Multiple sequence alignment - TraesCS2A01G499700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G499700 chr2A 100.000 3197 0 0 1 3197 729177280 729174084 0.000000e+00 5904
1 TraesCS2A01G499700 chr2A 95.575 113 5 0 2886 2998 622751738 622751850 7.040000e-42 182
2 TraesCS2A01G499700 chr2D 89.360 1673 85 30 838 2447 594553086 594551444 0.000000e+00 2017
3 TraesCS2A01G499700 chr2D 91.489 611 29 10 2465 3069 594551371 594550778 0.000000e+00 819
4 TraesCS2A01G499700 chr2D 82.195 747 61 38 71 768 594553803 594553080 7.690000e-161 577
5 TraesCS2A01G499700 chr2D 94.690 113 6 0 2886 2998 499027106 499026994 3.280000e-40 176
6 TraesCS2A01G499700 chr2B 93.505 1124 61 6 989 2103 722096360 722095240 0.000000e+00 1661
7 TraesCS2A01G499700 chr2B 83.548 1009 81 47 2104 3069 722095212 722094246 0.000000e+00 865
8 TraesCS2A01G499700 chr2B 82.845 956 83 41 70 985 722097317 722096403 0.000000e+00 782
9 TraesCS2A01G499700 chr3B 87.050 278 10 9 2471 2748 604554629 604554378 1.120000e-74 291
10 TraesCS2A01G499700 chr3B 86.331 278 16 13 2471 2748 738229278 738229023 1.880000e-72 283
11 TraesCS2A01G499700 chrUn 86.691 278 11 9 2471 2748 249824282 249824031 5.220000e-73 285
12 TraesCS2A01G499700 chrUn 86.691 278 11 9 2471 2748 316039579 316039328 5.220000e-73 285
13 TraesCS2A01G499700 chr1B 86.268 284 13 9 2465 2748 45043191 45043448 5.220000e-73 285
14 TraesCS2A01G499700 chr1B 86.268 284 13 9 2465 2748 45050696 45050953 5.220000e-73 285
15 TraesCS2A01G499700 chr4B 86.232 276 12 9 2473 2748 610015427 610015676 3.140000e-70 276
16 TraesCS2A01G499700 chr4B 85.971 278 13 9 2471 2748 602166450 602166199 1.130000e-69 274
17 TraesCS2A01G499700 chr5B 86.022 279 12 10 2471 2748 561794558 561794306 1.130000e-69 274
18 TraesCS2A01G499700 chr6D 94.690 113 6 0 2886 2998 419598078 419597966 3.280000e-40 176
19 TraesCS2A01G499700 chr6D 93.694 111 6 1 2889 2998 427935976 427935866 7.090000e-37 165
20 TraesCS2A01G499700 chr7B 94.495 109 6 0 2361 2469 673853162 673853054 5.480000e-38 169
21 TraesCS2A01G499700 chr7A 94.186 86 5 0 2913 2998 126704804 126704719 7.200000e-27 132
22 TraesCS2A01G499700 chr1D 97.333 75 2 0 2924 2998 350880614 350880688 9.310000e-26 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G499700 chr2A 729174084 729177280 3196 True 5904.000000 5904 100.000000 1 3197 1 chr2A.!!$R1 3196
1 TraesCS2A01G499700 chr2D 594550778 594553803 3025 True 1137.666667 2017 87.681333 71 3069 3 chr2D.!!$R2 2998
2 TraesCS2A01G499700 chr2B 722094246 722097317 3071 True 1102.666667 1661 86.632667 70 3069 3 chr2B.!!$R1 2999

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.103208 CTTCTTCCCCTCGTGGATCG 59.897 60.0 4.76 0.0 41.41 3.69 F
987 1077 0.106708 TCCCTGTGCAGTCAGTGTTC 59.893 55.0 3.87 0.0 34.02 3.18 F
2058 2196 0.097325 AGAGCAAGATCGTCGTCGTC 59.903 55.0 1.33 0.0 38.33 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1008 1137 0.179220 GGTGAGACGAGACTCGAACG 60.179 60.0 30.56 5.77 43.74 3.95 R
2079 2217 0.379669 GCTTCTTGACATGGCCGATG 59.620 55.0 12.06 12.06 38.15 3.84 R
3131 3413 0.105964 TAGCGTGCAAGAAGTGGTGT 59.894 50.0 2.99 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.269505 GTGCAATCTCTATCTACCACTGT 57.730 43.478 0.00 0.00 0.00 3.55
23 24 6.392625 GTGCAATCTCTATCTACCACTGTA 57.607 41.667 0.00 0.00 0.00 2.74
24 25 6.210078 GTGCAATCTCTATCTACCACTGTAC 58.790 44.000 0.00 0.00 0.00 2.90
25 26 5.891551 TGCAATCTCTATCTACCACTGTACA 59.108 40.000 0.00 0.00 0.00 2.90
26 27 6.183360 TGCAATCTCTATCTACCACTGTACAC 60.183 42.308 0.00 0.00 0.00 2.90
27 28 6.183360 GCAATCTCTATCTACCACTGTACACA 60.183 42.308 0.00 0.00 0.00 3.72
28 29 7.630728 GCAATCTCTATCTACCACTGTACACAA 60.631 40.741 0.00 0.00 0.00 3.33
29 30 8.417106 CAATCTCTATCTACCACTGTACACAAT 58.583 37.037 0.00 0.00 0.00 2.71
30 31 9.642343 AATCTCTATCTACCACTGTACACAATA 57.358 33.333 0.00 0.00 0.00 1.90
31 32 9.815306 ATCTCTATCTACCACTGTACACAATAT 57.185 33.333 0.00 0.00 0.00 1.28
32 33 9.067986 TCTCTATCTACCACTGTACACAATATG 57.932 37.037 0.00 0.00 0.00 1.78
33 34 8.762481 TCTATCTACCACTGTACACAATATGT 57.238 34.615 0.00 0.00 46.06 2.29
47 48 6.441093 CACAATATGTGTTTGGTAGCATCT 57.559 37.500 0.00 0.00 43.08 2.90
48 49 6.855836 CACAATATGTGTTTGGTAGCATCTT 58.144 36.000 0.00 0.00 43.08 2.40
49 50 6.968904 CACAATATGTGTTTGGTAGCATCTTC 59.031 38.462 0.00 0.00 43.08 2.87
50 51 6.886459 ACAATATGTGTTTGGTAGCATCTTCT 59.114 34.615 0.00 0.00 37.01 2.85
51 52 7.394359 ACAATATGTGTTTGGTAGCATCTTCTT 59.606 33.333 0.00 0.00 37.01 2.52
52 53 5.886960 ATGTGTTTGGTAGCATCTTCTTC 57.113 39.130 0.00 0.00 0.00 2.87
53 54 4.072131 TGTGTTTGGTAGCATCTTCTTCC 58.928 43.478 0.00 0.00 0.00 3.46
54 55 3.440522 GTGTTTGGTAGCATCTTCTTCCC 59.559 47.826 0.00 0.00 0.00 3.97
55 56 3.017442 GTTTGGTAGCATCTTCTTCCCC 58.983 50.000 0.00 0.00 0.00 4.81
56 57 2.270434 TGGTAGCATCTTCTTCCCCT 57.730 50.000 0.00 0.00 0.00 4.79
57 58 2.119495 TGGTAGCATCTTCTTCCCCTC 58.881 52.381 0.00 0.00 0.00 4.30
58 59 1.069358 GGTAGCATCTTCTTCCCCTCG 59.931 57.143 0.00 0.00 0.00 4.63
59 60 1.757699 GTAGCATCTTCTTCCCCTCGT 59.242 52.381 0.00 0.00 0.00 4.18
60 61 0.539051 AGCATCTTCTTCCCCTCGTG 59.461 55.000 0.00 0.00 0.00 4.35
61 62 0.462759 GCATCTTCTTCCCCTCGTGG 60.463 60.000 0.00 0.00 0.00 4.94
62 63 1.195115 CATCTTCTTCCCCTCGTGGA 58.805 55.000 4.76 0.00 35.39 4.02
63 64 1.765314 CATCTTCTTCCCCTCGTGGAT 59.235 52.381 4.76 0.00 35.39 3.41
64 65 1.486211 TCTTCTTCCCCTCGTGGATC 58.514 55.000 4.76 0.00 35.39 3.36
