Multiple sequence alignment - TraesCS2A01G498700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G498700 chr2A 100.000 3141 0 0 1 3141 728761162 728758022 0.000000e+00 5801
1 TraesCS2A01G498700 chr2A 92.711 343 23 2 9 349 136642990 136643332 7.830000e-136 494
2 TraesCS2A01G498700 chr2B 94.573 1603 70 6 1547 3141 721114177 721112584 0.000000e+00 2462
3 TraesCS2A01G498700 chr2B 80.164 1099 102 56 481 1497 721115257 721114193 0.000000e+00 715
4 TraesCS2A01G498700 chr2D 94.189 1411 66 6 1740 3141 594103025 594101622 0.000000e+00 2137
5 TraesCS2A01G498700 chr2D 82.007 817 59 40 439 1192 594104290 594103499 5.760000e-172 614
6 TraesCS2A01G498700 chr2D 92.128 343 23 4 9 349 539164973 539165313 6.090000e-132 481
7 TraesCS2A01G498700 chr3D 92.711 343 21 4 9 349 11326987 11327327 2.810000e-135 492
8 TraesCS2A01G498700 chr1D 92.486 346 21 4 9 351 445232577 445232234 1.010000e-134 490
9 TraesCS2A01G498700 chr1D 92.151 344 24 3 9 349 415524494 415524151 1.690000e-132 483
10 TraesCS2A01G498700 chr1D 92.105 342 26 1 9 349 435165376 435165717 6.090000e-132 481
11 TraesCS2A01G498700 chr4D 91.908 346 26 2 9 352 35124055 35123710 1.690000e-132 483
12 TraesCS2A01G498700 chr7D 92.128 343 24 3 9 348 56285775 56285433 6.090000e-132 481
13 TraesCS2A01G498700 chr7D 91.837 343 26 2 9 350 104758397 104758738 7.880000e-131 477


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G498700 chr2A 728758022 728761162 3140 True 5801.0 5801 100.0000 1 3141 1 chr2A.!!$R1 3140
1 TraesCS2A01G498700 chr2B 721112584 721115257 2673 True 1588.5 2462 87.3685 481 3141 2 chr2B.!!$R1 2660
2 TraesCS2A01G498700 chr2D 594101622 594104290 2668 True 1375.5 2137 88.0980 439 3141 2 chr2D.!!$R1 2702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.037605 AACGAACATGGACGAGGGTC 60.038 55.0 17.79 0.0 42.66 4.46 F
87 88 0.108138 GAACATGGACGAGGGTCTGG 60.108 60.0 0.00 0.0 42.97 3.86 F
160 161 0.172803 GAGGTACGAGGCATGACGTT 59.827 55.0 15.47 0.0 42.61 3.99 F
183 184 0.249741 GGCGTGTGGGCGTTATCTAT 60.250 55.0 0.00 0.0 0.00 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1855 2020 0.030369 AACCGTCACTCGTCAGTCAC 59.970 55.000 0.00 0.0 37.94 3.67 R
1928 2093 1.608590 CAGTCGGTTGCCAGAAACAAT 59.391 47.619 0.00 0.0 0.00 2.71 R
1998 2163 1.664321 CTCGTGGGAAGGACCGGTAG 61.664 65.000 7.34 0.0 40.11 3.18 R
2304 2477 1.554160 AGATCTGCTGTCAACTCTGGG 59.446 52.381 0.00 0.0 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.743636 ACTGTAGTTGTCCGACATGG 57.256 50.000 1.09 0.00 40.09 3.66
31 32 1.337823 ACTGTAGTTGTCCGACATGGC 60.338 52.381 1.09 0.00 37.80 4.40
32 33 0.682292 TGTAGTTGTCCGACATGGCA 59.318 50.000 1.09 0.00 37.80 4.92
33 34 1.070914 TGTAGTTGTCCGACATGGCAA 59.929 47.619 1.09 0.00 37.80 4.52
34 35 1.463444 GTAGTTGTCCGACATGGCAAC 59.537 52.381 1.09 5.44 46.38 4.17
35 36 0.889186 AGTTGTCCGACATGGCAACC 60.889 55.000 1.09 0.00 46.81 3.77
36 37 1.963855 TTGTCCGACATGGCAACCG 60.964 57.895 1.09 0.00 37.80 4.44
37 38 2.047655 GTCCGACATGGCAACCGA 60.048 61.111 0.00 0.00 37.80 4.69
38 39 1.669760 GTCCGACATGGCAACCGAA 60.670 57.895 0.00 0.00 37.80 4.30
39 40 1.375396 TCCGACATGGCAACCGAAG 60.375 57.895 0.00 0.00 37.80 3.79
40 41 1.671054 CCGACATGGCAACCGAAGT 60.671 57.895 0.00 0.00 0.00 3.01
41 42 1.234615 CCGACATGGCAACCGAAGTT 61.235 55.000 0.00 0.00 36.33 2.66
42 43 0.165944 CGACATGGCAACCGAAGTTC 59.834 55.000 0.00 0.00 32.45 3.01
43 44 1.234821 GACATGGCAACCGAAGTTCA 58.765 50.000 3.32 0.00 32.45 3.18
44 45 1.197721 GACATGGCAACCGAAGTTCAG 59.802 52.381 3.32 0.00 32.45 3.02
45 46 0.109597 CATGGCAACCGAAGTTCAGC 60.110 55.000 3.32 1.20 32.45 4.26
46 47 1.577328 ATGGCAACCGAAGTTCAGCG 61.577 55.000 3.32 0.00 32.45 5.18
47 48 1.959226 GGCAACCGAAGTTCAGCGA 60.959 57.895 3.32 0.00 32.45 4.93
48 49 1.204312 GCAACCGAAGTTCAGCGAC 59.796 57.895 3.32 0.00 32.45 5.19
49 50 1.495584 GCAACCGAAGTTCAGCGACA 61.496 55.000 3.32 0.00 32.45 4.35
50 51 1.148310 CAACCGAAGTTCAGCGACAT 58.852 50.000 3.32 0.00 32.45 3.06
51 52 1.136252 CAACCGAAGTTCAGCGACATG 60.136 52.381 3.32 0.00 32.45 3.21
52 53 0.317160 ACCGAAGTTCAGCGACATGA 59.683 50.000 0.00 0.00 0.00 3.07
53 54 0.716108 CCGAAGTTCAGCGACATGAC 59.284 55.000 0.00 0.00 0.00 3.06
54 55 1.418373 CGAAGTTCAGCGACATGACA 58.582 50.000 0.00 0.00 0.00 3.58
55 56 1.792367 CGAAGTTCAGCGACATGACAA 59.208 47.619 0.00 0.00 0.00 3.18
56 57 2.410262 CGAAGTTCAGCGACATGACAAC 60.410 50.000 0.00 0.00 0.00 3.32
57 58 2.533266 AGTTCAGCGACATGACAACT 57.467 45.000 0.00 0.00 0.00 3.16
58 59 3.660501 AGTTCAGCGACATGACAACTA 57.339 42.857 0.00 0.00 0.00 2.24
59 60 3.318017 AGTTCAGCGACATGACAACTAC 58.682 45.455 0.00 0.00 0.00 2.73
60 61 3.057019 GTTCAGCGACATGACAACTACA 58.943 45.455 0.00 0.00 0.00 2.74
61 62 2.946564 TCAGCGACATGACAACTACAG 58.053 47.619 0.00 0.00 0.00 2.74
62 63 2.296190 TCAGCGACATGACAACTACAGT 59.704 45.455 0.00 0.00 0.00 3.55
63 64 3.059884 CAGCGACATGACAACTACAGTT 58.940 45.455 0.00 0.00 39.12 3.16
64 65 4.022676 TCAGCGACATGACAACTACAGTTA 60.023 41.667 0.00 0.00 36.32 2.24
65 66 4.684242 CAGCGACATGACAACTACAGTTAA 59.316 41.667 0.00 0.00 36.32 2.01
66 67 5.176774 CAGCGACATGACAACTACAGTTAAA 59.823 40.000 0.00 0.00 36.32 1.52
67 68 5.176958 AGCGACATGACAACTACAGTTAAAC 59.823 40.000 0.00 0.00 36.32 2.01
68 69 5.595993 CGACATGACAACTACAGTTAAACG 58.404 41.667 0.00 0.00 36.32 3.60
69 70 5.400188 CGACATGACAACTACAGTTAAACGA 59.600 40.000 0.00 0.00 36.32 3.85
70 71 6.074729 CGACATGACAACTACAGTTAAACGAA 60.075 38.462 0.00 0.00 36.32 3.85
71 72 6.940714 ACATGACAACTACAGTTAAACGAAC 58.059 36.000 0.00 0.00 36.32 3.95
72 73 6.535865 ACATGACAACTACAGTTAAACGAACA 59.464 34.615 0.00 0.00 40.86 3.18
73 74 7.225931 ACATGACAACTACAGTTAAACGAACAT 59.774 33.333 0.00 0.00 40.86 2.71
74 75 6.939627 TGACAACTACAGTTAAACGAACATG 58.060 36.000 0.00 0.00 40.86 3.21
75 76 6.018588 TGACAACTACAGTTAAACGAACATGG 60.019 38.462 0.00 0.00 40.86 3.66
76 77 6.050432 ACAACTACAGTTAAACGAACATGGA 58.950 36.000 0.00 0.00 40.86 3.41
77 78 6.018507 ACAACTACAGTTAAACGAACATGGAC 60.019 38.462 0.00 0.00 40.86 4.02
78 79 4.682860 ACTACAGTTAAACGAACATGGACG 59.317 41.667 11.17 11.17 40.86 4.79
79 80 3.719924 ACAGTTAAACGAACATGGACGA 58.280 40.909 17.79 0.00 40.86 4.20
80 81 3.739300 ACAGTTAAACGAACATGGACGAG 59.261 43.478 17.79 0.00 40.86 4.18
81 82 3.122948 CAGTTAAACGAACATGGACGAGG 59.877 47.826 17.79 0.00 40.86 4.63
82 83 2.373540 TAAACGAACATGGACGAGGG 57.626 50.000 17.79 0.00 0.00 4.30
83 84 0.395312 AAACGAACATGGACGAGGGT 59.605 50.000 17.79 0.00 0.00 4.34
84 85 0.037605 AACGAACATGGACGAGGGTC 60.038 55.000 17.79 0.00 42.66 4.46
85 86 0.898789 ACGAACATGGACGAGGGTCT 60.899 55.000 17.79 0.00 42.97 3.85
86 87 0.458543 CGAACATGGACGAGGGTCTG 60.459 60.000 7.81 0.00 42.97 3.51
87 88 0.108138 GAACATGGACGAGGGTCTGG 60.108 60.000 0.00 0.00 42.97 3.86
88 89 0.544357 AACATGGACGAGGGTCTGGA 60.544 55.000 0.00 0.00 42.97 3.86
89 90 1.258445 ACATGGACGAGGGTCTGGAC 61.258 60.000 0.00 0.00 42.97 4.02
100 101 2.559785 GTCTGGACCATGGCAACTG 58.440 57.895 13.04 6.56 37.61 3.16
101 102 1.303561 TCTGGACCATGGCAACTGC 60.304 57.895 13.04 0.00 41.14 4.40
102 103 2.672651 TGGACCATGGCAACTGCG 60.673 61.111 13.04 0.00 43.26 5.18
103 104 3.443045 GGACCATGGCAACTGCGG 61.443 66.667 13.04 0.00 43.26 5.69
104 105 3.443045 GACCATGGCAACTGCGGG 61.443 66.667 13.04 0.28 43.26 6.13
105 106 3.918253 GACCATGGCAACTGCGGGA 62.918 63.158 13.04 0.00 43.26 5.14
106 107 3.443045 CCATGGCAACTGCGGGAC 61.443 66.667 0.00 0.00 43.26 4.46
121 122 4.994201 GACGCGCGGTGACTGTCA 62.994 66.667 35.22 6.36 0.00 3.58
154 155 3.207354 CCACGAGGTACGAGGCAT 58.793 61.111 0.00 0.00 44.49 4.40
155 156 1.226974 CCACGAGGTACGAGGCATG 60.227 63.158 0.00 0.00 44.49 4.06
156 157 1.663379 CCACGAGGTACGAGGCATGA 61.663 60.000 0.00 0.00 44.49 3.07
157 158 0.525668 CACGAGGTACGAGGCATGAC 60.526 60.000 0.00 0.00 45.77 3.06
