Multiple sequence alignment - TraesCS2A01G498900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G498900 chr2A 100.000 2640 0 0 1 2640 728933672 728936311 0 4876
1 TraesCS2A01G498900 chr5B 98.637 2641 35 1 1 2640 281832853 281830213 0 4676
2 TraesCS2A01G498900 chr5B 99.347 2297 14 1 1 2296 433002513 433000217 0 4157
3 TraesCS2A01G498900 chr5B 99.216 2296 18 0 1 2296 471294933 471292638 0 4141
4 TraesCS2A01G498900 chr5B 98.868 2297 25 1 1 2296 351469616 351467320 0 4096
5 TraesCS2A01G498900 chr5B 97.377 610 16 0 2031 2640 471293021 471292412 0 1038
6 TraesCS2A01G498900 chr5B 95.922 613 21 3 2031 2640 351467703 351467092 0 990
7 TraesCS2A01G498900 chr7A 99.434 2297 11 2 1 2296 16005011 16007306 0 4169
8 TraesCS2A01G498900 chr7A 97.381 611 14 2 2031 2640 16006924 16007533 0 1038
9 TraesCS2A01G498900 chr6B 98.824 2296 23 1 1 2296 381313994 381311703 0 4087
10 TraesCS2A01G498900 chr7B 98.737 2296 29 0 1 2296 133432653 133430358 0 4080
11 TraesCS2A01G498900 chr7B 96.072 611 22 2 2031 2640 102654525 102655134 0 994
12 TraesCS2A01G498900 chr4B 98.476 2297 34 1 1 2296 649623167 649625463 0 4047
13 TraesCS2A01G498900 chr4B 94.926 611 28 3 2031 2640 649625080 649625688 0 953
14 TraesCS2A01G498900 chr4A 98.476 2296 35 0 1 2296 735292695 735294990 0 4047
15 TraesCS2A01G498900 chrUn 97.381 611 14 2 2031 2640 416567219 416566610 0 1038
16 TraesCS2A01G498900 chr1B 95.922 613 21 3 2031 2640 302770445 302769834 0 990
17 TraesCS2A01G498900 chr5A 96.540 578 17 3 2064 2640 591475635 591476210 0 953


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G498900 chr2A 728933672 728936311 2639 False 4876.0 4876 100.0000 1 2640 1 chr2A.!!$F1 2639
1 TraesCS2A01G498900 chr5B 281830213 281832853 2640 True 4676.0 4676 98.6370 1 2640 1 chr5B.!!$R1 2639
2 TraesCS2A01G498900 chr5B 433000217 433002513 2296 True 4157.0 4157 99.3470 1 2296 1 chr5B.!!$R2 2295
3 TraesCS2A01G498900 chr5B 471292412 471294933 2521 True 2589.5 4141 98.2965 1 2640 2 chr5B.!!$R4 2639
4 TraesCS2A01G498900 chr5B 351467092 351469616 2524 True 2543.0 4096 97.3950 1 2640 2 chr5B.!!$R3 2639
5 TraesCS2A01G498900 chr7A 16005011 16007533 2522 False 2603.5 4169 98.4075 1 2640 2 chr7A.!!$F1 2639
6 TraesCS2A01G498900 chr6B 381311703 381313994 2291 True 4087.0 4087 98.8240 1 2296 1 chr6B.!!$R1 2295
7 TraesCS2A01G498900 chr7B 133430358 133432653 2295 True 4080.0 4080 98.7370 1 2296 1 chr7B.!!$R1 2295
8 TraesCS2A01G498900 chr7B 102654525 102655134 609 False 994.0 994 96.0720 2031 2640 1 chr7B.!!$F1 609