65 66 0.103208 CTTCTTCCCCTCGTGGATCG 59.897 60.000 4.76 0.00 41.41 3.69
66 67 0.323999 TTCTTCCCCTCGTGGATCGA 60.324 55.000 4.76 0.00 46.83 3.59
93 94 2.510906 GATACCTGTGGCCGGCAT 59.489 61.111 30.85 11.35 0.00 4.40
99 100 4.783621 TGTGGCCGGCATCAGCTC 62.784 66.667 30.85 11.71 41.70 4.09
130 131 2.667418 CTGGAGCCCCTCACTGTG 59.333 66.667 0.17 0.17 31.08 3.66
131 132 2.122413 TGGAGCCCCTCACTGTGT 60.122 61.111 7.79 0.00 31.08 3.72
133 134 2.217038 GGAGCCCCTCACTGTGTCA 61.217 63.158 7.79 0.00 31.08 3.58
134 135 1.004440 GAGCCCCTCACTGTGTCAC 60.004 63.158 7.79 0.00 0.00 3.67
135 136 1.460305 AGCCCCTCACTGTGTCACT 60.460 57.895 7.79 0.00 0.00 3.41
136 137 1.302033 GCCCCTCACTGTGTCACTG 60.302 63.158 7.79 8.21 0.00 3.66
137 138 1.372683 CCCCTCACTGTGTCACTGG 59.627 63.158 13.69 5.15 0.00 4.00
139 140 0.319728 CCCTCACTGTGTCACTGGAG 59.680 60.000 13.69 14.69 0.00 3.86
141 142 0.390492 CTCACTGTGTCACTGGAGCA 59.610 55.000 13.69 0.00 0.00 4.26
144 149 1.331756 CACTGTGTCACTGGAGCAAAC 59.668 52.381 13.69 0.00 0.00 2.93
162 167 4.143473 GCAAACACAAAGAGAATTGCATCG 60.143 41.667 3.64 0.00 41.93 3.84
193 202 5.428253 TGCATACAGATACAGGGAGAAAAC 58.572 41.667 0.00 0.00 0.00 2.43
200 209 5.049405 CAGATACAGGGAGAAAACACACAAC 60.049 44.000 0.00 0.00 0.00 3.32
227 236 4.776795 AACAAAATACGGTTAGGCCTTG 57.223 40.909 12.58 0.30 34.25 3.61
230 239 0.538118 AATACGGTTAGGCCTTGCGA 59.462 50.000 12.58 0.00 34.25 5.10
258 267 9.778741 TTTCTTTACTCAACTAGAATGTGATGT 57.221 29.630 0.00 0.00 0.00 3.06
295 310 2.304221 AAAAACAAGAGGGGGTAGGC 57.696 50.000 0.00 0.00 0.00 3.93
348 363 2.423538 ACAAGGTGTTGAAAGTGCAGAC 59.576 45.455 0.00 0.00 37.10 3.51
380 401 4.112341 CAGCTCAGCCGCTTTGCC 62.112 66.667 9.91 0.00 38.41 4.52
389 410 3.121030 CGCTTTGCCGACCCTCTG 61.121 66.667 0.00 0.00 0.00 3.35
409 435 1.472990 CTTTTGTTTGGGTTCGACGC 58.527 50.000 0.00 0.00 0.00 5.19
446 477 2.866762 GTGGCTAAAAGGAGCAGTATCG 59.133 50.000 0.00 0.00 44.76 2.92
447 478 2.158957 TGGCTAAAAGGAGCAGTATCGG 60.159 50.000 0.00 0.00 44.76 4.18
448 479 1.867865 GCTAAAAGGAGCAGTATCGGC 59.132 52.381 0.00 0.00 42.36 5.54
449 480 2.483889 GCTAAAAGGAGCAGTATCGGCT 60.484 50.000 0.00 0.00 46.07 5.52
450 481 3.243771 GCTAAAAGGAGCAGTATCGGCTA 60.244 47.826 0.00 0.00 42.78 3.93
451 482 3.460857 AAAAGGAGCAGTATCGGCTAG 57.539 47.619 0.00 0.00 42.78 3.42
452 483 2.074729 AAGGAGCAGTATCGGCTAGT 57.925 50.000 0.00 0.00 42.78 2.57
465 510 0.523519 GGCTAGTGGAAAGCAAGCAC 59.476 55.000 0.00 0.00 41.93 4.40
468 513 2.350522 CTAGTGGAAAGCAAGCACGAT 58.649 47.619 0.00 0.00 0.00 3.73
473 518 0.455633 GAAAGCAAGCACGATGGCAG 60.456 55.000 0.00 0.00 35.83 4.85
482 527 1.755179 CACGATGGCAGGGAGATTTT 58.245 50.000 0.00 0.00 0.00 1.82
495 540 1.286257 GAGATTTTTGCCCCTCCTCCT 59.714 52.381 0.00 0.00 0.00 3.69
516 561 1.205893 GCAGACGTCTCCTCCTTGAAT 59.794 52.381 16.96 0.00 0.00 2.57
529 574 1.800586 CCTTGAATCAGACACACCACG 59.199 52.381 0.00 0.00 0.00 4.94
535 580 2.203015 AGACACACCACGCCACAC 60.203 61.111 0.00 0.00 0.00 3.82
538 595 3.582120 CACACCACGCCACACCAC 61.582 66.667 0.00 0.00 0.00 4.16
550 607 0.754957 CACACCACCAGGCAGGAAAA 60.755 55.000 1.67 0.00 41.22 2.29
551 608 0.468029 ACACCACCAGGCAGGAAAAG 60.468 55.000 1.67 0.00 41.22 2.27
649 716 8.864087 AGTGCCTTATTTTCTCTTGATTTTCTT 58.136 29.630 0.00 0.00 0.00 2.52
664 731 8.868522 TTGATTTTCTTGTGGAAGTATCATCT 57.131 30.769 0.00 0.00 37.03 2.90
672 739 8.270030 TCTTGTGGAAGTATCATCTTGATTCAT 58.730 33.333 0.00 0.00 38.26 2.57
675 742 9.716531 TGTGGAAGTATCATCTTGATTCATATC 57.283 33.333 0.00 0.00 38.26 1.63
731 801 5.567138 AGTTTCTTCTTTCTTGGTGTGTG 57.433 39.130 0.00 0.00 0.00 3.82
751 821 3.868077 GTGCTGTATTTAGCTGAGACTGG 59.132 47.826 0.00 0.00 44.01 4.00
775 849 0.814010 GAATTGGATAGTGCGCGGGT 60.814 55.000 8.83 0.00 0.00 5.28
777 851 0.466543 ATTGGATAGTGCGCGGGTTA 59.533 50.000 8.83 0.00 0.00 2.85
785 859 1.068816 AGTGCGCGGGTTAAAATGAAC 60.069 47.619 8.83 0.00 0.00 3.18
786 860 1.068816 GTGCGCGGGTTAAAATGAACT 60.069 47.619 8.83 0.00 0.00 3.01
787 861 2.160022 GTGCGCGGGTTAAAATGAACTA 59.840 45.455 8.83 0.00 0.00 2.24
788 862 2.417239 TGCGCGGGTTAAAATGAACTAG 59.583 45.455 8.83 0.00 0.00 2.57
818 892 0.319900 GTCAGCTCGCAGTTCTTCCA 60.320 55.000 0.00 0.00 0.00 3.53
825 903 1.651240 CGCAGTTCTTCCATGGGCAG 61.651 60.000 13.02 8.73 0.00 4.85
829 907 1.034292 GTTCTTCCATGGGCAGCTCC 61.034 60.000 13.02 0.00 0.00 4.70
834 912 1.454479 CCATGGGCAGCTCCGATTT 60.454 57.895 2.85 0.00 30.07 2.17
836 914 0.383231 CATGGGCAGCTCCGATTTTC 59.617 55.000 0.00 0.00 30.07 2.29
855 933 9.831737 CGATTTTCTATCAGTTGTTCTTTTGAT 57.168 29.630 0.00 0.00 34.81 2.57
877 955 2.906389 TGGCAATCAGTTCCTCTGTACT 59.094 45.455 0.00 0.00 43.97 2.73
879 957 4.160439 TGGCAATCAGTTCCTCTGTACTAG 59.840 45.833 0.00 0.00 43.97 2.57
901 988 8.524487 ACTAGTAGAACGAATGAATTCTCAAGT 58.476 33.333 7.05 0.00 36.56 3.16
908 995 5.406780 ACGAATGAATTCTCAAGTGACTGAC 59.593 40.000 7.05 0.00 34.49 3.51
909 996 5.636965 CGAATGAATTCTCAAGTGACTGACT 59.363 40.000 7.05 0.00 34.49 3.41
923 1010 5.936956 AGTGACTGACTGATTGATTTCCTTC 59.063 40.000 0.00 0.00 31.75 3.46
926 1013 6.373495 TGACTGACTGATTGATTTCCTTCATG 59.627 38.462 0.00 0.00 0.00 3.07
927 1014 5.125097 ACTGACTGATTGATTTCCTTCATGC 59.875 40.000 0.00 0.00 0.00 4.06
928 1015 4.095334 TGACTGATTGATTTCCTTCATGCG 59.905 41.667 0.00 0.00 0.00 4.73
953 1043 4.362476 GGTTGGCAGGGCGCAAAG 62.362 66.667 10.83 0.00 45.17 2.77