158 159 1.298413 CGAGGTACGAGGCATGACG 60.298 63.158 0.00 0.99 45.77 4.35
159 160 1.807886 GAGGTACGAGGCATGACGT 59.192 57.895 14.86 14.86 44.72 4.34
160 161 0.172803 GAGGTACGAGGCATGACGTT 59.827 55.000 15.47 0.00 42.61 3.99
161 162 0.172803 AGGTACGAGGCATGACGTTC 59.827 55.000 15.47 11.50 42.61 3.95
162 163 1.138047 GGTACGAGGCATGACGTTCG 61.138 60.000 8.56 8.56 42.61 3.95
163 164 1.138036 TACGAGGCATGACGTTCGG 59.862 57.895 14.06 0.00 42.61 4.30
164 165 2.274232 TACGAGGCATGACGTTCGGG 62.274 60.000 14.06 0.00 42.61 5.14
165 166 2.511600 GAGGCATGACGTTCGGGG 60.512 66.667 0.00 0.00 0.00 5.73
166 167 4.778143 AGGCATGACGTTCGGGGC 62.778 66.667 0.00 0.00 0.00 5.80
169 170 3.487202 CATGACGTTCGGGGCGTG 61.487 66.667 4.76 0.00 43.04 5.34
170 171 3.998672 ATGACGTTCGGGGCGTGT 61.999 61.111 4.76 0.00 43.04 4.49
171 172 4.953868 TGACGTTCGGGGCGTGTG 62.954 66.667 4.76 0.00 43.04 3.82
179 180 4.789123 GGGGCGTGTGGGCGTTAT 62.789 66.667 0.00 0.00 43.46 1.89
180 181 3.199891 GGGCGTGTGGGCGTTATC 61.200 66.667 0.00 0.00 43.46 1.75
181 182 2.125269 GGCGTGTGGGCGTTATCT 60.125 61.111 0.00 0.00 0.00 1.98
182 183 1.142314 GGCGTGTGGGCGTTATCTA 59.858 57.895 0.00 0.00 0.00 1.98
183 184 0.249741 GGCGTGTGGGCGTTATCTAT 60.250 55.000 0.00 0.00 0.00 1.98
184 185 1.578583 GCGTGTGGGCGTTATCTATT 58.421 50.000 0.00 0.00 0.00 1.73
185 186 1.937899 GCGTGTGGGCGTTATCTATTT 59.062 47.619 0.00 0.00 0.00 1.40
186 187 2.033151 GCGTGTGGGCGTTATCTATTTC 60.033 50.000 0.00 0.00 0.00 2.17
187 188 3.191669 CGTGTGGGCGTTATCTATTTCA 58.808 45.455 0.00 0.00 0.00 2.69
188 189 3.807622 CGTGTGGGCGTTATCTATTTCAT 59.192 43.478 0.00 0.00 0.00 2.57
189 190 4.084537 CGTGTGGGCGTTATCTATTTCATC 60.085 45.833 0.00 0.00 0.00 2.92
190 191 4.213482 GTGTGGGCGTTATCTATTTCATCC 59.787 45.833 0.00 0.00 0.00 3.51
191 192 4.141597 TGTGGGCGTTATCTATTTCATCCA 60.142 41.667 0.00 0.00 0.00 3.41
192 193 4.213482 GTGGGCGTTATCTATTTCATCCAC 59.787 45.833 0.00 0.00 34.97 4.02
193 194 4.141597 TGGGCGTTATCTATTTCATCCACA 60.142 41.667 0.00 0.00 0.00 4.17
194 195 4.213482 GGGCGTTATCTATTTCATCCACAC 59.787 45.833 0.00 0.00 0.00 3.82
195 196 4.814234 GGCGTTATCTATTTCATCCACACA 59.186 41.667 0.00 0.00 0.00 3.72
196 197 5.277345 GGCGTTATCTATTTCATCCACACAC 60.277 44.000 0.00 0.00 0.00 3.82
197 198 5.293324 GCGTTATCTATTTCATCCACACACA 59.707 40.000 0.00 0.00 0.00 3.72
198 199 6.017934 GCGTTATCTATTTCATCCACACACAT 60.018 38.462 0.00 0.00 0.00 3.21
199 200 7.347448 CGTTATCTATTTCATCCACACACATG 58.653 38.462 0.00 0.00 0.00 3.21
200 201 5.762825 ATCTATTTCATCCACACACATGC 57.237 39.130 0.00 0.00 0.00 4.06
201 202 2.925578 ATTTCATCCACACACATGCG 57.074 45.000 0.00 0.00 0.00 4.73
202 203 1.603456 TTTCATCCACACACATGCGT 58.397 45.000 0.00 0.00 0.00 5.24
212 213 2.927856 ACATGCGTGTGAGGGGGA 60.928 61.111 11.65 0.00 37.14 4.81
213 214 2.300967 ACATGCGTGTGAGGGGGAT 61.301 57.895 11.65 0.00 37.14 3.85
214 215 1.524621 CATGCGTGTGAGGGGGATC 60.525 63.158 0.00 0.00 0.00 3.36
215 216 3.094062 ATGCGTGTGAGGGGGATCG 62.094 63.158 0.00 0.00 0.00 3.69
216 217 4.530857 GCGTGTGAGGGGGATCGG 62.531 72.222 0.00 0.00 0.00 4.18
217 218 3.849951 CGTGTGAGGGGGATCGGG 61.850 72.222 0.00 0.00 0.00 5.14
218 219 2.365105 GTGTGAGGGGGATCGGGA 60.365 66.667 0.00 0.00 0.00 5.14
219 220 2.041922 TGTGAGGGGGATCGGGAG 60.042 66.667 0.00 0.00 0.00 4.30
220 221 2.282446 GTGAGGGGGATCGGGAGA 59.718 66.667 0.00 0.00 46.90 3.71
221 222 1.834822 GTGAGGGGGATCGGGAGAG 60.835 68.421 0.00 0.00 45.48 3.20
222 223 2.203714 GAGGGGGATCGGGAGAGG 60.204 72.222 0.00 0.00 45.48 3.69
223 224 2.704198 AGGGGGATCGGGAGAGGA 60.704 66.667 0.00 0.00 45.48 3.71
224 225 2.285868 GGGGGATCGGGAGAGGAA 59.714 66.667 0.00 0.00 45.48 3.36
225 226 1.384082 GGGGGATCGGGAGAGGAAA 60.384 63.158 0.00 0.00 45.48 3.13
226 227 0.986550 GGGGGATCGGGAGAGGAAAA 60.987 60.000 0.00 0.00 45.48 2.29
227 228 0.916809 GGGGATCGGGAGAGGAAAAA 59.083 55.000 0.00 0.00 45.48 1.94
245 246 3.744238 AAAAAGGTGTGTGGCCATTAC 57.256 42.857 9.72 12.69 0.00 1.89
246 247 2.675658 AAAGGTGTGTGGCCATTACT 57.324 45.000 9.72 0.00 0.00 2.24
247 248 2.675658 AAGGTGTGTGGCCATTACTT 57.324 45.000 9.72 7.01 0.00 2.24
248 249 1.909700 AGGTGTGTGGCCATTACTTG 58.090 50.000 9.72 0.00 0.00 3.16
249 250 1.144913 AGGTGTGTGGCCATTACTTGT 59.855 47.619 9.72 0.00 0.00 3.16
250 251 1.960689 GGTGTGTGGCCATTACTTGTT 59.039 47.619 9.72 0.00 0.00 2.83
251 252 2.364002 GGTGTGTGGCCATTACTTGTTT 59.636 45.455 9.72 0.00 0.00 2.83
252 253 3.181470 GGTGTGTGGCCATTACTTGTTTT 60.181 43.478 9.72 0.00 0.00 2.43
253 254 3.801594 GTGTGTGGCCATTACTTGTTTTG 59.198 43.478 9.72 0.00 0.00 2.44
254 255 2.799978 GTGTGGCCATTACTTGTTTTGC 59.200 45.455 9.72 0.00 0.00 3.68
255 256 2.224161 TGTGGCCATTACTTGTTTTGCC 60.224 45.455 9.72 0.00 37.90 4.52
256 257 1.346068 TGGCCATTACTTGTTTTGCCC 59.654 47.619 0.00 0.00 36.58 5.36
257 258 1.346068 GGCCATTACTTGTTTTGCCCA 59.654 47.619 0.00 0.00 0.00 5.36
258 259 2.412870 GCCATTACTTGTTTTGCCCAC 58.587 47.619 0.00 0.00 0.00 4.61
259 260 2.224161 GCCATTACTTGTTTTGCCCACA 60.224 45.455 0.00 0.00 0.00 4.17
260 261 3.389221 CCATTACTTGTTTTGCCCACAC 58.611 45.455 0.00 0.00 0.00 3.82
261 262 2.853731 TTACTTGTTTTGCCCACACG 57.146 45.000 0.00 0.00 0.00 4.49
262 263 1.752683 TACTTGTTTTGCCCACACGT 58.247 45.000 0.00 0.00 31.97 4.49
263 264 1.752683 ACTTGTTTTGCCCACACGTA 58.247 45.000 0.00 0.00 0.00 3.57
264 265 1.673920 ACTTGTTTTGCCCACACGTAG 59.326 47.619 0.00 0.00 0.00 3.51
265 266 1.944024 CTTGTTTTGCCCACACGTAGA 59.056 47.619 0.00 0.00 0.00 2.59
266 267 2.264005 TGTTTTGCCCACACGTAGAT 57.736 45.000 0.00 0.00 0.00 1.98
267 268 3.404224 TGTTTTGCCCACACGTAGATA 57.596 42.857 0.00 0.00 0.00 1.98
268 269 3.945346 TGTTTTGCCCACACGTAGATAT 58.055 40.909 0.00 0.00 0.00 1.63
269 270 5.087391 TGTTTTGCCCACACGTAGATATA 57.913 39.130 0.00 0.00 0.00 0.86
270 271 5.676552 TGTTTTGCCCACACGTAGATATAT 58.323 37.500 0.00 0.00 0.00 0.86
271 272 5.525745 TGTTTTGCCCACACGTAGATATATG 59.474 40.000 0.00 0.00 0.00 1.78
272 273 3.953712 TGCCCACACGTAGATATATGG 57.046 47.619 0.00 0.00 0.00 2.74
274 275 3.247006 CCCACACGTAGATATATGGGC 57.753 52.381 0.00 0.00 40.40 5.36
275 276 2.832129 CCCACACGTAGATATATGGGCT 59.168 50.000 0.00 0.00 40.40 5.19
276 277 3.368427 CCCACACGTAGATATATGGGCTG 60.368 52.174 0.00 0.00 40.40 4.85
277 278 3.258372 CCACACGTAGATATATGGGCTGT 59.742 47.826 0.00 0.00 0.00 4.40
278 279 4.262463 CCACACGTAGATATATGGGCTGTT 60.262 45.833 0.00 0.00 0.00 3.16
279 280 5.297547 CACACGTAGATATATGGGCTGTTT 58.702 41.667 0.00 0.00 0.00 2.83
280 281 5.405571 CACACGTAGATATATGGGCTGTTTC 59.594 44.000 0.00 0.00 0.00 2.78
281 282 5.304614 ACACGTAGATATATGGGCTGTTTCT 59.695 40.000 0.00 0.00 0.00 2.52
282 283 5.864474 CACGTAGATATATGGGCTGTTTCTC 59.136 44.000 0.00 0.00 0.00 2.87
283 284 5.775701 ACGTAGATATATGGGCTGTTTCTCT 59.224 40.000 0.00 0.00 0.00 3.10
284 285 6.267928 ACGTAGATATATGGGCTGTTTCTCTT 59.732 38.462 0.00 0.00 0.00 2.85
285 286 7.450634 ACGTAGATATATGGGCTGTTTCTCTTA 59.549 37.037 0.00 0.00 0.00 2.10
286 287 8.470805 CGTAGATATATGGGCTGTTTCTCTTAT 58.529 37.037 0.00 0.00 0.00 1.73
289 290 9.326489 AGATATATGGGCTGTTTCTCTTATACA 57.674 33.333 0.00 0.00 0.00 2.29
290 291 9.372369 GATATATGGGCTGTTTCTCTTATACAC 57.628 37.037 0.00 0.00 0.00 2.90
291 292 4.216411 TGGGCTGTTTCTCTTATACACC 57.784 45.455 0.00 0.00 0.00 4.16
292 293 3.585289 TGGGCTGTTTCTCTTATACACCA 59.415 43.478 0.00 0.00 0.00 4.17
293 294 3.939592 GGGCTGTTTCTCTTATACACCAC 59.060 47.826 0.00 0.00 0.00 4.16
294 295 4.564821 GGGCTGTTTCTCTTATACACCACA 60.565 45.833 0.00 0.00 0.00 4.17
295 296 4.392138 GGCTGTTTCTCTTATACACCACAC 59.608 45.833 0.00 0.00 0.00 3.82
296 297 4.994852 GCTGTTTCTCTTATACACCACACA 59.005 41.667 0.00 0.00 0.00 3.72
297 298 5.468746 GCTGTTTCTCTTATACACCACACAA 59.531 40.000 0.00 0.00 0.00 3.33