9 TraesCS2A01G498900 chr4B 649623167 649625688 2521 False 2500.0 4047 96.7010 1 2640 2 chr4B.!!$F1 2639
10 TraesCS2A01G498900 chr4A 735292695 735294990 2295 False 4047.0 4047 98.4760 1 2296 1 chr4A.!!$F1 2295
11 TraesCS2A01G498900 chrUn 416566610 416567219 609 True 1038.0 1038 97.3810 2031 2640 1 chrUn.!!$R1 609
12 TraesCS2A01G498900 chr1B 302769834 302770445 611 True 990.0 990 95.9220 2031 2640 1 chr1B.!!$R1 609
13 TraesCS2A01G498900 chr5A 591475635 591476210 575 False 953.0 953 96.5400 2064 2640 1 chr5A.!!$F1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 318 2.350458 GGTTGACATGGGCGCCAAT 61.35 57.895 30.85 22.12 36.95 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1973 1978 0.039708 GTGAGCAAAGCAAGCCAGAC 60.04 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
316 318 2.350458 GGTTGACATGGGCGCCAAT 61.350 57.895 30.85 22.12 36.95 3.16
491 493 4.864704 ACAATTTGGTAGCGGTCATTTT 57.135 36.364 0.78 0.00 0.00 1.82
1809 1814 6.291322 CGAGACTAGTTGATATGCTTTGTTCG 60.291 42.308 0.00 0.00 0.00 3.95
1955 1960 4.388465 TCTGCCTCCCAGATCCAG 57.612 61.111 0.00 0.00 45.44 3.86
1956 1961 1.705950 TCTGCCTCCCAGATCCAGA 59.294 57.895 0.00 0.00 45.44 3.86
1957 1962 0.689080 TCTGCCTCCCAGATCCAGAC 60.689 60.000 0.00 0.00 45.44 3.51
1958 1963 2.025767 CTGCCTCCCAGATCCAGACG 62.026 65.000 0.00 0.00 44.64 4.18
1959 1964 2.818132 CCTCCCAGATCCAGACGC 59.182 66.667 0.00 0.00 0.00 5.19
1960 1965 2.801631 CCTCCCAGATCCAGACGCC 61.802 68.421 0.00 0.00 0.00 5.68
1961 1966 2.038813 TCCCAGATCCAGACGCCA 59.961 61.111 0.00 0.00 0.00 5.69
1962 1967 2.025767 CTCCCAGATCCAGACGCCAG 62.026 65.000 0.00 0.00 0.00 4.85
1963 1968 2.503061 CCAGATCCAGACGCCAGG 59.497 66.667 0.00 0.00 0.00 4.45
1964 1969 2.503061 CAGATCCAGACGCCAGGG 59.497 66.667 0.00 0.00 0.00 4.45
1965 1970 2.039624 AGATCCAGACGCCAGGGT 59.960 61.111 0.00 0.00 0.00 4.34
1966 1971 2.060980 AGATCCAGACGCCAGGGTC 61.061 63.158 6.74 6.74 35.19 4.46
1967 1972 3.083997 ATCCAGACGCCAGGGTCC 61.084 66.667 10.87 0.00 37.66 4.46
1981 1986 4.021925 GTCCCTGGCGTCTGGCTT 62.022 66.667 7.54 0.00 42.94 4.35
1982 1987 4.020617 TCCCTGGCGTCTGGCTTG 62.021 66.667 7.54 0.00 42.94 4.01
1984 1989 4.711949 CCTGGCGTCTGGCTTGCT 62.712 66.667 0.00 0.00 42.94 3.91
1985 1990 2.670934 CTGGCGTCTGGCTTGCTT 60.671 61.111 0.00 0.00 42.94 3.91
1986 1991 2.203337 TGGCGTCTGGCTTGCTTT 60.203 55.556 0.00 0.00 42.94 3.51
1987 1992 2.256461 GGCGTCTGGCTTGCTTTG 59.744 61.111 0.00 0.00 42.94 2.77
1988 1993 2.429739 GCGTCTGGCTTGCTTTGC 60.430 61.111 0.00 0.00 39.11 3.68
1989 1994 2.912624 GCGTCTGGCTTGCTTTGCT 61.913 57.895 0.00 0.00 39.11 3.91