956 1046 2.130426 TTGGCAGGGCGCAAAGAAA 61.130 52.632 10.83 0.00 45.17 2.52
985 1075 0.546122 TTTCCCTGTGCAGTCAGTGT 59.454 50.000 3.87 0.00 34.02 3.55
986 1076 0.546122 TTCCCTGTGCAGTCAGTGTT 59.454 50.000 3.87 0.00 34.02 3.32
987 1077 0.106708 TCCCTGTGCAGTCAGTGTTC 59.893 55.000 3.87 0.00 34.02 3.18
1023 1152 2.475158 CGCGTTCGAGTCTCGTCT 59.525 61.111 21.15 0.00 41.35 4.18
1056 1185 3.819188 CAGAAGCTGGGCGATTCC 58.181 61.111 0.00 0.00 38.79 3.01
1057 1186 2.176273 CAGAAGCTGGGCGATTCCG 61.176 63.158 0.00 0.00 38.79 4.30
1076 1205 1.364626 GACATGAAGCTGACGCCCAG 61.365 60.000 0.00 1.43 45.67 4.45
1110 1245 2.200370 ACCACCTCACCGTCCTCA 59.800 61.111 0.00 0.00 0.00 3.86
1111 1246 1.458777 ACCACCTCACCGTCCTCAA 60.459 57.895 0.00 0.00 0.00 3.02
1116 1251 1.663739 CTCACCGTCCTCAACCGAA 59.336 57.895 0.00 0.00 0.00 4.30
1286 1424 2.892334 GCTTCTTCACGCACCGCAA 61.892 57.895 0.00 0.00 0.00 4.85
1376 1514 2.574399 GGTGCTGGACCTCGACTC 59.426 66.667 11.48 0.00 42.25 3.36
1564 1702 3.569049 AAGAACCGCTGGACCGTCG 62.569 63.158 1.50 0.00 0.00 5.12
1677 1815 3.827898 CTGGACTCGGCGGAGGTC 61.828 72.222 23.45 17.17 44.93 3.85
1911 2049 2.278013 GTCATCGACGGACGCCTC 60.278 66.667 3.59 0.00 42.26 4.70
1923 2061 1.810532 ACGCCTCTTCGTCATCTCC 59.189 57.895 0.00 0.00 38.44 3.71
1983 2121 0.107456 CGGATTCCTGGGATCCTGTG 59.893 60.000 27.70 11.89 32.46 3.66
2058 2196 0.097325 AGAGCAAGATCGTCGTCGTC 59.903 55.000 1.33 0.00 38.33 4.20
2079 2217 1.079127 CCGTGGTCTCCATGTGGTC 60.079 63.158 7.15 0.00 38.76 4.02
2185 2350 1.396301 CGCCTTCAAGCAGTCAGATTC 59.604 52.381 0.00 0.00 0.00 2.52
2197 2362 5.814705 AGCAGTCAGATTCTACATGCTTAAC 59.185 40.000 11.04 0.00 39.36 2.01
2198 2363 5.814705 GCAGTCAGATTCTACATGCTTAACT 59.185 40.000 0.00 0.00 0.00 2.24
2199 2364 6.019156 GCAGTCAGATTCTACATGCTTAACTC 60.019 42.308 0.00 0.00 0.00 3.01
2229 2397 8.709308 TGCCTCTAGAATAAATAAAAGCTCTCT 58.291 33.333 0.00 0.00 0.00 3.10
2239 2407 7.944729 AAATAAAAGCTCTCTTAATCTGCCA 57.055 32.000 0.00 0.00 31.02 4.92
2240 2408 7.944729 AATAAAAGCTCTCTTAATCTGCCAA 57.055 32.000 0.00 0.00 31.02 4.52
2241 2409 7.944729 ATAAAAGCTCTCTTAATCTGCCAAA 57.055 32.000 0.00 0.00 31.02 3.28
2242 2410 6.655078 AAAAGCTCTCTTAATCTGCCAAAA 57.345 33.333 0.00 0.00 31.02 2.44
2243 2411 5.893897 AAGCTCTCTTAATCTGCCAAAAG 57.106 39.130 0.00 0.00 0.00 2.27
2244 2412 5.171339 AGCTCTCTTAATCTGCCAAAAGA 57.829 39.130 0.00 0.00 0.00 2.52
2261 2432 3.391506 AAGAAAAGCCCTGTTTGATGC 57.608 42.857 0.00 0.00 0.00 3.91
2264 2435 3.006217 AGAAAAGCCCTGTTTGATGCTTC 59.994 43.478 0.00 0.00 42.85 3.86
2276 2447 7.699391 CCTGTTTGATGCTTCTGTATGTTATTG 59.301 37.037 0.88 0.00 0.00 1.90
2277 2448 8.109705 TGTTTGATGCTTCTGTATGTTATTGT 57.890 30.769 0.88 0.00 0.00 2.71
2334 2516 9.911980 GTATAATCTGCAAATGATGATGTATCG 57.088 33.333 0.00 0.00 38.71 2.92
2337 2519 5.852827 TCTGCAAATGATGATGTATCGGTA 58.147 37.500 0.00 0.00 38.71 4.02
2352 2534 7.285783 TGTATCGGTAAAGAAACAATTCGAG 57.714 36.000 0.00 0.00 40.63 4.04
2449 2653 6.076981 ACTTGTTGCTGAATTTCCAACTAG 57.923 37.500 18.66 18.66 43.21 2.57
2454 2685 6.204688 TGTTGCTGAATTTCCAACTAGTGTAG 59.795 38.462 15.16 0.00 39.53 2.74
2455 2686 5.865085 TGCTGAATTTCCAACTAGTGTAGT 58.135 37.500 0.00 0.00 41.73 2.73
2456 2687 6.999950 TGCTGAATTTCCAACTAGTGTAGTA 58.000 36.000 0.00 0.00 38.26 1.82
2457 2688 6.872020 TGCTGAATTTCCAACTAGTGTAGTAC 59.128 38.462 0.00 0.00 38.26 2.73
2458 2689 6.872020 GCTGAATTTCCAACTAGTGTAGTACA 59.128 38.462 0.00 0.00 38.26 2.90
2459 2690 7.549488 GCTGAATTTCCAACTAGTGTAGTACAT 59.451 37.037 6.21 0.00 38.26 2.29
2461 2692 9.787435 TGAATTTCCAACTAGTGTAGTACATTT 57.213 29.630 6.21 1.07 38.26 2.32
2498 2762 3.191162 TGCCAGATGATTGGACGAAAAAG 59.809 43.478 0.00 0.00 40.87 2.27
2499 2763 3.191371 GCCAGATGATTGGACGAAAAAGT 59.809 43.478 0.00 0.00 40.87 2.66
2501 2765 5.106317 GCCAGATGATTGGACGAAAAAGTTA 60.106 40.000 0.00 0.00 40.87 2.24
2502 2766 6.569610 GCCAGATGATTGGACGAAAAAGTTAA 60.570 38.462 0.00 0.00 40.87 2.01
2557 2833 1.374252 ACCGCAAACGCTAGTCCAG 60.374 57.895 0.00 0.00 38.22 3.86
2639 2915 6.127083 ACCAACTGAAACCTGACATTGAAAAT 60.127 34.615 0.00 0.00 0.00 1.82
2640 2916 7.069331 ACCAACTGAAACCTGACATTGAAAATA 59.931 33.333 0.00 0.00 0.00 1.40
2641 2917 7.596248 CCAACTGAAACCTGACATTGAAAATAG 59.404 37.037 0.00 0.00 0.00 1.73
2724 3006 6.156083 TCCTGAATTTTTCCCTTGTGAAAACT 59.844 34.615 0.00 0.00 42.29 2.66
2725 3007 6.258507 CCTGAATTTTTCCCTTGTGAAAACTG 59.741 38.462 0.00 0.00 42.29 3.16
2727 3009 7.390027 TGAATTTTTCCCTTGTGAAAACTGAA 58.610 30.769 0.00 0.00 42.29 3.02
2728 3010 7.548780 TGAATTTTTCCCTTGTGAAAACTGAAG 59.451 33.333 0.00 0.00 42.29 3.02
2729 3011 5.337578 TTTTCCCTTGTGAAAACTGAAGG 57.662 39.130 0.00 0.00 38.84 3.46
2730 3012 3.943671 TCCCTTGTGAAAACTGAAGGA 57.056 42.857 0.00 0.00 37.74 3.36
2731 3013 4.453480 TCCCTTGTGAAAACTGAAGGAT 57.547 40.909 0.00 0.00 37.74 3.24
2741 3023 2.100605 ACTGAAGGATTTGCGGAGAC 57.899 50.000 0.00 0.00 0.00 3.36
2835 3117 2.686835 ACCCTGCTCTCCCTGCTC 60.687 66.667 0.00 0.00 0.00 4.26
3051 3333 1.078918 CAGCATCGCCTCCACTTCA 60.079 57.895 0.00 0.00 0.00 3.02
3065 3347 1.078426 CTTCAGGCCCCGTGTAAGG 60.078 63.158 0.00 0.00 0.00 2.69
3070 3352 4.796495 GCCCCGTGTAAGGCCCTG 62.796 72.222 0.00 0.00 43.76 4.45
3071 3353 3.006728 CCCCGTGTAAGGCCCTGA 61.007 66.667 0.00 0.00 0.00 3.86
3072 3354 2.598787 CCCCGTGTAAGGCCCTGAA 61.599 63.158 0.00 0.00 0.00 3.02
3073 3355 1.376812 CCCGTGTAAGGCCCTGAAC 60.377 63.158 0.00 0.00 0.00 3.18
