Multiple sequence alignment - TraesCS2A01G498300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G498300 chr2A 100.000 2965 0 0 1 2965 728648017 728650981 0.000000e+00 5476
1 TraesCS2A01G498300 chr2A 96.461 1667 38 8 642 2305 728728521 728726873 0.000000e+00 2732
2 TraesCS2A01G498300 chr2A 95.198 1541 44 15 571 2099 728617181 728618703 0.000000e+00 2409
3 TraesCS2A01G498300 chr2A 95.341 279 13 0 2687 2965 728726877 728726599 7.540000e-121 444
4 TraesCS2A01G498300 chr2D 94.083 2011 89 15 303 2305 593856904 593858892 0.000000e+00 3027
5 TraesCS2A01G498300 chr2D 93.097 1724 75 22 390 2103 593850867 593852556 0.000000e+00 2484
6 TraesCS2A01G498300 chr2D 91.816 1735 75 32 609 2305 593919740 593918035 0.000000e+00 2355
7 TraesCS2A01G498300 chr2D 92.000 1675 68 31 669 2305 593899121 593897475 0.000000e+00 2290
8 TraesCS2A01G498300 chr2D 84.681 1397 123 53 765 2127 594068856 594067517 0.000000e+00 1310
9 TraesCS2A01G498300 chr2D 97.931 290 6 0 1 290 593856534 593856823 1.230000e-138 503
10 TraesCS2A01G498300 chr2D 95.000 280 13 1 2687 2965 593858888 593859167 3.510000e-119 438
11 TraesCS2A01G498300 chr2D 95.000 280 13 1 2687 2965 593894902 593894623 3.510000e-119 438
12 TraesCS2A01G498300 chr2D 88.968 281 24 7 14 292 593850372 593850647 1.020000e-89 340
13 TraesCS2A01G498300 chr2D 88.153 287 27 4 390 675 593904903 593904623 4.740000e-88 335
14 TraesCS2A01G498300 chr2D 91.339 127 11 0 2179 2305 593895024 593894898 1.090000e-39 174
15 TraesCS2A01G498300 chr2D 85.207 169 8 1 2687 2838 593897479 593897311 1.100000e-34 158
16 TraesCS2A01G498300 chr2D 85.207 169 8 1 2687 2838 593918039 593917871 1.100000e-34 158
17 TraesCS2A01G498300 chr2B 89.392 1480 90 41 657 2103 720923954 720922509 0.000000e+00 1801
18 TraesCS2A01G498300 chr2B 94.068 944 41 4 1363 2304 720913972 720913042 0.000000e+00 1419
19 TraesCS2A01G498300 chr2B 93.962 944 42 4 1363 2304 720817756 720818686 0.000000e+00 1413
20 TraesCS2A01G498300 chr2B 84.696 1431 133 57 765 2154 721111408 721110023 0.000000e+00 1351
21 TraesCS2A01G498300 chr2B 93.208 854 36 7 391 1242 720816804 720817637 0.000000e+00 1236
22 TraesCS2A01G498300 chr2B 93.208 854 36 7 391 1242 720914924 720914091 0.000000e+00 1236
23 TraesCS2A01G498300 chr2B 95.641 390 16 1 2301 2689 450662724 450663113 2.510000e-175 625
24 TraesCS2A01G498300 chr2B 95.141 391 18 1 2301 2690 615055768 615055378 1.510000e-172 616
25 TraesCS2A01G498300 chr2B 94.373 391 21 1 2301 2690 80917902 80917512 1.520000e-167 599
26 TraesCS2A01G498300 chr2B 95.588 272 11 1 2687 2958 720818683 720818953 4.540000e-118 435
27 TraesCS2A01G498300 chr2B 95.588 272 11 1 2687 2958 720913045 720912775 4.540000e-118 435
28 TraesCS2A01G498300 chr2B 92.910 268 15 4 25 291 720813213 720813477 1.290000e-103 387
29 TraesCS2A01G498300 chr2B 92.537 268 16 4 25 291 720918517 720918253 6.000000e-102 381
30 TraesCS2A01G498300 chr2B 91.176 272 15 6 25 291 720816312 720816579 7.810000e-96 361
31 TraesCS2A01G498300 chr2B 91.176 272 15 6 25 291 720915416 720915149 7.810000e-96 361
32 TraesCS2A01G498300 chr5A 96.923 390 11 1 2301 2689 50424441 50424830 0.000000e+00 652
33 TraesCS2A01G498300 chr5A 95.897 390 15 1 2301 2689 380227698 380227309 5.390000e-177 630
34 TraesCS2A01G498300 chr7D 96.164 391 12 2 2303 2690 474171645 474172035 1.160000e-178 636
35 TraesCS2A01G498300 chr7B 94.629 391 20 1 2301 2690 465432471 465432861 3.270000e-169 604
36 TraesCS2A01G498300 chr7B 94.373 391 20 2 2301 2690 567344465 567344076 1.520000e-167 599
37 TraesCS2A01G498300 chr6B 94.629 391 19 2 2301 2690 527450903 527450514 3.270000e-169 604
38 TraesCS2A01G498300 chrUn 95.588 272 11 1 2687 2958 478471806 478472076 4.540000e-118 435
39 TraesCS2A01G498300 chrUn 94.737 133 5 1 2174 2304 478471677 478471809 3.870000e-49 206


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G498300 chr2A 728648017 728650981 2964 False 5476.000000 5476 100.0000 1 2965 1 chr2A.!!$F2 2964
1 TraesCS2A01G498300 chr2A 728617181 728618703 1522 False 2409.000000 2409 95.1980 571 2099 1 chr2A.!!$F1 1528
2 TraesCS2A01G498300 chr2A 728726599 728728521 1922 True 1588.000000 2732 95.9010 642 2965 2 chr2A.!!$R1 2323
3 TraesCS2A01G498300 chr2D 593850372 593859167 8795 False 1358.400000 3027 93.8158 1 2965 5 chr2D.!!$F1 2964
4 TraesCS2A01G498300 chr2D 594067517 594068856 1339 True 1310.000000 1310 84.6810 765 2127 1 chr2D.!!$R2 1362
5 TraesCS2A01G498300 chr2D 593917871 593919740 1869 True 1256.500000 2355 88.5115 609 2838 2 chr2D.!!$R4 2229
6 TraesCS2A01G498300 chr2D 593894623 593899121 4498 True 765.000000 2290 90.8865 669 2965 4 chr2D.!!$R3 2296
7 TraesCS2A01G498300 chr2B 721110023 721111408 1385 True 1351.000000 1351 84.6960 765 2154 1 chr2B.!!$R3 1389
8 TraesCS2A01G498300 chr2B 720912775 720923954 11179 True 938.833333 1801 92.6615 25 2958 6 chr2B.!!$R4 2933
9 TraesCS2A01G498300 chr2B 720813213 720818953 5740 False 766.400000 1413 93.3688 25 2958 5 chr2B.!!$F2 2933

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
676 9325 0.042188 CGAAACACCGTTGTGCTGAG 60.042 55.0 0.0 0.0 46.86 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2515 17421 0.033699 GCCAGCTTTCCCTCAATCCT 60.034 55.0 0.0 0.0 0.0 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.501396 CATTTCGGTGCGCTCCAT 58.499 55.556 26.64 11.24 0.00 3.41
18 19 1.353103 CATTTCGGTGCGCTCCATC 59.647 57.895 26.64 0.00 0.00 3.51
19 20 1.091771 CATTTCGGTGCGCTCCATCT 61.092 55.000 26.64 6.67 0.00 2.90
20 21 0.464036 ATTTCGGTGCGCTCCATCTA 59.536 50.000 26.64 10.16 0.00 1.98
22 23 0.464036 TTCGGTGCGCTCCATCTAAT 59.536 50.000 26.64 0.00 0.00 1.73
23 24 0.249447 TCGGTGCGCTCCATCTAATG 60.249 55.000 26.64 9.78 0.00 1.90
69 5483 1.657751 GCAATTCAGAACCGCCTCCC 61.658 60.000 0.00 0.00 0.00 4.30
70 5484 0.322456 CAATTCAGAACCGCCTCCCA 60.322 55.000 0.00 0.00 0.00 4.37
110 5524 6.128063 TGGCATTTTAATTATTGTTTGCAGCC 60.128 34.615 0.00 0.00 35.58 4.85
112 5526 6.962678 GCATTTTAATTATTGTTTGCAGCCAG 59.037 34.615 0.00 0.00 0.00 4.85
130 5544 3.534554 CCAGCCCTGCAATTAAAATTCC 58.465 45.455 0.00 0.00 0.00 3.01
131 5545 3.198417 CCAGCCCTGCAATTAAAATTCCT 59.802 43.478 0.00 0.00 0.00 3.36
