTCCTAA 60.096 50.000 17.92 0.00 36.81 2.69
384 400 1.466167 CGACGAAAACGTCTCCTCCTA 59.534 52.381 17.92 0.00 36.81 2.94
385 401 0.240411 CGACGAAAACGTCTCCTCCT 59.760 55.000 17.92 0.00 36.81 3.69
386 402 0.239347 TCGACGAAAACGTCTCCTCC 59.761 55.000 17.92 0.00 36.81 4.30
387 403 1.325647 GTCGACGAAAACGTCTCCTC 58.674 55.000 17.92 5.01 36.81 3.71
388 404 0.385223 CGTCGACGAAAACGTCTCCT 60.385 55.000 33.35 0.00 43.02 3.69
389 405 0.384725 TCGTCGACGAAAACGTCTCC 60.385 55.000 36.25 8.99 46.30 3.71
390 406 3.062786 TCGTCGACGAAAACGTCTC 57.937 52.632 36.25 11.12 46.30 3.36
403 419 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
404 420 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
417 433 6.364165 TCTTGAAATTTACGAAGTCACCGTAG 59.636 38.462 0.00 0.00 43.93 3.51
418 434 6.215121 TCTTGAAATTTACGAAGTCACCGTA 58.785 36.000 0.00 0.00 43.93 4.02
419 435 5.051816 TCTTGAAATTTACGAAGTCACCGT 58.948 37.500 0.00 0.00 43.93 4.83
420 436 5.585500 TCTTGAAATTTACGAAGTCACCG 57.415 39.130 0.00 0.00 43.93 4.94
421 437 7.015877 GTCATCTTGAAATTTACGAAGTCACC 58.984 38.462 0.00 0.00 43.93 4.02
422 438 7.572759 TGTCATCTTGAAATTTACGAAGTCAC 58.427 34.615 0.00 0.00 43.93 3.67
423 439 7.722795 TGTCATCTTGAAATTTACGAAGTCA 57.277 32.000 0.00 0.00 43.93 3.41
424 440 7.217070 GCATGTCATCTTGAAATTTACGAAGTC 59.783 37.037 0.00 0.00 43.93 3.01
426 442 6.470235 GGCATGTCATCTTGAAATTTACGAAG 59.530 38.462 0.00 0.00 0.00 3.79
427 443 6.321717 GGCATGTCATCTTGAAATTTACGAA 58.678 36.000 0.00 0.00 0.00 3.85
428 444 5.447144 CGGCATGTCATCTTGAAATTTACGA 60.447 40.000 0.00 0.00 0.00 3.43
429 445 4.730042 CGGCATGTCATCTTGAAATTTACG 59.270 41.667 0.00 0.00 0.00 3.18
430 446 5.036737 CCGGCATGTCATCTTGAAATTTAC 58.963 41.667 0.00 0.00 0.00 2.01
431 447 4.439974 GCCGGCATGTCATCTTGAAATTTA 60.440 41.667 24.80 0.00 0.00 1.40
432 448 3.676873 GCCGGCATGTCATCTTGAAATTT 60.677 43.478 24.80 0.00 0.00 1.82
433 449 2.159198 GCCGGCATGTCATCTTGAAATT 60.159 45.455 24.80 0.00 0.00 1.82
434 450 1.406539 GCCGGCATGTCATCTTGAAAT 59.593 47.619 24.80 0.00 0.00 2.17
435 451 0.810648 GCCGGCATGTCATCTTGAAA 59.189 50.000 24.80 0.00 0.00 2.69
436 452 0.035152 AGCCGGCATGTCATCTTGAA 60.035 50.000 31.54 0.00 0.00 2.69
437 453 0.462581 GAGCCGGCATGTCATCTTGA 60.463 55.000 31.54 0.00 0.00 3.02
438 454 0.745486 TGAGCCGGCATGTCATCTTG 60.745 55.000 31.54 0.00 0.00 3.02
439 455 0.463295 CTGAGCCGGCATGTCATCTT 60.463 55.000 31.54 3.33 0.00 2.40
440 456 1.145598 CTGAGCCGGCATGTCATCT 59.854 57.895 31.54 4.27 0.00 2.90
441 457 1.153289 ACTGAGCCGGCATGTCATC 60.153 57.895 31.54 16.99 0.00 2.92
442 458 1.153289 GACTGAGCCGGCATGTCAT 60.153 57.895 31.54 13.17 0.00 3.06