3074 3356 1.376812 CCGTGTAAGGCCCTGAACC 60.377 63.158 0.00 0.00 0.00 3.62
3075 3357 1.376812 CGTGTAAGGCCCTGAACCC 60.377 63.158 0.00 0.00 0.00 4.11
3076 3358 1.001269 GTGTAAGGCCCTGAACCCC 60.001 63.158 0.00 0.00 0.00 4.95
3077 3359 1.151677 TGTAAGGCCCTGAACCCCT 60.152 57.895 0.00 0.00 0.00 4.79
3078 3360 1.303282 GTAAGGCCCTGAACCCCTG 59.697 63.158 0.00 0.00 0.00 4.45
3079 3361 1.162329 TAAGGCCCTGAACCCCTGA 59.838 57.895 0.00 0.00 0.00 3.86
3080 3362 1.205460 TAAGGCCCTGAACCCCTGAC 61.205 60.000 0.00 0.00 0.00 3.51
3081 3363 4.410400 GGCCCTGAACCCCTGACG 62.410 72.222 0.00 0.00 0.00 4.35
3083 3365 4.410400 CCCTGAACCCCTGACGCC 62.410 72.222 0.00 0.00 0.00 5.68
3084 3366 4.410400 CCTGAACCCCTGACGCCC 62.410 72.222 0.00 0.00 0.00 6.13
3085 3367 3.322466 CTGAACCCCTGACGCCCT 61.322 66.667 0.00 0.00 0.00 5.19
3086 3368 3.612247 CTGAACCCCTGACGCCCTG 62.612 68.421 0.00 0.00 0.00 4.45
3098 3380 3.518003 GCCCTGCGATGCATTTCT 58.482 55.556 0.00 0.00 38.13 2.52
3099 3381 1.358046 GCCCTGCGATGCATTTCTC 59.642 57.895 0.00 0.00 38.13 2.87
3100 3382 1.378882 GCCCTGCGATGCATTTCTCA 61.379 55.000 0.00 0.00 38.13 3.27
3101 3383 1.097232 CCCTGCGATGCATTTCTCAA 58.903 50.000 0.00 0.00 38.13 3.02
3102 3384 1.202222 CCCTGCGATGCATTTCTCAAC 60.202 52.381 0.00 0.00 38.13 3.18
3103 3385 1.741706 CCTGCGATGCATTTCTCAACT 59.258 47.619 0.00 0.00 38.13 3.16
3104 3386 2.223203 CCTGCGATGCATTTCTCAACTC 60.223 50.000 0.00 0.00 38.13 3.01
3105 3387 2.676839 CTGCGATGCATTTCTCAACTCT 59.323 45.455 0.00 0.00 38.13 3.24
3106 3388 2.674852 TGCGATGCATTTCTCAACTCTC 59.325 45.455 0.00 0.00 31.71 3.20
3107 3389 2.935201 GCGATGCATTTCTCAACTCTCT 59.065 45.455 0.00 0.00 0.00 3.10
3108 3390 3.242349 GCGATGCATTTCTCAACTCTCTG 60.242 47.826 0.00 0.00 0.00 3.35
3109 3391 4.179298 CGATGCATTTCTCAACTCTCTGA 58.821 43.478 0.00 0.00 0.00 3.27
3110 3392 4.032672 CGATGCATTTCTCAACTCTCTGAC 59.967 45.833 0.00 0.00 0.00 3.51
3111 3393 4.341366 TGCATTTCTCAACTCTCTGACA 57.659 40.909 0.00 0.00 0.00 3.58
3112 3394 4.060900 TGCATTTCTCAACTCTCTGACAC 58.939 43.478 0.00 0.00 0.00 3.67
3113 3395 3.122613 GCATTTCTCAACTCTCTGACACG 59.877 47.826 0.00 0.00 0.00 4.49
3114 3396 4.302455 CATTTCTCAACTCTCTGACACGT 58.698 43.478 0.00 0.00 0.00 4.49
3115 3397 3.627732 TTCTCAACTCTCTGACACGTC 57.372 47.619 0.00 0.00 0.00 4.34
3116 3398 2.852449 TCTCAACTCTCTGACACGTCT 58.148 47.619 0.00 0.00 0.00 4.18
3117 3399 2.809119 TCTCAACTCTCTGACACGTCTC 59.191 50.000 0.00 0.00 0.00 3.36
3118 3400 1.531578 TCAACTCTCTGACACGTCTCG 59.468 52.381 0.00 0.00 0.00 4.04
3119 3401 1.264557 CAACTCTCTGACACGTCTCGT 59.735 52.381 0.00 0.00 42.36 4.18
3131 3413 3.364889 ACGTCTCGTGAACAAATCTCA 57.635 42.857 0.00 0.00 39.18 3.27
3132 3414 3.050619 ACGTCTCGTGAACAAATCTCAC 58.949 45.455 0.00 0.00 39.18 3.51
3133 3415 3.049912 CGTCTCGTGAACAAATCTCACA 58.950 45.455 4.07 0.00 42.80 3.58
3134 3416 3.121328 CGTCTCGTGAACAAATCTCACAC 60.121 47.826 4.07 0.00 42.80 3.82
3135 3417 3.184581 GTCTCGTGAACAAATCTCACACC 59.815 47.826 4.07 0.00 42.80 4.16
3136 3418 3.130633 CTCGTGAACAAATCTCACACCA 58.869 45.455 4.07 0.00 42.80 4.17
3137 3419 2.869801 TCGTGAACAAATCTCACACCAC 59.130 45.455 4.07 0.00 42.80 4.16
3138 3420 2.872245 CGTGAACAAATCTCACACCACT 59.128 45.455 4.07 0.00 42.80 4.00
3139 3421 3.312421 CGTGAACAAATCTCACACCACTT 59.688 43.478 4.07 0.00 42.80 3.16
3140 3422 4.552767 CGTGAACAAATCTCACACCACTTC 60.553 45.833 4.07 0.00 42.80 3.01
3141 3423 4.576463 GTGAACAAATCTCACACCACTTCT 59.424 41.667 0.00 0.00 42.32 2.85
3142 3424 5.066505 GTGAACAAATCTCACACCACTTCTT 59.933 40.000 0.00 0.00 42.32 2.52
3143 3425 5.066375 TGAACAAATCTCACACCACTTCTTG 59.934 40.000 0.00 0.00 0.00 3.02
3144 3426 3.316308 ACAAATCTCACACCACTTCTTGC 59.684 43.478 0.00 0.00 0.00 4.01
3145 3427 2.936919 ATCTCACACCACTTCTTGCA 57.063 45.000 0.00 0.00 0.00 4.08
3146 3428 1.953559 TCTCACACCACTTCTTGCAC 58.046 50.000 0.00 0.00 0.00 4.57
3147 3429 0.583438 CTCACACCACTTCTTGCACG 59.417 55.000 0.00 0.00 0.00 5.34
3148 3430 1.009675 CACACCACTTCTTGCACGC 60.010 57.895 0.00 0.00 0.00 5.34
3149 3431 1.153168 ACACCACTTCTTGCACGCT 60.153 52.632 0.00 0.00 0.00 5.07
3150 3432 0.105964 ACACCACTTCTTGCACGCTA 59.894 50.000 0.00 0.00 0.00 4.26
3151 3433 1.270839 ACACCACTTCTTGCACGCTAT 60.271 47.619 0.00 0.00 0.00 2.97
3152 3434 1.806542 CACCACTTCTTGCACGCTATT 59.193 47.619 0.00 0.00 0.00 1.73
3153 3435 1.806542 ACCACTTCTTGCACGCTATTG 59.193 47.619 0.00 0.00 0.00 1.90
3154 3436 1.806542 CCACTTCTTGCACGCTATTGT 59.193 47.619 0.00 0.00 0.00 2.71
3155 3437 3.000041 CCACTTCTTGCACGCTATTGTA 59.000 45.455 0.00 0.00 0.00 2.41
3156 3438 3.435327 CCACTTCTTGCACGCTATTGTAA 59.565 43.478 0.00 0.00 0.00 2.41
3157 3439 4.083537 CCACTTCTTGCACGCTATTGTAAA 60.084 41.667 0.00 0.00 0.00 2.01
3158 3440 5.448438 CACTTCTTGCACGCTATTGTAAAA 58.552 37.500 0.00 0.00 0.00 1.52
3159 3441 6.086222 CACTTCTTGCACGCTATTGTAAAAT 58.914 36.000 0.00 0.00 0.00 1.82
3160 3442 6.249260 CACTTCTTGCACGCTATTGTAAAATC 59.751 38.462 0.00 0.00 0.00 2.17
3161 3443 5.871465 TCTTGCACGCTATTGTAAAATCA 57.129 34.783 0.00 0.00 0.00 2.57
3162 3444 5.627172 TCTTGCACGCTATTGTAAAATCAC 58.373 37.500 0.00 0.00 0.00 3.06
3163 3445 5.180304 TCTTGCACGCTATTGTAAAATCACA 59.820 36.000 0.00 0.00 0.00 3.58
3164 3446 5.559427 TGCACGCTATTGTAAAATCACAT 57.441 34.783 0.00 0.00 0.00 3.21
3165 3447 5.948588 TGCACGCTATTGTAAAATCACATT 58.051 33.333 0.00 0.00 0.00 2.71
3166 3448 5.799435 TGCACGCTATTGTAAAATCACATTG 59.201 36.000 0.00 0.00 0.00 2.82