135 5549 7.049754 CAGCCCTGCAATTAAAATTCCTAAAT 58.950 34.615 0.00 0.00 0.00 1.40
136 5550 8.203485 CAGCCCTGCAATTAAAATTCCTAAATA 58.797 33.333 0.00 0.00 0.00 1.40
137 5551 8.767436 AGCCCTGCAATTAAAATTCCTAAATAA 58.233 29.630 0.00 0.00 0.00 1.40
138 5552 8.826710 GCCCTGCAATTAAAATTCCTAAATAAC 58.173 33.333 0.00 0.00 0.00 1.89
139 5553 9.883142 CCCTGCAATTAAAATTCCTAAATAACA 57.117 29.630 0.00 0.00 0.00 2.41
159 5573 4.260985 ACACTTTCACACACACATTCTCA 58.739 39.130 0.00 0.00 0.00 3.27
169 5583 4.036616 CACACACATTCTCATTCACCACAA 59.963 41.667 0.00 0.00 0.00 3.33
266 8785 6.913170 ACTTCACATCCAACATATGAAACAC 58.087 36.000 10.38 0.00 0.00 3.32
311 8929 2.134789 TCCCCTTGTCGTAGTCTACC 57.865 55.000 4.39 0.00 0.00 3.18
312 8930 1.637553 TCCCCTTGTCGTAGTCTACCT 59.362 52.381 4.39 0.00 0.00 3.08
327 8945 9.500864 CGTAGTCTACCTATCTTAACTTTTCAC 57.499 37.037 4.39 0.00 0.00 3.18
337 8955 9.931210 CTATCTTAACTTTTCACGTTGTCTTTT 57.069 29.630 0.00 0.00 0.00 2.27
339 8957 6.957077 TCTTAACTTTTCACGTTGTCTTTTCG 59.043 34.615 0.00 0.00 0.00 3.46
346 8964 2.289547 CACGTTGTCTTTTCGGACCAAT 59.710 45.455 0.00 0.00 35.54 3.16
347 8965 2.546789 ACGTTGTCTTTTCGGACCAATC 59.453 45.455 0.00 0.00 35.54 2.67
348 8966 2.546368 CGTTGTCTTTTCGGACCAATCA 59.454 45.455 0.00 0.00 35.54 2.57
363 8983 2.069273 CAATCACCGCCCGATATCTTC 58.931 52.381 0.34 0.00 0.00 2.87
366 8986 1.760613 TCACCGCCCGATATCTTCTTT 59.239 47.619 0.34 0.00 0.00 2.52
367 8987 1.867233 CACCGCCCGATATCTTCTTTG 59.133 52.381 0.34 0.00 0.00 2.77
368 8988 0.868406 CCGCCCGATATCTTCTTTGC 59.132 55.000 0.34 0.00 0.00 3.68
369 8989 0.868406 CGCCCGATATCTTCTTTGCC 59.132 55.000 0.34 0.00 0.00 4.52
377 8997 4.495844 CGATATCTTCTTTGCCGGAAAACC 60.496 45.833 5.05 0.00 0.00 3.27
389 9009 1.337447 CGGAAAACCGCCTCTTGACTA 60.337 52.381 0.00 0.00 0.00 2.59
390 9010 2.347731 GGAAAACCGCCTCTTGACTAG 58.652 52.381 0.00 0.00 0.00 2.57
392 9012 3.369576 GGAAAACCGCCTCTTGACTAGAT 60.370 47.826 0.00 0.00 30.92 1.98
396 9016 5.416271 AACCGCCTCTTGACTAGATTTAA 57.584 39.130 0.00 0.00 30.92 1.52
401 9045 5.394224 CGCCTCTTGACTAGATTTAAGGACA 60.394 44.000 0.00 0.00 30.92 4.02
422 9066 6.321690 GGACAGCCTCAACTAGTTATTAGAGA 59.678 42.308 17.83 6.58 33.39 3.10
437 9081 7.876582 AGTTATTAGAGACGGTTTTGCTACTTT 59.123 33.333 0.00 0.00 0.00 2.66
440 9084 8.788325 ATTAGAGACGGTTTTGCTACTTTAAT 57.212 30.769 0.00 0.00 0.00 1.40
472 9116 6.037786 TGAGTTTCACGAGGATGATTAACT 57.962 37.500 0.00 0.00 34.05 2.24
527 9171 1.110518 TTGGGTGAAAACCGCTTCCC 61.111 55.000 0.00 0.00 35.85 3.97
564 9208 7.680730 CCTCTAATGCCCATTTATGTACTACT 58.319 38.462 0.00 0.00 32.50 2.57
565 9209 8.812972 CCTCTAATGCCCATTTATGTACTACTA 58.187 37.037 0.00 0.00 32.50 1.82
566 9210 9.862371 CTCTAATGCCCATTTATGTACTACTAG 57.138 37.037 0.00 0.00 32.50 2.57
567 9211 9.375974 TCTAATGCCCATTTATGTACTACTAGT 57.624 33.333 0.00 0.00 32.50 2.57
568 9212 9.424319 CTAATGCCCATTTATGTACTACTAGTG 57.576 37.037 5.39 0.00 32.50 2.74
569 9213 6.801718 TGCCCATTTATGTACTACTAGTGT 57.198 37.500 5.39 4.48 0.00 3.55
613 9262 0.179062 GCGCACTCCCTCATCTCATT 60.179 55.000 0.30 0.00 0.00 2.57
676 9325 0.042188 CGAAACACCGTTGTGCTGAG 60.042 55.000 0.00 0.00 46.86 3.35
690 9342 3.150848 TGCTGAGCACTAACTATGTCG 57.849 47.619 1.40 0.00 31.71 4.35
691 9343 2.492088 TGCTGAGCACTAACTATGTCGT 59.508 45.455 1.40 0.00 31.71 4.34
692 9344 3.109619 GCTGAGCACTAACTATGTCGTC 58.890 50.000 0.00 0.00 0.00 4.20
698 9350 5.967088 AGCACTAACTATGTCGTCAAATCT 58.033 37.500 0.00 0.00 0.00 2.40
2053 16945 1.199558 GGCCGATCTATCTACCACGTC 59.800 57.143 0.00 0.00 0.00 4.34
2160 17059 5.464168 AGATTTTTCATTCTTGTTGCTCCG 58.536 37.500 0.00 0.00 0.00 4.63
2162 17061 1.603456 TTCATTCTTGTTGCTCCGCA 58.397 45.000 0.00 0.00 36.47 5.69
2166 17065 1.896220 TTCTTGTTGCTCCGCAGATT 58.104 45.000 0.00 0.00 40.61 2.40
2289 17195 3.570212 AACGAGCCAGGCCCACTT 61.570 61.111 8.22 0.00 0.00 3.16
2300 17206 2.025887 CAGGCCCACTTAAGAATCAGGT 60.026 50.000 10.09 0.00 0.00 4.00
2301 17207 3.199946 CAGGCCCACTTAAGAATCAGGTA 59.800 47.826 10.09 0.00 0.00 3.08
2302 17208 3.850173 AGGCCCACTTAAGAATCAGGTAA 59.150 43.478 10.09 0.00 0.00 2.85
2303 17209 4.080299 AGGCCCACTTAAGAATCAGGTAAG 60.080 45.833 10.09 0.00 0.00 2.34
2304 17210 4.200092 GCCCACTTAAGAATCAGGTAAGG 58.800 47.826 10.09 0.00 0.00 2.69
2305 17211 4.200092 CCCACTTAAGAATCAGGTAAGGC 58.800 47.826 10.09 0.00 0.00 4.35
2306 17212 4.200092 CCACTTAAGAATCAGGTAAGGCC 58.800 47.826 10.09 0.00 37.58 5.19
2307 17213 4.200092 CACTTAAGAATCAGGTAAGGCCC 58.800 47.826 10.09 0.00 38.26 5.80
2308 17214 4.080299 CACTTAAGAATCAGGTAAGGCCCT 60.080 45.833 10.09 0.00 38.26 5.19
2309 17215 4.540502 ACTTAAGAATCAGGTAAGGCCCTT 59.459 41.667 10.09 0.00 38.26 3.95
2310 17216 3.653835 AAGAATCAGGTAAGGCCCTTC 57.346 47.619 0.00 0.00 38.26 3.46
2311 17217 2.562296 AGAATCAGGTAAGGCCCTTCA 58.438 47.619 0.00 0.00 38.26 3.02
2312 17218 2.239907 AGAATCAGGTAAGGCCCTTCAC 59.760 50.000 0.00 0.00 38.26 3.18
2313 17219 1.972588 ATCAGGTAAGGCCCTTCACT 58.027 50.000 0.00 0.00 38.26 3.41
2314 17220 2.634639 TCAGGTAAGGCCCTTCACTA 57.365 50.000 0.00 0.00 38.26 2.74
2315 17221 3.130734 TCAGGTAAGGCCCTTCACTAT 57.869 47.619 0.00 0.00 38.26 2.12
2316 17222 2.771943 TCAGGTAAGGCCCTTCACTATG 59.228 50.000 0.00 1.82 38.26 2.23
2317 17223 2.505819 CAGGTAAGGCCCTTCACTATGT 59.494 50.000 0.00 0.00 38.26 2.29
2318 17224 3.709653 CAGGTAAGGCCCTTCACTATGTA 59.290 47.826 0.00 0.00 38.26 2.29
2319 17225 3.967987 AGGTAAGGCCCTTCACTATGTAG 59.032 47.826 0.00 0.00 38.26 2.74
2320 17226 3.071167 GGTAAGGCCCTTCACTATGTAGG 59.929 52.174 0.00 0.00 35.03 3.18
2321 17227 1.132500 AGGCCCTTCACTATGTAGGC 58.868 55.000 0.00 0.00 34.06 3.93
2322 17228 0.108774 GGCCCTTCACTATGTAGGCC 59.891 60.000 1.48 1.48 34.06 5.19
2323 17229 0.837272 GCCCTTCACTATGTAGGCCA 59.163 55.000 5.01 0.00 34.06 5.36
2324 17230 1.211949 GCCCTTCACTATGTAGGCCAA 59.788 52.381 5.01 0.00 34.06 4.52
2325 17231 2.356741 GCCCTTCACTATGTAGGCCAAA 60.357 50.000 5.01 0.00 34.06 3.28
2326 17232 3.876156 GCCCTTCACTATGTAGGCCAAAA 60.876 47.826 5.01 0.00 34.06 2.44
2327 17233 3.947834 CCCTTCACTATGTAGGCCAAAAG 59.052 47.826 5.01 0.00 34.06 2.27