298 299 6.017440 GCTGTTTCTCTTATACACCACACAAA 60.017 38.462 0.00 0.00 0.00 2.83
299 300 7.468084 GCTGTTTCTCTTATACACCACACAAAA 60.468 37.037 0.00 0.00 0.00 2.44
300 301 8.458573 TGTTTCTCTTATACACCACACAAAAT 57.541 30.769 0.00 0.00 0.00 1.82
301 302 8.349245 TGTTTCTCTTATACACCACACAAAATG 58.651 33.333 0.00 0.00 0.00 2.32
302 303 6.494893 TCTCTTATACACCACACAAAATGC 57.505 37.500 0.00 0.00 0.00 3.56
303 304 5.121611 TCTCTTATACACCACACAAAATGCG 59.878 40.000 0.00 0.00 0.00 4.73
304 305 4.757657 TCTTATACACCACACAAAATGCGT 59.242 37.500 0.00 0.00 0.00 5.24
305 306 2.765108 TACACCACACAAAATGCGTG 57.235 45.000 0.00 0.00 40.32 5.34
306 307 1.098869 ACACCACACAAAATGCGTGA 58.901 45.000 0.35 0.00 32.52 4.35
307 308 1.065401 ACACCACACAAAATGCGTGAG 59.935 47.619 0.35 0.00 32.52 3.51
320 321 2.738147 CGTGAGCAGACCCTTAACG 58.262 57.895 0.00 0.00 0.00 3.18
321 322 1.352156 CGTGAGCAGACCCTTAACGC 61.352 60.000 0.00 0.00 0.00 4.84
322 323 1.019805 GTGAGCAGACCCTTAACGCC 61.020 60.000 0.00 0.00 0.00 5.68
323 324 1.449778 GAGCAGACCCTTAACGCCC 60.450 63.158 0.00 0.00 0.00 6.13
324 325 2.180159 GAGCAGACCCTTAACGCCCA 62.180 60.000 0.00 0.00 0.00 5.36
325 326 2.038837 GCAGACCCTTAACGCCCAC 61.039 63.158 0.00 0.00 0.00 4.61
326 327 1.373435 CAGACCCTTAACGCCCACA 59.627 57.895 0.00 0.00 0.00 4.17
327 328 0.953960 CAGACCCTTAACGCCCACAC 60.954 60.000 0.00 0.00 0.00 3.82
328 329 2.030958 GACCCTTAACGCCCACACG 61.031 63.158 0.00 0.00 39.50 4.49
344 345 2.404215 ACACGTGTGACACTTATCAGC 58.596 47.619 22.71 0.00 31.34 4.26
345 346 1.386748 CACGTGTGACACTTATCAGCG 59.613 52.381 14.42 0.10 35.52 5.18
346 347 1.000607 ACGTGTGACACTTATCAGCGT 60.001 47.619 14.42 0.78 36.90 5.07
347 348 1.649171 CGTGTGACACTTATCAGCGTC 59.351 52.381 14.42 0.00 33.31 5.19
348 349 1.993370 GTGTGACACTTATCAGCGTCC 59.007 52.381 8.76 0.00 31.88 4.79
349 350 1.616374 TGTGACACTTATCAGCGTCCA 59.384 47.619 7.20 0.00 31.88 4.02
350 351 2.036604 TGTGACACTTATCAGCGTCCAA 59.963 45.455 7.20 0.00 31.88 3.53
351 352 3.064207 GTGACACTTATCAGCGTCCAAA 58.936 45.455 0.00 0.00 31.88 3.28
352 353 3.064207 TGACACTTATCAGCGTCCAAAC 58.936 45.455 0.00 0.00 31.88 2.93
353 354 2.415512 GACACTTATCAGCGTCCAAACC 59.584 50.000 0.00 0.00 0.00 3.27
354 355 2.038557 ACACTTATCAGCGTCCAAACCT 59.961 45.455 0.00 0.00 0.00 3.50
355 356 3.259876 ACACTTATCAGCGTCCAAACCTA 59.740 43.478 0.00 0.00 0.00 3.08
356 357 4.081087 ACACTTATCAGCGTCCAAACCTAT 60.081 41.667 0.00 0.00 0.00 2.57
357 358 4.876107 CACTTATCAGCGTCCAAACCTATT 59.124 41.667 0.00 0.00 0.00 1.73
358 359 6.046593 CACTTATCAGCGTCCAAACCTATTA 58.953 40.000 0.00 0.00 0.00 0.98
359 360 6.706270 CACTTATCAGCGTCCAAACCTATTAT 59.294 38.462 0.00 0.00 0.00 1.28
360 361 7.870954 CACTTATCAGCGTCCAAACCTATTATA 59.129 37.037 0.00 0.00 0.00 0.98
361 362 8.594550 ACTTATCAGCGTCCAAACCTATTATAT 58.405 33.333 0.00 0.00 0.00 0.86
362 363 8.771920 TTATCAGCGTCCAAACCTATTATATG 57.228 34.615 0.00 0.00 0.00 1.78
363 364 6.413783 TCAGCGTCCAAACCTATTATATGA 57.586 37.500 0.00 0.00 0.00 2.15
364 365 6.822442 TCAGCGTCCAAACCTATTATATGAA 58.178 36.000 0.00 0.00 0.00 2.57
365 366 7.276658 TCAGCGTCCAAACCTATTATATGAAA 58.723 34.615 0.00 0.00 0.00 2.69
366 367 7.936847 TCAGCGTCCAAACCTATTATATGAAAT 59.063 33.333 0.00 0.00 0.00 2.17
367 368 9.214957 CAGCGTCCAAACCTATTATATGAAATA 57.785 33.333 0.00 0.00 0.00 1.40
368 369 9.787435 AGCGTCCAAACCTATTATATGAAATAA 57.213 29.630 0.00 0.00 29.06 1.40
383 384 6.661304 ATGAAATAATCATCCTTTGGCTCC 57.339 37.500 0.00 0.00 45.91 4.70
384 385 5.517924 TGAAATAATCATCCTTTGGCTCCA 58.482 37.500 0.00 0.00 31.50 3.86
385 386 5.957168 TGAAATAATCATCCTTTGGCTCCAA 59.043 36.000 0.00 0.00 31.50 3.53
386 387 6.440010 TGAAATAATCATCCTTTGGCTCCAAA 59.560 34.615 12.93 12.93 37.05 3.28
387 388 6.872585 AATAATCATCCTTTGGCTCCAAAA 57.127 33.333 14.28 2.39 44.07 2.44
388 389 4.813750 AATCATCCTTTGGCTCCAAAAG 57.186 40.909 14.28 9.17 44.07 2.27
389 390 3.524095 TCATCCTTTGGCTCCAAAAGA 57.476 42.857 14.28 13.77 44.07 2.52
390 391 3.424703 TCATCCTTTGGCTCCAAAAGAG 58.575 45.455 15.43 8.41 44.07 2.85
391 392 3.074390 TCATCCTTTGGCTCCAAAAGAGA 59.926 43.478 15.43 12.31 46.50 3.10
396 397 3.625745 GGCTCCAAAAGAGACCGAA 57.374 52.632 0.00 0.00 46.08 4.30
397 398 1.157585 GGCTCCAAAAGAGACCGAAC 58.842 55.000 0.00 0.00 46.08 3.95
398 399 1.542547 GGCTCCAAAAGAGACCGAACA 60.543 52.381 0.00 0.00 46.08 3.18
399 400 1.531578 GCTCCAAAAGAGACCGAACAC 59.468 52.381 0.00 0.00 46.50 3.32
400 401 2.833794 CTCCAAAAGAGACCGAACACA 58.166 47.619 0.00 0.00 46.50 3.72
401 402 2.802816 CTCCAAAAGAGACCGAACACAG 59.197 50.000 0.00 0.00 46.50 3.66
402 403 1.264288 CCAAAAGAGACCGAACACAGC 59.736 52.381 0.00 0.00 0.00 4.40
403 404 1.070577 CAAAAGAGACCGAACACAGCG 60.071 52.381 0.00 0.00 0.00 5.18
410 411 4.012895 CGAACACAGCGGCCACAC 62.013 66.667 2.24 0.00 0.00 3.82
411 412 4.012895 GAACACAGCGGCCACACG 62.013 66.667 2.24 0.00 0.00 4.49
419 420 2.357517 CGGCCACACGCTTCTTCT 60.358 61.111 2.24 0.00 37.74 2.85
420 421 2.383527 CGGCCACACGCTTCTTCTC 61.384 63.158 2.24 0.00 37.74 2.87
421 422 2.035442 GGCCACACGCTTCTTCTCC 61.035 63.158 0.00 0.00 37.74 3.71
422 423 1.004440 GCCACACGCTTCTTCTCCT 60.004 57.895 0.00 0.00 0.00 3.69
423 424 0.603975 GCCACACGCTTCTTCTCCTT 60.604 55.000 0.00 0.00 0.00 3.36
424 425 1.433534 CCACACGCTTCTTCTCCTTC 58.566 55.000 0.00 0.00 0.00 3.46
425 426 1.001406 CCACACGCTTCTTCTCCTTCT 59.999 52.381 0.00 0.00 0.00 2.85
426 427 2.548920 CCACACGCTTCTTCTCCTTCTT 60.549 50.000 0.00 0.00 0.00 2.52
427 428 2.734079 CACACGCTTCTTCTCCTTCTTC 59.266 50.000 0.00 0.00 0.00 2.87
428 429 2.630580 ACACGCTTCTTCTCCTTCTTCT 59.369 45.455 0.00 0.00 0.00 2.85
429 430 3.070302 ACACGCTTCTTCTCCTTCTTCTT 59.930 43.478 0.00 0.00 0.00 2.52
430 431 3.677596 CACGCTTCTTCTCCTTCTTCTTC 59.322 47.826 0.00 0.00 0.00 2.87
431 432 3.576550 ACGCTTCTTCTCCTTCTTCTTCT 59.423 43.478 0.00 0.00 0.00 2.85
432 433 4.039852 ACGCTTCTTCTCCTTCTTCTTCTT 59.960 41.667 0.00 0.00 0.00 2.52
433 434 4.625311 CGCTTCTTCTCCTTCTTCTTCTTC 59.375 45.833 0.00 0.00 0.00 2.87
434 435 5.566627 CGCTTCTTCTCCTTCTTCTTCTTCT 60.567 44.000 0.00 0.00 0.00 2.85
435 436 6.230472 GCTTCTTCTCCTTCTTCTTCTTCTT 58.770 40.000 0.00 0.00 0.00 2.52
436 437 6.368791 GCTTCTTCTCCTTCTTCTTCTTCTTC 59.631 42.308 0.00 0.00 0.00 2.87
437 438 7.610580 TTCTTCTCCTTCTTCTTCTTCTTCT 57.389 36.000 0.00 0.00 0.00 2.85
447 448 8.885494 TTCTTCTTCTTCTTCTTCTTCTTCTG 57.115 34.615 0.00 0.00 0.00 3.02
448 449 8.243961 TCTTCTTCTTCTTCTTCTTCTTCTGA 57.756 34.615 0.00 0.00 0.00 3.27
449 450 8.869109 TCTTCTTCTTCTTCTTCTTCTTCTGAT 58.131 33.333 0.00 0.00 0.00 2.90
515 519 3.243737 TGTTATCGCAGGTGGCATAGTAG 60.244 47.826 0.00 0.00 45.17 2.57
532 536 8.768955 GGCATAGTAGTGATCAGAAAATACAAG 58.231 37.037 0.00 0.00 0.00 3.16
546 550 7.972277 CAGAAAATACAAGTTTCCAGATGGATG 59.028 37.037 1.61 0.54 44.98 3.51
565 569 2.639286 CAACAACACAGAGGCCGC 59.361 61.111 0.00 0.00 0.00 6.53
566 570 2.972505 AACAACACAGAGGCCGCG 60.973 61.111 0.00 0.00 0.00 6.46
569 573 2.434884 AACACAGAGGCCGCGATG 60.435 61.111 8.23 10.69 0.00 3.84
581 585 2.543802 CGCGATGTCTCGGCCTAGA 61.544 63.158 0.00 2.11 45.15 2.43
601 605 4.110482 AGACGGACACGATATTTTGTAGC 58.890 43.478 0.00 0.00 44.60 3.58
602 606 3.852286 ACGGACACGATATTTTGTAGCA 58.148 40.909 0.00 0.00 44.60 3.49
603 607 4.439057 ACGGACACGATATTTTGTAGCAT 58.561 39.130 0.00 0.00 44.60 3.79
604 608 4.506654 ACGGACACGATATTTTGTAGCATC 59.493 41.667 0.00 0.00 44.60 3.91
615 619 3.616956 TTGTAGCATCTCTTGTCCCTG 57.383 47.619 0.00 0.00 0.00 4.45
621 625 4.583871 AGCATCTCTTGTCCCTGTTTTAG 58.416 43.478 0.00 0.00 0.00 1.85
628 646 3.788227 TGTCCCTGTTTTAGTCAGCAT 57.212 42.857 0.00 0.00 0.00 3.79
665 690 4.503910 CCTTTATTACCCCTTTGCAAAGC 58.496 43.478 29.93 0.00 34.69 3.51
675 700 1.131126 CTTTGCAAAGCCGTCATCGAT 59.869 47.619 25.26 0.00 39.71 3.59
676 701 0.447406 TTGCAAAGCCGTCATCGATG 59.553 50.000 19.61 19.61 39.71 3.84