1990 1995 1.208614 CGTCTGGCTTGCTTTGCTC 59.791 57.895 0.00 0.00 0.00 4.26
1991 1996 1.509644 CGTCTGGCTTGCTTTGCTCA 61.510 55.000 0.00 0.00 0.00 4.26
1992 1997 0.039708 GTCTGGCTTGCTTTGCTCAC 60.040 55.000 0.00 0.00 0.00 3.51
1993 1998 1.081641 CTGGCTTGCTTTGCTCACG 60.082 57.895 0.00 0.00 0.00 4.35
1994 1999 2.429739 GGCTTGCTTTGCTCACGC 60.430 61.111 0.00 0.00 0.00 5.34
1995 2000 2.332514 GCTTGCTTTGCTCACGCA 59.667 55.556 0.00 0.00 46.24 5.24
2008 2013 2.737180 ACGCAGGTGACCAGACAG 59.263 61.111 3.63 0.00 0.00 3.51
2009 2014 2.047844 CGCAGGTGACCAGACAGG 60.048 66.667 3.63 0.00 45.67 4.00
2010 2015 2.359230 GCAGGTGACCAGACAGGC 60.359 66.667 3.63 0.00 43.14 4.85
2011 2016 2.348998 CAGGTGACCAGACAGGCC 59.651 66.667 3.63 0.00 43.14 5.19
2012 2017 3.314331 AGGTGACCAGACAGGCCG 61.314 66.667 3.63 0.00 43.14 6.13
2013 2018 3.626924 GGTGACCAGACAGGCCGT 61.627 66.667 0.00 0.00 43.14 5.68
2014 2019 2.048127 GTGACCAGACAGGCCGTC 60.048 66.667 16.80 16.80 45.77 4.79
2023 2028 2.357517 CAGGCCGTCTGGTGTGTC 60.358 66.667 0.00 0.00 39.76 3.67
2024 2029 2.524394 AGGCCGTCTGGTGTGTCT 60.524 61.111 0.00 0.00 37.67 3.41
2025 2030 2.357517 GGCCGTCTGGTGTGTCTG 60.358 66.667 0.00 0.00 37.67 3.51
2026 2031 2.734591 GCCGTCTGGTGTGTCTGA 59.265 61.111 0.00 0.00 37.67 3.27
2027 2032 1.293498 GCCGTCTGGTGTGTCTGAT 59.707 57.895 0.00 0.00 37.67 2.90
2028 2033 1.016130 GCCGTCTGGTGTGTCTGATG 61.016 60.000 0.00 0.00 37.67 3.07
2029 2034 0.390340 CCGTCTGGTGTGTCTGATGG 60.390 60.000 0.00 0.00 36.12 3.51
2044 2049 3.164977 TGGACACCCAGACGCCAA 61.165 61.111 0.00 0.00 37.58 4.52
2049 2054 2.847234 ACCCAGACGCCAAGGTCA 60.847 61.111 0.00 0.00 39.42 4.02
2099 2222 4.767255 GTCCCTGGCGTCTGGCTG 62.767 72.222 7.54 0.00 42.94 4.85
2163 2404 2.351276 GGACACCCAGACGCCAAT 59.649 61.111 0.00 0.00 0.00 3.16
2259 2500 2.357517 CAGGCCGTCTGGTGTGTC 60.358 66.667 0.00 0.00 39.76 3.67
2260 2501 2.524394 AGGCCGTCTGGTGTGTCT 60.524 61.111 0.00 0.00 37.67 3.41
2261 2502 2.357517 GGCCGTCTGGTGTGTCTG 60.358 66.667 0.00 0.00 37.67 3.51
2262 2503 2.734591 GCCGTCTGGTGTGTCTGA 59.265 61.111 0.00 0.00 37.67 3.27
2263 2504 1.293498 GCCGTCTGGTGTGTCTGAT 59.707 57.895 0.00 0.00 37.67 2.90
2264 2505 1.016130 GCCGTCTGGTGTGTCTGATG 61.016 60.000 0.00 0.00 37.67 3.07
2265 2506 0.390340 CCGTCTGGTGTGTCTGATGG 60.390 60.000 0.00 0.00 36.12 3.51
2266 2507 0.603065 CGTCTGGTGTGTCTGATGGA 59.397 55.000 0.00 0.00 0.00 3.41
2267 2508 1.670087 CGTCTGGTGTGTCTGATGGAC 60.670 57.143 0.00 0.00 44.70 4.02
2280 2521 3.164977 TGGACACCCAGACGCCAA 61.165 61.111 0.00 0.00 37.58 4.52
2281 2522 2.358737 GGACACCCAGACGCCAAG 60.359 66.667 0.00 0.00 0.00 3.61