443 459 2.230994 GAGACTGAGCCGGCATGTCA 62.231 60.000 32.41 25.37 0.00 3.58
444 460 1.520342 GAGACTGAGCCGGCATGTC 60.520 63.158 31.54 29.08 0.00 3.06
445 461 1.954362 GAGAGACTGAGCCGGCATGT 61.954 60.000 31.54 23.16 0.00 3.21
446 462 1.227205 GAGAGACTGAGCCGGCATG 60.227 63.158 31.54 19.90 0.00 4.06
447 463 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
448 464 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
449 465 4.200283 CCGAGAGACTGAGCCGGC 62.200 72.222 21.89 21.89 33.47 6.13
450 466 2.438614 TCCGAGAGACTGAGCCGG 60.439 66.667 0.00 0.00 41.36 6.13
451 467 2.477176 CCTCCGAGAGACTGAGCCG 61.477 68.421 0.00 0.00 0.00 5.52
452 468 1.379309 ACCTCCGAGAGACTGAGCC 60.379 63.158 0.00 0.00 0.00 4.70
453 469 1.806568 CACCTCCGAGAGACTGAGC 59.193 63.158 0.00 0.00 0.00 4.26
454 470 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
455 471 0.678366 GAGCACCTCCGAGAGACTGA 60.678 60.000 0.00 0.00 0.00 3.41
456 472 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
457 473 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.000 0.00 0.00 0.00 3.24
458 474 1.606668 CTATGAGCACCTCCGAGAGAC 59.393 57.143 0.00 0.00 0.00 3.36
459 475 1.490910 TCTATGAGCACCTCCGAGAGA 59.509 52.381 0.00 0.00 0.00 3.10
460 476 1.879380 CTCTATGAGCACCTCCGAGAG 59.121 57.143 0.00 6.27 34.42 3.20
461 477 1.477740 CCTCTATGAGCACCTCCGAGA 60.478 57.143 0.00 0.00 0.00 4.04
462 478 0.958091 CCTCTATGAGCACCTCCGAG 59.042 60.000 0.00 0.00 0.00 4.63
463 479 0.259065 ACCTCTATGAGCACCTCCGA 59.741 55.000 0.00 0.00 0.00 4.55
464 480 1.883275 CTACCTCTATGAGCACCTCCG 59.117 57.143 0.00 0.00 0.00 4.63
465 481 2.158445 TCCTACCTCTATGAGCACCTCC 60.158 54.545 0.00 0.00 0.00 4.30
466 482 3.231207 TCCTACCTCTATGAGCACCTC 57.769 52.381 0.00 0.00 0.00 3.85
467 483 3.116939 ACATCCTACCTCTATGAGCACCT 60.117 47.826 0.00 0.00 0.00 4.00
468 484 3.006323 CACATCCTACCTCTATGAGCACC 59.994 52.174 0.00 0.00 0.00 5.01
469 485 3.553922 GCACATCCTACCTCTATGAGCAC 60.554 52.174 0.00 0.00 37.23 4.40
470 486 2.630098 GCACATCCTACCTCTATGAGCA 59.370 50.000 0.00 0.00 37.23 4.26
471 487 2.352225 CGCACATCCTACCTCTATGAGC 60.352 54.545 0.00 0.00 34.95 4.26
472 488 2.887783 ACGCACATCCTACCTCTATGAG 59.112 50.000 0.00 0.00 0.00 2.90
473 489 2.623416 CACGCACATCCTACCTCTATGA 59.377 50.000 0.00 0.00 0.00 2.15
474 490 2.362397 ACACGCACATCCTACCTCTATG 59.638 50.000 0.00 0.00 0.00 2.23
475 491 2.362397 CACACGCACATCCTACCTCTAT 59.638 50.000 0.00 0.00 0.00 1.98
476 492 1.749063 CACACGCACATCCTACCTCTA 59.251 52.381 0.00 0.00 0.00 2.43
477 493 0.532573 CACACGCACATCCTACCTCT 59.467 55.000 0.00 0.00 0.00 3.69
