Multiple sequence alignment - TraesCS2A01G498100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G498100 chr2A 100.000 8794 0 0 1 8794 728598336 728607129 0.000000e+00 16240.0
1 TraesCS2A01G498100 chr2A 82.524 618 69 23 7480 8091 728613372 728613956 2.830000e-139 507.0
2 TraesCS2A01G498100 chr2A 94.326 141 7 1 6962 7102 46335904 46336043 1.920000e-51 215.0
3 TraesCS2A01G498100 chr2A 92.568 148 9 2 6966 7113 65193120 65192975 2.490000e-50 211.0
4 TraesCS2A01G498100 chr2A 98.039 102 2 0 4229 4330 68155923 68155822 2.520000e-40 178.0
5 TraesCS2A01G498100 chr2A 96.117 103 4 0 4227 4329 660286770 660286872 1.520000e-37 169.0
6 TraesCS2A01G498100 chr2B 94.941 4289 126 33 22 4233 720574156 720578430 0.000000e+00 6634.0
7 TraesCS2A01G498100 chr2B 97.276 1909 47 3 4327 6231 720578429 720580336 0.000000e+00 3232.0
8 TraesCS2A01G498100 chr2B 93.912 1002 38 8 7094 8092 720581171 720582152 0.000000e+00 1491.0
9 TraesCS2A01G498100 chr2B 96.076 688 17 9 6252 6932 720580463 720581147 0.000000e+00 1112.0
10 TraesCS2A01G498100 chr2B 87.737 579 51 11 7428 7992 720619775 720620347 0.000000e+00 658.0
11 TraesCS2A01G498100 chr2B 87.414 580 54 10 7428 7993 720625151 720625725 0.000000e+00 649.0
12 TraesCS2A01G498100 chr2B 86.320 519 53 11 7428 7937 720637487 720637996 4.640000e-152 549.0
13 TraesCS2A01G498100 chr2B 88.889 360 33 7 8438 8794 720633736 720634091 3.770000e-118 436.0
14 TraesCS2A01G498100 chr2B 87.258 361 38 7 8438 8794 720638768 720639124 1.060000e-108 405.0
15 TraesCS2A01G498100 chr2B 86.080 352 45 4 8438 8788 720621385 720621733 8.340000e-100 375.0
16 TraesCS2A01G498100 chr2B 85.340 382 33 10 7428 7801 720642534 720642900 3.000000e-99 374.0
17 TraesCS2A01G498100 chr2B 93.671 237 13 2 8203 8439 720633418 720633652 3.910000e-93 353.0
18 TraesCS2A01G498100 chr2B 93.671 237 12 3 8203 8439 720621068 720621301 1.400000e-92 351.0
19 TraesCS2A01G498100 chr2B 92.827 237 15 2 8203 8439 720638450 720638684 8.450000e-90 342.0
20 TraesCS2A01G498100 chr2B 85.971 278 33 6 8163 8439 720584663 720584935 8.640000e-75 292.0
21 TraesCS2A01G498100 chr2B 86.207 261 30 5 8537 8794 720586611 720586868 2.420000e-70 278.0
22 TraesCS2A01G498100 chr2B 84.175 297 30 12 8144 8438 720582150 720582431 1.120000e-68 272.0
23 TraesCS2A01G498100 chr2B 96.970 132 4 0 6969 7100 545760514 545760383 1.150000e-53 222.0
24 TraesCS2A01G498100 chr2B 92.667 150 8 3 6966 7114 389469630 389469483 6.920000e-51 213.0
25 TraesCS2A01G498100 chr2B 84.141 227 21 10 7815 8028 720640215 720640439 1.160000e-48 206.0
26 TraesCS2A01G498100 chr2B 80.511 313 22 14 7723 8020 720622765 720623053 4.160000e-48 204.0
27 TraesCS2A01G498100 chr2B 96.364 110 1 3 8438 8546 720585019 720585126 2.520000e-40 178.0
28 TraesCS2A01G498100 chr2D 97.490 1912 39 5 4327 6234 593731499 593733405 0.000000e+00 3256.0
29 TraesCS2A01G498100 chr2D 96.731 1927 30 7 808 2728 593728125 593730024 0.000000e+00 3179.0
30 TraesCS2A01G498100 chr2D 95.740 1479 36 8 2777 4235 593730027 593731498 0.000000e+00 2357.0
31 TraesCS2A01G498100 chr2D 92.970 1010 44 12 7094 8091 593734252 593735246 0.000000e+00 1447.0
32 TraesCS2A01G498100 chr2D 96.561 727 16 5 6252 6971 593733530 593734254 0.000000e+00 1195.0
33 TraesCS2A01G498100 chr2D 89.985 679 27 19 22 660 593726603 593727280 0.000000e+00 839.0
34 TraesCS2A01G498100 chr2D 81.818 308 18 21 7727 8020 593737239 593737522 3.190000e-54 224.0
35 TraesCS2A01G498100 chr2D 95.238 105 5 0 4224 4328 445894876 445894980 5.460000e-37 167.0
36 TraesCS2A01G498100 chr3A 96.350 137 5 0 6968 7104 598561952 598561816 8.880000e-55 226.0
37 TraesCS2A01G498100 chr3A 100.000 28 0 0 8122 8149 448705038 448705065 1.600000e-02 52.8
38 TraesCS2A01G498100 chr4B 96.296 135 5 0 6969 7103 99436916 99437050 1.150000e-53 222.0
39 TraesCS2A01G498100 chr4B 93.197 147 10 0 6969 7115 63765696 63765842 5.350000e-52 217.0
40 TraesCS2A01G498100 chr7B 94.928 138 7 0 6964 7101 505938523 505938660 5.350000e-52 217.0
41 TraesCS2A01G498100 chr7B 94.393 107 6 0 4231 4337 143328200 143328306 1.960000e-36 165.0
42 TraesCS2A01G498100 chr7B 93.578 109 7 0 4227 4335 134634116 134634224 7.060000e-36 163.0
43 TraesCS2A01G498100 chr3B 93.793 145 7 2 6969 7113 20356565 20356707 5.350000e-52 217.0
44 TraesCS2A01G498100 chr7A 96.190 105 3 1 4224 4328 205167867 205167764 4.220000e-38 171.0
45 TraesCS2A01G498100 chr6B 95.283 106 3 2 4228 4332 710231541 710231645 5.460000e-37 167.0
46 TraesCS2A01G498100 chr5A 90.756 119 9 2 4219 4335 448616819 448616937 3.290000e-34 158.0
47 TraesCS2A01G498100 chr5A 97.059 34 1 0 8122 8155 404225152 404225119 3.430000e-04 58.4
48 TraesCS2A01G498100 chr1B 91.453 117 7 3 4219 4334 301264470 301264584 3.290000e-34 158.0