2282 2523 2.358737 GACACCCAGACGCCAAGG 60.359 66.667 0.00 0.00 0.00 3.61
2283 2524 3.168528 ACACCCAGACGCCAAGGT 61.169 61.111 0.00 0.00 0.00 3.50
2284 2525 2.358737 CACCCAGACGCCAAGGTC 60.359 66.667 0.00 0.00 37.19 3.85
2285 2526 3.637273 ACCCAGACGCCAAGGTCC 61.637 66.667 0.00 0.00 37.66 4.46
2286 2527 4.410400 CCCAGACGCCAAGGTCCC 62.410 72.222 0.00 0.00 37.66 4.46
2287 2528 3.322466 CCAGACGCCAAGGTCCCT 61.322 66.667 0.00 0.00 37.66 4.20
2288 2529 2.046892 CAGACGCCAAGGTCCCTG 60.047 66.667 0.00 0.00 37.66 4.45
2289 2530 3.322466 AGACGCCAAGGTCCCTGG 61.322 66.667 1.59 1.59 37.66 4.45
2294 2535 3.322466 CCAAGGTCCCTGGCGTCT 61.322 66.667 0.00 0.00 0.00 4.18
2295 2536 2.046892 CAAGGTCCCTGGCGTCTG 60.047 66.667 0.00 0.00 0.00 3.51
2296 2537 4.021925 AAGGTCCCTGGCGTCTGC 62.022 66.667 0.00 0.00 41.71 4.26
2309 2550 4.388465 TCTGCCTCCCAGATCCAG 57.612 61.111 0.00 0.00 45.44 3.86
2310 2551 1.705950 TCTGCCTCCCAGATCCAGA 59.294 57.895 0.00 0.00 45.44 3.86
2311 2552 0.398239 TCTGCCTCCCAGATCCAGAG 60.398 60.000 0.00 0.00 45.44 3.35
2312 2553 3.791082 TCTGCCTCCCAGATCCAGAGG 62.791 61.905 15.69 15.69 45.44 3.69
2313 2554 3.560989 CCTCCCAGATCCAGAGGC 58.439 66.667 9.63 0.00 40.75 4.70
2314 2555 2.146061 CCTCCCAGATCCAGAGGCC 61.146 68.421 9.63 0.00 40.75 5.19
2315 2556 1.383664 CTCCCAGATCCAGAGGCCA 60.384 63.158 5.01 0.00 0.00 5.36
2316 2557 1.383664 TCCCAGATCCAGAGGCCAG 60.384 63.158 5.01 0.00 0.00 4.85
2317 2558 2.450320 CCCAGATCCAGAGGCCAGG 61.450 68.421 5.01 3.60 0.00 4.45
2318 2559 2.450320 CCAGATCCAGAGGCCAGGG 61.450 68.421 5.01 2.68 0.00 4.45
2319 2560 1.692042 CAGATCCAGAGGCCAGGGT 60.692 63.158 5.01 0.00 0.00 4.34
2320 2561 1.383803 AGATCCAGAGGCCAGGGTC 60.384 63.158 5.01 9.98 35.19 4.46
2321 2562 2.367512 ATCCAGAGGCCAGGGTCC 60.368 66.667 5.01 0.00 0.00 4.46
2322 2563 4.741239 TCCAGAGGCCAGGGTCCC 62.741 72.222 5.01 0.00 0.00 4.46
2323 2564 4.748798 CCAGAGGCCAGGGTCCCT 62.749 72.222 3.85 3.85 0.00 4.20
2335 2576 4.021925 GTCCCTGGCGTCTGGCTT 62.022 66.667 7.54 0.00 42.94 4.35
2336 2577 4.020617 TCCCTGGCGTCTGGCTTG 62.021 66.667 7.54 0.00 42.94 4.01
2338 2579 4.711949 CCTGGCGTCTGGCTTGCT 62.712 66.667 0.00 0.00 42.94 3.91
2339 2580 2.670934 CTGGCGTCTGGCTTGCTT 60.671 61.111 0.00 0.00 42.94 3.91
2340 2581 2.203337 TGGCGTCTGGCTTGCTTT 60.203 55.556 0.00 0.00 42.94 3.51
2341 2582 2.256461 GGCGTCTGGCTTGCTTTG 59.744 61.111 0.00 0.00 42.94 2.77
2342 2583 2.429739 GCGTCTGGCTTGCTTTGC 60.430 61.111 0.00 0.00 39.11 3.68
2343 2584 2.912624 GCGTCTGGCTTGCTTTGCT 61.913 57.895 0.00 0.00 39.11 3.91