478 494 0.246635 ACACACGCACATCCTACCTC 59.753 55.000 0.00 0.00 0.00 3.85
479 495 0.037326 CACACACGCACATCCTACCT 60.037 55.000 0.00 0.00 0.00 3.08
480 496 1.635663 GCACACACGCACATCCTACC 61.636 60.000 0.00 0.00 0.00 3.18
481 497 1.787847 GCACACACGCACATCCTAC 59.212 57.895 0.00 0.00 0.00 3.18
482 498 1.736282 CGCACACACGCACATCCTA 60.736 57.895 0.00 0.00 0.00 2.94
483 499 3.043713 CGCACACACGCACATCCT 61.044 61.111 0.00 0.00 0.00 3.24
484 500 3.295228 GACGCACACACGCACATCC 62.295 63.158 0.00 0.00 36.19 3.51
485 501 1.900585 ATGACGCACACACGCACATC 61.901 55.000 0.00 0.00 36.19 3.06
486 502 0.669012 TATGACGCACACACGCACAT 60.669 50.000 0.00 0.00 37.25 3.21
487 503 1.281566 CTATGACGCACACACGCACA 61.282 55.000 0.00 0.00 36.19 4.57
488 504 1.416049 CTATGACGCACACACGCAC 59.584 57.895 0.00 0.00 36.19 5.34
489 505 1.736282 CCTATGACGCACACACGCA 60.736 57.895 0.00 0.00 36.19 5.24
490 506 1.011968 TTCCTATGACGCACACACGC 61.012 55.000 0.00 0.00 36.19 5.34
491 507 1.324435 CATTCCTATGACGCACACACG 59.676 52.381 0.00 0.00 39.50 4.49
492 508 2.604914 CTCATTCCTATGACGCACACAC 59.395 50.000 0.00 0.00 35.87 3.82
493 509 2.233676 ACTCATTCCTATGACGCACACA 59.766 45.455 0.00 0.00 35.87 3.72
494 510 2.604914 CACTCATTCCTATGACGCACAC 59.395 50.000 0.00 0.00 35.87 3.82
495 511 2.233676 ACACTCATTCCTATGACGCACA 59.766 45.455 0.00 0.00 35.87 4.57
496 512 2.893637 ACACTCATTCCTATGACGCAC 58.106 47.619 0.00 0.00 35.87 5.34
497 513 4.620982 CATACACTCATTCCTATGACGCA 58.379 43.478 0.00 0.00 35.87 5.24
498 514 3.430218 GCATACACTCATTCCTATGACGC 59.570 47.826 0.00 0.00 35.87 5.19
499 515 3.670523 CGCATACACTCATTCCTATGACG 59.329 47.826 0.00 0.00 35.87 4.35
500 516 3.430218 GCGCATACACTCATTCCTATGAC 59.570 47.826 0.30 0.00 35.87 3.06
501 517 3.653344 GCGCATACACTCATTCCTATGA 58.347 45.455 0.30 0.00 38.45 2.15
502 518 2.409715 CGCGCATACACTCATTCCTATG 59.590 50.000 8.75 0.00 0.00 2.23
503 519 2.035961 ACGCGCATACACTCATTCCTAT 59.964 45.455 5.73 0.00 0.00 2.57
504 520 1.407618 ACGCGCATACACTCATTCCTA 59.592 47.619 5.73 0.00 0.00 2.94
505 521 0.175760 ACGCGCATACACTCATTCCT 59.824 50.000 5.73 0.00 0.00 3.36
506 522 0.577269 GACGCGCATACACTCATTCC 59.423 55.000 5.73 0.00 0.00 3.01
507 523 1.256376 CAGACGCGCATACACTCATTC 59.744 52.381 5.73 0.00 0.00 2.67
508 524 1.280982 CAGACGCGCATACACTCATT 58.719 50.000 5.73 0.00 0.00 2.57
509 525 0.173481 ACAGACGCGCATACACTCAT 59.827 50.000 5.73 0.00 0.00 2.90
510 526 0.806241 TACAGACGCGCATACACTCA 59.194 50.000 5.73 0.00 0.00 3.41
511 527 1.781429 CATACAGACGCGCATACACTC 59.219 52.381 5.73 0.00 0.00 3.51
512 528 1.404035 TCATACAGACGCGCATACACT 59.596 47.619 5.73 0.00 0.00 3.55