2328 17234 4.567747 CCCTTCACTATGTAGGCCAAAAGT 60.568 45.833 5.01 0.00 34.06 2.66
2329 17235 4.396166 CCTTCACTATGTAGGCCAAAAGTG 59.604 45.833 5.01 11.21 40.16 3.16
2341 17247 3.742433 CCAAAAGTGGTGCCAAATACA 57.258 42.857 0.00 0.00 40.42 2.29
2342 17248 3.389221 CCAAAAGTGGTGCCAAATACAC 58.611 45.455 0.00 0.00 40.42 2.90
2343 17249 3.069443 CCAAAAGTGGTGCCAAATACACT 59.931 43.478 0.00 0.00 45.34 3.55
2356 17262 6.783892 CCAAATACACTTTGGTTCATTTGG 57.216 37.500 8.91 8.91 41.96 3.28
2357 17263 5.179182 CCAAATACACTTTGGTTCATTTGGC 59.821 40.000 10.07 0.00 41.74 4.52
2358 17264 5.543507 AATACACTTTGGTTCATTTGGCA 57.456 34.783 0.00 0.00 0.00 4.92
2359 17265 3.177997 ACACTTTGGTTCATTTGGCAC 57.822 42.857 0.00 0.00 0.00 5.01
2360 17266 2.158971 ACACTTTGGTTCATTTGGCACC 60.159 45.455 0.00 0.00 0.00 5.01
2361 17267 1.068434 ACTTTGGTTCATTTGGCACCG 59.932 47.619 0.00 0.00 32.71 4.94
2362 17268 1.339610 CTTTGGTTCATTTGGCACCGA 59.660 47.619 0.00 0.00 32.71 4.69
2363 17269 1.626686 TTGGTTCATTTGGCACCGAT 58.373 45.000 0.00 0.00 32.71 4.18
2364 17270 0.887247 TGGTTCATTTGGCACCGATG 59.113 50.000 0.00 0.00 32.71 3.84
2373 17279 2.124151 GCACCGATGCCCTCCATT 60.124 61.111 0.00 0.00 46.97 3.16
2374 17280 2.484062 GCACCGATGCCCTCCATTG 61.484 63.158 0.00 0.00 46.97 2.82
2375 17281 2.124151 ACCGATGCCCTCCATTGC 60.124 61.111 0.00 0.00 34.50 3.56
2376 17282 2.908940 CCGATGCCCTCCATTGCC 60.909 66.667 0.00 0.00 34.50 4.52
2377 17283 2.908940 CGATGCCCTCCATTGCCC 60.909 66.667 0.00 0.00 33.29 5.36
2378 17284 2.279743 GATGCCCTCCATTGCCCA 59.720 61.111 0.00 0.00 33.29 5.36
2379 17285 1.831286 GATGCCCTCCATTGCCCAG 60.831 63.158 0.00 0.00 33.29 4.45
2380 17286 4.764771 TGCCCTCCATTGCCCAGC 62.765 66.667 0.00 0.00 0.00 4.85
2384 17290 4.431131 CTCCATTGCCCAGCCGGT 62.431 66.667 1.90 0.00 0.00 5.28
2385 17291 4.738998 TCCATTGCCCAGCCGGTG 62.739 66.667 1.90 0.00 0.00 4.94
2392 17298 3.797353 CCCAGCCGGTGCCATACT 61.797 66.667 1.90 0.00 38.69 2.12
2393 17299 2.439960 CCCAGCCGGTGCCATACTA 61.440 63.158 1.90 0.00 38.69 1.82
2394 17300 1.754745 CCAGCCGGTGCCATACTAT 59.245 57.895 1.90 0.00 38.69 2.12
2395 17301 0.108585 CCAGCCGGTGCCATACTATT 59.891 55.000 1.90 0.00 38.69 1.73
2396 17302 1.476833 CCAGCCGGTGCCATACTATTT 60.477 52.381 1.90 0.00 38.69 1.40
2397 17303 2.297701 CAGCCGGTGCCATACTATTTT 58.702 47.619 1.90 0.00 38.69 1.82
2398 17304 2.687935 CAGCCGGTGCCATACTATTTTT 59.312 45.455 1.90 0.00 38.69 1.94
2420 17326 1.956802 GGGAACCGAAGCAAGTTGG 59.043 57.895 4.75 0.00 40.86 3.77
2421 17327 0.822121 GGGAACCGAAGCAAGTTGGT 60.822 55.000 0.63 0.63 40.86 3.67
2422 17328 0.310854 GGAACCGAAGCAAGTTGGTG 59.689 55.000 8.61 0.00 34.26 4.17
2423 17329 0.317854 GAACCGAAGCAAGTTGGTGC 60.318 55.000 8.61 5.54 45.28 5.01
2439 17345 4.102113 GCACCAATGCCCACTTCT 57.898 55.556 0.00 0.00 46.97 2.85
2440 17346 3.264574 GCACCAATGCCCACTTCTA 57.735 52.632 0.00 0.00 46.97 2.10
2441 17347 1.098050 GCACCAATGCCCACTTCTAG 58.902 55.000 0.00 0.00 46.97 2.43
2442 17348 1.098050 CACCAATGCCCACTTCTAGC 58.902 55.000 0.00 0.00 0.00 3.42
2443 17349 0.698238 ACCAATGCCCACTTCTAGCA 59.302 50.000 0.00 0.00 41.50 3.49
2447 17353 1.396653 ATGCCCACTTCTAGCATTGC 58.603 50.000 0.00 0.00 44.61 3.56
2448 17354 0.038021 TGCCCACTTCTAGCATTGCA 59.962 50.000 11.91 0.00 0.00 4.08
2449 17355 1.176527 GCCCACTTCTAGCATTGCAA 58.823 50.000 11.91 0.00 0.00 4.08
2450 17356 1.753073 GCCCACTTCTAGCATTGCAAT 59.247 47.619 11.91 5.99 0.00 3.56
2451 17357 2.951642 GCCCACTTCTAGCATTGCAATA 59.048 45.455 12.53 0.00 0.00 1.90
2452 17358 3.381272 GCCCACTTCTAGCATTGCAATAA 59.619 43.478 12.53 1.31 0.00 1.40
2453 17359 4.142182 GCCCACTTCTAGCATTGCAATAAA 60.142 41.667 12.53 0.00 0.00 1.40
2454 17360 5.624281 GCCCACTTCTAGCATTGCAATAAAA 60.624 40.000 12.53 0.00 0.00 1.52
2455 17361 6.576185 CCCACTTCTAGCATTGCAATAAAAT 58.424 36.000 12.53 1.00 0.00 1.82
2456 17362 7.684187 GCCCACTTCTAGCATTGCAATAAAATA 60.684 37.037 12.53 2.16 0.00 1.40
2457 17363 8.362639 CCCACTTCTAGCATTGCAATAAAATAT 58.637 33.333 12.53 0.00 0.00 1.28
2458 17364 9.188588 CCACTTCTAGCATTGCAATAAAATATG 57.811 33.333 12.53 0.03 0.00 1.78
2459 17365 9.740239 CACTTCTAGCATTGCAATAAAATATGT 57.260 29.630 12.53 4.45 0.00 2.29
2479 17385 5.666969 TGTTAAACTGTGAAGGATCAACG 57.333 39.130 0.00 0.00 37.30 4.10
2480 17386 4.513692 TGTTAAACTGTGAAGGATCAACGG 59.486 41.667 0.00 0.00 37.30 4.44
2481 17387 2.185004 AACTGTGAAGGATCAACGGG 57.815 50.000 0.00 0.00 37.30 5.28
2482 17388 1.348064 ACTGTGAAGGATCAACGGGA 58.652 50.000 0.00 0.00 37.30 5.14
2483 17389 1.909302 ACTGTGAAGGATCAACGGGAT 59.091 47.619 0.00 0.00 37.30 3.85
2484 17390 2.283298 CTGTGAAGGATCAACGGGATG 58.717 52.381 0.00 0.00 37.30 3.51
2485 17391 1.905894 TGTGAAGGATCAACGGGATGA 59.094 47.619 0.00 0.00 37.30 2.92
2486 17392 2.093500 TGTGAAGGATCAACGGGATGAG 60.093 50.000 0.00 0.00 37.30 2.90
2487 17393 2.168521 GTGAAGGATCAACGGGATGAGA 59.831 50.000 0.00 0.00 37.30 3.27
2488 17394 2.432146 TGAAGGATCAACGGGATGAGAG 59.568 50.000 0.00 0.00 36.00 3.20
2489 17395 2.461300 AGGATCAACGGGATGAGAGA 57.539 50.000 0.00 0.00 36.00 3.10
2490 17396 2.315176 AGGATCAACGGGATGAGAGAG 58.685 52.381 0.00 0.00 36.00 3.20
2491 17397 2.091610 AGGATCAACGGGATGAGAGAGA 60.092 50.000 0.00 0.00 36.00 3.10
2492 17398 2.295909 GGATCAACGGGATGAGAGAGAG 59.704 54.545 0.00 0.00 36.00 3.20
2493 17399 1.769026 TCAACGGGATGAGAGAGAGG 58.231 55.000 0.00 0.00 0.00 3.69
2494 17400 1.285078 TCAACGGGATGAGAGAGAGGA 59.715 52.381 0.00 0.00 0.00 3.71
2495 17401 1.680735 CAACGGGATGAGAGAGAGGAG 59.319 57.143 0.00 0.00 0.00 3.69
2496 17402 0.184933 ACGGGATGAGAGAGAGGAGG 59.815 60.000 0.00 0.00 0.00 4.30
2497 17403 0.476338 CGGGATGAGAGAGAGGAGGA 59.524 60.000 0.00 0.00 0.00 3.71
2498 17404 1.817740 CGGGATGAGAGAGAGGAGGAC 60.818 61.905 0.00 0.00 0.00 3.85
2499 17405 1.499007 GGGATGAGAGAGAGGAGGACT 59.501 57.143 0.00 0.00 0.00 3.85
2500 17406 2.714250 GGGATGAGAGAGAGGAGGACTA 59.286 54.545 0.00 0.00 0.00 2.59
2501 17407 3.244911 GGGATGAGAGAGAGGAGGACTAG 60.245 56.522 0.00 0.00 0.00 2.57
2502 17408 3.650942 GGATGAGAGAGAGGAGGACTAGA 59.349 52.174 0.00 0.00 0.00 2.43
2503 17409 4.263068 GGATGAGAGAGAGGAGGACTAGAG 60.263 54.167 0.00 0.00 0.00 2.43