3167 3449 5.275881 GCACGCTATTGTAAAATCACATTGC 60.276 40.000 0.00 0.00 0.00 3.56
3168 3450 5.229887 CACGCTATTGTAAAATCACATTGCC 59.770 40.000 0.00 0.00 0.00 4.52
3169 3451 5.125417 ACGCTATTGTAAAATCACATTGCCT 59.875 36.000 0.00 0.00 0.00 4.75
3170 3452 5.456497 CGCTATTGTAAAATCACATTGCCTG 59.544 40.000 0.00 0.00 0.00 4.85
3171 3453 6.332630 GCTATTGTAAAATCACATTGCCTGT 58.667 36.000 0.00 0.00 39.20 4.00
3172 3454 6.813152 GCTATTGTAAAATCACATTGCCTGTT 59.187 34.615 0.00 0.00 35.29 3.16
3173 3455 7.009540 GCTATTGTAAAATCACATTGCCTGTTC 59.990 37.037 0.00 0.00 35.29 3.18
3174 3456 6.403866 TTGTAAAATCACATTGCCTGTTCT 57.596 33.333 0.00 0.00 35.29 3.01
3175 3457 7.517614 TTGTAAAATCACATTGCCTGTTCTA 57.482 32.000 0.00 0.00 35.29 2.10
3176 3458 7.144722 TGTAAAATCACATTGCCTGTTCTAG 57.855 36.000 0.00 0.00 35.29 2.43
3177 3459 6.714810 TGTAAAATCACATTGCCTGTTCTAGT 59.285 34.615 0.00 0.00 35.29 2.57
3178 3460 7.880713 TGTAAAATCACATTGCCTGTTCTAGTA 59.119 33.333 0.00 0.00 35.29 1.82
3179 3461 7.944729 AAAATCACATTGCCTGTTCTAGTAT 57.055 32.000 0.00 0.00 35.29 2.12
3180 3462 6.932356 AATCACATTGCCTGTTCTAGTATG 57.068 37.500 0.00 0.00 35.29 2.39
3181 3463 5.420725 TCACATTGCCTGTTCTAGTATGT 57.579 39.130 0.00 0.00 35.29 2.29
3182 3464 6.538945 TCACATTGCCTGTTCTAGTATGTA 57.461 37.500 0.00 0.00 35.29 2.29
3183 3465 6.941857 TCACATTGCCTGTTCTAGTATGTAA 58.058 36.000 0.00 0.00 35.29 2.41
3184 3466 7.390823 TCACATTGCCTGTTCTAGTATGTAAA 58.609 34.615 0.00 0.00 35.29 2.01
3185 3467 7.880713 TCACATTGCCTGTTCTAGTATGTAAAA 59.119 33.333 0.00 0.00 35.29 1.52
3186 3468 8.511321 CACATTGCCTGTTCTAGTATGTAAAAA 58.489 33.333 0.00 0.00 35.29 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.269505 ACAGTGGTAGATAGAGATTGCAC 57.730 43.478 0.00 0.00 0.00 4.57
1 2 5.891551 TGTACAGTGGTAGATAGAGATTGCA 59.108 40.000 0.00 0.00 0.00 4.08
2 3 6.183360 TGTGTACAGTGGTAGATAGAGATTGC 60.183 42.308 0.00 0.00 0.00 3.56
3 4 7.334844 TGTGTACAGTGGTAGATAGAGATTG 57.665 40.000 0.00 0.00 0.00 2.67
4 5 7.956328 TTGTGTACAGTGGTAGATAGAGATT 57.044 36.000 0.00 0.00 0.00 2.40
5 6 9.815306 ATATTGTGTACAGTGGTAGATAGAGAT 57.185 33.333 0.00 0.00 0.00 2.75
6 7 9.067986 CATATTGTGTACAGTGGTAGATAGAGA 57.932 37.037 0.00 0.00 0.00 3.10
7 8 8.851145 ACATATTGTGTACAGTGGTAGATAGAG 58.149 37.037 0.00 0.00 39.91 2.43
8 9 8.630037 CACATATTGTGTACAGTGGTAGATAGA 58.370 37.037 0.00 0.00 43.08 1.98
9 10 8.803201 CACATATTGTGTACAGTGGTAGATAG 57.197 38.462 0.00 0.00 43.08 2.08
25 26 6.886459 AGAAGATGCTACCAAACACATATTGT 59.114 34.615 0.00 0.00 41.74 2.71
26 27 7.325660 AGAAGATGCTACCAAACACATATTG 57.674 36.000 0.00 0.00 0.00 1.90
27 28 7.067494 GGAAGAAGATGCTACCAAACACATATT 59.933 37.037 0.00 0.00 0.00 1.28
28 29 6.543831 GGAAGAAGATGCTACCAAACACATAT 59.456 38.462 0.00 0.00 0.00 1.78
29 30 5.880332 GGAAGAAGATGCTACCAAACACATA 59.120 40.000 0.00 0.00 0.00 2.29
30 31 4.702131 GGAAGAAGATGCTACCAAACACAT 59.298 41.667 0.00 0.00 0.00 3.21
31 32 4.072131 GGAAGAAGATGCTACCAAACACA 58.928 43.478 0.00 0.00 0.00 3.72
32 33 3.440522 GGGAAGAAGATGCTACCAAACAC 59.559 47.826 0.00 0.00 0.00 3.32
33 34 3.561313 GGGGAAGAAGATGCTACCAAACA 60.561 47.826 0.00 0.00 0.00 2.83
34 35 3.017442 GGGGAAGAAGATGCTACCAAAC 58.983 50.000 0.00 0.00 0.00 2.93
35 36 2.919602 AGGGGAAGAAGATGCTACCAAA 59.080 45.455 0.00 0.00 0.00 3.28
36 37 2.505819 GAGGGGAAGAAGATGCTACCAA 59.494 50.000 0.00 0.00 0.00 3.67
37 38 2.119495 GAGGGGAAGAAGATGCTACCA 58.881 52.381 0.00 0.00 0.00 3.25
38 39 1.069358 CGAGGGGAAGAAGATGCTACC 59.931 57.143 0.00 0.00 0.00 3.18
39 40 1.757699 ACGAGGGGAAGAAGATGCTAC 59.242 52.381 0.00 0.00 0.00 3.58
40 41 1.757118 CACGAGGGGAAGAAGATGCTA 59.243 52.381 0.00 0.00 0.00 3.49
41 42 0.539051 CACGAGGGGAAGAAGATGCT 59.461 55.000 0.00 0.00 0.00 3.79
42 43 0.462759 CCACGAGGGGAAGAAGATGC 60.463 60.000 0.00 0.00 0.00 3.91
43 44 1.195115 TCCACGAGGGGAAGAAGATG 58.805 55.000 0.00 0.00 37.22 2.90
44 45 2.043227 GATCCACGAGGGGAAGAAGAT 58.957 52.381 0.00 0.00 41.12 2.40
45 46 1.486211 GATCCACGAGGGGAAGAAGA 58.514 55.000 0.00 0.00 41.12 2.87
46 47 0.103208 CGATCCACGAGGGGAAGAAG 59.897 60.000 0.00 0.00 45.77 2.85
47 48 0.323999 TCGATCCACGAGGGGAAGAA 60.324 55.000 0.00 0.00 46.45 2.52
48 49 1.305287 TCGATCCACGAGGGGAAGA 59.695 57.895 0.00 0.00 46.45 2.87
49 50 3.935024 TCGATCCACGAGGGGAAG 58.065 61.111 0.00 0.00 46.45 3.46
57 58 1.200020 TCCATCATCGATCGATCCACG 59.800 52.381 27.20 16.19 44.09 4.94
58 59 3.516981 ATCCATCATCGATCGATCCAC 57.483 47.619 27.20 0.00 31.62 4.02
59 60 3.381590 GGTATCCATCATCGATCGATCCA 59.618 47.826 27.20 17.04 31.62 3.41
60 61 3.634448 AGGTATCCATCATCGATCGATCC 59.366 47.826 27.20 20.97 31.62 3.36
61 62 4.097135 ACAGGTATCCATCATCGATCGATC 59.903 45.833 27.20 15.68 31.62 3.69
62 63 4.019858 ACAGGTATCCATCATCGATCGAT 58.980 43.478 24.60 24.60 34.81 3.59
63 64 3.191371 CACAGGTATCCATCATCGATCGA 59.809 47.826 21.86 21.86 0.00 3.59
64 65 3.505836 CACAGGTATCCATCATCGATCG 58.494 50.000 9.36 9.36 0.00 3.69
65 66 3.854666 CCACAGGTATCCATCATCGATC 58.145 50.000 0.00 0.00 0.00 3.69
66 67 2.027745 GCCACAGGTATCCATCATCGAT 60.028 50.000 0.00 0.00 0.00 3.59
67 68 1.344438 GCCACAGGTATCCATCATCGA 59.656 52.381 0.00 0.00 0.00 3.59
68 69 1.609061 GGCCACAGGTATCCATCATCG 60.609 57.143 0.00 0.00 0.00 3.84
93 94 2.093288 AGCTGAAAATCATCCGAGCTGA 60.093 45.455 0.00 0.00 0.00 4.26
99 100 1.332997 GCTCCAGCTGAAAATCATCCG 59.667 52.381 17.39 0.00 38.21 4.18
100 101 1.680207 GGCTCCAGCTGAAAATCATCC 59.320 52.381 17.39 0.79 41.70 3.51