513 529 1.781429 CTCATACAGACGCGCATACAC 59.219 52.381 5.73 0.00 0.00 2.90
514 530 1.864029 GCTCATACAGACGCGCATACA 60.864 52.381 5.73 0.00 0.00 2.29
515 531 0.778815 GCTCATACAGACGCGCATAC 59.221 55.000 5.73 0.00 0.00 2.39
516 532 0.660300 CGCTCATACAGACGCGCATA 60.660 55.000 5.73 0.00 37.19 3.14
517 533 1.946156 CGCTCATACAGACGCGCAT 60.946 57.895 5.73 0.00 37.19 4.73
518 534 2.579518 CGCTCATACAGACGCGCA 60.580 61.111 5.73 0.00 37.19 6.09
519 535 1.683790 AAACGCTCATACAGACGCGC 61.684 55.000 5.73 0.00 43.15 6.86
520 536 0.023732 CAAACGCTCATACAGACGCG 59.976 55.000 3.53 3.53 44.15 6.01
521 537 0.247301 GCAAACGCTCATACAGACGC 60.247 55.000 0.00 0.00 0.00 5.19
522 538 0.023732 CGCAAACGCTCATACAGACG 59.976 55.000 0.00 0.00 0.00 4.18
523 539 1.059264 GACGCAAACGCTCATACAGAC 59.941 52.381 0.00 0.00 45.53 3.51
524 540 1.067846 AGACGCAAACGCTCATACAGA 60.068 47.619 0.00 0.00 45.53 3.41
525 541 1.059692 CAGACGCAAACGCTCATACAG 59.940 52.381 0.00 0.00 45.53 2.74
526 542 1.067693 CAGACGCAAACGCTCATACA 58.932 50.000 0.00 0.00 45.53 2.29
527 543 1.068474 ACAGACGCAAACGCTCATAC 58.932 50.000 0.00 0.00 45.53 2.39
528 544 2.640346 TACAGACGCAAACGCTCATA 57.360 45.000 0.00 0.00 45.53 2.15
529 545 1.927174 GATACAGACGCAAACGCTCAT 59.073 47.619 0.00 0.00 45.53 2.90
530 546 1.346365 GATACAGACGCAAACGCTCA 58.654 50.000 0.00 0.00 45.53 4.26
531 547 0.294887 CGATACAGACGCAAACGCTC 59.705 55.000 0.00 0.00 45.53 5.03
532 548 0.109458 TCGATACAGACGCAAACGCT 60.109 50.000 0.00 0.00 45.53 5.07
533 549 0.921347 ATCGATACAGACGCAAACGC 59.079 50.000 0.00 0.00 45.53 4.84
535 551 3.991605 AACATCGATACAGACGCAAAC 57.008 42.857 0.00 0.00 0.00 2.93
536 552 6.469139 TTTTAACATCGATACAGACGCAAA 57.531 33.333 0.00 0.00 0.00 3.68
537 553 6.469139 TTTTTAACATCGATACAGACGCAA 57.531 33.333 0.00 0.00 0.00 4.85
614 630 1.221021 GGATCCACCGTCCAGAACC 59.779 63.158 6.95 0.00 35.76 3.62
658 674 1.971167 TTGGCGGTTCCATGCAGAC 60.971 57.895 0.00 0.00 46.04 3.51
662 678 3.758931 GGGTTGGCGGTTCCATGC 61.759 66.667 0.00 0.00 46.04 4.06
703 729 3.503363 GACGACCGACCGACCGAT 61.503 66.667 9.46 0.00 0.00 4.18
812 838 0.464452 CTTACACTTAGGCCCTCGGG 59.536 60.000 0.00 0.00 38.57 5.14
828 854 0.169672 CCTCGTCGTCGGCTTTCTTA 59.830 55.000 1.55 0.00 37.69 2.10
920 982 1.268625 GCGGAGAAACGGGTCAAATTT 59.731 47.619 0.00 0.00 0.00 1.82
1100 1163 3.332919 GAGCAGATCAAGCAGAGACAAA 58.667 45.455 11.97 0.00 0.00 2.83
1165 1241 3.195002 CGTGCATGCGTCCCGAAT 61.195 61.111 14.09 0.00 0.00 3.34
1199 1279 2.032834 ATTTACCACCGCACGCCA 59.967 55.556 0.00 0.00 0.00 5.69
1223 1313 2.090524 CGCAGTAACCGACGGGAAC 61.091 63.158 20.00 15.28 36.97 3.62