2504 17410 4.002256 TGAGAGAGAGGAGGACTAGAGA 57.998 50.000 0.00 0.00 0.00 3.10
2505 17411 4.367166 TGAGAGAGAGGAGGACTAGAGAA 58.633 47.826 0.00 0.00 0.00 2.87
2506 17412 4.163458 TGAGAGAGAGGAGGACTAGAGAAC 59.837 50.000 0.00 0.00 0.00 3.01
2507 17413 4.371681 AGAGAGAGGAGGACTAGAGAACT 58.628 47.826 0.00 0.00 0.00 3.01
2508 17414 4.409247 AGAGAGAGGAGGACTAGAGAACTC 59.591 50.000 0.00 0.00 0.00 3.01
2509 17415 3.134081 AGAGAGGAGGACTAGAGAACTCG 59.866 52.174 0.00 0.00 34.09 4.18
2510 17416 2.841881 AGAGGAGGACTAGAGAACTCGT 59.158 50.000 0.00 0.00 34.09 4.18
2511 17417 4.032310 AGAGGAGGACTAGAGAACTCGTA 58.968 47.826 0.00 0.00 34.09 3.43
2512 17418 4.122046 GAGGAGGACTAGAGAACTCGTAC 58.878 52.174 0.00 0.00 34.09 3.67
2513 17419 2.865551 GGAGGACTAGAGAACTCGTACG 59.134 54.545 9.53 9.53 29.40 3.67
2514 17420 3.430098 GGAGGACTAGAGAACTCGTACGA 60.430 52.174 18.41 18.41 29.40 3.43
2515 17421 4.180057 GAGGACTAGAGAACTCGTACGAA 58.820 47.826 20.00 1.11 29.40 3.85
2516 17422 4.183101 AGGACTAGAGAACTCGTACGAAG 58.817 47.826 20.00 13.77 29.40 3.79
2517 17423 3.309410 GGACTAGAGAACTCGTACGAAGG 59.691 52.174 20.00 11.14 34.09 3.46
2518 17424 4.180057 GACTAGAGAACTCGTACGAAGGA 58.820 47.826 20.00 0.00 34.09 3.36
2519 17425 4.768583 ACTAGAGAACTCGTACGAAGGAT 58.231 43.478 20.00 5.93 34.09 3.24
2520 17426 5.184711 ACTAGAGAACTCGTACGAAGGATT 58.815 41.667 20.00 10.98 34.09 3.01
2521 17427 4.358494 AGAGAACTCGTACGAAGGATTG 57.642 45.455 20.00 8.86 34.09 2.67
2522 17428 4.008330 AGAGAACTCGTACGAAGGATTGA 58.992 43.478 20.00 0.00 34.09 2.57
2523 17429 4.095185 AGAGAACTCGTACGAAGGATTGAG 59.905 45.833 20.00 7.36 34.09 3.02
2524 17430 3.128938 AGAACTCGTACGAAGGATTGAGG 59.871 47.826 20.00 6.62 0.00 3.86
2525 17431 1.749634 ACTCGTACGAAGGATTGAGGG 59.250 52.381 20.00 5.87 0.00 4.30
2526 17432 2.022195 CTCGTACGAAGGATTGAGGGA 58.978 52.381 20.00 0.00 0.00 4.20
2527 17433 2.426024 CTCGTACGAAGGATTGAGGGAA 59.574 50.000 20.00 0.00 0.00 3.97
2528 17434 2.827322 TCGTACGAAGGATTGAGGGAAA 59.173 45.455 17.11 0.00 0.00 3.13
2529 17435 3.119245 TCGTACGAAGGATTGAGGGAAAG 60.119 47.826 17.11 0.00 0.00 2.62
2530 17436 2.115343 ACGAAGGATTGAGGGAAAGC 57.885 50.000 0.00 0.00 0.00 3.51
2531 17437 1.630878 ACGAAGGATTGAGGGAAAGCT 59.369 47.619 0.00 0.00 0.00 3.74
2532 17438 2.012673 CGAAGGATTGAGGGAAAGCTG 58.987 52.381 0.00 0.00 0.00 4.24
2533 17439 2.373224 GAAGGATTGAGGGAAAGCTGG 58.627 52.381 0.00 0.00 0.00 4.85
2534 17440 0.033699 AGGATTGAGGGAAAGCTGGC 60.034 55.000 0.00 0.00 0.00 4.85
2535 17441 0.033699 GGATTGAGGGAAAGCTGGCT 60.034 55.000 0.00 0.00 0.00 4.75
2536 17442 1.618074 GGATTGAGGGAAAGCTGGCTT 60.618 52.381 1.60 1.60 37.98 4.35
2537 17443 1.475682 GATTGAGGGAAAGCTGGCTTG 59.524 52.381 8.66 0.00 36.26 4.01
2538 17444 1.181098 TTGAGGGAAAGCTGGCTTGC 61.181 55.000 8.66 6.68 36.26 4.01
2539 17445 1.303970 GAGGGAAAGCTGGCTTGCT 60.304 57.895 12.40 0.01 46.40 3.91
2540 17446 1.303970 AGGGAAAGCTGGCTTGCTC 60.304 57.895 12.40 8.99 43.24 4.26
2541 17447 2.346541 GGGAAAGCTGGCTTGCTCC 61.347 63.158 12.40 13.48 43.24 4.70
2542 17448 1.604593 GGAAAGCTGGCTTGCTCCA 60.605 57.895 16.63 0.00 43.24 3.86
2543 17449 0.969409 GGAAAGCTGGCTTGCTCCAT 60.969 55.000 16.63 0.00 43.24 3.41
2544 17450 0.893447 GAAAGCTGGCTTGCTCCATT 59.107 50.000 8.66 0.00 43.24 3.16
2545 17451 1.274447 GAAAGCTGGCTTGCTCCATTT 59.726 47.619 8.66 0.00 43.24 2.32
2546 17452 1.345063 AAGCTGGCTTGCTCCATTTT 58.655 45.000 7.05 0.00 43.24 1.82
2547 17453 1.345063 AGCTGGCTTGCTCCATTTTT 58.655 45.000 0.00 0.00 39.34 1.94
2568 17474 7.633193 TTTTTATGTATACATGTGGTCCCAC 57.367 36.000 25.48 9.57 46.33 4.61
2569 17475 6.569127 TTTATGTATACATGTGGTCCCACT 57.431 37.500 25.48 0.91 46.30 4.00
2570 17476 6.569127 TTATGTATACATGTGGTCCCACTT 57.431 37.500 25.48 8.40 46.30 3.16
2571 17477 4.919774 TGTATACATGTGGTCCCACTTT 57.080 40.909 16.91 2.75 46.30 2.66
2572 17478 5.249780 TGTATACATGTGGTCCCACTTTT 57.750 39.130 16.91 7.06 46.30 2.27
2573 17479 5.250200 TGTATACATGTGGTCCCACTTTTC 58.750 41.667 16.91 3.27 46.30 2.29
2574 17480 4.657814 ATACATGTGGTCCCACTTTTCT 57.342 40.909 16.91 0.00 46.30 2.52
2575 17481 5.772393 ATACATGTGGTCCCACTTTTCTA 57.228 39.130 16.91 0.00 46.30 2.10
2576 17482 4.657814 ACATGTGGTCCCACTTTTCTAT 57.342 40.909 16.91 0.00 46.30 1.98
2577 17483 4.335416 ACATGTGGTCCCACTTTTCTATG 58.665 43.478 16.91 12.71 46.30 2.23
2578 17484 3.433306 TGTGGTCCCACTTTTCTATGG 57.567 47.619 16.91 0.00 46.30 2.74
2584 17490 1.838112 CCACTTTTCTATGGGCTGCA 58.162 50.000 0.50 0.00 31.83 4.41
2585 17491 2.170166 CCACTTTTCTATGGGCTGCAA 58.830 47.619 0.50 0.00 31.83 4.08
2586 17492 2.562298 CCACTTTTCTATGGGCTGCAAA 59.438 45.455 0.50 0.00 31.83 3.68
2587 17493 3.367703 CCACTTTTCTATGGGCTGCAAAG 60.368 47.826 0.50 3.48 31.83 2.77
2588 17494 2.827921 ACTTTTCTATGGGCTGCAAAGG 59.172 45.455 0.50 0.00 0.00 3.11
2589 17495 1.185315 TTTCTATGGGCTGCAAAGGC 58.815 50.000 0.50 0.00 41.68 4.35
2608 17514 1.295423 ACATAGTGTGACCGGTGCC 59.705 57.895 14.63 1.54 0.00 5.01
2609 17515 1.295101 CATAGTGTGACCGGTGCCA 59.705 57.895 14.63 4.97 0.00 4.92
2610 17516 0.107703 CATAGTGTGACCGGTGCCAT 60.108 55.000 14.63 0.00 0.00 4.40
2611 17517 1.138069 CATAGTGTGACCGGTGCCATA 59.862 52.381 14.63 0.00 0.00 2.74
2612 17518 0.821517 TAGTGTGACCGGTGCCATAG 59.178 55.000 14.63 0.00 0.00 2.23
2613 17519 0.902984 AGTGTGACCGGTGCCATAGA 60.903 55.000 14.63 0.00 0.00 1.98
2614 17520 0.036765 GTGTGACCGGTGCCATAGAA 60.037 55.000 14.63 0.00 0.00 2.10
2615 17521 0.687920 TGTGACCGGTGCCATAGAAA 59.312 50.000 14.63 0.00 0.00 2.52
2616 17522 1.280710 TGTGACCGGTGCCATAGAAAT 59.719 47.619 14.63 0.00 0.00 2.17
2617 17523 2.290641 TGTGACCGGTGCCATAGAAATT 60.291 45.455 14.63 0.00 0.00 1.82
2618 17524 2.752903 GTGACCGGTGCCATAGAAATTT 59.247 45.455 14.63 0.00 0.00 1.82
2619 17525 3.013921 TGACCGGTGCCATAGAAATTTC 58.986 45.455 14.63 10.33 0.00 2.17
2620 17526 3.279434 GACCGGTGCCATAGAAATTTCT 58.721 45.455 23.53 23.53 41.24 2.52
2621 17527 3.279434 ACCGGTGCCATAGAAATTTCTC 58.721 45.455 23.70 10.44 38.70 2.87
2622 17528 3.278574 CCGGTGCCATAGAAATTTCTCA 58.721 45.455 23.70 12.90 38.70 3.27
2623 17529 3.313526 CCGGTGCCATAGAAATTTCTCAG 59.686 47.826 23.70 16.43 38.70 3.35