49 TraesCS2A01G498100 chr1B 80.682 176 30 3 1338 1510 51611746 51611920 5.540000e-27 134.0
50 TraesCS2A01G498100 chr6A 100.000 28 0 0 8122 8149 261134186 261134159 1.600000e-02 52.8
51 TraesCS2A01G498100 chr5B 100.000 28 0 0 8122 8149 393292544 393292517 1.600000e-02 52.8
52 TraesCS2A01G498100 chr1D 100.000 28 0 0 8127 8154 390667610 390667583 1.600000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G498100 chr2A 728598336 728607129 8793 False 16240.000000 16240 100.000000 1 8794 1 chr2A.!!$F3 8793
1 TraesCS2A01G498100 chr2A 728613372 728613956 584 False 507.000000 507 82.524000 7480 8091 1 chr2A.!!$F4 611
2 TraesCS2A01G498100 chr2B 720574156 720586868 12712 False 1686.125000 6634 91.865250 22 8794 8 chr2B.!!$F1 8772
3 TraesCS2A01G498100 chr2B 720619775 720625725 5950 False 447.400000 658 87.082600 7428 8788 5 chr2B.!!$F2 1360
4 TraesCS2A01G498100 chr2B 720633418 720642900 9482 False 380.714286 549 88.349429 7428 8794 7 chr2B.!!$F3 1366
5 TraesCS2A01G498100 chr2D 593726603 593737522 10919 False 1785.285714 3256 93.042143 22 8091 7 chr2D.!!$F2 8069

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
436 472 0.317160 CGGCGCAGGTGATTCCTATA 59.683 55.000 10.83 0.00 46.24 1.31 F
1259 1996 0.384309 GATAGACATCGTCACCGGCA 59.616 55.000 0.00 0.00 34.60 5.69 F
1930 2670 4.574674 TTTCAATGGGTATGAGCTCACT 57.425 40.909 20.97 11.03 0.00 3.41 F
2749 3503 0.250295 TCCGCATACTGGCTATTGGC 60.250 55.000 0.00 0.00 40.90 4.52 F
2860 3614 0.531974 TGCTATCCGGGAATTCGTGC 60.532 55.000 0.00 0.32 0.00 5.34 F
3415 4187 0.837691 AGTCCCTCCAGCATGTGTCA 60.838 55.000 0.00 0.00 0.00 3.58 F
4249 5029 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44 F
4742 5524 1.401539 GCAAACAGAATCCAACCGAGC 60.402 52.381 0.00 0.00 0.00 5.03 F
4853 5635 1.580994 GCCATACCCCCAACTTCCCT 61.581 60.000 0.00 0.00 0.00 4.20 F
5612 6394 5.687166 TTGGTGGAAGGACTTATTACGAT 57.313 39.130 0.00 0.00 0.00 3.73 F
6982 7882 0.172803 CTTGTTACTCCCTCCGTCCG 59.827 60.000 0.00 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1935 2675 8.359642 ACAACAGAAAATGTGCATGTAATAACT 58.640 29.630 0.00 0.00 43.00 2.24 R
2732 3486 0.880278 ACGCCAATAGCCAGTATGCG 60.880 55.000 0.00 0.00 38.73 4.73 R
3118 3883 1.078848 GGGCCTGTGTAGTCAGCTG 60.079 63.158 7.63 7.63 34.47 4.24 R
4311 5091 0.337082 TCATACTCCCTCCGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12 R
4312 5092 0.561184 ATCATACTCCCTCCGTCCCA 59.439 55.000 0.00 0.00 0.00 4.37 R
4313 5093 2.599408 TATCATACTCCCTCCGTCCC 57.401 55.000 0.00 0.00 0.00 4.46 R
6244 7028 0.673437 CCACACCACCACATGAAACC 59.327 55.000 0.00 0.00 0.00 3.27 R
6245 7029 1.066908 CACCACACCACCACATGAAAC 59.933 52.381 0.00 0.00 0.00 2.78 R
6248 7032 1.150308 CCACCACACCACCACATGA 59.850 57.895 0.00 0.00 0.00 3.07 R
7072 7972 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 R
8566 10448 0.179059 TCAAGCGGTGCTTCTGTTGA 60.179 50.000 0.16 0.00 46.77 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 0.543277 ACCACATGTCATCGCCATCT 59.457 50.000 0.00 0.00 0.00 2.90
169 205 4.179599 CCCTCCTCCCTCCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
197 233 3.680196 GCGCTTATCTCTCCCAGACTTTT 60.680 47.826 0.00 0.00 32.26 2.27
224 260 4.222847 CCTCGAACCCTAGCGGCC 62.223 72.222 0.00 0.00 33.26 6.13
225 261 3.458163 CTCGAACCCTAGCGGCCA 61.458 66.667 2.24 0.00 33.26 5.36
365 401 4.101448 CGGCCAGAACCCTCCCTG 62.101 72.222 2.24 0.00 0.00 4.45
436 472 0.317160 CGGCGCAGGTGATTCCTATA 59.683 55.000 10.83 0.00 46.24 1.31
609 647 1.951923 ATGCCATTCATGCCCCCTCA 61.952 55.000 0.00 0.00 33.26 3.86
651 691 2.738521 TCTCTGAGCGCGTTTGCC 60.739 61.111 8.43 0.00 38.08 4.52
667 707 2.685380 CCGTTCCCTGCTCTCCCT 60.685 66.667 0.00 0.00 0.00 4.20
669 709 2.286523 CGTTCCCTGCTCTCCCTGT 61.287 63.158 0.00 0.00 0.00 4.00
675 715 1.198713 CCTGCTCTCCCTGTGTATGT 58.801 55.000 0.00 0.00 0.00 2.29
681 721 1.079197 TCCCTGTGTATGTGCGCTG 60.079 57.895 9.73 0.00 0.00 5.18
718 758 6.924111 TGGAATCCTTCAGCTAAAATGTTTC 58.076 36.000 0.00 0.00 0.00 2.78
745 785 2.921634 TAGCAGTTCGTGTCAGCTAG 57.078 50.000 0.00 0.00 36.80 3.42
779 819 4.400529 TCGTAACAGCACCATCATATGT 57.599 40.909 1.90 0.00 0.00 2.29
938 1675 3.408288 TCGAACTTTTGGTTTTGACCG 57.592 42.857 0.00 0.00 38.41 4.79
1134 1871 4.465446 TCTCCTAGCCGCAGCCCT 62.465 66.667 0.00 0.00 41.25 5.19
1154 1891 3.766691 GCCCCGGAGTCGCAGTAA 61.767 66.667 0.73 0.00 34.56 2.24
1259 1996 0.384309 GATAGACATCGTCACCGGCA 59.616 55.000 0.00 0.00 34.60 5.69
1594 2331 5.473504 AGCTGAAGTGGGTAAATTGTAGTTG 59.526 40.000 0.00 0.00 0.00 3.16
1815 2553 6.597562 ACAGTTTAGGTGATTTGTGGACTAA 58.402 36.000 0.00 0.00 0.00 2.24
1930 2670 4.574674 TTTCAATGGGTATGAGCTCACT 57.425 40.909 20.97 11.03 0.00 3.41
1932 2672 5.692115 TTCAATGGGTATGAGCTCACTTA 57.308 39.130 20.97 5.65 0.00 2.24