101 102 1.680207 GGGCTCCAGCTGAAAATCATC 59.320 52.381 17.39 0.00 41.70 2.92
130 131 2.682856 TCTTTGTGTTTGCTCCAGTGAC 59.317 45.455 0.00 0.00 0.00 3.67
131 132 2.945008 CTCTTTGTGTTTGCTCCAGTGA 59.055 45.455 0.00 0.00 0.00 3.41
133 134 3.281727 TCTCTTTGTGTTTGCTCCAGT 57.718 42.857 0.00 0.00 0.00 4.00
134 135 4.843220 ATTCTCTTTGTGTTTGCTCCAG 57.157 40.909 0.00 0.00 0.00 3.86
135 136 4.737352 GCAATTCTCTTTGTGTTTGCTCCA 60.737 41.667 0.00 0.00 37.18 3.86
136 137 3.737774 GCAATTCTCTTTGTGTTTGCTCC 59.262 43.478 0.00 0.00 37.18 4.70
137 138 4.362279 TGCAATTCTCTTTGTGTTTGCTC 58.638 39.130 6.94 0.00 39.98 4.26
139 140 4.143473 CGATGCAATTCTCTTTGTGTTTGC 60.143 41.667 0.00 0.00 39.78 3.68
141 142 5.186996 ACGATGCAATTCTCTTTGTGTTT 57.813 34.783 0.00 0.00 0.00 2.83
144 149 3.123453 TCGACGATGCAATTCTCTTTGTG 59.877 43.478 0.00 0.00 0.00 3.33
162 167 4.445718 CCTGTATCTGTATGCATGTTCGAC 59.554 45.833 10.16 0.00 0.00 4.20
193 202 8.121167 ACCGTATTTTGTTTTATTGTTGTGTG 57.879 30.769 0.00 0.00 0.00 3.82
200 209 7.317390 AGGCCTAACCGTATTTTGTTTTATTG 58.683 34.615 1.29 0.00 46.52 1.90
227 236 8.443937 ACATTCTAGTTGAGTAAAGAAATTCGC 58.556 33.333 3.04 0.00 32.13 4.70
348 363 2.033194 GCTGAACCTTTCCCCGTCG 61.033 63.158 0.00 0.00 0.00 5.12
380 401 1.001378 CCAAACAAAAGCAGAGGGTCG 60.001 52.381 0.00 0.00 0.00 4.79
389 410 1.472990 CGTCGAACCCAAACAAAAGC 58.527 50.000 0.00 0.00 0.00 3.51
446 477 0.523519 GTGCTTGCTTTCCACTAGCC 59.476 55.000 0.00 0.00 37.85 3.93
447 478 0.166814 CGTGCTTGCTTTCCACTAGC 59.833 55.000 0.00 0.00 39.10 3.42
448 479 1.795768 TCGTGCTTGCTTTCCACTAG 58.204 50.000 0.00 0.00 0.00 2.57
449 480 2.076100 CATCGTGCTTGCTTTCCACTA 58.924 47.619 0.00 0.00 0.00 2.74
450 481 0.877071 CATCGTGCTTGCTTTCCACT 59.123 50.000 0.00 0.00 0.00 4.00
451 482 0.109597 CCATCGTGCTTGCTTTCCAC 60.110 55.000 0.00 0.00 0.00 4.02
452 483 1.865788 GCCATCGTGCTTGCTTTCCA 61.866 55.000 0.00 0.00 0.00 3.53
465 510 1.202336 GCAAAAATCTCCCTGCCATCG 60.202 52.381 0.00 0.00 0.00 3.84
473 518 0.336392 AGGAGGGGCAAAAATCTCCC 59.664 55.000 0.00 0.00 45.04 4.30
482 527 3.333219 CTGCAGGAGGAGGGGCAA 61.333 66.667 5.57 0.00 35.59 4.52
487 532 1.662438 GAGACGTCTGCAGGAGGAGG 61.662 65.000 25.58 2.70 33.43 4.30
495 540 0.539669 TCAAGGAGGAGACGTCTGCA 60.540 55.000 34.27 13.57 36.72 4.41
516 561 2.108157 GTGGCGTGGTGTGTCTGA 59.892 61.111 0.00 0.00 0.00 3.27
535 580 0.610232 CTCCTTTTCCTGCCTGGTGG 60.610 60.000 0.00 0.00 37.07 4.61
538 595 1.680314 GCCTCCTTTTCCTGCCTGG 60.680 63.158 0.00 0.00 37.10 4.45
550 607 1.622173 CCTTCTCTTCTCCTGCCTCCT 60.622 57.143 0.00 0.00 0.00 3.69
551 608 0.829990 CCTTCTCTTCTCCTGCCTCC 59.170 60.000 0.00 0.00 0.00 4.30
649 716 9.716531 GATATGAATCAAGATGATACTTCCACA 57.283 33.333 0.00 0.00 35.76 4.17
703 770 7.494625 CACACCAAGAAAGAAGAAACTACAGTA 59.505 37.037 0.00 0.00 0.00 2.74
704 771 6.316390 CACACCAAGAAAGAAGAAACTACAGT 59.684 38.462 0.00 0.00 0.00 3.55
705 772 6.316390 ACACACCAAGAAAGAAGAAACTACAG 59.684 38.462 0.00 0.00 0.00 2.74
706 773 6.093495 CACACACCAAGAAAGAAGAAACTACA 59.907 38.462 0.00 0.00 0.00 2.74
731 801 2.869192 GCCAGTCTCAGCTAAATACAGC 59.131 50.000 0.00 0.00 42.12 4.40
751 821 0.041839 CGCACTATCCAATTCGCAGC 60.042 55.000 0.00 0.00 0.00 5.25
775 849 7.235804 ACCAAACCCTAGCTAGTTCATTTTAA 58.764 34.615 19.31 0.00 0.00 1.52
777 851 5.641155 ACCAAACCCTAGCTAGTTCATTTT 58.359 37.500 19.31 7.93 0.00 1.82
785 859 1.834263 AGCTGACCAAACCCTAGCTAG 59.166 52.381 14.20 14.20 42.45 3.42
786 860 1.831736 GAGCTGACCAAACCCTAGCTA 59.168 52.381 0.00 0.00 44.11 3.32
787 861 0.615850 GAGCTGACCAAACCCTAGCT 59.384 55.000 0.00 0.00 46.50 3.32
788 862 0.741221 CGAGCTGACCAAACCCTAGC 60.741 60.000 0.00 0.00 34.71 3.42
818 892 0.257039 AGAAAATCGGAGCTGCCCAT 59.743 50.000 0.00 0.00 0.00 4.00
825 903 5.582665 AGAACAACTGATAGAAAATCGGAGC 59.417 40.000 0.96 0.00 0.00 4.70
829 907 9.831737 ATCAAAAGAACAACTGATAGAAAATCG 57.168 29.630 0.00 0.00 0.00 3.34
834 912 7.014134 TGCCAATCAAAAGAACAACTGATAGAA 59.986 33.333 0.00 0.00 0.00 2.10
836 914 6.680810 TGCCAATCAAAAGAACAACTGATAG 58.319 36.000 0.00 0.00 0.00 2.08
877 955 8.520351 TCACTTGAGAATTCATTCGTTCTACTA 58.480 33.333 8.44 0.00 41.56 1.82
879 957 7.329717 AGTCACTTGAGAATTCATTCGTTCTAC 59.670 37.037 8.44 0.00 41.56 2.59
901 988 5.868454 TGAAGGAAATCAATCAGTCAGTCA 58.132 37.500 0.00 0.00 0.00 3.41
908 995 3.369385 GCGCATGAAGGAAATCAATCAG 58.631 45.455 0.30 0.00 32.06 2.90
909 996 2.223317 CGCGCATGAAGGAAATCAATCA 60.223 45.455 8.75 0.00 32.06 2.57
927 1014 4.170062 CTGCCAACCTGATGCGCG 62.170 66.667 0.00 0.00 0.00 6.86
928 1015 3.818787 CCTGCCAACCTGATGCGC 61.819 66.667 0.00 0.00 0.00 6.09
985 1075 1.377202 GCATGCCCGTCTCCAAGAA 60.377 57.895 6.36 0.00 0.00 2.52
986 1076 2.268920 GCATGCCCGTCTCCAAGA 59.731 61.111 6.36 0.00 0.00 3.02
987 1077 3.197790 CGCATGCCCGTCTCCAAG 61.198 66.667 13.15 0.00 0.00 3.61
1008 1137 0.179220 GGTGAGACGAGACTCGAACG 60.179 60.000 30.56 5.77 43.74 3.95
1023 1152 1.606601 CTGGACCGGAGAGTGGTGA 60.607 63.158 9.46 0.00 40.63 4.02
1056 1185 2.456119 GGGCGTCAGCTTCATGTCG 61.456 63.158 0.00 0.00 44.37 4.35
1057 1186 1.364626 CTGGGCGTCAGCTTCATGTC 61.365 60.000 0.00 0.00 44.37 3.06
1091 1220 3.591254 GAGGACGGTGAGGTGGTGC 62.591 68.421 0.00 0.00 0.00 5.01
1096 1231 2.571216 CGGTTGAGGACGGTGAGGT 61.571 63.158 0.00 0.00 0.00 3.85
1098 1233 0.666577 GTTCGGTTGAGGACGGTGAG 60.667 60.000 0.00 0.00 0.00 3.51
1116 1251 4.021925 GGAGGTTGCTGCTCCGGT 62.022 66.667 0.00 0.00 0.00 5.28
1530 1668 3.529085 GTTCTTGCAAACGTCGTACTTC 58.471 45.455 0.00 0.00 0.00 3.01