1225 1315 3.751246 CCGCAGTAACCGACGGGA 61.751 66.667 20.00 2.24 41.95 5.14
1286 1376 2.150397 ACTCCATACGCTAAATCCGC 57.850 50.000 0.00 0.00 0.00 5.54
1301 1391 2.748605 CAGCGAGATCACCAATACTCC 58.251 52.381 0.00 0.00 0.00 3.85
1307 1397 0.179137 CGTAGCAGCGAGATCACCAA 60.179 55.000 0.00 0.00 0.00 3.67
1319 1409 2.115911 ACCTCCTCGCTCGTAGCAG 61.116 63.158 7.47 4.41 42.58 4.24
1349 1444 4.056050 GGCCGAACGATTATGAACTACAT 58.944 43.478 0.00 0.00 42.39 2.29
1355 1450 1.208535 AGGTGGCCGAACGATTATGAA 59.791 47.619 0.00 0.00 0.00 2.57
1425 1520 0.248296 GTTCCAAAGCGCAAACACGA 60.248 50.000 11.47 0.00 34.06 4.35
1426 1521 0.248458 AGTTCCAAAGCGCAAACACG 60.248 50.000 11.47 0.00 0.00 4.49
1427 1522 1.199624 CAGTTCCAAAGCGCAAACAC 58.800 50.000 11.47 0.00 0.00 3.32
1429 1524 1.477105 GTCAGTTCCAAAGCGCAAAC 58.523 50.000 11.47 5.86 0.00 2.93
1430 1525 0.028770 CGTCAGTTCCAAAGCGCAAA 59.971 50.000 11.47 0.00 0.00 3.68
1434 1532 0.238289 AATGCGTCAGTTCCAAAGCG 59.762 50.000 0.00 0.00 0.00 4.68
1449 1547 1.787012 CACAACTCCAGCCAAAATGC 58.213 50.000 0.00 0.00 0.00 3.56
1450 1548 1.787012 GCACAACTCCAGCCAAAATG 58.213 50.000 0.00 0.00 0.00 2.32
1490 1602 5.622770 ACGAAATTAGGTGTTGAATGTCC 57.377 39.130 0.00 0.00 0.00 4.02
1492 1604 5.237779 ACGAACGAAATTAGGTGTTGAATGT 59.762 36.000 0.14 0.00 0.00 2.71
1493 1605 5.685841 ACGAACGAAATTAGGTGTTGAATG 58.314 37.500 0.14 0.00 0.00 2.67
1494 1606 5.467399 TGACGAACGAAATTAGGTGTTGAAT 59.533 36.000 0.14 0.00 0.00 2.57
1495 1607 4.809958 TGACGAACGAAATTAGGTGTTGAA 59.190 37.500 0.14 0.00 0.00 2.69
1496 1608 4.370049 TGACGAACGAAATTAGGTGTTGA 58.630 39.130 0.14 0.00 0.00 3.18
1497 1609 4.718858 TGACGAACGAAATTAGGTGTTG 57.281 40.909 0.14 0.00 0.00 3.33
1498 1610 5.050567 GTCTTGACGAACGAAATTAGGTGTT 60.051 40.000 0.14 0.00 0.00 3.32
1516 1628 6.153000 GTCTCCTTATGAGTTAGGTGTCTTGA 59.847 42.308 0.00 0.00 42.12 3.02
1594 1713 1.148310 CTAGGCGCCGAATAACCATG 58.852 55.000 23.20 0.00 0.00 3.66
1596 1715 1.000506 GATCTAGGCGCCGAATAACCA 59.999 52.381 23.20 0.13 0.00 3.67
1608 1727 4.022503 GCCAAGGATTCATTTGATCTAGGC 60.023 45.833 0.00 0.00 0.00 3.93
1610 1729 6.896021 ATGCCAAGGATTCATTTGATCTAG 57.104 37.500 0.00 0.00 0.00 2.43
1640 1759 3.074538 GGACATCCTGGGCTATTTACCAT 59.925 47.826 0.00 0.00 35.93 3.55
1665 1784 6.480763 TCAAATCTTACACTAGCATTCCCAA 58.519 36.000 0.00 0.00 0.00 4.12
1679 1798 9.994432 CATCATTAAGGTTGTCTCAAATCTTAC 57.006 33.333 0.00 0.00 33.50 2.34
1701 1820 8.359875 TGAACCAATAGAAATAAAAGGCATCA 57.640 30.769 0.00 0.00 0.00 3.07
1710 1829 7.779798 CCCCTGATTCTGAACCAATAGAAATAA 59.220 37.037 0.00 0.00 36.59 1.40