1934 2674 6.252599 TCAATGGGTATGAGCTCACTTATT 57.747 37.500 20.97 12.33 0.00 1.40
1935 2675 7.373617 TCAATGGGTATGAGCTCACTTATTA 57.626 36.000 20.97 3.96 0.00 0.98
1936 2676 7.445121 TCAATGGGTATGAGCTCACTTATTAG 58.555 38.462 20.97 6.32 0.00 1.73
2732 3486 5.813672 TGTTTTATAACGCATGTCTACCTCC 59.186 40.000 0.00 0.00 37.06 4.30
2749 3503 0.250295 TCCGCATACTGGCTATTGGC 60.250 55.000 0.00 0.00 40.90 4.52
2774 3528 3.659786 TGTTCTGTATATGCCGGCATAC 58.340 45.455 43.28 35.33 41.09 2.39
2779 3533 2.290008 TGTATATGCCGGCATACAAGGG 60.290 50.000 43.28 0.00 41.09 3.95
2804 3558 5.157940 TCAGGATCCTCTTTCTTGTTCTG 57.842 43.478 12.69 0.00 0.00 3.02
2857 3611 1.597663 GTGTTGCTATCCGGGAATTCG 59.402 52.381 0.00 0.00 0.00 3.34
2860 3614 0.531974 TGCTATCCGGGAATTCGTGC 60.532 55.000 0.00 0.32 0.00 5.34
3142 3907 1.278127 TGACTACACAGGCCCTTAAGC 59.722 52.381 0.00 0.00 0.00 3.09
3148 3913 1.675641 CAGGCCCTTAAGCGTTGCT 60.676 57.895 0.00 0.00 42.56 3.91
3415 4187 0.837691 AGTCCCTCCAGCATGTGTCA 60.838 55.000 0.00 0.00 0.00 3.58
3448 4220 4.836175 TCTCCAGTTATTGTGTGGTCTACA 59.164 41.667 0.00 0.00 36.82 2.74
3465 4242 6.127338 TGGTCTACACTATGTCCTGATTCTTG 60.127 42.308 0.00 0.00 0.00 3.02
3493 4270 9.638176 AGTTGATTATTTCTATTCAGCTTCCAT 57.362 29.630 0.00 0.00 29.72 3.41
3769 4547 7.172190 CGTGAATCATCTATATTTCCTGTGCTT 59.828 37.037 0.00 0.00 0.00 3.91
3853 4631 4.055360 TGTGACACTAACAGGAATGTTCG 58.945 43.478 7.20 0.00 33.59 3.95
4116 4896 4.748600 GTGTAGGTTACTCGAATATTGGGC 59.251 45.833 0.00 0.00 0.00 5.36
4244 5024 7.657023 ACATATTAATATACTCCCTCCGTCC 57.343 40.000 7.65 0.00 0.00 4.79
4245 5025 6.610425 ACATATTAATATACTCCCTCCGTCCC 59.390 42.308 7.65 0.00 0.00 4.46
4246 5026 4.474303 TTAATATACTCCCTCCGTCCCA 57.526 45.455 0.00 0.00 0.00 4.37
4247 5027 3.339713 AATATACTCCCTCCGTCCCAA 57.660 47.619 0.00 0.00 0.00 4.12
4248 5028 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
4249 5029 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
4250 5030 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
4251 5031 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4252 5032 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4253 5033 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
4254 5034 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4255 5035 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4256 5036 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
4257 5037 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4258 5038 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4259 5039 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
4260 5040 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
4261 5041 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
4262 5042 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
4263 5043 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
4264 5044 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
4265 5045 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
4266 5046 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
4267 5047 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
4268 5048 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
4269 5049 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
4270 5050 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
4276 5056 8.788325 AAGTGTCTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
4277 5057 9.880157 AAGTGTCTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
4278 5058 9.530633 AGTGTCTCAACTTTGTACTAACTTTAG 57.469 33.333 0.00 0.00 36.82 1.85
4279 5059 9.310716 GTGTCTCAACTTTGTACTAACTTTAGT 57.689 33.333 6.85 6.85 45.39 2.24
4316 5096 9.816787 AATAAGGTTAAGACACTTATTTTGGGA 57.183 29.630 0.00 0.00 41.90 4.37
4317 5097 7.520451 AAGGTTAAGACACTTATTTTGGGAC 57.480 36.000 0.00 0.00 0.00 4.46
4318 5098 5.704053 AGGTTAAGACACTTATTTTGGGACG 59.296 40.000 0.00 0.00 0.00 4.79
4319 5099 5.106436 GGTTAAGACACTTATTTTGGGACGG 60.106 44.000 0.00 0.00 0.00 4.79
4320 5100 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
4321 5101 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
4322 5102 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4323 5103 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
4324 5104 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
4325 5105 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
4399 5179 4.156556 ACAATAGTTGCAAATGACGCAGAT 59.843 37.500 10.14 0.00 41.18 2.90
4573 5355 6.369890 TGTGCTAAGCAAAACAAATGAAAACA 59.630 30.769 0.00 0.00 41.47 2.83
4638 5420 7.348274 TCCAATACCTCTTGAGGATAATTGTCT 59.652 37.037 22.10 0.39 0.00 3.41
4679 5461 3.455910 CCTATGGAGATCTGTTGGGTTCA 59.544 47.826 0.00 0.00 0.00 3.18