715 740 4.683334 GCACGCAAAGCCGTCACC 62.683 66.667 0.00 0.00 39.83 4.02
716 741 4.368808 CACGCAAAGCCGTCACCG 62.369 66.667 0.00 0.00 39.83 4.94
717 742 4.595538 ACGCAAAGCCGTCACCGA 62.596 61.111 0.00 0.00 36.61 4.69
718 743 4.072088 CGCAAAGCCGTCACCGAC 62.072 66.667 0.00 0.00 35.63 4.79
720 745 2.954753 GCAAAGCCGTCACCGACTG 61.955 63.158 0.00 0.00 35.63 3.51
739 777 7.174946 ACCGACTGTGATGATTTGATTTTTACT 59.825 33.333 0.00 0.00 0.00 2.24
740 778 7.693951 CCGACTGTGATGATTTGATTTTTACTC 59.306 37.037 0.00 0.00 0.00 2.59
748 792 9.696917 GATGATTTGATTTTTACTCCAACAAGT 57.303 29.630 0.00 0.00 0.00 3.16
783 836 2.889170 AAAGAAGAAGAAGGGGGAGC 57.111 50.000 0.00 0.00 0.00 4.70
787 840 2.447047 AGAAGAAGAAGGGGGAGCAAAA 59.553 45.455 0.00 0.00 0.00 2.44
845 909 1.891616 GTTCCTCCCTCGTCTGACC 59.108 63.158 1.55 0.00 0.00 4.02
929 1015 2.202222 CGCCTTTGCTTCGCTTCG 60.202 61.111 0.00 0.00 34.43 3.79
973 1063 1.000506 AGCGTGGGCGTGGTATATAAG 59.999 52.381 0.00 0.00 46.35 1.73
1152 1244 1.913762 CCCCGCGGATCCCTAATCT 60.914 63.158 30.73 0.00 34.56 2.40
1153 1245 1.481056 CCCCGCGGATCCCTAATCTT 61.481 60.000 30.73 0.00 34.56 2.40
1156 1248 1.608283 CCGCGGATCCCTAATCTTTCC 60.608 57.143 24.07 0.00 34.56 3.13
1182 1274 2.278206 CTCACCGCCGATCACTCG 60.278 66.667 0.00 0.00 44.62 4.18
1192 1284 1.331241 CGATCACTCGTCACTGTGTG 58.669 55.000 7.79 2.22 40.07 3.82
1193 1285 1.063806 GATCACTCGTCACTGTGTGC 58.936 55.000 7.79 1.70 34.29 4.57
1221 1344 2.943036 TTAGTTTCTTCCGGCCAGTT 57.057 45.000 2.24 0.00 0.00 3.16
1260 1384 2.294195 TGGATTGGGGGATCTTAGTCCA 60.294 50.000 0.00 0.00 40.17 4.02
1262 1386 3.435169 GGATTGGGGGATCTTAGTCCAAC 60.435 52.174 0.00 0.00 39.85 3.77
1269 1393 3.118592 GGGATCTTAGTCCAACTGAGTGG 60.119 52.174 0.00 0.00 40.17 4.00
1298 1423 1.078759 GTCGCTGTTCTGTGATCCCG 61.079 60.000 0.00 0.00 0.00 5.14
1345 1470 1.769026 TGCTGGAGACTAGCAGGTAG 58.231 55.000 5.02 5.02 45.52 3.18
1364 1489 7.281098 CAGGTAGTACTAGAATGTGTCCTCTA 58.719 42.308 1.87 0.00 0.00 2.43
1370 1495 5.197451 ACTAGAATGTGTCCTCTAGACCTG 58.803 45.833 11.96 0.00 45.68 4.00
1405 1530 2.350522 AGATTGCGTGATTGGTCTGAC 58.649 47.619 0.00 0.00 0.00 3.51
1431 1558 4.393062 ACATGTCTTCTTACAGCCGATTTG 59.607 41.667 0.00 0.00 31.70 2.32
1435 1562 3.684788 TCTTCTTACAGCCGATTTGCTTC 59.315 43.478 0.00 0.00 40.32 3.86
1436 1563 1.999735 TCTTACAGCCGATTTGCTTCG 59.000 47.619 0.00 0.00 40.32 3.79
1454 1581 1.406219 CGTTGGTCGATGCAGAGTCG 61.406 60.000 1.75 1.75 42.86 4.18
1469 1596 2.132762 GAGTCGGGTATTGTATTGCCG 58.867 52.381 0.00 0.00 0.00 5.69
1479 1606 1.522806 GTATTGCCGGCCGTGATGA 60.523 57.895 26.77 0.00 0.00 2.92
1480 1607 1.092921 GTATTGCCGGCCGTGATGAA 61.093 55.000 26.77 10.14 0.00 2.57
1488 1615 1.523758 GGCCGTGATGAAACAAGAGT 58.476 50.000 0.00 0.00 0.00 3.24
1491 1618 1.197721 CCGTGATGAAACAAGAGTGCC 59.802 52.381 0.00 0.00 0.00 5.01
1496 1623 1.204312 GAAACAAGAGTGCCGTCGC 59.796 57.895 0.00 0.00 0.00 5.19
1505 1637 0.597637 AGTGCCGTCGCTATGTATGC 60.598 55.000 0.00 0.00 35.36 3.14
1512 1644 4.779475 GCTATGTATGCGTGGCCT 57.221 55.556 3.32 0.00 32.76 5.19
1513 1645 2.238353 GCTATGTATGCGTGGCCTG 58.762 57.895 3.32 0.00 32.76 4.85
1516 1648 2.805295 GCTATGTATGCGTGGCCTGTTA 60.805 50.000 3.32 0.00 32.76 2.41
1517 1649 2.411628 ATGTATGCGTGGCCTGTTAA 57.588 45.000 3.32 0.00 0.00 2.01
1518 1650 2.186532 TGTATGCGTGGCCTGTTAAA 57.813 45.000 3.32 0.00 0.00 1.52
1519 1651 2.080693 TGTATGCGTGGCCTGTTAAAG 58.919 47.619 3.32 0.00 0.00 1.85
1520 1652 2.081462 GTATGCGTGGCCTGTTAAAGT 58.919 47.619 3.32 0.00 0.00 2.66
1521 1653 0.881118 ATGCGTGGCCTGTTAAAGTG 59.119 50.000 3.32 0.00 0.00 3.16
1522 1654 1.081442 GCGTGGCCTGTTAAAGTGC 60.081 57.895 3.32 0.00 0.00 4.40
1523 1655 1.791103 GCGTGGCCTGTTAAAGTGCA 61.791 55.000 3.32 0.00 0.00 4.57
1533 1665 1.463444 GTTAAAGTGCACCACGGCTAG 59.537 52.381 14.63 0.00 39.64 3.42
1536 1668 4.697756 GTGCACCACGGCTAGCCA 62.698 66.667 32.47 9.20 35.37 4.75
1540 1672 3.075005 ACCACGGCTAGCCATCGT 61.075 61.111 32.47 21.55 37.64 3.73
1541 1673 2.279517 CCACGGCTAGCCATCGTC 60.280 66.667 32.47 5.42 34.73 4.20
1542 1674 2.494445 CACGGCTAGCCATCGTCA 59.506 61.111 32.47 0.00 34.73 4.35
1543 1675 1.878522 CACGGCTAGCCATCGTCAC 60.879 63.158 32.47 3.87 34.73 3.67
1544 1676 2.348104 ACGGCTAGCCATCGTCACA 61.348 57.895 32.47 0.00 35.37 3.58
1545 1677 1.878522 CGGCTAGCCATCGTCACAC 60.879 63.158 32.47 2.33 35.37 3.82
1586 1718 4.012374 ACATCCATGTTTGCTGTCCTAAG 58.988 43.478 0.00 0.00 37.90 2.18
1651 1783 6.260936 AGAATCTGGTTTTGACTGTACAAGTG 59.739 38.462 0.00 0.00 40.07 3.16
1657 1789 5.448632 GGTTTTGACTGTACAAGTGTTCTGG 60.449 44.000 0.00 0.00 40.07 3.86
1671 1803 0.475475 TTCTGGCCAGCATATCAGGG 59.525 55.000 28.91 0.73 0.00 4.45
1676 1808 1.271054 GGCCAGCATATCAGGGTAGTG 60.271 57.143 0.00 0.00 0.00 2.74
1677 1809 1.879796 GCCAGCATATCAGGGTAGTGC 60.880 57.143 0.00 0.00 36.11 4.40
1685 1817 2.839486 TCAGGGTAGTGCTGAACTTG 57.161 50.000 0.00 0.00 40.56 3.16
1710 1843 3.162666 TCGTACCTGGCTATTAGGGATG 58.837 50.000 0.00 0.00 39.71 3.51
1761 1923 1.071385 AGTCTGTCTTGAGGGTGCAAG 59.929 52.381 0.00 0.00 45.10 4.01
1790 1952 1.200948 GGCAGGTTCAGTTTGAGCATC 59.799 52.381 0.00 0.00 28.47 3.91
1844 2009 9.398538 TGGTAGTCTTACTTTTTGTGTTGTTAT 57.601 29.630 0.00 0.00 0.00 1.89
1855 2020 9.746711 CTTTTTGTGTTGTTATTAGATCTCTCG 57.253 33.333 0.00 0.00 0.00 4.04
1928 2093 2.560542 GCTGACAGAGAGAGTCCTCAAA 59.439 50.000 6.65 0.00 41.87 2.69
1998 2163 3.119708 CCTCAACATTAAGCAGCCACTTC 60.120 47.826 0.00 0.00 0.00 3.01
2314 2487 3.054728 TGTTGTCAAAGACCCAGAGTTGA 60.055 43.478 0.00 0.00 0.00 3.18
2433 2606 2.422597 CACTCATGCCGTTACTTTGGA 58.577 47.619 0.00 0.00 0.00 3.53
2442 2615 3.754850 GCCGTTACTTTGGATACCTTGTT 59.245 43.478 0.00 0.00 0.00 2.83
2466 2639 3.241553 CACGCAAGAAGTATGTCATCTCG 59.758 47.826 0.00 0.00 43.62 4.04
2472 2645 6.423302 GCAAGAAGTATGTCATCTCGATTGAT 59.577 38.462 1.99 0.00 0.00 2.57
2502 2675 2.677875 CCAGCAAAGGACCCTGCC 60.678 66.667 11.63 0.00 39.47 4.85
2553 2726 5.565242 GCACATGATCAATTTGAAGACACCA 60.565 40.000 0.00 0.00 0.00 4.17
2703 2876 3.340727 GGACTACGACCCAATGACG 57.659 57.895 0.00 0.00 0.00 4.35
2709 2882 1.298157 ACGACCCAATGACGCATGTG 61.298 55.000 4.30 4.30 0.00 3.21
2724 2897 0.606401 ATGTGGTGAAGCGGAACCAG 60.606 55.000 7.56 0.00 46.92 4.00
2784 2957 2.100631 CGGTGCGATGTTCCCTGTC 61.101 63.158 0.00 0.00 0.00 3.51
2826 2999 3.322466 CGTGAGGTTCTGGGGCCT 61.322 66.667 0.84 0.00 37.91 5.19
2850 3023 3.797353 TTCCCTGGCCTGCGGATC 61.797 66.667 16.81 0.00 0.00 3.36
2949 3122 2.572284 GGCTACGGCGTGAAGACT 59.428 61.111 24.86 0.00 39.81 3.24
2961 3134 2.689646 GTGAAGACTGGACTGCCTTAC 58.310 52.381 0.00 0.00 34.31 2.34
3069 3242 0.169230 TCTTCGAGTCGCTCAAGCTC 59.831 55.000 7.92 0.00 39.32 4.09
3072 3245 1.582424 CGAGTCGCTCAAGCTCTCG 60.582 63.158 21.87 21.87 46.65 4.04
3100 3273 2.946564 CAGTTACTGTCGATGACTGCA 58.053 47.619 3.88 0.00 35.41 4.41
3118 3291 1.506493 CATTAAGGAGCTAGCTGGCG 58.494 55.000 24.99 0.00 37.29 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.870435 GCCATGTCGGACAACTACAGTT 60.870 50.000 15.72 0.00 36.12 3.16
11 12 1.337823 GCCATGTCGGACAACTACAGT 60.338 52.381 15.72 0.00 36.56 3.55
12 13 1.337728 TGCCATGTCGGACAACTACAG 60.338 52.381 15.72 1.98 36.56 2.74
13 14 0.682292 TGCCATGTCGGACAACTACA 59.318 50.000 15.72 8.46 36.56 2.74
14 15 1.463444 GTTGCCATGTCGGACAACTAC 59.537 52.381 15.72 10.65 43.12 2.73
15 16 1.609580 GGTTGCCATGTCGGACAACTA 60.610 52.381 15.72 2.39 44.53 2.24
16 17 0.889186 GGTTGCCATGTCGGACAACT 60.889 55.000 15.72 0.00 44.53 3.16
17 18 1.579429 GGTTGCCATGTCGGACAAC 59.421 57.895 15.72 8.08 44.46 3.32
18 19 1.963855 CGGTTGCCATGTCGGACAA 60.964 57.895 15.72 0.00 36.56 3.18
19 20 2.358125 CGGTTGCCATGTCGGACA 60.358 61.111 14.01 14.01 36.56 4.02