1712 1831 6.068853 TCCCCTGATTCTGAACCAATAGAAAT 60.069 38.462 0.00 0.00 36.59 2.17
1742 1867 2.097466 CCGTCTGTGCCATTCATTAACC 59.903 50.000 0.00 0.00 0.00 2.85
1754 1879 4.053295 TCAACTAAAAGTACCGTCTGTGC 58.947 43.478 0.00 0.00 0.00 4.57
1755 1880 5.045215 TGTCAACTAAAAGTACCGTCTGTG 58.955 41.667 0.00 0.00 0.00 3.66
1756 1881 5.266733 TGTCAACTAAAAGTACCGTCTGT 57.733 39.130 0.00 0.00 0.00 3.41
1757 1882 6.347402 CCAATGTCAACTAAAAGTACCGTCTG 60.347 42.308 0.00 0.00 0.00 3.51
1758 1883 5.699458 CCAATGTCAACTAAAAGTACCGTCT 59.301 40.000 0.00 0.00 0.00 4.18
1759 1884 5.467735 ACCAATGTCAACTAAAAGTACCGTC 59.532 40.000 0.00 0.00 0.00 4.79
1760 1885 5.370679 ACCAATGTCAACTAAAAGTACCGT 58.629 37.500 0.00 0.00 0.00 4.83
1761 1886 5.934935 ACCAATGTCAACTAAAAGTACCG 57.065 39.130 0.00 0.00 0.00 4.02
1762 1887 9.227777 AGATTACCAATGTCAACTAAAAGTACC 57.772 33.333 0.00 0.00 0.00 3.34
1768 1893 8.723311 CGGTTAAGATTACCAATGTCAACTAAA 58.277 33.333 0.00 0.00 35.31 1.85
1769 1894 7.334921 CCGGTTAAGATTACCAATGTCAACTAA 59.665 37.037 0.00 0.00 35.31 2.24
1770 1895 6.819649 CCGGTTAAGATTACCAATGTCAACTA 59.180 38.462 0.00 0.00 35.31 2.24
1771 1896 5.646360 CCGGTTAAGATTACCAATGTCAACT 59.354 40.000 0.00 0.00 35.31 3.16
1772 1897 5.675323 GCCGGTTAAGATTACCAATGTCAAC 60.675 44.000 1.90 0.00 35.31 3.18
1773 1898 4.396790 GCCGGTTAAGATTACCAATGTCAA 59.603 41.667 1.90 0.00 35.31 3.18
1774 1899 3.942748 GCCGGTTAAGATTACCAATGTCA 59.057 43.478 1.90 0.00 35.31 3.58
1775 1900 3.942748 TGCCGGTTAAGATTACCAATGTC 59.057 43.478 1.90 0.00 35.31 3.06
1776 1901 3.692593 GTGCCGGTTAAGATTACCAATGT 59.307 43.478 1.90 0.00 35.31 2.71
1777 1902 3.242608 CGTGCCGGTTAAGATTACCAATG 60.243 47.826 1.90 0.00 35.31 2.82
1781 1906 1.292992 CCGTGCCGGTTAAGATTACC 58.707 55.000 1.90 0.00 42.73 2.85
1851 1976 2.876550 GTTCGTGTTACAAAAGGAGCCT 59.123 45.455 0.00 0.00 0.00 4.58
1882 2007 6.968904 CACATGACTAGACCATTTATGCAAAC 59.031 38.462 0.00 0.00 0.00 2.93
1903 2029 5.240183 GCCATAGCATGATGAAACTACACAT 59.760 40.000 0.00 0.00 39.53 3.21
1975 2101 3.389329 AGGACAGAACCTATGCCATGTAG 59.611 47.826 0.00 0.00 38.65 2.74
2017 2143 2.039137 AGACTCGGGAAGGGGGTC 59.961 66.667 0.00 0.00 0.00 4.46
2019 2145 3.787001 GCAGACTCGGGAAGGGGG 61.787 72.222 0.00 0.00 0.00 5.40
2153 2279 7.154656 GGAAGGACAAATAATTGAGCAGTTTT 58.845 34.615 0.00 0.00 38.94 2.43
2183 2309 2.419297 CCTGTACTGATCAGAGGTTGGC 60.419 54.545 29.27 10.41 35.20 4.52
2187 2313 2.834549 CCAACCTGTACTGATCAGAGGT 59.165 50.000 29.27 25.56 35.44 3.85
2266 2392 6.967199 GCAACTGCTACCAAAAATGTACTATC 59.033 38.462 0.00 0.00 38.21 2.08
2267 2393 6.852664 GCAACTGCTACCAAAAATGTACTAT 58.147 36.000 0.00 0.00 38.21 2.12