4742 5524 1.401539 GCAAACAGAATCCAACCGAGC 60.402 52.381 0.00 0.00 0.00 5.03
4853 5635 1.580994 GCCATACCCCCAACTTCCCT 61.581 60.000 0.00 0.00 0.00 4.20
5138 5920 7.493743 AGCAAGCTTATTGATTGATCTACTG 57.506 36.000 0.00 0.00 44.11 2.74
5140 5922 7.226325 AGCAAGCTTATTGATTGATCTACTGTC 59.774 37.037 0.00 0.00 44.11 3.51
5338 6120 9.569167 CATGTCTTGAATATCATATGATTTGCC 57.431 33.333 22.84 11.37 36.05 4.52
5568 6350 6.646267 TCCGCCTACAACTATTGACTATTTT 58.354 36.000 0.00 0.00 0.00 1.82
5612 6394 5.687166 TTGGTGGAAGGACTTATTACGAT 57.313 39.130 0.00 0.00 0.00 3.73
5710 6492 6.722328 AGGGGGAAAGTACTGATTTTCTTAG 58.278 40.000 0.00 0.00 33.11 2.18
5714 6496 9.682465 GGGGAAAGTACTGATTTTCTTAGTATT 57.318 33.333 0.00 0.00 33.11 1.89
5842 6626 8.079203 CACAACCAGCAATATGTTTTTACACTA 58.921 33.333 0.00 0.00 0.00 2.74
6086 6870 9.151471 GACAATACTACTCTTAGTTGCATGAAA 57.849 33.333 0.00 0.00 39.43 2.69
6217 7001 9.113838 ACTCATAAATGTGCTAATGTAGGAAAG 57.886 33.333 0.00 0.00 0.00 2.62
6224 7008 9.851686 AATGTGCTAATGTAGGAAAGATGATAA 57.148 29.630 0.00 0.00 0.00 1.75
6226 7010 8.704668 TGTGCTAATGTAGGAAAGATGATAAGA 58.295 33.333 0.00 0.00 0.00 2.10
6234 7018 6.059787 AGGAAAGATGATAAGAGTTGCAGT 57.940 37.500 0.00 0.00 0.00 4.40
6235 7019 6.479884 AGGAAAGATGATAAGAGTTGCAGTT 58.520 36.000 0.00 0.00 0.00 3.16
6236 7020 7.624549 AGGAAAGATGATAAGAGTTGCAGTTA 58.375 34.615 0.00 0.00 0.00 2.24
6237 7021 8.103305 AGGAAAGATGATAAGAGTTGCAGTTAA 58.897 33.333 0.00 0.00 0.00 2.01
6238 7022 8.897752 GGAAAGATGATAAGAGTTGCAGTTAAT 58.102 33.333 0.00 0.00 0.00 1.40
6239 7023 9.713740 GAAAGATGATAAGAGTTGCAGTTAATG 57.286 33.333 0.00 0.00 0.00 1.90
6240 7024 9.453572 AAAGATGATAAGAGTTGCAGTTAATGA 57.546 29.630 0.00 0.00 0.00 2.57
6241 7025 9.624373 AAGATGATAAGAGTTGCAGTTAATGAT 57.376 29.630 0.00 0.00 0.00 2.45
6242 7026 9.624373 AGATGATAAGAGTTGCAGTTAATGATT 57.376 29.630 0.00 0.00 0.00 2.57
6245 7029 8.461222 TGATAAGAGTTGCAGTTAATGATTTGG 58.539 33.333 0.00 0.00 0.00 3.28
6246 7030 6.655078 AAGAGTTGCAGTTAATGATTTGGT 57.345 33.333 0.00 0.00 0.00 3.67
6248 7032 7.054491 AGAGTTGCAGTTAATGATTTGGTTT 57.946 32.000 0.00 0.00 0.00 3.27
6249 7033 7.147976 AGAGTTGCAGTTAATGATTTGGTTTC 58.852 34.615 0.00 0.00 0.00 2.78
6250 7034 6.815089 AGTTGCAGTTAATGATTTGGTTTCA 58.185 32.000 0.00 0.00 0.00 2.69
6331 7222 9.910267 CCATATGGTCCTATCATAATGATTTGA 57.090 33.333 14.09 0.00 38.26 2.69
6505 7399 3.624777 GAGATGGATTTTTGGCTCCTGA 58.375 45.455 0.00 0.00 32.47 3.86
6968 7868 3.851458 AAGAGGGAAACGGTACTTGTT 57.149 42.857 0.00 0.00 0.00 2.83
6969 7869 4.961438 AAGAGGGAAACGGTACTTGTTA 57.039 40.909 4.80 0.00 0.00 2.41
6970 7870 4.263018 AGAGGGAAACGGTACTTGTTAC 57.737 45.455 4.80 2.51 0.00 2.50
6971 7871 3.899980 AGAGGGAAACGGTACTTGTTACT 59.100 43.478 4.80 4.55 0.00 2.24
6972 7872 4.021632 AGAGGGAAACGGTACTTGTTACTC 60.022 45.833 14.97 14.97 0.00 2.59
6973 7873 3.007290 AGGGAAACGGTACTTGTTACTCC 59.993 47.826 10.99 10.99 0.00 3.85
6974 7874 3.329386 GGAAACGGTACTTGTTACTCCC 58.671 50.000 4.80 2.30 0.00 4.30
6975 7875 3.007290 GGAAACGGTACTTGTTACTCCCT 59.993 47.826 4.80 0.00 0.00 4.20
6976 7876 3.949842 AACGGTACTTGTTACTCCCTC 57.050 47.619 2.78 0.00 0.00 4.30
6977 7877 2.174360 ACGGTACTTGTTACTCCCTCC 58.826 52.381 0.00 0.00 0.00 4.30
6978 7878 1.133790 CGGTACTTGTTACTCCCTCCG 59.866 57.143 0.00 0.00 0.00 4.63
6979 7879 2.174360 GGTACTTGTTACTCCCTCCGT 58.826 52.381 0.00 0.00 0.00 4.69
6980 7880 2.165234 GGTACTTGTTACTCCCTCCGTC 59.835 54.545 0.00 0.00 0.00 4.79
6981 7881 1.264295 ACTTGTTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
6982 7882 0.172803 CTTGTTACTCCCTCCGTCCG 59.827 60.000 0.00 0.00 0.00 4.79
6983 7883 0.251297 TTGTTACTCCCTCCGTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
6984 7884 0.251297 TGTTACTCCCTCCGTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
6985 7885 0.890683 GTTACTCCCTCCGTCCGAAA 59.109 55.000 0.00 0.00 0.00 3.46
6986 7886 1.273327 GTTACTCCCTCCGTCCGAAAA 59.727 52.381 0.00 0.00 0.00 2.29
6987 7887 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
6988 7888 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
6989 7889 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
6990 7890 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
6991 7891 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
6992 7892 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
6993 7893 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
6994 7894 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
6995 7895 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
6996 7896 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
6997 7897 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
6998 7898 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