20 21 1.635663 CTTCGGTTGCCATGTCGGAC 61.636 60.000 0.00 0.00 36.56 4.79
21 22 1.375396 CTTCGGTTGCCATGTCGGA 60.375 57.895 0.00 0.00 36.56 4.55
22 23 1.234615 AACTTCGGTTGCCATGTCGG 61.235 55.000 0.00 0.00 36.72 4.79
23 24 0.165944 GAACTTCGGTTGCCATGTCG 59.834 55.000 0.00 0.00 38.41 4.35
24 25 1.197721 CTGAACTTCGGTTGCCATGTC 59.802 52.381 0.00 0.00 38.41 3.06
25 26 1.238439 CTGAACTTCGGTTGCCATGT 58.762 50.000 0.00 0.00 38.41 3.21
26 27 0.109597 GCTGAACTTCGGTTGCCATG 60.110 55.000 0.00 0.00 38.41 3.66
27 28 1.577328 CGCTGAACTTCGGTTGCCAT 61.577 55.000 0.00 0.00 38.41 4.40
28 29 2.250939 CGCTGAACTTCGGTTGCCA 61.251 57.895 0.00 0.00 38.41 4.92
29 30 1.959226 TCGCTGAACTTCGGTTGCC 60.959 57.895 0.00 0.00 38.41 4.52
30 31 1.204312 GTCGCTGAACTTCGGTTGC 59.796 57.895 0.00 0.00 38.41 4.17
31 32 1.136252 CATGTCGCTGAACTTCGGTTG 60.136 52.381 0.00 0.00 38.41 3.77
32 33 1.148310 CATGTCGCTGAACTTCGGTT 58.852 50.000 0.00 0.00 41.38 4.44
33 34 0.317160 TCATGTCGCTGAACTTCGGT 59.683 50.000 0.00 0.00 0.00 4.69
34 35 0.716108 GTCATGTCGCTGAACTTCGG 59.284 55.000 0.00 0.00 0.00 4.30
35 36 1.418373 TGTCATGTCGCTGAACTTCG 58.582 50.000 0.00 0.00 0.00 3.79
36 37 2.802816 AGTTGTCATGTCGCTGAACTTC 59.197 45.455 0.00 0.00 0.00 3.01
37 38 2.838736 AGTTGTCATGTCGCTGAACTT 58.161 42.857 0.00 0.00 0.00 2.66
38 39 2.533266 AGTTGTCATGTCGCTGAACT 57.467 45.000 0.00 0.00 0.00 3.01
39 40 3.057019 TGTAGTTGTCATGTCGCTGAAC 58.943 45.455 0.00 0.00 0.00 3.18
40 41 3.243737 ACTGTAGTTGTCATGTCGCTGAA 60.244 43.478 0.00 0.00 0.00 3.02
41 42 2.296190 ACTGTAGTTGTCATGTCGCTGA 59.704 45.455 0.00 0.00 0.00 4.26
42 43 2.677199 ACTGTAGTTGTCATGTCGCTG 58.323 47.619 0.00 0.00 0.00 5.18
43 44 3.386768 AACTGTAGTTGTCATGTCGCT 57.613 42.857 0.00 0.00 36.80 4.93
44 45 5.371629 GTTTAACTGTAGTTGTCATGTCGC 58.628 41.667 7.50 0.00 38.90 5.19
45 46 5.400188 TCGTTTAACTGTAGTTGTCATGTCG 59.600 40.000 7.50 3.74 38.90 4.35
46 47 6.758593 TCGTTTAACTGTAGTTGTCATGTC 57.241 37.500 7.50 0.00 38.90 3.06
47 48 6.535865 TGTTCGTTTAACTGTAGTTGTCATGT 59.464 34.615 7.50 0.00 38.90 3.21
48 49 6.939627 TGTTCGTTTAACTGTAGTTGTCATG 58.060 36.000 7.50 0.00 38.90 3.07
49 50 7.307751 CCATGTTCGTTTAACTGTAGTTGTCAT 60.308 37.037 7.50 0.51 38.90 3.06
50 51 6.018588 CCATGTTCGTTTAACTGTAGTTGTCA 60.019 38.462 7.50 0.00 38.90 3.58
51 52 6.201425 TCCATGTTCGTTTAACTGTAGTTGTC 59.799 38.462 7.50 0.00 38.90 3.18
52 53 6.018507 GTCCATGTTCGTTTAACTGTAGTTGT 60.019 38.462 7.50 0.00 38.90 3.32
53 54 6.360329 GTCCATGTTCGTTTAACTGTAGTTG 58.640 40.000 7.50 0.00 38.90 3.16
54 55 5.176223 CGTCCATGTTCGTTTAACTGTAGTT 59.824 40.000 2.51 2.51 38.99 2.24
55 56 4.682860 CGTCCATGTTCGTTTAACTGTAGT 59.317 41.667 0.00 0.00 38.99 2.73
56 57 4.919168 TCGTCCATGTTCGTTTAACTGTAG 59.081 41.667 6.65 0.00 38.99 2.74
57 58 4.869215 TCGTCCATGTTCGTTTAACTGTA 58.131 39.130 6.65 0.00 38.99 2.74
58 59 3.719924 TCGTCCATGTTCGTTTAACTGT 58.280 40.909 6.65 0.00 38.99 3.55
59 60 3.122948 CCTCGTCCATGTTCGTTTAACTG 59.877 47.826 6.65 0.00 38.99 3.16
60 61 3.323243 CCTCGTCCATGTTCGTTTAACT 58.677 45.455 6.65 0.00 38.99 2.24
61 62 2.414138 CCCTCGTCCATGTTCGTTTAAC 59.586 50.000 6.65 0.00 38.67 2.01
62 63 2.037511 ACCCTCGTCCATGTTCGTTTAA 59.962 45.455 6.65 0.00 0.00 1.52
63 64 1.619827 ACCCTCGTCCATGTTCGTTTA 59.380 47.619 6.65 0.00 0.00 2.01
64 65 0.395312 ACCCTCGTCCATGTTCGTTT 59.605 50.000 6.65 0.00 0.00 3.60
65 66 0.037605 GACCCTCGTCCATGTTCGTT 60.038 55.000 6.65 0.00 32.40 3.85
66 67 0.898789 AGACCCTCGTCCATGTTCGT 60.899 55.000 6.65 0.00 40.12 3.85
67 68 0.458543 CAGACCCTCGTCCATGTTCG 60.459 60.000 0.00 0.00 40.12 3.95
68 69 0.108138 CCAGACCCTCGTCCATGTTC 60.108 60.000 0.00 0.00 40.12 3.18
69 70 0.544357 TCCAGACCCTCGTCCATGTT 60.544 55.000 0.00 0.00 40.12 2.71
70 71 1.078528 TCCAGACCCTCGTCCATGT 59.921 57.895 0.00 0.00 40.12 3.21
71 72 1.517832 GTCCAGACCCTCGTCCATG 59.482 63.158 0.00 0.00 40.12 3.66
72 73 1.686110 GGTCCAGACCCTCGTCCAT 60.686 63.158 5.46 0.00 45.68 3.41
73 74 2.283676 GGTCCAGACCCTCGTCCA 60.284 66.667 5.46 0.00 45.68 4.02
82 83 1.589716 GCAGTTGCCATGGTCCAGAC 61.590 60.000 14.67 5.40 34.31 3.51
83 84 1.303561 GCAGTTGCCATGGTCCAGA 60.304 57.895 14.67 0.00 34.31 3.86
84 85 2.693762 CGCAGTTGCCATGGTCCAG 61.694 63.158 14.67 1.29 37.91 3.86
85 86 2.672651 CGCAGTTGCCATGGTCCA 60.673 61.111 14.67 0.00 37.91 4.02
86 87 3.443045 CCGCAGTTGCCATGGTCC 61.443 66.667 14.67 1.25 37.91 4.46
87 88 3.443045 CCCGCAGTTGCCATGGTC 61.443 66.667 14.67 6.41 37.91 4.02
88 89 3.965258 TCCCGCAGTTGCCATGGT 61.965 61.111 14.67 0.00 37.91 3.55
89 90 3.443045 GTCCCGCAGTTGCCATGG 61.443 66.667 7.63 7.63 37.91 3.66
90 91 3.803082 CGTCCCGCAGTTGCCATG 61.803 66.667 0.00 0.00 37.91 3.66
104 105 4.994201 TGACAGTCACCGCGCGTC 62.994 66.667 29.95 17.85 0.00 5.19
129 130 1.291272 GTACCTCGTGGTCCCACAC 59.709 63.158 13.38 1.36 44.78 3.82
130 131 2.270257 CGTACCTCGTGGTCCCACA 61.270 63.158 13.38 3.38 44.78 4.17
131 132 1.930908 CTCGTACCTCGTGGTCCCAC 61.931 65.000 13.38 6.38 44.78 4.61
132 133 1.676635 CTCGTACCTCGTGGTCCCA 60.677 63.158 13.38 0.00 44.78 4.37
133 134 2.413142 CCTCGTACCTCGTGGTCCC 61.413 68.421 13.38 4.37 44.78 4.46
134 135 3.194719 CCTCGTACCTCGTGGTCC 58.805 66.667 13.38 0.00 44.78 4.46
138 139 0.525668 GTCATGCCTCGTACCTCGTG 60.526 60.000 0.00 0.00 40.80 4.35
139 140 1.807886 GTCATGCCTCGTACCTCGT 59.192 57.895 0.00 0.00 40.80 4.18
140 141 1.298413 CGTCATGCCTCGTACCTCG 60.298 63.158 0.00 0.00 41.41 4.63
141 142 0.172803 AACGTCATGCCTCGTACCTC 59.827 55.000 9.85 0.00 39.39 3.85
142 143 0.172803 GAACGTCATGCCTCGTACCT 59.827 55.000 9.85 0.00 39.39 3.08
143 144 1.138047 CGAACGTCATGCCTCGTACC 61.138 60.000 9.85 5.87 39.39 3.34
144 145 1.138047 CCGAACGTCATGCCTCGTAC 61.138 60.000 9.85 0.00 39.39 3.67
145 146 1.138036 CCGAACGTCATGCCTCGTA 59.862 57.895 9.85 0.00 39.39 3.43
146 147 2.126071 CCGAACGTCATGCCTCGT 60.126 61.111 4.57 5.00 42.12 4.18
147 148 2.885644 CCCGAACGTCATGCCTCG 60.886 66.667 0.00 0.00 0.00 4.63
148 149 2.511600 CCCCGAACGTCATGCCTC 60.512 66.667 0.00 0.00 0.00 4.70
149 150 4.778143 GCCCCGAACGTCATGCCT 62.778 66.667 0.00 0.00 0.00 4.75
152 153 3.487202 CACGCCCCGAACGTCATG 61.487 66.667 0.00 0.00 42.96 3.07
153 154 3.998672 ACACGCCCCGAACGTCAT 61.999 61.111 0.00 0.00 42.96 3.06
154 155 4.953868 CACACGCCCCGAACGTCA 62.954 66.667 0.00 0.00 42.96 4.35
162 163 4.789123 ATAACGCCCACACGCCCC 62.789 66.667 0.00 0.00 36.19 5.80
163 164 2.300850 TAGATAACGCCCACACGCCC 62.301 60.000 0.00 0.00 36.19 6.13
164 165 0.249741 ATAGATAACGCCCACACGCC 60.250 55.000 0.00 0.00 36.19 5.68
165 166 1.578583 AATAGATAACGCCCACACGC 58.421 50.000 0.00 0.00 36.19 5.34
166 167 3.191669 TGAAATAGATAACGCCCACACG 58.808 45.455 0.00 0.00 39.50 4.49
167 168 4.213482 GGATGAAATAGATAACGCCCACAC 59.787 45.833 0.00 0.00 0.00 3.82
168 169 4.141597 TGGATGAAATAGATAACGCCCACA 60.142 41.667 0.00 0.00 0.00 4.17
169 170 4.213482 GTGGATGAAATAGATAACGCCCAC 59.787 45.833 0.00 0.00 34.43 4.61
170 171 4.141597 TGTGGATGAAATAGATAACGCCCA 60.142 41.667 0.00 0.00 0.00 5.36
171 172 4.213482 GTGTGGATGAAATAGATAACGCCC 59.787 45.833 0.00 0.00 0.00 6.13
172 173 4.814234 TGTGTGGATGAAATAGATAACGCC 59.186 41.667 0.00 0.00 0.00 5.68
173 174 5.293324 TGTGTGTGGATGAAATAGATAACGC 59.707 40.000 0.00 0.00 0.00 4.84
174 175 6.902224 TGTGTGTGGATGAAATAGATAACG 57.098 37.500 0.00 0.00 0.00 3.18
175 176 7.134815 GCATGTGTGTGGATGAAATAGATAAC 58.865 38.462 0.00 0.00 0.00 1.89
176 177 6.018016 CGCATGTGTGTGGATGAAATAGATAA 60.018 38.462 0.00 0.00 32.19 1.75
177 178 5.466393 CGCATGTGTGTGGATGAAATAGATA 59.534 40.000 0.00 0.00 32.19 1.98
178 179 4.274214 CGCATGTGTGTGGATGAAATAGAT 59.726 41.667 0.00 0.00 32.19 1.98
179 180 3.622612 CGCATGTGTGTGGATGAAATAGA 59.377 43.478 0.00 0.00 32.19 1.98
180 181 3.374988 ACGCATGTGTGTGGATGAAATAG 59.625 43.478 11.96 0.00 40.16 1.73