2344 2585 1.208614 CGTCTGGCTTGCTTTGCTC 59.791 57.895 0.00 0.00 0.00 4.26
2345 2586 1.208614 GTCTGGCTTGCTTTGCTCG 59.791 57.895 0.00 0.00 0.00 5.03
2346 2587 2.126580 CTGGCTTGCTTTGCTCGC 60.127 61.111 0.00 0.00 0.00 5.03
2347 2588 3.940975 CTGGCTTGCTTTGCTCGCG 62.941 63.158 0.00 0.00 0.00 5.87
2349 2590 4.688419 GCTTGCTTTGCTCGCGCA 62.688 61.111 8.75 0.00 46.24 6.09
2359 2600 4.056125 CTCGCGCAGGTGACCAGA 62.056 66.667 8.75 0.00 0.00 3.86
2360 2601 4.357947 TCGCGCAGGTGACCAGAC 62.358 66.667 8.75 0.00 0.00 3.51
2361 2602 4.662961 CGCGCAGGTGACCAGACA 62.663 66.667 8.75 0.00 0.00 3.41
2362 2603 2.740055 GCGCAGGTGACCAGACAG 60.740 66.667 3.63 0.00 0.00 3.51
2363 2604 2.047844 CGCAGGTGACCAGACAGG 60.048 66.667 3.63 0.00 45.67 4.00
2364 2605 2.359230 GCAGGTGACCAGACAGGC 60.359 66.667 3.63 0.00 43.14 4.85
2365 2606 2.888447 GCAGGTGACCAGACAGGCT 61.888 63.158 3.63 0.00 43.14 4.58
2366 2607 1.004080 CAGGTGACCAGACAGGCTG 60.004 63.158 14.16 14.16 43.14 4.85
2367 2608 1.460305 AGGTGACCAGACAGGCTGT 60.460 57.895 22.26 22.26 43.33 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
316 318 6.780031 TGATTGGTCCAAGAAAGGTTGAAATA 59.220 34.615 10.72 0.00 0.00 1.40
491 493 4.492646 TGATAATGTCAGGAGCCTCCATA 58.507 43.478 14.46 0.00 39.61 2.74
1809 1814 6.030228 GCATGCTACTCTCAACCAAAAATAC 58.970 40.000 11.37 0.00 0.00 1.89
1935 1940 2.107953 GATCTGGGAGGCAGACGC 59.892 66.667 0.00 0.00 37.44 5.19
1936 1941 2.025767 CTGGATCTGGGAGGCAGACG 62.026 65.000 0.00 0.00 0.00 4.18
1937 1942 0.689080 TCTGGATCTGGGAGGCAGAC 60.689 60.000 0.00 0.00 0.00 3.51
1938 1943 0.689080 GTCTGGATCTGGGAGGCAGA 60.689 60.000 0.00 0.00 0.00 4.26
1939 1944 1.828768 GTCTGGATCTGGGAGGCAG 59.171 63.158 0.00 0.00 0.00 4.85
1940 1945 2.060383 CGTCTGGATCTGGGAGGCA 61.060 63.158 0.00 0.00 0.00 4.75
1941 1946 2.818132 CGTCTGGATCTGGGAGGC 59.182 66.667 0.00 0.00 0.00 4.70
1942 1947 2.801631 GGCGTCTGGATCTGGGAGG 61.802 68.421 0.00 0.00 0.00 4.30
1943 1948 2.025767 CTGGCGTCTGGATCTGGGAG 62.026 65.000 0.00 0.00 0.00 4.30
1944 1949 2.038813 TGGCGTCTGGATCTGGGA 59.961 61.111 0.00 0.00 0.00 4.37
1945 1950 2.503061 CTGGCGTCTGGATCTGGG 59.497 66.667 0.00 0.00 0.00 4.45
1946 1951 2.503061 CCTGGCGTCTGGATCTGG 59.497 66.667 7.22 0.00 34.32 3.86
1947 1952 2.303549 GACCCTGGCGTCTGGATCTG 62.304 65.000 15.35 0.00 34.32 2.90
1948 1953 2.039624 ACCCTGGCGTCTGGATCT 59.960 61.111 15.35 0.00 34.32 2.75
1949 1954 2.501610 GACCCTGGCGTCTGGATC 59.498 66.667 15.35 2.20 34.32 3.36
1950 1955 3.083997 GGACCCTGGCGTCTGGAT 61.084 66.667 15.35 0.00 34.32 3.41
1964 1969 4.021925 AAGCCAGACGCCAGGGAC 62.022 66.667 0.00 0.00 38.78 4.46