2624 17530 4.191544 CGGTGCCATAGAAATTTCTCAGA 58.808 43.478 23.70 7.78 38.70 3.27
2625 17531 4.272018 CGGTGCCATAGAAATTTCTCAGAG 59.728 45.833 23.70 12.35 38.70 3.35
2626 17532 4.036144 GGTGCCATAGAAATTTCTCAGAGC 59.964 45.833 23.70 20.43 38.70 4.09
2627 17533 4.637534 GTGCCATAGAAATTTCTCAGAGCA 59.362 41.667 23.70 22.41 38.70 4.26
2628 17534 5.298777 GTGCCATAGAAATTTCTCAGAGCAT 59.701 40.000 23.70 8.39 38.70 3.79
2629 17535 5.530171 TGCCATAGAAATTTCTCAGAGCATC 59.470 40.000 23.70 7.41 38.70 3.91
2630 17536 5.333952 GCCATAGAAATTTCTCAGAGCATCG 60.334 44.000 23.70 5.45 38.40 3.84
2631 17537 5.987953 CCATAGAAATTTCTCAGAGCATCGA 59.012 40.000 23.70 3.30 38.40 3.59
2632 17538 6.649973 CCATAGAAATTTCTCAGAGCATCGAT 59.350 38.462 23.70 5.55 38.40 3.59
2633 17539 5.987777 AGAAATTTCTCAGAGCATCGATG 57.012 39.130 21.27 21.27 33.70 3.84
2634 17540 4.272991 AGAAATTTCTCAGAGCATCGATGC 59.727 41.667 37.29 37.29 43.31 3.91
2635 17541 6.709994 AGAAATTTCTCAGAGCATCGATGCC 61.710 44.000 39.38 30.68 43.74 4.40
2649 17555 6.748333 CATCGATGCCCAATCTGTAATATT 57.252 37.500 13.37 0.00 32.61 1.28
2650 17556 7.149569 CATCGATGCCCAATCTGTAATATTT 57.850 36.000 13.37 0.00 32.61 1.40
2651 17557 7.596494 CATCGATGCCCAATCTGTAATATTTT 58.404 34.615 13.37 0.00 32.61 1.82
2652 17558 8.729756 CATCGATGCCCAATCTGTAATATTTTA 58.270 33.333 13.37 0.00 32.61 1.52
2653 17559 8.684386 TCGATGCCCAATCTGTAATATTTTAA 57.316 30.769 0.00 0.00 32.61 1.52
2654 17560 9.295825 TCGATGCCCAATCTGTAATATTTTAAT 57.704 29.630 0.00 0.00 32.61 1.40
2655 17561 9.345517 CGATGCCCAATCTGTAATATTTTAATG 57.654 33.333 0.00 0.00 32.61 1.90
2659 17565 9.908152 GCCCAATCTGTAATATTTTAATGTACC 57.092 33.333 0.00 0.00 0.00 3.34
2663 17569 7.733402 TCTGTAATATTTTAATGTACCGGGC 57.267 36.000 6.32 0.00 0.00 6.13
2664 17570 7.281098 TCTGTAATATTTTAATGTACCGGGCA 58.719 34.615 6.32 4.64 0.00 5.36
2665 17571 7.227116 TCTGTAATATTTTAATGTACCGGGCAC 59.773 37.037 6.32 3.56 0.00 5.01
2678 17584 2.992089 GGGCACCGATCACATAGTG 58.008 57.895 0.00 0.00 40.86 2.74
2679 17585 0.532862 GGGCACCGATCACATAGTGG 60.533 60.000 0.00 0.00 40.86 4.00
2680 17586 0.464036 GGCACCGATCACATAGTGGA 59.536 55.000 0.00 0.00 33.87 4.02
2681 17587 1.134521 GGCACCGATCACATAGTGGAA 60.135 52.381 0.00 0.00 33.87 3.53
2682 17588 2.205074 GCACCGATCACATAGTGGAAG 58.795 52.381 0.00 0.00 33.87 3.46
2683 17589 2.826428 CACCGATCACATAGTGGAAGG 58.174 52.381 0.00 1.60 33.87 3.46
2684 17590 1.139058 ACCGATCACATAGTGGAAGGC 59.861 52.381 0.00 0.00 33.87 4.35
2685 17591 1.541233 CCGATCACATAGTGGAAGGCC 60.541 57.143 0.00 0.00 33.87 5.19
2812 17735 8.159344 ACTTTTCATCTCGATCAAAAGAAAGT 57.841 30.769 18.66 11.62 40.05 2.66
2827 17750 6.926630 AAAGAAAGTTTACCATGCCCAATA 57.073 33.333 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.091771 AGATGGAGCGCACCGAAATG 61.092 55.000 19.24 0.00 0.00 2.32
1 2 0.464036 TAGATGGAGCGCACCGAAAT 59.536 50.000 19.24 7.14 0.00 2.17
2 3 0.248012 TTAGATGGAGCGCACCGAAA 59.752 50.000 19.24 7.54 0.00 3.46
3 4 0.464036 ATTAGATGGAGCGCACCGAA 59.536 50.000 19.24 10.55 0.00 4.30
6 7 1.069204 TCTCATTAGATGGAGCGCACC 59.931 52.381 17.78 17.78 0.00 5.01
7 8 2.515926 TCTCATTAGATGGAGCGCAC 57.484 50.000 11.47 1.97 0.00 5.34
8 9 3.758755 ATTCTCATTAGATGGAGCGCA 57.241 42.857 11.47 0.00 0.00 6.09
10 11 6.266168 AGAGTATTCTCATTAGATGGAGCG 57.734 41.667 1.92 0.00 42.66 5.03
69 5483 9.883142 TTAAAATGCCAACCCTAAATAAGAATG 57.117 29.630 0.00 0.00 0.00 2.67
110 5524 4.476628 AGGAATTTTAATTGCAGGGCTG 57.523 40.909 8.99 0.00 38.95 4.85
112 5526 8.826710 GTTATTTAGGAATTTTAATTGCAGGGC 58.173 33.333 8.99 0.00 38.95 5.19
130 5544 9.169468 GAATGTGTGTGTGAAAGTGTTATTTAG 57.831 33.333 0.00 0.00 0.00 1.85
131 5545 8.898761 AGAATGTGTGTGTGAAAGTGTTATTTA 58.101 29.630 0.00 0.00 0.00 1.40
135 5549 5.877564 TGAGAATGTGTGTGTGAAAGTGTTA 59.122 36.000 0.00 0.00 0.00 2.41
136 5550 4.699735 TGAGAATGTGTGTGTGAAAGTGTT 59.300 37.500 0.00 0.00 0.00 3.32
137 5551 4.260985 TGAGAATGTGTGTGTGAAAGTGT 58.739 39.130 0.00 0.00 0.00 3.55
138 5552 4.880886 TGAGAATGTGTGTGTGAAAGTG 57.119 40.909 0.00 0.00 0.00 3.16
139 5553 5.589855 TGAATGAGAATGTGTGTGTGAAAGT 59.410 36.000 0.00 0.00 0.00 2.66
141 5555 5.221028 GGTGAATGAGAATGTGTGTGTGAAA 60.221 40.000 0.00 0.00 0.00 2.69
142 5556 4.275689 GGTGAATGAGAATGTGTGTGTGAA 59.724 41.667 0.00 0.00 0.00 3.18
148 5562 4.834357 TTGTGGTGAATGAGAATGTGTG 57.166 40.909 0.00 0.00 0.00 3.82
298 8822 8.798859 AAAGTTAAGATAGGTAGACTACGACA 57.201 34.615 6.54 0.00 33.70 4.35
311 8929 9.931210 AAAAGACAACGTGAAAAGTTAAGATAG 57.069 29.630 0.00 0.00 36.04 2.08
312 8930 9.925268 GAAAAGACAACGTGAAAAGTTAAGATA 57.075 29.630 0.00 0.00 36.04 1.98
327 8945 2.546368 TGATTGGTCCGAAAAGACAACG 59.454 45.455 0.00 0.00 38.59 4.10
339 8957 2.035237 TATCGGGCGGTGATTGGTCC 62.035 60.000 0.00 0.00 0.00 4.46
346 8964 1.410004 AAGAAGATATCGGGCGGTGA 58.590 50.000 0.00 0.00 0.00 4.02
347 8965 1.867233 CAAAGAAGATATCGGGCGGTG 59.133 52.381 0.00 0.00 0.00 4.94
348 8966 1.810412 GCAAAGAAGATATCGGGCGGT 60.810 52.381 0.00 0.00 0.00 5.68
354 8974 4.495844 GGTTTTCCGGCAAAGAAGATATCG 60.496 45.833 0.00 0.00 0.00 2.92
377 8997 5.044558 GTCCTTAAATCTAGTCAAGAGGCG 58.955 45.833 0.00 0.00 37.74 5.52
389 9009 4.917906 AGTTGAGGCTGTCCTTAAATCT 57.082 40.909 0.00 0.00 44.46 2.40
390 9010 5.735766 ACTAGTTGAGGCTGTCCTTAAATC 58.264 41.667 0.00 0.00 44.46 2.17
392 9012 5.562298 AACTAGTTGAGGCTGTCCTTAAA 57.438 39.130 7.48 0.00 44.46 1.52
401 9045 5.299782 CCGTCTCTAATAACTAGTTGAGGCT 59.700 44.000 18.56 0.00 0.00 4.58
422 9066 3.499157 TGCGATTAAAGTAGCAAAACCGT 59.501 39.130 0.00 0.00 36.60 4.83
437 9081 3.242381 CGTGAAACTCATGCATGCGATTA 60.242 43.478 22.90 4.26 31.75 1.75
440 9084 0.443478 CGTGAAACTCATGCATGCGA 59.557 50.000 22.90 5.79 31.75 5.10
527 9171 2.460918 CATTAGAGGCGTTCCACGTAG 58.539 52.381 0.00 0.00 44.73 3.51
564 9208 2.979678 AGCCAAGAAGGGAAAGACACTA 59.020 45.455 0.00 0.00 38.09 2.74
565 9209 1.777272 AGCCAAGAAGGGAAAGACACT 59.223 47.619 0.00 0.00 38.09 3.55
566 9210 2.155279 GAGCCAAGAAGGGAAAGACAC 58.845 52.381 0.00 0.00 38.09 3.67
567 9211 1.774254 TGAGCCAAGAAGGGAAAGACA 59.226 47.619 0.00 0.00 38.09 3.41