181 182 3.342719 ACGCATGTGTGTGGATGAAATA 58.657 40.909 11.96 0.00 40.16 1.40
182 183 2.161855 ACGCATGTGTGTGGATGAAAT 58.838 42.857 11.96 0.00 40.16 2.17
183 184 1.603456 ACGCATGTGTGTGGATGAAA 58.397 45.000 11.96 0.00 40.16 2.69
184 185 3.320823 ACGCATGTGTGTGGATGAA 57.679 47.368 11.96 0.00 40.16 2.57
195 196 2.257409 GATCCCCCTCACACGCATGT 62.257 60.000 0.00 0.00 40.80 3.21
196 197 1.524621 GATCCCCCTCACACGCATG 60.525 63.158 0.00 0.00 0.00 4.06
197 198 2.911143 GATCCCCCTCACACGCAT 59.089 61.111 0.00 0.00 0.00 4.73
198 199 3.770040 CGATCCCCCTCACACGCA 61.770 66.667 0.00 0.00 0.00 5.24
199 200 4.530857 CCGATCCCCCTCACACGC 62.531 72.222 0.00 0.00 0.00 5.34
200 201 3.849951 CCCGATCCCCCTCACACG 61.850 72.222 0.00 0.00 0.00 4.49
201 202 2.365105 TCCCGATCCCCCTCACAC 60.365 66.667 0.00 0.00 0.00 3.82
202 203 2.041922 CTCCCGATCCCCCTCACA 60.042 66.667 0.00 0.00 0.00 3.58
203 204 1.834822 CTCTCCCGATCCCCCTCAC 60.835 68.421 0.00 0.00 0.00 3.51
204 205 2.609339 CTCTCCCGATCCCCCTCA 59.391 66.667 0.00 0.00 0.00 3.86
205 206 2.203714 CCTCTCCCGATCCCCCTC 60.204 72.222 0.00 0.00 0.00 4.30
206 207 1.898190 TTTCCTCTCCCGATCCCCCT 61.898 60.000 0.00 0.00 0.00 4.79
207 208 0.986550 TTTTCCTCTCCCGATCCCCC 60.987 60.000 0.00 0.00 0.00 5.40
208 209 0.916809 TTTTTCCTCTCCCGATCCCC 59.083 55.000 0.00 0.00 0.00 4.81
225 226 3.304829 AGTAATGGCCACACACCTTTTT 58.695 40.909 8.16 0.00 0.00 1.94
226 227 2.957474 AGTAATGGCCACACACCTTTT 58.043 42.857 8.16 0.00 0.00 2.27
227 228 2.627699 CAAGTAATGGCCACACACCTTT 59.372 45.455 8.16 0.00 0.00 3.11
228 229 2.238521 CAAGTAATGGCCACACACCTT 58.761 47.619 8.16 3.12 0.00 3.50
229 230 1.144913 ACAAGTAATGGCCACACACCT 59.855 47.619 8.16 0.00 0.00 4.00
230 231 1.616159 ACAAGTAATGGCCACACACC 58.384 50.000 8.16 0.00 0.00 4.16
231 232 3.726291 AAACAAGTAATGGCCACACAC 57.274 42.857 8.16 6.30 0.00 3.82
232 233 3.739519 GCAAAACAAGTAATGGCCACACA 60.740 43.478 8.16 0.00 0.00 3.72
233 234 2.799978 GCAAAACAAGTAATGGCCACAC 59.200 45.455 8.16 9.80 0.00 3.82
234 235 2.224161 GGCAAAACAAGTAATGGCCACA 60.224 45.455 8.16 0.00 39.66 4.17
235 236 2.412870 GGCAAAACAAGTAATGGCCAC 58.587 47.619 8.16 0.00 39.66 5.01
236 237 2.829741 GGCAAAACAAGTAATGGCCA 57.170 45.000 8.56 8.56 39.66 5.36
238 239 2.224161 TGTGGGCAAAACAAGTAATGGC 60.224 45.455 3.97 3.97 37.60 4.40
239 240 3.389221 GTGTGGGCAAAACAAGTAATGG 58.611 45.455 0.00 0.00 0.00 3.16
240 241 3.049206 CGTGTGGGCAAAACAAGTAATG 58.951 45.455 0.00 0.00 0.00 1.90
241 242 2.691011 ACGTGTGGGCAAAACAAGTAAT 59.309 40.909 4.50 0.00 38.27 1.89
242 243 2.093106 ACGTGTGGGCAAAACAAGTAA 58.907 42.857 4.50 0.00 38.27 2.24
243 244 1.752683 ACGTGTGGGCAAAACAAGTA 58.247 45.000 4.50 0.00 38.27 2.24
244 245 1.673920 CTACGTGTGGGCAAAACAAGT 59.326 47.619 0.00 9.75 41.91 3.16
245 246 1.944024 TCTACGTGTGGGCAAAACAAG 59.056 47.619 0.00 0.00 33.85 3.16
246 247 2.039818 TCTACGTGTGGGCAAAACAA 57.960 45.000 0.00 0.00 0.00 2.83
247 248 2.264005 ATCTACGTGTGGGCAAAACA 57.736 45.000 0.00 0.00 0.00 2.83
248 249 5.049680 CCATATATCTACGTGTGGGCAAAAC 60.050 44.000 0.00 0.00 0.00 2.43
249 250 5.060506 CCATATATCTACGTGTGGGCAAAA 58.939 41.667 0.00 0.00 0.00 2.44
250 251 4.504165 CCCATATATCTACGTGTGGGCAAA 60.504 45.833 0.00 0.00 39.78 3.68
251 252 3.007506 CCCATATATCTACGTGTGGGCAA 59.992 47.826 0.00 0.00 39.78 4.52
252 253 2.565391 CCCATATATCTACGTGTGGGCA 59.435 50.000 0.00 0.00 39.78 5.36
253 254 3.247006 CCCATATATCTACGTGTGGGC 57.753 52.381 0.00 0.00 39.78 5.36
255 256 3.258372 ACAGCCCATATATCTACGTGTGG 59.742 47.826 0.00 0.00 0.00 4.17
256 257 4.521130 ACAGCCCATATATCTACGTGTG 57.479 45.455 0.00 0.00 0.00 3.82
257 258 5.304614 AGAAACAGCCCATATATCTACGTGT 59.695 40.000 0.00 0.00 0.00 4.49
258 259 5.784177 AGAAACAGCCCATATATCTACGTG 58.216 41.667 0.00 0.00 0.00 4.49
259 260 5.775701 AGAGAAACAGCCCATATATCTACGT 59.224 40.000 0.00 0.00 0.00 3.57
260 261 6.274157 AGAGAAACAGCCCATATATCTACG 57.726 41.667 0.00 0.00 0.00 3.51
263 264 9.326489 TGTATAAGAGAAACAGCCCATATATCT 57.674 33.333 0.00 0.00 0.00 1.98
264 265 9.372369 GTGTATAAGAGAAACAGCCCATATATC 57.628 37.037 0.00 0.00 0.00 1.63
265 266 8.322091 GGTGTATAAGAGAAACAGCCCATATAT 58.678 37.037 0.00 0.00 36.00 0.86
266 267 7.291416 TGGTGTATAAGAGAAACAGCCCATATA 59.709 37.037 0.00 0.00 40.10 0.86
267 268 6.101150 TGGTGTATAAGAGAAACAGCCCATAT 59.899 38.462 0.00 0.00 40.10 1.78
268 269 5.427157 TGGTGTATAAGAGAAACAGCCCATA 59.573 40.000 0.00 0.00 40.10 2.74
269 270 4.227300 TGGTGTATAAGAGAAACAGCCCAT 59.773 41.667 0.00 0.00 40.10 4.00
270 271 3.585289 TGGTGTATAAGAGAAACAGCCCA 59.415 43.478 0.00 0.00 40.10 5.36
271 272 3.939592 GTGGTGTATAAGAGAAACAGCCC 59.060 47.826 0.00 0.00 40.10 5.19
272 273 4.392138 GTGTGGTGTATAAGAGAAACAGCC 59.608 45.833 0.00 0.00 40.10 4.85
273 274 4.994852 TGTGTGGTGTATAAGAGAAACAGC 59.005 41.667 0.00 0.00 40.96 4.40
274 275 7.490962 TTTGTGTGGTGTATAAGAGAAACAG 57.509 36.000 0.00 0.00 0.00 3.16
275 276 7.867305 TTTTGTGTGGTGTATAAGAGAAACA 57.133 32.000 0.00 0.00 0.00 2.83
276 277 7.326063 GCATTTTGTGTGGTGTATAAGAGAAAC 59.674 37.037 0.00 0.00 0.00 2.78
277 278 7.367285 GCATTTTGTGTGGTGTATAAGAGAAA 58.633 34.615 0.00 0.00 0.00 2.52
278 279 6.348132 CGCATTTTGTGTGGTGTATAAGAGAA 60.348 38.462 0.00 0.00 34.65 2.87
279 280 5.121611 CGCATTTTGTGTGGTGTATAAGAGA 59.878 40.000 0.00 0.00 34.65 3.10
280 281 5.106712 ACGCATTTTGTGTGGTGTATAAGAG 60.107 40.000 0.00 0.00 39.97 2.85
281 282 4.757657 ACGCATTTTGTGTGGTGTATAAGA 59.242 37.500 0.00 0.00 39.97 2.10
282 283 5.041951 ACGCATTTTGTGTGGTGTATAAG 57.958 39.130 0.00 0.00 39.97 1.73
292 293 1.002468 GTCTGCTCACGCATTTTGTGT 60.002 47.619 0.00 0.00 46.74 3.72
293 294 1.664016 GGTCTGCTCACGCATTTTGTG 60.664 52.381 0.00 0.00 46.74 3.33
294 295 0.593128 GGTCTGCTCACGCATTTTGT 59.407 50.000 0.00 0.00 46.74 2.83
295 296 0.109597 GGGTCTGCTCACGCATTTTG 60.110 55.000 0.00 0.00 46.74 2.44
296 297 0.250901 AGGGTCTGCTCACGCATTTT 60.251 50.000 5.66 0.00 46.74 1.82
297 298 0.250901 AAGGGTCTGCTCACGCATTT 60.251 50.000 5.66 0.00 46.74 2.32
298 299 0.613260 TAAGGGTCTGCTCACGCATT 59.387 50.000 5.66 1.25 46.74 3.56
299 300 0.613260 TTAAGGGTCTGCTCACGCAT 59.387 50.000 5.66 0.00 46.74 4.73
300 301 0.320421 GTTAAGGGTCTGCTCACGCA 60.320 55.000 5.66 0.00 45.60 5.24
301 302 1.352156 CGTTAAGGGTCTGCTCACGC 61.352 60.000 0.00 0.00 0.00 5.34
302 303 1.352156 GCGTTAAGGGTCTGCTCACG 61.352 60.000 0.00 0.00 0.00 4.35
303 304 1.019805 GGCGTTAAGGGTCTGCTCAC 61.020 60.000 0.00 0.00 0.00 3.51
304 305 1.295423 GGCGTTAAGGGTCTGCTCA 59.705 57.895 0.00 0.00 0.00 4.26
305 306 1.449778 GGGCGTTAAGGGTCTGCTC 60.450 63.158 0.00 0.00 0.00 4.26
306 307 2.221299 TGGGCGTTAAGGGTCTGCT 61.221 57.895 0.00 0.00 0.00 4.24
307 308 2.038837 GTGGGCGTTAAGGGTCTGC 61.039 63.158 0.00 0.00 0.00 4.26
308 309 0.953960 GTGTGGGCGTTAAGGGTCTG 60.954 60.000 0.00 0.00 0.00 3.51
309 310 1.373812 GTGTGGGCGTTAAGGGTCT 59.626 57.895 0.00 0.00 0.00 3.85
310 311 2.030958 CGTGTGGGCGTTAAGGGTC 61.031 63.158 0.00 0.00 0.00 4.46
311 312 2.031465 CGTGTGGGCGTTAAGGGT 59.969 61.111 0.00 0.00 0.00 4.34
312 313 2.031465 ACGTGTGGGCGTTAAGGG 59.969 61.111 0.00 0.00 43.04 3.95
313 314 1.595929 ACACGTGTGGGCGTTAAGG 60.596 57.895 22.71 0.00 43.83 2.69
314 315 0.876777 TCACACGTGTGGGCGTTAAG 60.877 55.000 39.88 17.96 45.65 1.85
315 316 1.143401 TCACACGTGTGGGCGTTAA 59.857 52.632 39.88 21.78 45.65 2.01
316 317 1.592131 GTCACACGTGTGGGCGTTA 60.592 57.895 39.88 22.46 45.65 3.18
317 318 2.893404 GTCACACGTGTGGGCGTT 60.893 61.111 39.88 7.83 45.65 4.84
318 319 4.150203 TGTCACACGTGTGGGCGT 62.150 61.111 39.88 8.62 45.65 5.68
319 320 3.636043 GTGTCACACGTGTGGGCG 61.636 66.667 39.88 21.10 45.65 6.13
320 321 0.531090 TAAGTGTCACACGTGTGGGC 60.531 55.000 39.88 32.25 45.65 5.36
321 322 2.066262 GATAAGTGTCACACGTGTGGG 58.934 52.381 39.88 22.15 45.65 4.61
322 323 2.731451 CTGATAAGTGTCACACGTGTGG 59.269 50.000 39.88 25.18 45.65 4.17