1965 1970 4.020617 CAAGCCAGACGCCAGGGA 62.021 66.667 0.00 0.00 38.78 4.20
1967 1972 4.711949 AGCAAGCCAGACGCCAGG 62.712 66.667 0.00 0.00 38.78 4.45
1968 1973 2.263741 AAAGCAAGCCAGACGCCAG 61.264 57.895 0.00 0.00 38.78 4.85
1969 1974 2.203337 AAAGCAAGCCAGACGCCA 60.203 55.556 0.00 0.00 38.78 5.69
1970 1975 2.256461 CAAAGCAAGCCAGACGCC 59.744 61.111 0.00 0.00 38.78 5.68
1971 1976 2.429739 GCAAAGCAAGCCAGACGC 60.430 61.111 0.00 0.00 37.98 5.19
1972 1977 1.208614 GAGCAAAGCAAGCCAGACG 59.791 57.895 0.00 0.00 0.00 4.18
1973 1978 0.039708 GTGAGCAAAGCAAGCCAGAC 60.040 55.000 0.00 0.00 0.00 3.51
1974 1979 1.509644 CGTGAGCAAAGCAAGCCAGA 61.510 55.000 0.00 0.00 0.00 3.86
1975 1980 1.081641 CGTGAGCAAAGCAAGCCAG 60.082 57.895 0.00 0.00 0.00 4.85
1976 1981 3.033184 CGTGAGCAAAGCAAGCCA 58.967 55.556 0.00 0.00 0.00 4.75
1989 1994 2.087462 CTGTCTGGTCACCTGCGTGA 62.087 60.000 0.00 0.00 46.91 4.35
1990 1995 1.665916 CTGTCTGGTCACCTGCGTG 60.666 63.158 0.00 0.00 41.72 5.34
1991 1996 2.737180 CTGTCTGGTCACCTGCGT 59.263 61.111 0.00 0.00 0.00 5.24
1992 1997 2.047844 CCTGTCTGGTCACCTGCG 60.048 66.667 0.00 0.00 0.00 5.18
1993 1998 2.359230 GCCTGTCTGGTCACCTGC 60.359 66.667 0.00 0.00 38.35 4.85
1994 1999 2.348998 GGCCTGTCTGGTCACCTG 59.651 66.667 0.00 0.00 40.97 4.00
1995 2000 3.314331 CGGCCTGTCTGGTCACCT 61.314 66.667 0.00 0.00 41.50 4.00
1996 2001 3.591254 GACGGCCTGTCTGGTCACC 62.591 68.421 17.12 0.00 44.58 4.02
1997 2002 2.048127 GACGGCCTGTCTGGTCAC 60.048 66.667 17.12 0.00 44.58 3.67
2005 2010 3.161450 ACACACCAGACGGCCTGT 61.161 61.111 0.00 0.00 41.33 4.00
2006 2011 2.357517 GACACACCAGACGGCCTG 60.358 66.667 0.00 0.00 42.55 4.85
2007 2012 2.524394 AGACACACCAGACGGCCT 60.524 61.111 0.00 0.00 34.57 5.19
2008 2013 2.172483 ATCAGACACACCAGACGGCC 62.172 60.000 0.00 0.00 34.57 6.13
2009 2014 1.016130 CATCAGACACACCAGACGGC 61.016 60.000 0.00 0.00 34.57 5.68
2010 2015 0.390340 CCATCAGACACACCAGACGG 60.390 60.000 0.00 0.00 38.77 4.79
2011 2016 0.603065 TCCATCAGACACACCAGACG 59.397 55.000 0.00 0.00 0.00 4.18
2012 2017 2.086054 GTCCATCAGACACACCAGAC 57.914 55.000 0.00 0.00 45.55 3.51
2021 2026 3.842869 GTCTGGGTGTCCATCAGAC 57.157 57.895 13.81 13.81 46.66 3.51
2022 2027 1.888436 GCGTCTGGGTGTCCATCAGA 61.888 60.000 0.00 0.00 43.11 3.27
2023 2028 1.448540 GCGTCTGGGTGTCCATCAG 60.449 63.158 0.00 0.00 43.11 2.90
2024 2029 2.662596 GCGTCTGGGTGTCCATCA 59.337 61.111 0.00 0.00 43.11 3.07
2025 2030 2.125106 GGCGTCTGGGTGTCCATC 60.125 66.667 0.00 0.00 43.11 3.51
2026 2031 2.469465 CTTGGCGTCTGGGTGTCCAT 62.469 60.000 0.00 0.00 43.11 3.41