568 9212 2.155279 GTGAGCCAAGAAGGGAAAGAC 58.845 52.381 0.00 0.00 38.09 3.01
569 9213 1.774254 TGTGAGCCAAGAAGGGAAAGA 59.226 47.619 0.00 0.00 38.09 2.52
613 9262 0.392706 ACTGCACACCTGTCGATGAA 59.607 50.000 0.00 0.00 0.00 2.57
676 9325 7.166142 GTCTAGATTTGACGACATAGTTAGTGC 59.834 40.741 0.00 0.00 0.00 4.40
690 9342 4.026145 GCATTGAGAGCGTCTAGATTTGAC 60.026 45.833 0.00 0.00 0.00 3.18
691 9343 4.115516 GCATTGAGAGCGTCTAGATTTGA 58.884 43.478 0.00 0.00 0.00 2.69
692 9344 3.867493 TGCATTGAGAGCGTCTAGATTTG 59.133 43.478 0.00 0.00 33.85 2.32
698 9350 1.066929 TGCTTGCATTGAGAGCGTCTA 60.067 47.619 3.06 0.00 39.23 2.59
2053 16945 1.581934 ATCAATGGGTCGTGTATGCG 58.418 50.000 0.00 0.00 0.00 4.73
2173 17072 4.213906 GCATTGAACAAAATTTGGAGTGGG 59.786 41.667 10.71 0.00 34.12 4.61
2176 17075 6.705825 GGTAAGCATTGAACAAAATTTGGAGT 59.294 34.615 10.71 0.00 34.12 3.85
2177 17076 6.147656 GGGTAAGCATTGAACAAAATTTGGAG 59.852 38.462 10.71 0.00 34.12 3.86
2233 17137 4.022589 CCAATCATGCCTTATGTGATCCAC 60.023 45.833 0.00 0.00 38.01 4.02
2266 17172 3.423154 GCCTGGCTCGTTGGTTCG 61.423 66.667 12.43 0.00 0.00 3.95
2289 17195 4.080526 GTGAAGGGCCTTACCTGATTCTTA 60.081 45.833 20.97 0.00 40.87 2.10
2300 17206 2.704065 GCCTACATAGTGAAGGGCCTTA 59.296 50.000 20.97 3.35 34.19 2.69
2301 17207 1.490910 GCCTACATAGTGAAGGGCCTT 59.509 52.381 21.09 21.09 34.19 4.35
2302 17208 1.132500 GCCTACATAGTGAAGGGCCT 58.868 55.000 0.00 0.00 34.19 5.19
2303 17209 3.708013 GCCTACATAGTGAAGGGCC 57.292 57.895 0.00 0.00 34.19 5.80
2305 17211 3.644966 TTTGGCCTACATAGTGAAGGG 57.355 47.619 3.32 0.00 0.00 3.95
2306 17212 4.396166 CACTTTTGGCCTACATAGTGAAGG 59.604 45.833 3.32 0.00 41.19 3.46
2307 17213 4.396166 CCACTTTTGGCCTACATAGTGAAG 59.604 45.833 18.48 7.60 41.19 3.02
2308 17214 4.331968 CCACTTTTGGCCTACATAGTGAA 58.668 43.478 18.48 0.00 41.19 3.18
2309 17215 3.950397 CCACTTTTGGCCTACATAGTGA 58.050 45.455 18.48 0.00 41.19 3.41
2322 17228 4.320608 AGTGTATTTGGCACCACTTTTG 57.679 40.909 0.00 0.00 34.64 2.44
2325 17231 3.069443 CCAAAGTGTATTTGGCACCACTT 59.931 43.478 12.56 12.56 46.92 3.16
2326 17232 2.627699 CCAAAGTGTATTTGGCACCACT 59.372 45.455 6.45 0.00 41.95 4.00
2327 17233 3.025287 CCAAAGTGTATTTGGCACCAC 57.975 47.619 6.45 0.00 41.95 4.16
2334 17240 5.757320 TGCCAAATGAACCAAAGTGTATTTG 59.243 36.000 0.00 0.00 38.53 2.32
2335 17241 5.757808 GTGCCAAATGAACCAAAGTGTATTT 59.242 36.000 0.00 0.00 0.00 1.40
2336 17242 5.296748 GTGCCAAATGAACCAAAGTGTATT 58.703 37.500 0.00 0.00 0.00 1.89
2337 17243 4.262420 GGTGCCAAATGAACCAAAGTGTAT 60.262 41.667 0.00 0.00 33.94 2.29
2338 17244 3.068873 GGTGCCAAATGAACCAAAGTGTA 59.931 43.478 0.00 0.00 33.94 2.90
2339 17245 2.158971 GGTGCCAAATGAACCAAAGTGT 60.159 45.455 0.00 0.00 33.94 3.55
2340 17246 2.482864 GGTGCCAAATGAACCAAAGTG 58.517 47.619 0.00 0.00 33.94 3.16
2341 17247 1.068434 CGGTGCCAAATGAACCAAAGT 59.932 47.619 6.20 0.00 33.30 2.66
2342 17248 1.339610 TCGGTGCCAAATGAACCAAAG 59.660 47.619 6.20 0.00 33.30 2.77
2343 17249 1.403814 TCGGTGCCAAATGAACCAAA 58.596 45.000 6.20 0.00 33.30 3.28
2344 17250 1.271934 CATCGGTGCCAAATGAACCAA 59.728 47.619 0.00 0.00 33.30 3.67
2345 17251 0.887247 CATCGGTGCCAAATGAACCA 59.113 50.000 0.00 0.00 33.30 3.67
2346 17252 0.458370 GCATCGGTGCCAAATGAACC 60.458 55.000 10.29 0.00 45.76 3.62
2347 17253 3.034569 GCATCGGTGCCAAATGAAC 57.965 52.632 10.29 0.00 45.76 3.18
2357 17263 2.484062 GCAATGGAGGGCATCGGTG 61.484 63.158 0.00 0.00 0.00 4.94
2358 17264 2.124151 GCAATGGAGGGCATCGGT 60.124 61.111 0.00 0.00 0.00 4.69
2359 17265 2.908940 GGCAATGGAGGGCATCGG 60.909 66.667 0.00 0.00 0.00 4.18
2360 17266 2.908940 GGGCAATGGAGGGCATCG 60.909 66.667 0.00 0.00 0.00 3.84
2361 17267 1.831286 CTGGGCAATGGAGGGCATC 60.831 63.158 0.00 0.00 0.00 3.91
2362 17268 2.281091 CTGGGCAATGGAGGGCAT 59.719 61.111 0.00 0.00 0.00 4.40
2363 17269 4.764771 GCTGGGCAATGGAGGGCA 62.765 66.667 0.00 0.00 0.00 5.36
2367 17273 4.431131 ACCGGCTGGGCAATGGAG 62.431 66.667 18.00 0.00 40.62 3.86
2368 17274 4.738998 CACCGGCTGGGCAATGGA 62.739 66.667 18.00 0.00 40.62 3.41
2375 17281 1.768684 ATAGTATGGCACCGGCTGGG 61.769 60.000 18.00 6.08 40.75 4.45
2376 17282 0.108585 AATAGTATGGCACCGGCTGG 59.891 55.000 11.02 11.02 40.87 4.85
2377 17283 1.967319 AAATAGTATGGCACCGGCTG 58.033 50.000 0.00 0.00 40.87 4.85
2378 17284 2.729028 AAAATAGTATGGCACCGGCT 57.271 45.000 0.00 0.00 40.87 5.52
2395 17301 2.060050 TGCTTCGGTTCCCTGAAAAA 57.940 45.000 0.00 0.00 0.00 1.94
2396 17302 1.953686 CTTGCTTCGGTTCCCTGAAAA 59.046 47.619 0.00 0.00 0.00 2.29
2397 17303 1.133915 ACTTGCTTCGGTTCCCTGAAA 60.134 47.619 0.00 0.00 0.00 2.69
2398 17304 0.472471 ACTTGCTTCGGTTCCCTGAA 59.528 50.000 0.00 0.00 0.00 3.02
2399 17305 0.472471 AACTTGCTTCGGTTCCCTGA 59.528 50.000 0.00 0.00 0.00 3.86
2400 17306 0.593128 CAACTTGCTTCGGTTCCCTG 59.407 55.000 0.00 0.00 0.00 4.45
2401 17307 0.537371 CCAACTTGCTTCGGTTCCCT 60.537 55.000 0.00 0.00 0.00 4.20
2402 17308 0.822121 ACCAACTTGCTTCGGTTCCC 60.822 55.000 0.00 0.00 0.00 3.97
2403 17309 0.310854 CACCAACTTGCTTCGGTTCC 59.689 55.000 0.00 0.00 0.00 3.62
2404 17310 0.317854 GCACCAACTTGCTTCGGTTC 60.318 55.000 0.00 0.00 39.59 3.62
2405 17311 1.034838 TGCACCAACTTGCTTCGGTT 61.035 50.000 0.00 0.00 43.41 4.44
2406 17312 1.453015 TGCACCAACTTGCTTCGGT 60.453 52.632 0.00 0.00 43.41 4.69
2407 17313 1.008538 GTGCACCAACTTGCTTCGG 60.009 57.895 5.22 0.00 43.41 4.30
2408 17314 1.008538 GGTGCACCAACTTGCTTCG 60.009 57.895 31.23 0.00 43.41 3.79
2409 17315 2.114638 TGGTGCACCAACTTGCTTC 58.885 52.632 36.10 5.75 44.35 3.86
2410 17316 4.353325 TGGTGCACCAACTTGCTT 57.647 50.000 36.10 0.00 44.35 3.91
2423 17329 1.098050 GCTAGAAGTGGGCATTGGTG 58.902 55.000 0.00 0.00 0.00 4.17
2424 17330 0.698238 TGCTAGAAGTGGGCATTGGT 59.302 50.000 0.00 0.00 0.00 3.67
2425 17331 2.062971 ATGCTAGAAGTGGGCATTGG 57.937 50.000 0.00 0.00 43.02 3.16
2428 17334 1.341285 TGCAATGCTAGAAGTGGGCAT 60.341 47.619 6.82 0.00 46.79 4.40
2429 17335 0.038021 TGCAATGCTAGAAGTGGGCA 59.962 50.000 6.82 0.00 40.32 5.36
2430 17336 1.176527 TTGCAATGCTAGAAGTGGGC 58.823 50.000 6.82 0.00 0.00 5.36
2431 17337 5.581126 TTTATTGCAATGCTAGAAGTGGG 57.419 39.130 22.27 0.00 0.00 4.61