2310 2438 7.658261 TGCACCACTACAATAGTCATATACTC 58.342 38.462 0.00 0.00 39.80 2.59
2318 2446 4.513442 TGGATTGCACCACTACAATAGTC 58.487 43.478 0.00 0.00 36.65 2.59
2332 2460 1.066215 ACTGCGTGTATCTGGATTGCA 60.066 47.619 0.00 0.00 0.00 4.08
2421 2549 7.184779 GGTCTTTTAGCCGATAACAACATAAC 58.815 38.462 0.00 0.00 0.00 1.89
2455 2583 2.853235 AACTACACAGTAACAGCCCC 57.147 50.000 0.00 0.00 33.48 5.80
2530 2658 3.186613 GCTCGCATAACCATAGCTAAACC 59.813 47.826 0.00 0.00 0.00 3.27
2585 2713 9.119418 TCAACACTTTCAATTCTTGTCTCATAA 57.881 29.630 0.00 0.00 0.00 1.90
2609 2737 6.038161 CGAATAAACCAATAAGCTGTCCATCA 59.962 38.462 0.00 0.00 0.00 3.07
2615 2743 5.497474 ACTCCGAATAAACCAATAAGCTGT 58.503 37.500 0.00 0.00 0.00 4.40
2832 2960 6.601741 AGCCACAAAAACAACATACATTTG 57.398 33.333 0.00 0.00 37.10 2.32
2872 3001 9.951866 ATATGTTCTTTTATCCATTAACCCCTT 57.048 29.630 0.00 0.00 0.00 3.95
2917 3046 7.985634 TGTTCAACTTTAACTTCTTCATTGC 57.014 32.000 0.00 0.00 0.00 3.56
2951 3080 8.478066 ACCCTATTTGGAAGAAAATAGCAAATC 58.522 33.333 10.00 0.00 43.92 2.17
2990 3119 5.829924 CCACCATGACCTATAAAAATGAGCT 59.170 40.000 0.00 0.00 0.00 4.09
3124 3253 2.545526 CGGTAGTCGAGCGGATTAGTAA 59.454 50.000 0.00 0.00 45.37 2.24
3141 3270 5.231702 AGTTTTATTCACCCAACTCGGTA 57.768 39.130 0.00 0.00 33.67 4.02
3438 3567 0.310854 CCAAGTTTGTCCGTTCTGCC 59.689 55.000 0.00 0.00 0.00 4.85
3445 3574 3.064931 GGAAGTAGACCAAGTTTGTCCG 58.935 50.000 3.56 0.00 0.00 4.79
3605 3777 4.439305 ACAAGCATGCACGAAAACATAT 57.561 36.364 21.98 0.00 0.00 1.78
3615 3787 6.695278 TGTTCTTAACTTTTACAAGCATGCAC 59.305 34.615 21.98 3.13 32.57 4.57
3779 3951 9.628746 GTCTATTAGCCTATTGACTAGTTTAGC 57.371 37.037 0.00 0.00 30.74 3.09
3899 4071 2.902705 TTCGAAACAGGTACAGCTGT 57.097 45.000 25.12 25.12 35.00 4.40
4069 4241 1.896660 ACCACCAACACGCCATGTC 60.897 57.895 0.00 0.00 42.31 3.06
4227 4399 4.452825 AGAGTCATGAAGATGAATGCCTG 58.547 43.478 0.00 0.00 40.39 4.85
4280 4452 5.050499 CGGCATATGCAGAAAGAGAAGTAAG 60.050 44.000 28.07 0.00 44.36 2.34
4281 4453 4.811024 CGGCATATGCAGAAAGAGAAGTAA 59.189 41.667 28.07 0.00 44.36 2.24
4282 4454 4.141937 ACGGCATATGCAGAAAGAGAAGTA 60.142 41.667 30.65 0.00 44.36 2.24
4504 4686 2.627945 GGCATATCAGACACGTGGAAA 58.372 47.619 21.57 2.40 0.00 3.13
4509 4691 2.501723 AGAAAGGGCATATCAGACACGT 59.498 45.455 0.00 0.00 0.00 4.49
4520 4702 2.561478 ACGTTGTGTAGAAAGGGCAT 57.439 45.000 0.00 0.00 0.00 4.40
4792 4974 8.977505 CCTTAAGAATCAATCTTTTCGCAAAAA 58.022 29.630 3.36 0.00 46.39 1.94
4793 4975 8.141268 ACCTTAAGAATCAATCTTTTCGCAAAA 58.859 29.630 3.36 0.00 46.39 2.44