2027 2032 3.164977 TTGGCGTCTGGGTGTCCA 61.165 61.111 0.00 0.00 41.58 4.02
2028 2033 2.358737 CTTGGCGTCTGGGTGTCC 60.359 66.667 0.00 0.00 0.00 4.02
2029 2034 2.358737 CCTTGGCGTCTGGGTGTC 60.359 66.667 0.00 0.00 0.00 3.67
2257 2498 3.842869 GTCTGGGTGTCCATCAGAC 57.157 57.895 13.81 13.81 46.66 3.51
2258 2499 1.888436 GCGTCTGGGTGTCCATCAGA 61.888 60.000 0.00 0.00 43.11 3.27
2259 2500 1.448540 GCGTCTGGGTGTCCATCAG 60.449 63.158 0.00 0.00 43.11 2.90
2260 2501 2.662596 GCGTCTGGGTGTCCATCA 59.337 61.111 0.00 0.00 43.11 3.07
2261 2502 2.125106 GGCGTCTGGGTGTCCATC 60.125 66.667 0.00 0.00 43.11 3.51
2262 2503 2.469465 CTTGGCGTCTGGGTGTCCAT 62.469 60.000 0.00 0.00 43.11 3.41
2263 2504 3.164977 TTGGCGTCTGGGTGTCCA 61.165 61.111 0.00 0.00 41.58 4.02
2264 2505 2.358737 CTTGGCGTCTGGGTGTCC 60.359 66.667 0.00 0.00 0.00 4.02
2265 2506 2.358737 CCTTGGCGTCTGGGTGTC 60.359 66.667 0.00 0.00 0.00 3.67
2266 2507 3.168528 ACCTTGGCGTCTGGGTGT 61.169 61.111 3.86 0.00 0.00 4.16
2267 2508 2.358737 GACCTTGGCGTCTGGGTG 60.359 66.667 9.02 0.00 31.60 4.61
2268 2509 3.637273 GGACCTTGGCGTCTGGGT 61.637 66.667 4.30 4.30 33.07 4.51
2269 2510 4.410400 GGGACCTTGGCGTCTGGG 62.410 72.222 4.80 1.36 33.07 4.45
2270 2511 3.322466 AGGGACCTTGGCGTCTGG 61.322 66.667 0.00 0.00 33.07 3.86
2271 2512 2.046892 CAGGGACCTTGGCGTCTG 60.047 66.667 0.00 0.00 33.07 3.51
2272 2513 3.322466 CCAGGGACCTTGGCGTCT 61.322 66.667 10.14 0.00 33.07 4.18
2277 2518 3.322466 AGACGCCAGGGACCTTGG 61.322 66.667 18.34 18.34 0.00 3.61
2278 2519 2.046892 CAGACGCCAGGGACCTTG 60.047 66.667 0.00 0.00 0.00 3.61
2279 2520 4.021925 GCAGACGCCAGGGACCTT 62.022 66.667 0.00 0.00 0.00 3.50
2289 2530 2.107953 GATCTGGGAGGCAGACGC 59.892 66.667 0.00 0.00 37.44 5.19
2290 2531 2.025767 CTGGATCTGGGAGGCAGACG 62.026 65.000 0.00 0.00 0.00 4.18
2291 2532 0.689080 TCTGGATCTGGGAGGCAGAC 60.689 60.000 0.00 0.00 0.00 3.51
2292 2533 0.398239 CTCTGGATCTGGGAGGCAGA 60.398 60.000 0.00 0.00 0.00 4.26
2293 2534 1.409251 CCTCTGGATCTGGGAGGCAG 61.409 65.000 13.23 2.42 39.87 4.85
2294 2535 1.383664 CCTCTGGATCTGGGAGGCA 60.384 63.158 13.23 0.00 39.87 4.75
2295 2536 3.560989 CCTCTGGATCTGGGAGGC 58.439 66.667 13.23 0.00 39.87 4.70
2296 2537 2.146061 GGCCTCTGGATCTGGGAGG 61.146 68.421 18.19 18.19 46.65 4.30
2297 2538 1.383664 TGGCCTCTGGATCTGGGAG 60.384 63.158 3.32 0.00 0.00 4.30
2298 2539 1.383664 CTGGCCTCTGGATCTGGGA 60.384 63.158 3.32 0.00 0.00 4.37
2299 2540 2.450320 CCTGGCCTCTGGATCTGGG 61.450 68.421 3.32 0.00 34.32 4.45
2300 2541 2.450320 CCCTGGCCTCTGGATCTGG 61.450 68.421 3.32 0.00 34.32 3.86