323 324 2.155732 GCTGATAAGTGTCACACGTGTG 59.844 50.000 37.04 37.04 46.91 3.82
324 325 2.404215 GCTGATAAGTGTCACACGTGT 58.596 47.619 17.22 17.22 39.64 4.49
325 326 1.386748 CGCTGATAAGTGTCACACGTG 59.613 52.381 15.48 15.48 39.64 4.49
326 327 1.000607 ACGCTGATAAGTGTCACACGT 60.001 47.619 1.22 1.06 39.64 4.49
327 328 1.649171 GACGCTGATAAGTGTCACACG 59.351 52.381 17.53 0.00 45.58 4.49
332 333 2.415512 GGTTTGGACGCTGATAAGTGTC 59.584 50.000 14.60 14.60 45.55 3.67
333 334 2.038557 AGGTTTGGACGCTGATAAGTGT 59.961 45.455 0.00 0.00 34.95 3.55
334 335 2.699954 AGGTTTGGACGCTGATAAGTG 58.300 47.619 0.00 0.00 0.00 3.16
335 336 4.755266 ATAGGTTTGGACGCTGATAAGT 57.245 40.909 0.00 0.00 0.00 2.24
336 337 8.873830 CATATAATAGGTTTGGACGCTGATAAG 58.126 37.037 0.00 0.00 0.00 1.73
337 338 8.590204 TCATATAATAGGTTTGGACGCTGATAA 58.410 33.333 0.00 0.00 0.00 1.75
338 339 8.129496 TCATATAATAGGTTTGGACGCTGATA 57.871 34.615 0.00 0.00 0.00 2.15
339 340 7.004555 TCATATAATAGGTTTGGACGCTGAT 57.995 36.000 0.00 0.00 0.00 2.90
340 341 6.413783 TCATATAATAGGTTTGGACGCTGA 57.586 37.500 0.00 0.00 0.00 4.26
341 342 7.490962 TTTCATATAATAGGTTTGGACGCTG 57.509 36.000 0.00 0.00 0.00 5.18
342 343 9.787435 TTATTTCATATAATAGGTTTGGACGCT 57.213 29.630 0.00 0.00 0.00 5.07
357 358 9.466497 GGAGCCAAAGGATGATTATTTCATATA 57.534 33.333 0.00 0.00 45.29 0.86
358 359 7.951806 TGGAGCCAAAGGATGATTATTTCATAT 59.048 33.333 0.00 0.00 45.29 1.78
359 360 7.296856 TGGAGCCAAAGGATGATTATTTCATA 58.703 34.615 0.00 0.00 45.29 2.15
360 361 6.612456 TTGGAGCCAAAGGATGATTATTTCAT 59.388 34.615 0.00 0.00 39.21 2.57
361 362 5.517924 TGGAGCCAAAGGATGATTATTTCA 58.482 37.500 0.00 0.00 39.12 2.69
362 363 6.469782 TTGGAGCCAAAGGATGATTATTTC 57.530 37.500 0.00 0.00 32.44 2.17
363 364 6.872585 TTTGGAGCCAAAGGATGATTATTT 57.127 33.333 10.49 0.00 40.51 1.40
364 365 6.669154 TCTTTTGGAGCCAAAGGATGATTATT 59.331 34.615 19.15 0.00 43.68 1.40
365 366 6.197168 TCTTTTGGAGCCAAAGGATGATTAT 58.803 36.000 19.15 0.00 43.68 1.28
366 367 5.579047 TCTTTTGGAGCCAAAGGATGATTA 58.421 37.500 19.15 1.66 43.68 1.75
367 368 4.419282 TCTTTTGGAGCCAAAGGATGATT 58.581 39.130 19.15 0.00 43.68 2.57
368 369 4.021916 CTCTTTTGGAGCCAAAGGATGAT 58.978 43.478 22.05 0.00 46.03 2.45
369 370 3.074390 TCTCTTTTGGAGCCAAAGGATGA 59.926 43.478 22.05 18.26 46.03 2.92
370 371 3.192212 GTCTCTTTTGGAGCCAAAGGATG 59.808 47.826 22.05 16.81 46.03 3.51
371 372 3.425659 GTCTCTTTTGGAGCCAAAGGAT 58.574 45.455 22.05 0.00 46.03 3.24
372 373 2.489073 GGTCTCTTTTGGAGCCAAAGGA 60.489 50.000 20.97 20.97 45.40 3.36
373 374 1.889170 GGTCTCTTTTGGAGCCAAAGG 59.111 52.381 15.60 15.60 45.15 3.11
374 375 1.537202 CGGTCTCTTTTGGAGCCAAAG 59.463 52.381 13.78 9.17 45.15 2.77
375 376 1.142060 TCGGTCTCTTTTGGAGCCAAA 59.858 47.619 10.49 10.49 43.23 3.28
376 377 0.762418 TCGGTCTCTTTTGGAGCCAA 59.238 50.000 0.00 0.00 41.60 4.52
377 378 0.762418 TTCGGTCTCTTTTGGAGCCA 59.238 50.000 0.00 0.00 41.60 4.75
378 379 1.157585 GTTCGGTCTCTTTTGGAGCC 58.842 55.000 0.00 0.00 41.60 4.70
379 380 1.531578 GTGTTCGGTCTCTTTTGGAGC 59.468 52.381 0.00 0.00 41.60 4.70
380 381 2.802816 CTGTGTTCGGTCTCTTTTGGAG 59.197 50.000 0.00 0.00 43.12 3.86
381 382 2.833794 CTGTGTTCGGTCTCTTTTGGA 58.166 47.619 0.00 0.00 0.00 3.53
382 383 1.264288 GCTGTGTTCGGTCTCTTTTGG 59.736 52.381 0.00 0.00 0.00 3.28
383 384 1.070577 CGCTGTGTTCGGTCTCTTTTG 60.071 52.381 0.00 0.00 0.00 2.44
384 385 1.217882 CGCTGTGTTCGGTCTCTTTT 58.782 50.000 0.00 0.00 0.00 2.27
385 386 0.600255 CCGCTGTGTTCGGTCTCTTT 60.600 55.000 0.00 0.00 41.85 2.52
386 387 1.006102 CCGCTGTGTTCGGTCTCTT 60.006 57.895 0.00 0.00 41.85 2.85
387 388 2.651361 CCGCTGTGTTCGGTCTCT 59.349 61.111 0.00 0.00 41.85 3.10
393 394 4.012895 GTGTGGCCGCTGTGTTCG 62.013 66.667 18.96 0.00 0.00 3.95
394 395 4.012895 CGTGTGGCCGCTGTGTTC 62.013 66.667 18.96 0.51 0.00 3.18
402 403 2.357517 AGAAGAAGCGTGTGGCCG 60.358 61.111 0.00 0.00 45.17 6.13
403 404 2.035442 GGAGAAGAAGCGTGTGGCC 61.035 63.158 0.00 0.00 45.17 5.36
404 405 0.603975 AAGGAGAAGAAGCGTGTGGC 60.604 55.000 0.00 0.00 44.05 5.01
405 406 1.001406 AGAAGGAGAAGAAGCGTGTGG 59.999 52.381 0.00 0.00 0.00 4.17
406 407 2.447244 AGAAGGAGAAGAAGCGTGTG 57.553 50.000 0.00 0.00 0.00 3.82
407 408 2.630580 AGAAGAAGGAGAAGAAGCGTGT 59.369 45.455 0.00 0.00 0.00 4.49
408 409 3.311486 AGAAGAAGGAGAAGAAGCGTG 57.689 47.619 0.00 0.00 0.00 5.34
409 410 3.576550 AGAAGAAGAAGGAGAAGAAGCGT 59.423 43.478 0.00 0.00 0.00 5.07
410 411 4.186856 AGAAGAAGAAGGAGAAGAAGCG 57.813 45.455 0.00 0.00 0.00 4.68
411 412 5.793817 AGAAGAAGAAGAAGGAGAAGAAGC 58.206 41.667 0.00 0.00 0.00 3.86
412 413 7.670364 AGAAGAAGAAGAAGAAGGAGAAGAAG 58.330 38.462 0.00 0.00 0.00 2.85
413 414 7.610580 AGAAGAAGAAGAAGAAGGAGAAGAA 57.389 36.000 0.00 0.00 0.00 2.52
414 415 7.508977 AGAAGAAGAAGAAGAAGAAGGAGAAGA 59.491 37.037 0.00 0.00 0.00 2.87
415 416 7.670364 AGAAGAAGAAGAAGAAGAAGGAGAAG 58.330 38.462 0.00 0.00 0.00 2.85
416 417 7.610580 AGAAGAAGAAGAAGAAGAAGGAGAA 57.389 36.000 0.00 0.00 0.00 2.87
417 418 7.508977 AGAAGAAGAAGAAGAAGAAGAAGGAGA 59.491 37.037 0.00 0.00 0.00 3.71
418 419 7.670364 AGAAGAAGAAGAAGAAGAAGAAGGAG 58.330 38.462 0.00 0.00 0.00 3.69
419 420 7.610580 AGAAGAAGAAGAAGAAGAAGAAGGA 57.389 36.000 0.00 0.00 0.00 3.36
420 421 8.150296 AGAAGAAGAAGAAGAAGAAGAAGAAGG 58.850 37.037 0.00 0.00 0.00 3.46
421 422 8.981647 CAGAAGAAGAAGAAGAAGAAGAAGAAG 58.018 37.037 0.00 0.00 0.00 2.85
422 423 8.700051 TCAGAAGAAGAAGAAGAAGAAGAAGAA 58.300 33.333 0.00 0.00 0.00 2.52
423 424 8.243961 TCAGAAGAAGAAGAAGAAGAAGAAGA 57.756 34.615 0.00 0.00 0.00 2.87
486 490 2.518949 CACCTGCGATAACAATGTTGC 58.481 47.619 9.15 4.44 0.00 4.17
515 519 8.099364 TCTGGAAACTTGTATTTTCTGATCAC 57.901 34.615 0.00 0.00 34.06 3.06
546 550 2.908073 CGGCCTCTGTGTTGTTGCC 61.908 63.158 0.00 0.00 35.55 4.52
565 569 1.280142 CGTCTAGGCCGAGACATCG 59.720 63.158 35.69 23.39 45.23 3.84
566 570 0.818445 TCCGTCTAGGCCGAGACATC 60.818 60.000 35.69 16.97 45.23 3.06
569 573 1.748122 TGTCCGTCTAGGCCGAGAC 60.748 63.158 30.21 30.21 42.13 3.36
581 585 3.852286 TGCTACAAAATATCGTGTCCGT 58.148 40.909 0.00 0.00 35.01 4.69
583 587 5.986135 AGAGATGCTACAAAATATCGTGTCC 59.014 40.000 0.00 0.00 0.00 4.02
601 605 5.551233 TGACTAAAACAGGGACAAGAGATG 58.449 41.667 0.00 0.00 0.00 2.90
602 606 5.799213 CTGACTAAAACAGGGACAAGAGAT 58.201 41.667 0.00 0.00 0.00 2.75
603 607 4.503296 GCTGACTAAAACAGGGACAAGAGA 60.503 45.833 0.00 0.00 36.09 3.10
604 608 3.748568 GCTGACTAAAACAGGGACAAGAG 59.251 47.826 0.00 0.00 36.09 2.85
615 619 2.285488 GCTCCGCTATGCTGACTAAAAC 59.715 50.000 0.00 0.00 0.00 2.43
621 625 2.266554 GATATGCTCCGCTATGCTGAC 58.733 52.381 0.00 0.00 0.00 3.51
640 658 2.655407 TGCAAAGGGGTAATAAAGGGGA 59.345 45.455 0.00 0.00 0.00 4.81
643 661 4.503910 GCTTTGCAAAGGGGTAATAAAGG 58.496 43.478 34.02 10.89 36.53 3.11
645 663 3.056465 CGGCTTTGCAAAGGGGTAATAAA 60.056 43.478 34.02 0.11 36.53 1.40
647 665 2.096248 CGGCTTTGCAAAGGGGTAATA 58.904 47.619 34.02 1.40 36.53 0.98
648 666 0.894835 CGGCTTTGCAAAGGGGTAAT 59.105 50.000 34.02 0.00 36.53 1.89
665 690 2.969238 GCTGGCCATCGATGACGG 60.969 66.667 26.86 22.06 40.21 4.79
698 723 4.683334 GGTGACGGCTTTGCGTGC 62.683 66.667 0.00 0.00 0.00 5.34
714 739 7.530010 AGTAAAAATCAAATCATCACAGTCGG 58.470 34.615 0.00 0.00 0.00 4.79
715 740 7.693951 GGAGTAAAAATCAAATCATCACAGTCG 59.306 37.037 0.00 0.00 0.00 4.18
716 741 8.514594 TGGAGTAAAAATCAAATCATCACAGTC 58.485 33.333 0.00 0.00 0.00 3.51
717 742 8.408043 TGGAGTAAAAATCAAATCATCACAGT 57.592 30.769 0.00 0.00 0.00 3.55
718 743 9.132521 GTTGGAGTAAAAATCAAATCATCACAG 57.867 33.333 0.00 0.00 0.00 3.66
720 745 9.474920 TTGTTGGAGTAAAAATCAAATCATCAC 57.525 29.630 0.00 0.00 0.00 3.06
727 765 6.045955 GGCACTTGTTGGAGTAAAAATCAAA 58.954 36.000 0.00 0.00 0.00 2.69
739 777 2.485795 GCGTTGGGCACTTGTTGGA 61.486 57.895 0.00 0.00 42.87 3.53