6999 7899 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
7000 7900 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
7001 7901 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
7002 7902 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
7003 7903 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
7004 7904 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
7005 7905 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
7006 7906 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
7014 7914 8.096414 ACTTGTCATCAAAATGGATAAAAAGGG 58.904 33.333 0.00 0.00 33.42 3.95
7015 7915 7.789202 TGTCATCAAAATGGATAAAAAGGGA 57.211 32.000 0.00 0.00 33.42 4.20
7016 7916 8.378115 TGTCATCAAAATGGATAAAAAGGGAT 57.622 30.769 0.00 0.00 33.42 3.85
7017 7917 8.259411 TGTCATCAAAATGGATAAAAAGGGATG 58.741 33.333 0.00 0.00 33.42 3.51
7018 7918 8.260114 GTCATCAAAATGGATAAAAAGGGATGT 58.740 33.333 0.00 0.00 33.42 3.06
7019 7919 9.486123 TCATCAAAATGGATAAAAAGGGATGTA 57.514 29.630 0.00 0.00 33.42 2.29
7022 7922 9.713684 TCAAAATGGATAAAAAGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
7028 7928 9.225682 TGGATAAAAAGGGATGTATCTAGAACT 57.774 33.333 0.00 0.00 0.00 3.01
7037 7937 9.364653 AGGGATGTATCTAGAACTAAAATACGT 57.635 33.333 0.00 0.00 0.00 3.57
7038 7938 9.623350 GGGATGTATCTAGAACTAAAATACGTC 57.377 37.037 17.13 17.13 37.78 4.34
7050 7950 9.623350 GAACTAAAATACGTCTAGATACATCCC 57.377 37.037 0.00 0.00 0.00 3.85
7051 7951 8.120140 ACTAAAATACGTCTAGATACATCCCC 57.880 38.462 0.00 0.00 0.00 4.81
7052 7952 7.949006 ACTAAAATACGTCTAGATACATCCCCT 59.051 37.037 0.00 0.00 0.00 4.79
7053 7953 7.613551 AAAATACGTCTAGATACATCCCCTT 57.386 36.000 0.00 0.00 0.00 3.95
7054 7954 7.613551 AAATACGTCTAGATACATCCCCTTT 57.386 36.000 0.00 0.00 0.00 3.11
7055 7955 7.613551 AATACGTCTAGATACATCCCCTTTT 57.386 36.000 0.00 0.00 0.00 2.27
7056 7956 5.277857 ACGTCTAGATACATCCCCTTTTG 57.722 43.478 0.00 0.00 0.00 2.44
7057 7957 4.715297 ACGTCTAGATACATCCCCTTTTGT 59.285 41.667 0.00 0.00 0.00 2.83
7058 7958 5.163437 ACGTCTAGATACATCCCCTTTTGTC 60.163 44.000 0.00 0.00 0.00 3.18
7059 7959 5.612351 GTCTAGATACATCCCCTTTTGTCC 58.388 45.833 0.00 0.00 0.00 4.02
7060 7960 5.130477 GTCTAGATACATCCCCTTTTGTCCA 59.870 44.000 0.00 0.00 0.00 4.02
7061 7961 5.911178 TCTAGATACATCCCCTTTTGTCCAT 59.089 40.000 0.00 0.00 0.00 3.41
7062 7962 5.472301 AGATACATCCCCTTTTGTCCATT 57.528 39.130 0.00 0.00 0.00 3.16
7063 7963 5.842339 AGATACATCCCCTTTTGTCCATTT 58.158 37.500 0.00 0.00 0.00 2.32
7064 7964 5.893824 AGATACATCCCCTTTTGTCCATTTC 59.106 40.000 0.00 0.00 0.00 2.17
7065 7965 2.825532 ACATCCCCTTTTGTCCATTTCG 59.174 45.455 0.00 0.00 0.00 3.46
7066 7966 2.961531 TCCCCTTTTGTCCATTTCGA 57.038 45.000 0.00 0.00 0.00 3.71
7067 7967 3.449746 TCCCCTTTTGTCCATTTCGAT 57.550 42.857 0.00 0.00 0.00 3.59
7068 7968 3.088532 TCCCCTTTTGTCCATTTCGATG 58.911 45.455 0.00 0.00 0.00 3.84
7069 7969 3.088532 CCCCTTTTGTCCATTTCGATGA 58.911 45.455 0.00 0.00 0.00 2.92
7070 7970 3.119495 CCCCTTTTGTCCATTTCGATGAC 60.119 47.826 0.00 0.00 0.00 3.06
7071 7971 3.505680 CCCTTTTGTCCATTTCGATGACA 59.494 43.478 4.18 4.18 0.00 3.58
7072 7972 4.022416 CCCTTTTGTCCATTTCGATGACAA 60.022 41.667 13.14 13.14 34.47 3.18
7073 7973 5.156355 CCTTTTGTCCATTTCGATGACAAG 58.844 41.667 15.31 8.75 37.13 3.16
7074 7974 5.278463 CCTTTTGTCCATTTCGATGACAAGT 60.278 40.000 15.31 0.00 37.13 3.16
7075 7975 6.072728 CCTTTTGTCCATTTCGATGACAAGTA 60.073 38.462 15.31 9.99 37.13 2.24
7076 7976 7.362056 CCTTTTGTCCATTTCGATGACAAGTAT 60.362 37.037 15.31 0.00 37.13 2.12
7077 7977 7.447374 TTTGTCCATTTCGATGACAAGTATT 57.553 32.000 15.31 0.00 37.13 1.89
7078 7978 7.447374 TTGTCCATTTCGATGACAAGTATTT 57.553 32.000 13.14 0.00 32.78 1.40
7079 7979 7.072177 TGTCCATTTCGATGACAAGTATTTC 57.928 36.000 5.46 0.00 0.00 2.17
7080 7980 6.093495 TGTCCATTTCGATGACAAGTATTTCC 59.907 38.462 5.46 0.00 0.00 3.13
7081 7981 5.293324 TCCATTTCGATGACAAGTATTTCCG 59.707 40.000 0.00 0.00 0.00 4.30
7082 7982 5.501715 CATTTCGATGACAAGTATTTCCGG 58.498 41.667 0.00 0.00 0.00 5.14
7083 7983 4.459390 TTCGATGACAAGTATTTCCGGA 57.541 40.909 0.00 0.00 0.00 5.14
7084 7984 3.777478 TCGATGACAAGTATTTCCGGAC 58.223 45.455 1.83 0.00 0.00 4.79
7085 7985 2.534349 CGATGACAAGTATTTCCGGACG 59.466 50.000 1.83 0.00 0.00 4.79
7086 7986 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
7087 7987 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
7088 7988 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
7089 7989 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
7090 7990 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
7091 7991 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
7092 7992 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
7242 8142 1.584380 GAGCCCAGAAAGCACAGCAG 61.584 60.000 0.00 0.00 0.00 4.24