2432 17338 9.188588 CATATTTTATTGCAATGCTAGAAGTGG 57.811 33.333 22.27 0.00 0.00 4.00
2433 17339 9.740239 ACATATTTTATTGCAATGCTAGAAGTG 57.260 29.630 22.27 12.52 0.00 3.16
2453 17359 8.450964 CGTTGATCCTTCACAGTTTAACATATT 58.549 33.333 0.00 0.00 0.00 1.28
2454 17360 7.065803 CCGTTGATCCTTCACAGTTTAACATAT 59.934 37.037 0.00 0.00 0.00 1.78
2455 17361 6.370442 CCGTTGATCCTTCACAGTTTAACATA 59.630 38.462 0.00 0.00 0.00 2.29
2456 17362 5.181245 CCGTTGATCCTTCACAGTTTAACAT 59.819 40.000 0.00 0.00 0.00 2.71
2457 17363 4.513692 CCGTTGATCCTTCACAGTTTAACA 59.486 41.667 0.00 0.00 0.00 2.41
2458 17364 4.083484 CCCGTTGATCCTTCACAGTTTAAC 60.083 45.833 0.00 0.00 0.00 2.01
2459 17365 4.069304 CCCGTTGATCCTTCACAGTTTAA 58.931 43.478 0.00 0.00 0.00 1.52
2460 17366 3.325425 TCCCGTTGATCCTTCACAGTTTA 59.675 43.478 0.00 0.00 0.00 2.01
2461 17367 2.105821 TCCCGTTGATCCTTCACAGTTT 59.894 45.455 0.00 0.00 0.00 2.66
2462 17368 1.697432 TCCCGTTGATCCTTCACAGTT 59.303 47.619 0.00 0.00 0.00 3.16
2463 17369 1.348064 TCCCGTTGATCCTTCACAGT 58.652 50.000 0.00 0.00 0.00 3.55
2464 17370 2.093500 TCATCCCGTTGATCCTTCACAG 60.093 50.000 0.00 0.00 0.00 3.66
2465 17371 1.905894 TCATCCCGTTGATCCTTCACA 59.094 47.619 0.00 0.00 0.00 3.58
2466 17372 2.168521 TCTCATCCCGTTGATCCTTCAC 59.831 50.000 0.00 0.00 0.00 3.18
2467 17373 2.432146 CTCTCATCCCGTTGATCCTTCA 59.568 50.000 0.00 0.00 0.00 3.02
2468 17374 2.695666 TCTCTCATCCCGTTGATCCTTC 59.304 50.000 0.00 0.00 0.00 3.46
2469 17375 2.697751 CTCTCTCATCCCGTTGATCCTT 59.302 50.000 0.00 0.00 0.00 3.36
2470 17376 2.091610 TCTCTCTCATCCCGTTGATCCT 60.092 50.000 0.00 0.00 0.00 3.24
2471 17377 2.295909 CTCTCTCTCATCCCGTTGATCC 59.704 54.545 0.00 0.00 0.00 3.36
2472 17378 2.295909 CCTCTCTCTCATCCCGTTGATC 59.704 54.545 0.00 0.00 0.00 2.92
2473 17379 2.091610 TCCTCTCTCTCATCCCGTTGAT 60.092 50.000 0.00 0.00 0.00 2.57
2474 17380 1.285078 TCCTCTCTCTCATCCCGTTGA 59.715 52.381 0.00 0.00 0.00 3.18
2475 17381 1.680735 CTCCTCTCTCTCATCCCGTTG 59.319 57.143 0.00 0.00 0.00 4.10
2476 17382 1.410932 CCTCCTCTCTCTCATCCCGTT 60.411 57.143 0.00 0.00 0.00 4.44
2477 17383 0.184933 CCTCCTCTCTCTCATCCCGT 59.815 60.000 0.00 0.00 0.00 5.28
2478 17384 0.476338 TCCTCCTCTCTCTCATCCCG 59.524 60.000 0.00 0.00 0.00 5.14
2479 17385 1.499007 AGTCCTCCTCTCTCTCATCCC 59.501 57.143 0.00 0.00 0.00 3.85
2480 17386 3.650942 TCTAGTCCTCCTCTCTCTCATCC 59.349 52.174 0.00 0.00 0.00 3.51
2481 17387 4.593206 TCTCTAGTCCTCCTCTCTCTCATC 59.407 50.000 0.00 0.00 0.00 2.92
2482 17388 4.566837 TCTCTAGTCCTCCTCTCTCTCAT 58.433 47.826 0.00 0.00 0.00 2.90
2483 17389 4.002256 TCTCTAGTCCTCCTCTCTCTCA 57.998 50.000 0.00 0.00 0.00 3.27
2484 17390 4.409247 AGTTCTCTAGTCCTCCTCTCTCTC 59.591 50.000 0.00 0.00 0.00 3.20
2485 17391 4.371681 AGTTCTCTAGTCCTCCTCTCTCT 58.628 47.826 0.00 0.00 0.00 3.10
2486 17392 4.704965 GAGTTCTCTAGTCCTCCTCTCTC 58.295 52.174 0.00 0.00 0.00 3.20
2487 17393 3.134081 CGAGTTCTCTAGTCCTCCTCTCT 59.866 52.174 0.00 0.00 0.00 3.10
2488 17394 3.118519 ACGAGTTCTCTAGTCCTCCTCTC 60.119 52.174 0.00 0.00 0.00 3.20
2489 17395 2.841881 ACGAGTTCTCTAGTCCTCCTCT 59.158 50.000 0.00 0.00 0.00 3.69
2490 17396 3.271055 ACGAGTTCTCTAGTCCTCCTC 57.729 52.381 0.00 0.00 0.00 3.71
2491 17397 3.430651 CGTACGAGTTCTCTAGTCCTCCT 60.431 52.174 10.44 0.00 32.23 3.69
2492 17398 2.865551 CGTACGAGTTCTCTAGTCCTCC 59.134 54.545 10.44 0.00 32.23 4.30
2493 17399 3.779759 TCGTACGAGTTCTCTAGTCCTC 58.220 50.000 15.28 0.00 32.23 3.71
2494 17400 3.883830 TCGTACGAGTTCTCTAGTCCT 57.116 47.619 15.28 0.00 32.23 3.85
2495 17401 3.309410 CCTTCGTACGAGTTCTCTAGTCC 59.691 52.174 18.64 0.00 32.23 3.85
2496 17402 4.180057 TCCTTCGTACGAGTTCTCTAGTC 58.820 47.826 18.64 0.00 32.23 2.59
2497 17403 4.199432 TCCTTCGTACGAGTTCTCTAGT 57.801 45.455 18.64 0.00 34.21 2.57
2498 17404 5.293814 TCAATCCTTCGTACGAGTTCTCTAG 59.706 44.000 18.64 10.72 0.00 2.43
2499 17405 5.181009 TCAATCCTTCGTACGAGTTCTCTA 58.819 41.667 18.64 0.38 0.00 2.43
2500 17406 4.008330 TCAATCCTTCGTACGAGTTCTCT 58.992 43.478 18.64 0.20 0.00 3.10
2501 17407 4.344448 CTCAATCCTTCGTACGAGTTCTC 58.656 47.826 18.64 0.00 0.00 2.87
2502 17408 3.128938 CCTCAATCCTTCGTACGAGTTCT 59.871 47.826 18.64 2.48 0.00 3.01
2503 17409 3.436496 CCTCAATCCTTCGTACGAGTTC 58.564 50.000 18.64 0.00 0.00 3.01
2504 17410 2.165845 CCCTCAATCCTTCGTACGAGTT 59.834 50.000 18.64 9.38 0.00 3.01
2505 17411 1.749634 CCCTCAATCCTTCGTACGAGT 59.250 52.381 18.64 3.52 0.00 4.18
2506 17412 2.022195 TCCCTCAATCCTTCGTACGAG 58.978 52.381 18.64 12.21 0.00 4.18
2507 17413 2.133281 TCCCTCAATCCTTCGTACGA 57.867 50.000 15.28 15.28 0.00 3.43
2508 17414 2.953466 TTCCCTCAATCCTTCGTACG 57.047 50.000 9.53 9.53 0.00 3.67
2509 17415 2.937149 GCTTTCCCTCAATCCTTCGTAC 59.063 50.000 0.00 0.00 0.00 3.67
2510 17416 2.838202 AGCTTTCCCTCAATCCTTCGTA 59.162 45.455 0.00 0.00 0.00 3.43
2511 17417 1.630878 AGCTTTCCCTCAATCCTTCGT 59.369 47.619 0.00 0.00 0.00 3.85
2512 17418 2.012673 CAGCTTTCCCTCAATCCTTCG 58.987 52.381 0.00 0.00 0.00 3.79
2513 17419 2.373224 CCAGCTTTCCCTCAATCCTTC 58.627 52.381 0.00 0.00 0.00 3.46
2514 17420 1.618074 GCCAGCTTTCCCTCAATCCTT 60.618 52.381 0.00 0.00 0.00 3.36
2515 17421 0.033699 GCCAGCTTTCCCTCAATCCT 60.034 55.000 0.00 0.00 0.00 3.24
2516 17422 0.033699 AGCCAGCTTTCCCTCAATCC 60.034 55.000 0.00 0.00 0.00 3.01
2517 17423 1.475682 CAAGCCAGCTTTCCCTCAATC 59.524 52.381 1.19 0.00 33.42 2.67
2518 17424 1.553706 CAAGCCAGCTTTCCCTCAAT 58.446 50.000 1.19 0.00 33.42 2.57
2519 17425 1.181098 GCAAGCCAGCTTTCCCTCAA 61.181 55.000 1.19 0.00 33.42 3.02
2520 17426 1.604593 GCAAGCCAGCTTTCCCTCA 60.605 57.895 1.19 0.00 33.42 3.86
2521 17427 1.303970 AGCAAGCCAGCTTTCCCTC 60.304 57.895 1.19 0.00 43.70 4.30
2522 17428 1.303970 GAGCAAGCCAGCTTTCCCT 60.304 57.895 1.19 0.00 46.75 4.20
2523 17429 2.346541 GGAGCAAGCCAGCTTTCCC 61.347 63.158 10.74 5.57 46.75 3.97
2524 17430 0.969409 ATGGAGCAAGCCAGCTTTCC 60.969 55.000 13.83 13.83 46.75 3.13
2525 17431 0.893447 AATGGAGCAAGCCAGCTTTC 59.107 50.000 1.19 0.00 46.75 2.62
2526 17432 1.345063 AAATGGAGCAAGCCAGCTTT 58.655 45.000 1.19 0.00 46.75 3.51
2527 17433 1.345063 AAAATGGAGCAAGCCAGCTT 58.655 45.000 0.00 0.00 46.75 3.74
2529 17435 3.921257 AAAAATGGAGCAAGCCAGC 57.079 47.368 0.00 0.00 42.15 4.85