740 778 2.027460 GCGTTGGGCACTTGTTGG 59.973 61.111 0.00 0.00 42.87 3.77
767 820 2.586648 TTTGCTCCCCCTTCTTCTTC 57.413 50.000 0.00 0.00 0.00 2.87
787 840 2.350498 CGAATTCGGCGACCTGTATTTT 59.650 45.455 20.16 0.00 35.37 1.82
791 851 0.179156 GACGAATTCGGCGACCTGTA 60.179 55.000 29.79 0.00 44.95 2.74
792 852 1.445582 GACGAATTCGGCGACCTGT 60.446 57.895 29.79 5.97 44.95 4.00
793 853 3.384927 GACGAATTCGGCGACCTG 58.615 61.111 29.79 2.18 44.95 4.00
802 862 4.204891 CGCGCCACCGACGAATTC 62.205 66.667 0.00 0.00 36.56 2.17
828 888 1.305046 GGGTCAGACGAGGGAGGAA 60.305 63.158 0.00 0.00 0.00 3.36
929 1015 1.137282 GCTACTACCAGACTTCCCTGC 59.863 57.143 0.00 0.00 32.97 4.85
963 1053 2.786777 TCTCGCGCTCCTTATATACCA 58.213 47.619 5.56 0.00 0.00 3.25
973 1063 1.080839 GATCTGGATCTCGCGCTCC 60.081 63.158 5.56 6.09 35.04 4.70
1014 1104 4.459089 GTGAGGGCGAGCAGGGTC 62.459 72.222 0.00 0.00 0.00 4.46
1138 1230 1.797025 CGGAAAGATTAGGGATCCGC 58.203 55.000 5.45 0.00 45.41 5.54
1152 1244 1.352114 CGGTGAGCGATTAACGGAAA 58.648 50.000 0.00 0.00 42.83 3.13
1153 1245 1.079875 GCGGTGAGCGATTAACGGAA 61.080 55.000 8.74 0.00 42.83 4.30
1192 1284 5.499047 CCGGAAGAAACTAATTAATCACGC 58.501 41.667 0.00 0.00 0.00 5.34
1193 1285 5.499047 GCCGGAAGAAACTAATTAATCACG 58.501 41.667 5.05 0.00 0.00 4.35
1221 1344 1.254026 CAACACGGGGTCAGACTAGA 58.746 55.000 0.00 0.00 0.00 2.43
1260 1384 0.246635 CCCGAATCGACCACTCAGTT 59.753 55.000 3.36 0.00 0.00 3.16
1262 1386 0.179134 GACCCGAATCGACCACTCAG 60.179 60.000 3.36 0.00 0.00 3.35
1269 1393 1.411493 GAACAGCGACCCGAATCGAC 61.411 60.000 3.36 4.16 45.13 4.20
1298 1423 3.661025 ATTAAACAGCGCCGCGTGC 62.661 57.895 15.34 12.13 39.59 5.34
1306 1431 2.276540 CAGACGAGACGATTAAACAGCG 59.723 50.000 0.00 0.00 41.30 5.18
1339 1464 6.123651 AGAGGACACATTCTAGTACTACCTG 58.876 44.000 8.68 5.07 0.00 4.00
1342 1467 7.442062 GGTCTAGAGGACACATTCTAGTACTAC 59.558 44.444 0.00 0.92 46.16 2.73
1344 1469 6.159046 AGGTCTAGAGGACACATTCTAGTACT 59.841 42.308 0.00 0.00 46.16 2.73
1345 1470 6.261381 CAGGTCTAGAGGACACATTCTAGTAC 59.739 46.154 0.00 0.00 46.16 2.73
1364 1489 0.987294 CTCCACCCATGTTCAGGTCT 59.013 55.000 0.00 0.00 32.72 3.85
1370 1495 2.945668 GCAATCTACTCCACCCATGTTC 59.054 50.000 0.00 0.00 0.00 3.18
1405 1530 2.926200 CGGCTGTAAGAAGACATGTCTG 59.074 50.000 28.52 14.96 40.36 3.51
1414 1539 3.484229 CGAAGCAAATCGGCTGTAAGAAG 60.484 47.826 0.00 0.00 45.07 2.85
1435 1562 1.406219 CGACTCTGCATCGACCAACG 61.406 60.000 1.97 0.00 42.25 4.10
1436 1563 1.078759 CCGACTCTGCATCGACCAAC 61.079 60.000 9.69 0.00 42.25 3.77
1446 1573 2.544267 GCAATACAATACCCGACTCTGC 59.456 50.000 0.00 0.00 0.00 4.26
1454 1581 1.512156 CGGCCGGCAATACAATACCC 61.512 60.000 30.85 4.63 0.00 3.69
1469 1596 1.197721 CACTCTTGTTTCATCACGGCC 59.802 52.381 0.00 0.00 0.00 6.13
1479 1606 0.032952 TAGCGACGGCACTCTTGTTT 59.967 50.000 0.00 0.00 43.41 2.83
1480 1607 0.246635 ATAGCGACGGCACTCTTGTT 59.753 50.000 0.00 0.00 43.41 2.83
1488 1615 4.336581 GCATACATAGCGACGGCA 57.663 55.556 0.00 0.00 43.41 5.69
1496 1623 1.953559 AACAGGCCACGCATACATAG 58.046 50.000 5.01 0.00 0.00 2.23
1505 1637 0.040425 GTGCACTTTAACAGGCCACG 60.040 55.000 10.32 0.00 0.00 4.94
1509 1641 0.040425 CGTGGTGCACTTTAACAGGC 60.040 55.000 17.98 0.00 31.34 4.85
1512 1644 0.464735 AGCCGTGGTGCACTTTAACA 60.465 50.000 17.98 2.31 31.34 2.41
1513 1645 1.463444 CTAGCCGTGGTGCACTTTAAC 59.537 52.381 17.98 9.33 31.34 2.01
1516 1648 1.966451 GCTAGCCGTGGTGCACTTT 60.966 57.895 17.98 0.00 31.34 2.66
1517 1649 2.358737 GCTAGCCGTGGTGCACTT 60.359 61.111 17.98 0.00 31.34 3.16
1518 1650 4.394712 GGCTAGCCGTGGTGCACT 62.395 66.667 20.16 0.00 31.34 4.40
1519 1651 3.976701 ATGGCTAGCCGTGGTGCAC 62.977 63.158 27.94 8.80 39.42 4.57
1520 1652 3.680620 GATGGCTAGCCGTGGTGCA 62.681 63.158 33.17 11.96 39.42 4.57
1521 1653 2.897350 GATGGCTAGCCGTGGTGC 60.897 66.667 33.17 14.71 39.42 5.01
1522 1654 2.586079 CGATGGCTAGCCGTGGTG 60.586 66.667 33.17 17.81 39.42 4.17
1523 1655 3.075005 ACGATGGCTAGCCGTGGT 61.075 61.111 31.42 31.42 38.86 4.16
1533 1665 0.319900 ACTGTGAGTGTGACGATGGC 60.320 55.000 0.00 0.00 0.00 4.40
1536 1668 0.952280 ACGACTGTGAGTGTGACGAT 59.048 50.000 0.00 0.00 0.00 3.73
1540 1672 2.021457 TCAGAACGACTGTGAGTGTGA 58.979 47.619 12.23 0.00 45.86 3.58
1541 1673 2.492019 TCAGAACGACTGTGAGTGTG 57.508 50.000 12.23 0.00 45.86 3.82
1542 1674 2.350868 CGATCAGAACGACTGTGAGTGT 60.351 50.000 12.23 0.00 45.86 3.55
1543 1675 2.095718 TCGATCAGAACGACTGTGAGTG 60.096 50.000 0.00 1.31 45.86 3.51
1544 1676 2.152016 TCGATCAGAACGACTGTGAGT 58.848 47.619 0.00 0.00 45.86 3.41
1545 1677 2.902065 TCGATCAGAACGACTGTGAG 57.098 50.000 0.00 6.76 45.86 3.51
1565 1697 3.379372 CCTTAGGACAGCAAACATGGATG 59.621 47.826 0.00 0.00 0.00 3.51
1569 1701 2.094675 CCCCTTAGGACAGCAAACATG 58.905 52.381 0.00 0.00 38.24 3.21
1586 1718 1.561542 AGACATCATTCCACTGTCCCC 59.438 52.381 0.00 0.00 40.08 4.81
1610 1742 8.045720 ACCAGATTCTAATCTAAATAGGGCAA 57.954 34.615 4.93 0.00 43.65 4.52
1645 1777 0.178981 ATGCTGGCCAGAACACTTGT 60.179 50.000 37.21 6.70 0.00 3.16
1651 1783 1.602311 CCTGATATGCTGGCCAGAAC 58.398 55.000 37.21 19.97 0.00 3.01
1657 1789 1.879796 GCACTACCCTGATATGCTGGC 60.880 57.143 0.00 0.00 34.47 4.85
1671 1803 4.992381 ACGAAATCAAGTTCAGCACTAC 57.008 40.909 0.00 0.00 32.94 2.73
1676 1808 3.125316 CCAGGTACGAAATCAAGTTCAGC 59.875 47.826 0.00 0.00 0.00 4.26
1677 1809 3.125316 GCCAGGTACGAAATCAAGTTCAG 59.875 47.826 0.00 0.00 0.00 3.02
1685 1817 4.282703 TCCCTAATAGCCAGGTACGAAATC 59.717 45.833 0.00 0.00 0.00 2.17
1710 1843 8.613060 TGAGATAAATAAGGCAATCATCTGAC 57.387 34.615 0.00 0.00 0.00 3.51
1761 1923 1.228245 TGAACCTGCCAGCCAGAAC 60.228 57.895 0.00 0.00 44.64 3.01
1790 1952 2.030540 CAGGTGATGGCTGTTTCAGTTG 60.031 50.000 0.00 0.00 33.43 3.16
1802 1964 0.037303 ACCAAGAGTGCAGGTGATGG 59.963 55.000 0.00 0.00 33.57 3.51
1855 2020 0.030369 AACCGTCACTCGTCAGTCAC 59.970 55.000 0.00 0.00 37.94 3.67
1872 2037 2.029918 GGGTTCTCTGCCATCAAACAAC 60.030 50.000 0.00 0.00 0.00 3.32
1928 2093 1.608590 CAGTCGGTTGCCAGAAACAAT 59.391 47.619 0.00 0.00 0.00 2.71
1998 2163 1.664321 CTCGTGGGAAGGACCGGTAG 61.664 65.000 7.34 0.00 40.11 3.18
2304 2477 1.554160 AGATCTGCTGTCAACTCTGGG 59.446 52.381 0.00 0.00 0.00 4.45
2433 2606 4.134563 ACTTCTTGCGTGAAACAAGGTAT 58.865 39.130 3.87 0.00 43.79 2.73
2442 2615 4.820897 AGATGACATACTTCTTGCGTGAA 58.179 39.130 0.00 0.00 30.37 3.18
2466 2639 2.019984 GGGAGGCAGTTGTCATCAATC 58.980 52.381 0.00 0.00 35.92 2.67
2472 2645 1.993701 TTGCTGGGAGGCAGTTGTCA 61.994 55.000 0.00 0.00 43.39 3.58
2502 2675 1.012086 CAGCATCAACAGTCATCCCG 58.988 55.000 0.00 0.00 0.00 5.14
2553 2726 5.163301 TGTGTTGAAGAAGAAAGGAGTAGCT 60.163 40.000 0.00 0.00 0.00 3.32
2691 2864 1.425031 CACATGCGTCATTGGGTCG 59.575 57.895 0.00 0.00 0.00 4.79
2703 2876 1.210155 GTTCCGCTTCACCACATGC 59.790 57.895 0.00 0.00 0.00 4.06
2709 2882 3.423154 CGCTGGTTCCGCTTCACC 61.423 66.667 4.78 0.00 0.00 4.02
2724 2897 0.179225 CCACATAGTTCGTGTTGCGC 60.179 55.000 0.00 0.00 41.07 6.09
2763 2936 3.195698 GGGAACATCGCACCGAGC 61.196 66.667 0.00 0.00 39.91 5.03
2784 2957 3.181488 TGAATGCAACATTTATCCCGCTG 60.181 43.478 0.00 0.00 0.00 5.18
2826 2999 1.379916 CAGGCCAGGGAACATCACA 59.620 57.895 5.01 0.00 0.00 3.58
2850 3023 2.034066 TGCTTCCCTTCCTTGCGG 59.966 61.111 0.00 0.00 0.00 5.69
2949 3122 1.204704 CTCATCACGTAAGGCAGTCCA 59.795 52.381 0.00 0.00 46.39 4.02
2961 3134 2.858941 CTCTGCATCACTTCTCATCACG 59.141 50.000 0.00 0.00 0.00 4.35
3069 3242 0.179161 CAGTAACTGCGGTCCTCGAG 60.179 60.000 5.13 5.13 42.43 4.04
3072 3245 0.456312 CGACAGTAACTGCGGTCCTC 60.456 60.000 0.00 0.00 34.37 3.71
3100 3273 1.123928 ACGCCAGCTAGCTCCTTAAT 58.876 50.000 16.15 0.00 0.00 1.40
3118 3291 1.860484 GCCAGCTTCTGCCTCACAAC 61.860 60.000 0.00 0.00 40.80 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.