7804 8712 0.599558 TTCCTGTGAGCAATTGCAGC 59.400 50.000 30.89 21.95 45.16 5.25
7891 8801 0.250793 ATGTATTTGGCGTCGGACCA 59.749 50.000 1.91 0.00 34.65 4.02
7940 8851 1.197721 GAGAATGTGAGGTTTGTGGCG 59.802 52.381 0.00 0.00 0.00 5.69
7992 8909 2.828520 CTGGAGAGAGCTGAAGTTACCA 59.171 50.000 0.00 0.00 0.00 3.25
8002 9479 9.982651 GAGAGCTGAAGTTACCAATACATATAA 57.017 33.333 0.00 0.00 0.00 0.98
8050 9534 6.509418 TTCAAACTGTATAACAATCCCAGC 57.491 37.500 0.00 0.00 0.00 4.85
8058 9542 4.965200 ATAACAATCCCAGCTAGGTCTC 57.035 45.455 0.00 0.00 34.66 3.36
8072 9556 0.741221 GGTCTCCGTTCATGGCTCAC 60.741 60.000 0.00 0.00 0.00 3.51
8092 9576 3.369147 CACTATTGCCGAGTGTGAAGAAG 59.631 47.826 2.43 0.00 39.61 2.85
8098 9582 3.057736 TGCCGAGTGTGAAGAAGTACTAC 60.058 47.826 0.00 0.00 0.00 2.73
8105 9602 7.090953 AGTGTGAAGAAGTACTACATCTAGC 57.909 40.000 0.00 0.00 0.00 3.42
8106 9603 6.659668 AGTGTGAAGAAGTACTACATCTAGCA 59.340 38.462 0.00 0.00 0.00 3.49
8113 9610 6.607600 AGAAGTACTACATCTAGCAACATCCA 59.392 38.462 0.00 0.00 0.00 3.41
8120 9617 5.503927 ACATCTAGCAACATCCATTTGAGT 58.496 37.500 0.00 0.00 0.00 3.41
8136 9634 7.234371 TCCATTTGAGTGACATTTATTTTGGGA 59.766 33.333 0.00 0.00 0.00 4.37
8140 9638 4.658063 AGTGACATTTATTTTGGGACGGA 58.342 39.130 0.00 0.00 0.00 4.69
8141 9639 4.700213 AGTGACATTTATTTTGGGACGGAG 59.300 41.667 0.00 0.00 0.00 4.63
8142 9640 4.013728 TGACATTTATTTTGGGACGGAGG 58.986 43.478 0.00 0.00 0.00 4.30
8143 9641 3.361786 ACATTTATTTTGGGACGGAGGG 58.638 45.455 0.00 0.00 0.00 4.30
8144 9642 3.010808 ACATTTATTTTGGGACGGAGGGA 59.989 43.478 0.00 0.00 0.00 4.20
8145 9643 3.810721 TTTATTTTGGGACGGAGGGAA 57.189 42.857 0.00 0.00 0.00 3.97
8195 9693 8.507249 GGAATAATGTTGTATACAATCCTGCTC 58.493 37.037 20.72 13.21 40.89 4.26
8198 9696 5.420725 TGTTGTATACAATCCTGCTCTGT 57.579 39.130 20.72 0.00 38.24 3.41
8224 9723 3.074094 AGTCATGGGCTGATCATGCTAAT 59.926 43.478 14.20 7.68 41.11 1.73
8261 9760 1.070577 GCAAGTACAGTGAAGTGTGCG 60.071 52.381 0.00 0.00 38.03 5.34
8278 9777 3.818210 TGTGCGTTGGTTAAGTGATTGAT 59.182 39.130 0.00 0.00 0.00 2.57
8301 9800 3.261580 GCTTTTGCAAGTGAAAGGTGTT 58.738 40.909 9.93 0.00 46.58 3.32
8311 9810 4.244862 AGTGAAAGGTGTTTTGCAAGTTG 58.755 39.130 0.00 0.00 0.00 3.16
8341 9864 8.344831 GTTTAGTTCATTTGTTACGGTTACCTT 58.655 33.333 0.00 0.00 0.00 3.50
8357 9880 6.092944 CGGTTACCTTTATGTTAAGCACATCA 59.907 38.462 0.00 0.00 43.17 3.07
8566 10448 7.510549 TCTTACAATAAACTCTTGCTTTGCT 57.489 32.000 0.00 0.00 0.00 3.91
8594 10476 0.944386 GCACCGCTTGAAAGAGTTGA 59.056 50.000 0.00 0.00 0.00 3.18
8598 10480 3.065371 CACCGCTTGAAAGAGTTGAAACT 59.935 43.478 0.00 0.00 43.16 2.66
8685 10572 8.570096 ACTTTAAAAGTTTTCATAGAAACGGC 57.430 30.769 3.60 0.00 42.78 5.68
8691 10578 6.385649 AGTTTTCATAGAAACGGCTTTTGA 57.614 33.333 0.00 0.00 42.78 2.69
8737 10624 5.122707 ACCTACACATGATCTCTCAGAGA 57.877 43.478 6.90 6.90 43.20 3.10
8748 10635 4.652421 TCTCTCAGAGATTCATGAGTGC 57.348 45.455 0.00 0.00 42.86 4.40
8754 14685 3.490155 CAGAGATTCATGAGTGCGATGTC 59.510 47.826 0.00 0.00 0.00 3.06
8759 14690 1.227089 ATGAGTGCGATGTCGAGCC 60.227 57.895 6.60 0.00 43.02 4.70
8773 14704 4.468769 AGCCGGGGTATCGTGGGA 62.469 66.667 2.18 0.00 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 7.707893 GCACAAGACAATAGAAAAATATGCCAT 59.292 33.333 0.00 0.00 0.00 4.40
12 13 7.035004 GCACAAGACAATAGAAAAATATGCCA 58.965 34.615 0.00 0.00 0.00 4.92
13 14 6.476706 GGCACAAGACAATAGAAAAATATGCC 59.523 38.462 0.00 0.00 39.55 4.40
14 15 7.035004 TGGCACAAGACAATAGAAAAATATGC 58.965 34.615 0.00 0.00 31.92 3.14
31 32 4.864969 TGGTTATTCCCGTTTGGCACAAG 61.865 47.826 0.00 0.00 38.63 3.16
32 33 3.015077 TGGTTATTCCCGTTTGGCACAA 61.015 45.455 0.00 0.00 38.63 3.33
33 34 1.249407 GGTTATTCCCGTTTGGCACA 58.751 50.000 0.00 0.00 0.00 4.57
169 205 1.271102 GGGAGAGATAAGCGCTACAGG 59.729 57.143 12.05 0.00 0.00 4.00
197 233 1.999002 GGTTCGAGGGGAATGGGGA 60.999 63.158 0.00 0.00 36.92 4.81
315 351 0.901124 TGAGGAAGAGAAGGAGCAGC 59.099 55.000 0.00 0.00 0.00 5.25
365 401 2.416747 GAGCACAAAGAAAATTGGGGC 58.583 47.619 0.00 0.00 34.21 5.80
436 472 3.575805 GGAGACATGAGAGAAGGAGGAT 58.424 50.000 0.00 0.00 0.00 3.24
609 647 3.023949 GCAGGCGGACATGGAGACT 62.024 63.158 0.00 0.00 0.00 3.24
651 691 2.286523 ACAGGGAGAGCAGGGAACG 61.287 63.158 0.00 0.00 0.00 3.95
667 707 0.948623 GACACCAGCGCACATACACA 60.949 55.000 11.47 0.00 0.00 3.72
669 709 1.375396 GGACACCAGCGCACATACA 60.375 57.895 11.47 0.00 0.00 2.29
675 715 3.932580 GATCGTGGACACCAGCGCA 62.933 63.158 11.47 0.00 32.34 6.09
718 758 1.066858 ACACGAACTGCTATGACAGGG 60.067 52.381 0.00 0.00 42.21 4.45
745 785 5.395486 GTGCTGTTACGAACTGTGAAAAATC 59.605 40.000 0.00 0.00 33.43 2.17
804 845 7.377766 AGGTGTACATATAAAACACTGCAAG 57.622 36.000 0.00 0.00 42.46 4.01