1532 1670 1.862827 GGTTCTTGCAAACGTCGTACT 59.137 47.619 0.00 0.00 0.00 2.73
1564 1702 4.899239 CGAGAGCATCCGGGGCAC 62.899 72.222 19.02 13.57 33.66 5.01
1753 1891 4.874977 GTAGAGCCTGCCGCCGAC 62.875 72.222 0.00 0.00 38.78 4.79
1886 2024 2.178273 CGTCGATGACCACGCTGA 59.822 61.111 0.00 0.00 0.00 4.26
1887 2025 2.880879 CCGTCGATGACCACGCTG 60.881 66.667 6.11 0.00 34.58 5.18
1911 2049 1.931841 TCGTACTCGGAGATGACGAAG 59.068 52.381 22.40 5.09 45.81 3.79
1923 2061 2.032302 CACCTTCATCCTCTCGTACTCG 59.968 54.545 0.00 0.00 38.55 4.18
2058 2196 4.082523 ACATGGAGACCACGGCCG 62.083 66.667 26.86 26.86 35.80 6.13
2079 2217 0.379669 GCTTCTTGACATGGCCGATG 59.620 55.000 12.06 12.06 38.15 3.84
2112 2277 1.141254 TCCTGCCAACGAACCAAGTAA 59.859 47.619 0.00 0.00 0.00 2.24
2185 2350 4.764172 AGGCAGAAGAGTTAAGCATGTAG 58.236 43.478 0.00 0.00 0.00 2.74
2198 2363 9.331282 GCTTTTATTTATTCTAGAGGCAGAAGA 57.669 33.333 0.00 0.00 37.93 2.87
2199 2364 9.336171 AGCTTTTATTTATTCTAGAGGCAGAAG 57.664 33.333 0.00 0.00 37.93 2.85
2218 2386 7.665559 TCTTTTGGCAGATTAAGAGAGCTTTTA 59.334 33.333 0.00 0.00 35.56 1.52
2219 2387 6.491403 TCTTTTGGCAGATTAAGAGAGCTTTT 59.509 34.615 0.00 0.00 35.56 2.27
2220 2388 6.006449 TCTTTTGGCAGATTAAGAGAGCTTT 58.994 36.000 0.00 0.00 35.56 3.51
2221 2389 5.564550 TCTTTTGGCAGATTAAGAGAGCTT 58.435 37.500 0.00 0.00 38.15 3.74
2229 2397 4.592778 AGGGCTTTTCTTTTGGCAGATTAA 59.407 37.500 0.00 0.00 0.00 1.40
2232 2400 2.301009 CAGGGCTTTTCTTTTGGCAGAT 59.699 45.455 0.00 0.00 0.00 2.90
2238 2406 4.024641 GCATCAAACAGGGCTTTTCTTTTG 60.025 41.667 0.00 0.00 0.00 2.44
2239 2407 4.129380 GCATCAAACAGGGCTTTTCTTTT 58.871 39.130 0.00 0.00 0.00 2.27
2240 2408 3.389002 AGCATCAAACAGGGCTTTTCTTT 59.611 39.130 0.00 0.00 31.34 2.52
2241 2409 2.967887 AGCATCAAACAGGGCTTTTCTT 59.032 40.909 0.00 0.00 31.34 2.52
2242 2410 2.601905 AGCATCAAACAGGGCTTTTCT 58.398 42.857 0.00 0.00 31.34 2.52
2243 2411 3.006217 AGAAGCATCAAACAGGGCTTTTC 59.994 43.478 0.00 0.00 45.81 2.29
2244 2412 2.967887 AGAAGCATCAAACAGGGCTTTT 59.032 40.909 0.00 0.00 45.81 2.27
2276 2447 8.989653 ACAGCAAGAAAGAGTCTACTAATAAC 57.010 34.615 0.00 0.00 34.56 1.89
2277 2448 8.803235 TGACAGCAAGAAAGAGTCTACTAATAA 58.197 33.333 0.00 0.00 34.56 1.40
2284 2458 5.991933 AGATGACAGCAAGAAAGAGTCTA 57.008 39.130 0.00 0.00 34.56 2.59
2285 2459 4.888326 AGATGACAGCAAGAAAGAGTCT 57.112 40.909 0.00 0.00 38.69 3.24
2286 2460 4.754114 ACAAGATGACAGCAAGAAAGAGTC 59.246 41.667 0.00 0.00 0.00 3.36
2295 2469 6.114767 TGCAGATTATACAAGATGACAGCAA 58.885 36.000 0.00 0.00 0.00 3.91
2334 2516 6.541111 ACAGTCTCGAATTGTTTCTTTACC 57.459 37.500 0.00 0.00 0.00 2.85
2337 2519 8.358148 TCTAGTACAGTCTCGAATTGTTTCTTT 58.642 33.333 0.00 0.00 0.00 2.52
2352 2534 5.662674 ACCCAGAAACATCTAGTACAGTC 57.337 43.478 0.00 0.00 0.00 3.51
2449 2653 8.656849 CAAATGGAGACTACAAATGTACTACAC 58.343 37.037 0.00 0.00 0.00 2.90
2454 2685 6.314784 GCACAAATGGAGACTACAAATGTAC 58.685 40.000 8.05 0.85 0.00 2.90
2455 2686 5.414454 GGCACAAATGGAGACTACAAATGTA 59.586 40.000 8.05 0.00 0.00 2.29
2456 2687 4.218417 GGCACAAATGGAGACTACAAATGT 59.782 41.667 0.00 0.00 0.00 2.71
2457 2688 4.218200 TGGCACAAATGGAGACTACAAATG 59.782 41.667 0.00 0.00 31.92 2.32
2458 2689 4.406456 TGGCACAAATGGAGACTACAAAT 58.594 39.130 0.00 0.00 31.92 2.32
2459 2690 3.820467 CTGGCACAAATGGAGACTACAAA 59.180 43.478 0.00 0.00 38.70 2.83
2461 2692 2.637382 TCTGGCACAAATGGAGACTACA 59.363 45.455 0.00 0.00 38.70 2.74
2462 2693 3.334583 TCTGGCACAAATGGAGACTAC 57.665 47.619 0.00 0.00 38.70 2.73
2498 2762 6.002653 AGGTAGATGGGGATTTCAGTTAAC 57.997 41.667 0.00 0.00 0.00 2.01
2499 2763 6.183360 CGTAGGTAGATGGGGATTTCAGTTAA 60.183 42.308 0.00 0.00 0.00 2.01
2501 2765 4.101119 CGTAGGTAGATGGGGATTTCAGTT 59.899 45.833 0.00 0.00 0.00 3.16
2502 2766 3.641906 CGTAGGTAGATGGGGATTTCAGT 59.358 47.826 0.00 0.00 0.00 3.41
2557 2833 2.029918 GGGTTGGATTCTTGTGCTGTTC 60.030 50.000 0.00 0.00 0.00 3.18
2639 2915 6.065374 TGAAAATTGGTTCAGTTGCCTACTA 58.935 36.000 0.00 0.00 34.56 1.82
2640 2916 4.892934 TGAAAATTGGTTCAGTTGCCTACT 59.107 37.500 0.00 0.00 37.68 2.57
2641 2917 5.195001 TGAAAATTGGTTCAGTTGCCTAC 57.805 39.130 0.00 0.00 32.56 3.18
2660 2936 3.565482 GCTGAAAACCATGTCTGACTGAA 59.435 43.478 9.51 0.00 0.00 3.02
2661 2937 3.141398 GCTGAAAACCATGTCTGACTGA 58.859 45.455 9.51 0.00 0.00 3.41
2662 2938 3.058432 CAGCTGAAAACCATGTCTGACTG 60.058 47.826 8.42 5.01 0.00 3.51
2663 2939 3.144506 CAGCTGAAAACCATGTCTGACT 58.855 45.455 8.42 0.00 0.00 3.41
2664 2940 2.351157 GCAGCTGAAAACCATGTCTGAC 60.351 50.000 20.43 0.00 0.00 3.51
2695 2971 6.523840 TCACAAGGGAAAAATTCAGGATTTG 58.476 36.000 0.00 0.00 37.98 2.32
2724 3006 0.391130 CGGTCTCCGCAAATCCTTCA 60.391 55.000 0.00 0.00 41.17 3.02
2725 3007 2.384203 CGGTCTCCGCAAATCCTTC 58.616 57.895 0.00 0.00 41.17 3.46
2806 3088 1.997874 GCAGGGTGGAGGTGAGGAT 60.998 63.158 0.00 0.00 0.00 3.24
3034 3316 1.220206 CTGAAGTGGAGGCGATGCT 59.780 57.895 0.00 0.00 0.00 3.79
3054 3336 2.598787 TTCAGGGCCTTACACGGGG 61.599 63.158 1.32 0.00 0.00 5.73
3069 3351 3.636231 CAGGGCGTCAGGGGTTCA 61.636 66.667 0.00 0.00 0.00 3.18
3081 3363 1.358046 GAGAAATGCATCGCAGGGC 59.642 57.895 0.00 0.00 43.65 5.19
3082 3364 1.097232 TTGAGAAATGCATCGCAGGG 58.903 50.000 0.00 0.00 43.65 4.45
3083 3365 1.741706 AGTTGAGAAATGCATCGCAGG 59.258 47.619 0.00 0.00 43.65 4.85
3084 3366 2.676839 AGAGTTGAGAAATGCATCGCAG 59.323 45.455 0.00 0.00 43.65 5.18