2544 17450 7.633193 GTGGGACCACATGTATACATAAAAA 57.367 36.000 17.86 0.00 45.53 1.94
2565 17471 1.838112 TGCAGCCCATAGAAAAGTGG 58.162 50.000 0.00 0.00 35.22 4.00
2566 17472 3.367703 CCTTTGCAGCCCATAGAAAAGTG 60.368 47.826 0.00 0.00 0.00 3.16
2567 17473 2.827921 CCTTTGCAGCCCATAGAAAAGT 59.172 45.455 0.00 0.00 0.00 2.66
2568 17474 2.417787 GCCTTTGCAGCCCATAGAAAAG 60.418 50.000 0.00 0.00 37.47 2.27
2569 17475 1.550072 GCCTTTGCAGCCCATAGAAAA 59.450 47.619 0.00 0.00 37.47 2.29
2570 17476 1.185315 GCCTTTGCAGCCCATAGAAA 58.815 50.000 0.00 0.00 37.47 2.52
2571 17477 0.039472 TGCCTTTGCAGCCCATAGAA 59.961 50.000 0.00 0.00 44.23 2.10
2572 17478 1.690616 TGCCTTTGCAGCCCATAGA 59.309 52.632 0.00 0.00 44.23 1.98
2573 17479 4.342427 TGCCTTTGCAGCCCATAG 57.658 55.556 0.00 0.00 44.23 2.23
2590 17496 1.295423 GGCACCGGTCACACTATGT 59.705 57.895 2.59 0.00 0.00 2.29
2591 17497 0.107703 ATGGCACCGGTCACACTATG 60.108 55.000 2.59 0.00 0.00 2.23
2592 17498 1.412710 CTATGGCACCGGTCACACTAT 59.587 52.381 2.59 0.43 0.00 2.12
2593 17499 0.821517 CTATGGCACCGGTCACACTA 59.178 55.000 2.59 0.00 0.00 2.74
2594 17500 0.902984 TCTATGGCACCGGTCACACT 60.903 55.000 2.59 0.00 0.00 3.55
2595 17501 0.036765 TTCTATGGCACCGGTCACAC 60.037 55.000 2.59 0.00 0.00 3.82
2596 17502 0.687920 TTTCTATGGCACCGGTCACA 59.312 50.000 2.59 7.26 0.00 3.58
2597 17503 2.038387 ATTTCTATGGCACCGGTCAC 57.962 50.000 2.59 0.00 0.00 3.67
2598 17504 2.799126 AATTTCTATGGCACCGGTCA 57.201 45.000 2.59 0.00 0.00 4.02
2599 17505 3.279434 AGAAATTTCTATGGCACCGGTC 58.721 45.455 19.17 0.00 35.34 4.79
2600 17506 3.279434 GAGAAATTTCTATGGCACCGGT 58.721 45.455 20.51 0.00 37.73 5.28
2601 17507 3.278574 TGAGAAATTTCTATGGCACCGG 58.721 45.455 20.51 0.00 37.73 5.28
2602 17508 4.191544 TCTGAGAAATTTCTATGGCACCG 58.808 43.478 20.51 4.35 37.73 4.94
2603 17509 4.036144 GCTCTGAGAAATTTCTATGGCACC 59.964 45.833 20.51 7.21 37.73 5.01
2604 17510 4.637534 TGCTCTGAGAAATTTCTATGGCAC 59.362 41.667 20.51 7.90 37.73 5.01
2605 17511 4.847198 TGCTCTGAGAAATTTCTATGGCA 58.153 39.130 20.51 21.60 37.73 4.92
2606 17512 5.333952 CGATGCTCTGAGAAATTTCTATGGC 60.334 44.000 20.51 19.68 37.73 4.40
2607 17513 5.987953 TCGATGCTCTGAGAAATTTCTATGG 59.012 40.000 20.51 12.98 37.73 2.74
2608 17514 7.511463 CATCGATGCTCTGAGAAATTTCTATG 58.489 38.462 20.51 15.29 37.73 2.23
2609 17515 7.655236 CATCGATGCTCTGAGAAATTTCTAT 57.345 36.000 20.51 9.41 37.73 1.98
2611 17517 5.987777 CATCGATGCTCTGAGAAATTTCT 57.012 39.130 20.60 20.60 41.00 2.52
2626 17532 6.748333 AATATTACAGATTGGGCATCGATG 57.252 37.500 21.27 21.27 36.93 3.84
2627 17533 7.765695 AAAATATTACAGATTGGGCATCGAT 57.234 32.000 0.00 0.00 36.93 3.59
2628 17534 8.684386 TTAAAATATTACAGATTGGGCATCGA 57.316 30.769 0.00 0.00 36.93 3.59
2629 17535 9.345517 CATTAAAATATTACAGATTGGGCATCG 57.654 33.333 0.00 0.00 36.93 3.84
2633 17539 9.908152 GGTACATTAAAATATTACAGATTGGGC 57.092 33.333 0.00 0.00 0.00 5.36
2637 17543 8.789762 GCCCGGTACATTAAAATATTACAGATT 58.210 33.333 0.00 0.00 0.00 2.40
2638 17544 7.940137 TGCCCGGTACATTAAAATATTACAGAT 59.060 33.333 0.00 0.00 0.00 2.90
2639 17545 7.227116 GTGCCCGGTACATTAAAATATTACAGA 59.773 37.037 0.00 0.00 0.00 3.41
2640 17546 7.357303 GTGCCCGGTACATTAAAATATTACAG 58.643 38.462 0.00 0.00 0.00 2.74
2641 17547 6.262720 GGTGCCCGGTACATTAAAATATTACA 59.737 38.462 8.03 0.00 0.00 2.41
2642 17548 6.566376 CGGTGCCCGGTACATTAAAATATTAC 60.566 42.308 8.03 0.00 44.15 1.89
2643 17549 5.469421 CGGTGCCCGGTACATTAAAATATTA 59.531 40.000 8.03 0.00 44.15 0.98
2644 17550 4.276431 CGGTGCCCGGTACATTAAAATATT 59.724 41.667 8.03 0.00 44.15 1.28
2645 17551 3.816523 CGGTGCCCGGTACATTAAAATAT 59.183 43.478 8.03 0.00 44.15 1.28
2646 17552 3.204526 CGGTGCCCGGTACATTAAAATA 58.795 45.455 8.03 0.00 44.15 1.40
2647 17553 2.018515 CGGTGCCCGGTACATTAAAAT 58.981 47.619 8.03 0.00 44.15 1.82
2648 17554 1.451067 CGGTGCCCGGTACATTAAAA 58.549 50.000 8.03 0.00 44.15 1.52
2649 17555 2.742530 GATCGGTGCCCGGTACATTAAA 60.743 50.000 8.03 0.00 42.08 1.52
2650 17556 1.202557 GATCGGTGCCCGGTACATTAA 60.203 52.381 8.03 0.00 42.08 1.40
2651 17557 0.390124 GATCGGTGCCCGGTACATTA 59.610 55.000 8.03 0.00 42.08 1.90
2652 17558 1.145377 GATCGGTGCCCGGTACATT 59.855 57.895 8.03 0.00 42.08 2.71
2653 17559 2.061578 TGATCGGTGCCCGGTACAT 61.062 57.895 8.03 0.00 42.08 2.29
2654 17560 2.680707 TGATCGGTGCCCGGTACA 60.681 61.111 8.03 0.00 42.08 2.90
2655 17561 2.202837 GTGATCGGTGCCCGGTAC 60.203 66.667 12.77 0.00 42.08 3.34
2656 17562 0.756070 TATGTGATCGGTGCCCGGTA 60.756 55.000 12.77 0.00 42.08 4.02
2657 17563 2.028125 CTATGTGATCGGTGCCCGGT 62.028 60.000 12.77 6.45 46.09 5.28
2659 17565 0.875908 CACTATGTGATCGGTGCCCG 60.876 60.000 7.24 7.24 41.47 6.13
2660 17566 0.532862 CCACTATGTGATCGGTGCCC 60.533 60.000 0.00 0.00 35.23 5.36
2661 17567 0.464036 TCCACTATGTGATCGGTGCC 59.536 55.000 0.00 0.00 35.23 5.01
2662 17568 2.205074 CTTCCACTATGTGATCGGTGC 58.795 52.381 0.00 0.00 35.23 5.01
2663 17569 2.826428 CCTTCCACTATGTGATCGGTG 58.174 52.381 0.00 0.00 35.23 4.94
2664 17570 1.139058 GCCTTCCACTATGTGATCGGT 59.861 52.381 0.00 0.00 35.23 4.69
2665 17571 1.541233 GGCCTTCCACTATGTGATCGG 60.541 57.143 0.00 0.00 35.23 4.18
2666 17572 1.414181 AGGCCTTCCACTATGTGATCG 59.586 52.381 0.00 0.00 35.23 3.69
2667 17573 4.503991 CCTTAGGCCTTCCACTATGTGATC 60.504 50.000 12.58 0.00 35.23 2.92
2668 17574 3.392616 CCTTAGGCCTTCCACTATGTGAT 59.607 47.826 12.58 0.00 35.23 3.06
2669 17575 2.771943 CCTTAGGCCTTCCACTATGTGA 59.228 50.000 12.58 0.00 35.23 3.58
2670 17576 2.505819 ACCTTAGGCCTTCCACTATGTG 59.494 50.000 12.58 0.00 33.74 3.21
2671 17577 2.846950 ACCTTAGGCCTTCCACTATGT 58.153 47.619 12.58 0.00 33.74 2.29
2672 17578 3.933861 AACCTTAGGCCTTCCACTATG 57.066 47.619 12.58 0.00 33.74 2.23
2673 17579 3.715315 GGTAACCTTAGGCCTTCCACTAT 59.285 47.826 12.58 0.00 33.74 2.12
2674 17580 3.109928 GGTAACCTTAGGCCTTCCACTA 58.890 50.000 12.58 0.00 33.74 2.74
2675 17581 1.914108 GGTAACCTTAGGCCTTCCACT 59.086 52.381 12.58 0.00 33.74 4.00
2676 17582 2.414994 GGTAACCTTAGGCCTTCCAC 57.585 55.000 12.58 0.46 33.74 4.02
2827 17750 1.963515 GTCATGAAAAAGCACCACCCT 59.036 47.619 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.