4794 4976 7.657336 ACCTTAAGAATCAATCTTTTCGCAAA 58.343 30.769 3.36 0.00 46.39 3.68
4795 4977 7.214467 ACCTTAAGAATCAATCTTTTCGCAA 57.786 32.000 3.36 0.00 46.39 4.85
4796 4978 6.817765 ACCTTAAGAATCAATCTTTTCGCA 57.182 33.333 3.36 0.00 46.39 5.10
4797 4979 9.620660 TTAAACCTTAAGAATCAATCTTTTCGC 57.379 29.630 3.36 0.00 46.39 4.70
4957 5139 1.661480 CCAACACCGTCCACGACTA 59.339 57.895 0.00 0.00 43.02 2.59
4958 5140 2.420043 CCAACACCGTCCACGACT 59.580 61.111 0.00 0.00 43.02 4.18
4967 5149 0.321671 ACTCATCAGACCCAACACCG 59.678 55.000 0.00 0.00 0.00 4.94
5050 5232 7.064134 CAGTACAACAATAATCGCTTACCTTGA 59.936 37.037 0.00 0.00 0.00 3.02
5139 5321 2.161410 ACACACACACACACACACAATC 59.839 45.455 0.00 0.00 0.00 2.67
5140 5322 2.095314 CACACACACACACACACACAAT 60.095 45.455 0.00 0.00 0.00 2.71
5192 5385 9.081997 CAAAGTTTTTGTATGTACACAACACAT 57.918 29.630 11.42 0.00 42.09 3.21
5248 5441 2.178984 AGTTCCCATTTTCCCCACAGAA 59.821 45.455 0.00 0.00 0.00 3.02
5250 5443 2.309136 AGTTCCCATTTTCCCCACAG 57.691 50.000 0.00 0.00 0.00 3.66
5253 5446 4.780554 GGAATAAAGTTCCCATTTTCCCCA 59.219 41.667 0.00 0.00 32.48 4.96
5255 5448 6.156083 TCATGGAATAAAGTTCCCATTTTCCC 59.844 38.462 4.50 0.00 37.30 3.97
5305 5501 1.825474 CTCCGTGTATCAAGGACCTGT 59.175 52.381 0.00 0.00 37.12 4.00
5350 5546 4.940463 TGGCTAATTACAGTCGTATGGAC 58.060 43.478 0.00 0.00 46.45 4.02
5353 5549 6.040247 TCAACTGGCTAATTACAGTCGTATG 58.960 40.000 8.68 4.90 46.49 2.39
5354 5550 6.216801 TCAACTGGCTAATTACAGTCGTAT 57.783 37.500 8.68 0.00 46.49 3.06
5373 5569 6.543831 AGGTCAAAATAGGATAGCACATCAAC 59.456 38.462 1.34 0.00 0.00 3.18
5379 5575 6.587273 AGAAGAGGTCAAAATAGGATAGCAC 58.413 40.000 0.00 0.00 0.00 4.40
5436 5633 0.398318 ACTGGTCTGAAGCCTGAACC 59.602 55.000 0.00 0.00 0.00 3.62
5546 5745 2.608090 GGGAGCAACGCTGAAACTATAC 59.392 50.000 0.00 0.00 39.88 1.47
5568 5767 3.631250 AGATAAAAACCATGACGCCCAT 58.369 40.909 0.00 0.00 35.44 4.00
5616 5819 9.739276 TTTATGTGATCAAAGATACTCAACCTT 57.261 29.630 0.00 0.00 0.00 3.50
5649 5852 7.707624 AAGATGCTAATTGTGATCCTCAAAA 57.292 32.000 4.89 0.00 0.00 2.44
5652 5855 7.707624 AAAAAGATGCTAATTGTGATCCTCA 57.292 32.000 0.00 0.00 0.00 3.86
5677 5880 3.125146 CGATGCGGTCAATTCTGAAGAAA 59.875 43.478 0.00 0.00 37.61 2.52
5678 5881 2.672874 CGATGCGGTCAATTCTGAAGAA 59.327 45.455 0.00 0.00 38.56 2.52
5679 5882 2.270923 CGATGCGGTCAATTCTGAAGA 58.729 47.619 0.00 0.00 31.88 2.87
5680 5883 1.267732 GCGATGCGGTCAATTCTGAAG 60.268 52.381 0.00 0.00 31.88 3.02
5681 5884 0.726827 GCGATGCGGTCAATTCTGAA 59.273 50.000 0.00 0.00 31.88 3.02
5682 5885 2.383170 GCGATGCGGTCAATTCTGA 58.617 52.632 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.