938 1675 8.732746 TTTGAGAGAATAGCTAAAATACCACC 57.267 34.615 0.00 0.00 0.00 4.61
1154 1891 2.354821 GACGACTTTTCAGGTTTGCTGT 59.645 45.455 0.00 0.00 0.00 4.40
1934 2674 9.838975 CAACAGAAAATGTGCATGTAATAACTA 57.161 29.630 0.00 0.00 43.00 2.24
1935 2675 8.359642 ACAACAGAAAATGTGCATGTAATAACT 58.640 29.630 0.00 0.00 43.00 2.24
1936 2676 8.519492 ACAACAGAAAATGTGCATGTAATAAC 57.481 30.769 0.00 0.00 43.00 1.89
2700 3454 6.146898 ACATGCGTTATAAAACAAACCTCAC 58.853 36.000 0.00 0.00 35.16 3.51
2732 3486 0.880278 ACGCCAATAGCCAGTATGCG 60.880 55.000 0.00 0.00 38.73 4.73
2749 3503 2.394708 CCGGCATATACAGAACAGACG 58.605 52.381 0.00 0.00 0.00 4.18
2779 3533 6.315891 CAGAACAAGAAAGAGGATCCTGAATC 59.684 42.308 22.02 13.67 33.66 2.52
2857 3611 6.284459 AGTACATGCCTAATCTAGAAAGCAC 58.716 40.000 10.40 2.20 32.26 4.40
2860 3614 8.085296 CACCTAGTACATGCCTAATCTAGAAAG 58.915 40.741 0.00 0.00 0.00 2.62
2961 3715 9.758651 AAACCTTGTTGGACTATAATTGAAAAC 57.241 29.630 0.00 0.00 39.71 2.43
3118 3883 1.078848 GGGCCTGTGTAGTCAGCTG 60.079 63.158 7.63 7.63 34.47 4.24
3142 3907 5.689819 AGTTACTCATTAAGCAAAGCAACG 58.310 37.500 0.00 0.00 0.00 4.10
3203 3968 4.102367 AGCATCCCTGGAGATAGAGAAAAC 59.898 45.833 0.00 0.00 0.00 2.43
3415 4187 4.708421 ACAATAACTGGAGAATGCTGCATT 59.292 37.500 26.54 26.54 41.87 3.56
3448 4220 7.482169 TCAACTACAAGAATCAGGACATAGT 57.518 36.000 0.00 0.00 0.00 2.12
3452 4224 9.739276 AAATAATCAACTACAAGAATCAGGACA 57.261 29.630 0.00 0.00 0.00 4.02
3491 4268 5.559148 AGAGAGGACCTAAGGCAATTATG 57.441 43.478 0.00 0.00 0.00 1.90
3493 4270 5.030147 TGAAGAGAGGACCTAAGGCAATTA 58.970 41.667 0.00 0.00 0.00 1.40
3769 4547 4.518278 AATACCAATCACATGCCAGGTA 57.482 40.909 0.00 0.00 36.20 3.08
3853 4631 9.878599 CCCGATTACAATTAAAGATATGTTCAC 57.121 33.333 0.00 0.00 0.00 3.18
3940 4718 6.723282 CCAGCTAAACATTCAGAATCTTAGC 58.277 40.000 24.39 24.39 38.46 3.09
4235 5015 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
4236 5016 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4237 5017 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
4238 5018 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
4239 5019 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
4240 5020 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
4241 5021 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
4242 5022 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
4243 5023 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
4244 5024 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
4250 5030 9.880157 AAAGTTAGTACAAAGTTGAGACACTTA 57.120 29.630 0.00 0.00 35.87 2.24
4251 5031 8.788325 AAAGTTAGTACAAAGTTGAGACACTT 57.212 30.769 0.00 0.98 38.74 3.16
4252 5032 9.530633 CTAAAGTTAGTACAAAGTTGAGACACT 57.469 33.333 0.00 0.00 0.00 3.55
4253 5033 9.310716 ACTAAAGTTAGTACAAAGTTGAGACAC 57.689 33.333 1.81 0.00 41.92 3.67
4290 5070 9.816787 TCCCAAAATAAGTGTCTTAACCTTATT 57.183 29.630 0.00 0.00 38.77 1.40
4291 5071 9.239551 GTCCCAAAATAAGTGTCTTAACCTTAT 57.760 33.333 0.00 0.00 33.74 1.73
4292 5072 7.388500 CGTCCCAAAATAAGTGTCTTAACCTTA 59.612 37.037 0.00 0.00 0.00 2.69
4293 5073 6.206048 CGTCCCAAAATAAGTGTCTTAACCTT 59.794 38.462 0.00 0.00 0.00 3.50
4294 5074 5.704053 CGTCCCAAAATAAGTGTCTTAACCT 59.296 40.000 0.00 0.00 0.00 3.50
4295 5075 5.106436 CCGTCCCAAAATAAGTGTCTTAACC 60.106 44.000 0.00 0.00 0.00 2.85
4296 5076 5.702209 TCCGTCCCAAAATAAGTGTCTTAAC 59.298 40.000 0.00 0.00 0.00 2.01
4297 5077 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
4298 5078 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
4299 5079 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
4300 5080 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4301 5081 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4302 5082 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
4303 5083 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4304 5084 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4305 5085 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
4306 5086 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4307 5087 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4308 5088 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
4309 5089 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
4310 5090 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
4311 5091 0.337082 TCATACTCCCTCCGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12
4312 5092 0.561184 ATCATACTCCCTCCGTCCCA 59.439 55.000 0.00 0.00 0.00 4.37
4313 5093 2.599408 TATCATACTCCCTCCGTCCC 57.401 55.000 0.00 0.00 0.00 4.46
4314 5094 3.952967 GGTATATCATACTCCCTCCGTCC 59.047 52.174 0.00 0.00 0.00 4.79
4315 5095 4.641094 CAGGTATATCATACTCCCTCCGTC 59.359 50.000 0.00 0.00 0.00 4.79