2301 2542 1.692042 ACCCTGGCCTCTGGATCTG 60.692 63.158 3.32 0.00 34.32 2.90
2302 2543 1.383803 GACCCTGGCCTCTGGATCT 60.384 63.158 3.32 0.00 34.32 2.75
2303 2544 2.447714 GGACCCTGGCCTCTGGATC 61.448 68.421 3.32 0.00 34.32 3.36
2304 2545 2.367512 GGACCCTGGCCTCTGGAT 60.368 66.667 3.32 0.00 34.32 3.41
2305 2546 4.741239 GGGACCCTGGCCTCTGGA 62.741 72.222 3.32 0.00 34.32 3.86
2306 2547 4.748798 AGGGACCCTGGCCTCTGG 62.749 72.222 13.95 4.02 29.57 3.86
2318 2559 4.021925 AAGCCAGACGCCAGGGAC 62.022 66.667 0.00 0.00 38.78 4.46
2319 2560 4.020617 CAAGCCAGACGCCAGGGA 62.021 66.667 0.00 0.00 38.78 4.20
2321 2562 4.711949 AGCAAGCCAGACGCCAGG 62.712 66.667 0.00 0.00 38.78 4.45
2322 2563 2.263741 AAAGCAAGCCAGACGCCAG 61.264 57.895 0.00 0.00 38.78 4.85
2323 2564 2.203337 AAAGCAAGCCAGACGCCA 60.203 55.556 0.00 0.00 38.78 5.69
2324 2565 2.256461 CAAAGCAAGCCAGACGCC 59.744 61.111 0.00 0.00 38.78 5.68
2325 2566 2.429739 GCAAAGCAAGCCAGACGC 60.430 61.111 0.00 0.00 37.98 5.19
2326 2567 1.208614 GAGCAAAGCAAGCCAGACG 59.791 57.895 0.00 0.00 0.00 4.18
2327 2568 1.208614 CGAGCAAAGCAAGCCAGAC 59.791 57.895 0.00 0.00 0.00 3.51
2328 2569 2.620112 GCGAGCAAAGCAAGCCAGA 61.620 57.895 0.00 0.00 34.19 3.86
2329 2570 2.126580 GCGAGCAAAGCAAGCCAG 60.127 61.111 0.00 0.00 34.19 4.85
2330 2571 4.029186 CGCGAGCAAAGCAAGCCA 62.029 61.111 0.00 0.00 31.68 4.75
2342 2583 4.056125 TCTGGTCACCTGCGCGAG 62.056 66.667 12.10 4.18 0.00 5.03
2343 2584 4.357947 GTCTGGTCACCTGCGCGA 62.358 66.667 12.10 0.00 0.00 5.87
2344 2585 4.662961 TGTCTGGTCACCTGCGCG 62.663 66.667 0.00 0.00 0.00 6.86
2345 2586 2.740055 CTGTCTGGTCACCTGCGC 60.740 66.667 0.00 0.00 0.00 6.09
2346 2587 2.047844 CCTGTCTGGTCACCTGCG 60.048 66.667 0.00 0.00 0.00 5.18
2347 2588 2.359230 GCCTGTCTGGTCACCTGC 60.359 66.667 0.00 0.00 38.35 4.85
2348 2589 1.004080 CAGCCTGTCTGGTCACCTG 60.004 63.158 0.00 0.00 39.15 4.00
2349 2590 3.476386 CAGCCTGTCTGGTCACCT 58.524 61.111 0.00 0.00 39.15 4.00
2359 2600 1.050988 AGACACACCAGACAGCCTGT 61.051 55.000 0.00 0.00 41.33 4.00
2360 2601 0.602106 CAGACACACCAGACAGCCTG 60.602 60.000 0.00 0.00 42.55 4.85
2361 2602 0.760567 TCAGACACACCAGACAGCCT 60.761 55.000 0.00 0.00 0.00 4.58
2362 2603 0.322975 ATCAGACACACCAGACAGCC 59.677 55.000 0.00 0.00 0.00 4.85
2363 2604 1.436600 CATCAGACACACCAGACAGC 58.563 55.000 0.00 0.00 0.00 4.40
2364 2605 1.620323 TCCATCAGACACACCAGACAG 59.380 52.381 0.00 0.00 0.00 3.51
2365 2606 1.344438 GTCCATCAGACACACCAGACA 59.656 52.381 0.00 0.00 45.55 3.41
2366 2607 2.086054 GTCCATCAGACACACCAGAC 57.914 55.000 0.00 0.00 45.55 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.