3085 3367 2.674852 GAGAGTTGAGAAATGCATCGCA 59.325 45.455 0.00 0.00 44.86 5.10
3086 3368 2.935201 AGAGAGTTGAGAAATGCATCGC 59.065 45.455 0.00 0.00 0.00 4.58
3087 3369 4.032672 GTCAGAGAGTTGAGAAATGCATCG 59.967 45.833 0.00 0.00 0.00 3.84
3088 3370 4.934001 TGTCAGAGAGTTGAGAAATGCATC 59.066 41.667 0.00 0.00 0.00 3.91
3089 3371 4.694509 GTGTCAGAGAGTTGAGAAATGCAT 59.305 41.667 0.00 0.00 0.00 3.96
3090 3372 4.060900 GTGTCAGAGAGTTGAGAAATGCA 58.939 43.478 0.00 0.00 0.00 3.96
3091 3373 3.122613 CGTGTCAGAGAGTTGAGAAATGC 59.877 47.826 0.00 0.00 0.00 3.56
3092 3374 4.302455 ACGTGTCAGAGAGTTGAGAAATG 58.698 43.478 0.00 0.00 0.00 2.32
3093 3375 4.279671 AGACGTGTCAGAGAGTTGAGAAAT 59.720 41.667 0.00 0.00 0.00 2.17
3094 3376 3.632604 AGACGTGTCAGAGAGTTGAGAAA 59.367 43.478 0.00 0.00 0.00 2.52
3095 3377 3.215151 AGACGTGTCAGAGAGTTGAGAA 58.785 45.455 0.00 0.00 0.00 2.87
3096 3378 2.809119 GAGACGTGTCAGAGAGTTGAGA 59.191 50.000 8.00 0.00 0.00 3.27
3097 3379 2.412195 CGAGACGTGTCAGAGAGTTGAG 60.412 54.545 13.65 0.00 0.00 3.02
3098 3380 1.531578 CGAGACGTGTCAGAGAGTTGA 59.468 52.381 13.65 0.00 0.00 3.18
3099 3381 1.264557 ACGAGACGTGTCAGAGAGTTG 59.735 52.381 13.65 0.00 39.18 3.16
3100 3382 1.595466 ACGAGACGTGTCAGAGAGTT 58.405 50.000 13.65 0.00 39.18 3.01
3101 3383 3.309052 ACGAGACGTGTCAGAGAGT 57.691 52.632 13.65 0.00 39.18 3.24
3111 3393 3.050619 GTGAGATTTGTTCACGAGACGT 58.949 45.455 0.00 0.00 42.36 4.34
3112 3394 3.049912 TGTGAGATTTGTTCACGAGACG 58.950 45.455 0.00 0.00 46.14 4.18
3113 3395 3.184581 GGTGTGAGATTTGTTCACGAGAC 59.815 47.826 0.00 0.00 46.14 3.36
3114 3396 3.181470 TGGTGTGAGATTTGTTCACGAGA 60.181 43.478 0.00 0.00 46.14 4.04
3115 3397 3.059597 GTGGTGTGAGATTTGTTCACGAG 60.060 47.826 0.00 0.00 46.14 4.18
3116 3398 2.869801 GTGGTGTGAGATTTGTTCACGA 59.130 45.455 0.00 0.00 46.14 4.35
3117 3399 2.872245 AGTGGTGTGAGATTTGTTCACG 59.128 45.455 1.50 0.00 46.14 4.35
3118 3400 4.576463 AGAAGTGGTGTGAGATTTGTTCAC 59.424 41.667 0.00 0.00 44.03 3.18
3119 3401 4.780815 AGAAGTGGTGTGAGATTTGTTCA 58.219 39.130 0.00 0.00 0.00 3.18
3120 3402 5.514279 CAAGAAGTGGTGTGAGATTTGTTC 58.486 41.667 0.00 0.00 0.00 3.18
3121 3403 4.202050 GCAAGAAGTGGTGTGAGATTTGTT 60.202 41.667 0.00 0.00 0.00 2.83
3122 3404 3.316308 GCAAGAAGTGGTGTGAGATTTGT 59.684 43.478 0.00 0.00 0.00 2.83
3123 3405 3.316029 TGCAAGAAGTGGTGTGAGATTTG 59.684 43.478 0.00 0.00 0.00 2.32
3124 3406 3.316308 GTGCAAGAAGTGGTGTGAGATTT 59.684 43.478 0.00 0.00 0.00 2.17
3125 3407 2.880890 GTGCAAGAAGTGGTGTGAGATT 59.119 45.455 0.00 0.00 0.00 2.40
3126 3408 2.498167 GTGCAAGAAGTGGTGTGAGAT 58.502 47.619 0.00 0.00 0.00 2.75
3127 3409 1.806247 CGTGCAAGAAGTGGTGTGAGA 60.806 52.381 0.00 0.00 0.00 3.27
3128 3410 0.583438 CGTGCAAGAAGTGGTGTGAG 59.417 55.000 0.00 0.00 0.00 3.51
3129 3411 1.436195 GCGTGCAAGAAGTGGTGTGA 61.436 55.000 2.99 0.00 0.00 3.58
3130 3412 1.009675 GCGTGCAAGAAGTGGTGTG 60.010 57.895 2.99 0.00 0.00 3.82
3131 3413 0.105964 TAGCGTGCAAGAAGTGGTGT 59.894 50.000 2.99 0.00 0.00 4.16
3132 3414 1.442769 ATAGCGTGCAAGAAGTGGTG 58.557 50.000 2.99 0.00 0.00 4.17
3133 3415 1.806542 CAATAGCGTGCAAGAAGTGGT 59.193 47.619 2.99 0.00 0.00 4.16
3134 3416 1.806542 ACAATAGCGTGCAAGAAGTGG 59.193 47.619 2.99 0.00 0.00 4.00
3135 3417 4.661993 TTACAATAGCGTGCAAGAAGTG 57.338 40.909 2.99 2.62 0.00 3.16
3136 3418 5.682943 TTTTACAATAGCGTGCAAGAAGT 57.317 34.783 2.99 0.00 0.00 3.01
3137 3419 6.249260 GTGATTTTACAATAGCGTGCAAGAAG 59.751 38.462 2.99 0.00 0.00 2.85
3138 3420 6.083630 GTGATTTTACAATAGCGTGCAAGAA 58.916 36.000 2.99 0.00 0.00 2.52
3139 3421 5.180304 TGTGATTTTACAATAGCGTGCAAGA 59.820 36.000 2.99 0.00 0.00 3.02
3140 3422 5.389778 TGTGATTTTACAATAGCGTGCAAG 58.610 37.500 0.00 0.00 0.00 4.01
3141 3423 5.363979 TGTGATTTTACAATAGCGTGCAA 57.636 34.783 0.00 0.00 0.00 4.08
3142 3424 5.559427 ATGTGATTTTACAATAGCGTGCA 57.441 34.783 0.00 0.00 33.69 4.57
3143 3425 5.275881 GCAATGTGATTTTACAATAGCGTGC 60.276 40.000 0.00 0.00 33.69 5.34
3144 3426 5.229887 GGCAATGTGATTTTACAATAGCGTG 59.770 40.000 0.00 0.00 33.69 5.34
3145 3427 5.125417 AGGCAATGTGATTTTACAATAGCGT 59.875 36.000 0.00 0.00 33.69 5.07
3146 3428 5.456497 CAGGCAATGTGATTTTACAATAGCG 59.544 40.000 0.00 0.00 33.69 4.26
3147 3429 6.332630 ACAGGCAATGTGATTTTACAATAGC 58.667 36.000 0.00 0.00 41.91 2.97
3148 3430 8.246180 AGAACAGGCAATGTGATTTTACAATAG 58.754 33.333 0.00 0.00 43.00 1.73
3149 3431 8.121305 AGAACAGGCAATGTGATTTTACAATA 57.879 30.769 0.00 0.00 43.00 1.90
3150 3432 6.996509 AGAACAGGCAATGTGATTTTACAAT 58.003 32.000 0.00 0.00 43.00 2.71
3151 3433 6.403866 AGAACAGGCAATGTGATTTTACAA 57.596 33.333 0.00 0.00 43.00 2.41
3152 3434 6.714810 ACTAGAACAGGCAATGTGATTTTACA 59.285 34.615 0.00 0.00 43.00 2.41
3153 3435 7.145932 ACTAGAACAGGCAATGTGATTTTAC 57.854 36.000 0.00 0.00 43.00 2.01
3154 3436 8.892723 CATACTAGAACAGGCAATGTGATTTTA 58.107 33.333 0.00 0.00 43.00 1.52
3155 3437 7.394359 ACATACTAGAACAGGCAATGTGATTTT 59.606 33.333 0.00 0.00 43.00 1.82
3156 3438 6.886459 ACATACTAGAACAGGCAATGTGATTT 59.114 34.615 0.00 0.00 43.00 2.17
3157 3439 6.418101 ACATACTAGAACAGGCAATGTGATT 58.582 36.000 0.00 0.00 43.00 2.57
3158 3440 5.994250 ACATACTAGAACAGGCAATGTGAT 58.006 37.500 0.00 0.00 43.00 3.06
3159 3441 5.420725 ACATACTAGAACAGGCAATGTGA 57.579 39.130 0.00 0.00 43.00 3.58
3160 3442 7.609760 TTTACATACTAGAACAGGCAATGTG 57.390 36.000 0.00 0.00 43.00 3.21
3161 3443 8.630054 TTTTTACATACTAGAACAGGCAATGT 57.370 30.769 0.00 0.00 46.97 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.