4316 5096 4.044317 ACAGGTATATCATACTCCCTCCGT 59.956 45.833 0.00 0.00 0.00 4.69
4317 5097 4.601084 ACAGGTATATCATACTCCCTCCG 58.399 47.826 0.00 0.00 0.00 4.63
4318 5098 7.126733 ACATACAGGTATATCATACTCCCTCC 58.873 42.308 0.00 0.00 0.00 4.30
4319 5099 9.344772 CTACATACAGGTATATCATACTCCCTC 57.655 40.741 0.00 0.00 0.00 4.30
4320 5100 9.070210 TCTACATACAGGTATATCATACTCCCT 57.930 37.037 0.00 0.00 0.00 4.20
4321 5101 9.869667 ATCTACATACAGGTATATCATACTCCC 57.130 37.037 0.00 0.00 0.00 4.30
4399 5179 7.244886 TCATTATTCTCAACAGAAGGTGAGA 57.755 36.000 9.03 9.03 42.13 3.27
4573 5355 4.477536 TGGGAACTAGAGCTCCATAGAT 57.522 45.455 10.93 1.00 32.04 1.98
4679 5461 5.180271 CAAAGGGCAATGCATTGAACTTAT 58.820 37.500 37.36 24.20 40.14 1.73
4742 5524 9.547753 AATAGTAATCAACCTAAGCATGTACTG 57.452 33.333 0.00 0.00 0.00 2.74
4789 5571 6.096141 TGTCTGCCAGAAGTTTATTTTGTGAA 59.904 34.615 0.00 0.00 0.00 3.18
5138 5920 6.273071 ACAAATAACAAGGCAAAACAGAGAC 58.727 36.000 0.00 0.00 0.00 3.36
5140 5922 6.272318 TGACAAATAACAAGGCAAAACAGAG 58.728 36.000 0.00 0.00 0.00 3.35
5568 6350 6.754209 CCAAACTTAAAATGTGTGTTGTAGCA 59.246 34.615 0.00 0.00 0.00 3.49
5612 6394 4.420522 AGCAGGCCAAAATCAAGAAAAA 57.579 36.364 5.01 0.00 0.00 1.94
6224 7008 6.655078 AACCAAATCATTAACTGCAACTCT 57.345 33.333 0.00 0.00 0.00 3.24
6226 7010 6.815089 TGAAACCAAATCATTAACTGCAACT 58.185 32.000 0.00 0.00 0.00 3.16
6234 7018 6.042552 ACCACCACATGAAACCAAATCATTAA 59.957 34.615 0.00 0.00 35.38 1.40
6235 7019 5.541868 ACCACCACATGAAACCAAATCATTA 59.458 36.000 0.00 0.00 35.38 1.90
6236 7020 4.347583 ACCACCACATGAAACCAAATCATT 59.652 37.500 0.00 0.00 35.38 2.57
6237 7021 3.903090 ACCACCACATGAAACCAAATCAT 59.097 39.130 0.00 0.00 38.02 2.45
6238 7022 3.069300 CACCACCACATGAAACCAAATCA 59.931 43.478 0.00 0.00 0.00 2.57
6239 7023 3.069443 ACACCACCACATGAAACCAAATC 59.931 43.478 0.00 0.00 0.00 2.17
6240 7024 3.037549 ACACCACCACATGAAACCAAAT 58.962 40.909 0.00 0.00 0.00 2.32
6241 7025 2.167281 CACACCACCACATGAAACCAAA 59.833 45.455 0.00 0.00 0.00 3.28
6242 7026 1.753649 CACACCACCACATGAAACCAA 59.246 47.619 0.00 0.00 0.00 3.67
6244 7028 0.673437 CCACACCACCACATGAAACC 59.327 55.000 0.00 0.00 0.00 3.27
6245 7029 1.066908 CACCACACCACCACATGAAAC 59.933 52.381 0.00 0.00 0.00 2.78
6246 7030 1.397672 CACCACACCACCACATGAAA 58.602 50.000 0.00 0.00 0.00 2.69
6248 7032 1.150308 CCACCACACCACCACATGA 59.850 57.895 0.00 0.00 0.00 3.07
6249 7033 2.563798 GCCACCACACCACCACATG 61.564 63.158 0.00 0.00 0.00 3.21
6250 7034 2.203480 GCCACCACACCACCACAT 60.203 61.111 0.00 0.00 0.00 3.21
6331 7222 3.014623 GGTAGGAAGGTTAAGCGCAAAT 58.985 45.455 11.47 0.00 0.00 2.32
6505 7399 4.202419 TGTTTATCAGGGTGTGTAAGTGCT 60.202 41.667 0.00 0.00 0.00 4.40
6580 7475 2.624838 CCTTCAGCCATGTTTGTTGTCT 59.375 45.455 0.00 0.00 0.00 3.41
6713 7609 2.223479 CCGCCATGAAAGGTAAAATCCG 60.223 50.000 0.00 0.00 0.00 4.18
6968 7868 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
6969 7869 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
6970 7870 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
6971 7871 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
6972 7872 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
6973 7873 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
6974 7874 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
6975 7875 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
6976 7876 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
6977 7877 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
6978 7878 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
6979 7879 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
6980 7880 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
6981 7881 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
6988 7888 8.096414 CCCTTTTTATCCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
6989 7889 8.313292 TCCCTTTTTATCCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
6990 7890 8.200024 TCCCTTTTTATCCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
6991 7891 7.789202 TCCCTTTTTATCCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
6992 7892 8.260114 ACATCCCTTTTTATCCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
6993 7893 8.378115 ACATCCCTTTTTATCCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
6996 7896 9.713684 AGATACATCCCTTTTTATCCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
7002 7902 9.225682 AGTTCTAGATACATCCCTTTTTATCCA 57.774 33.333 0.00 0.00 0.00 3.41
7011 7911 9.364653 ACGTATTTTAGTTCTAGATACATCCCT 57.635 33.333 0.00 0.00 0.00 4.20
7012 7912 9.623350 GACGTATTTTAGTTCTAGATACATCCC 57.377 37.037 0.00 0.00 0.00 3.85
7024 7924 9.623350 GGGATGTATCTAGACGTATTTTAGTTC 57.377 37.037 0.00 0.00 0.00 3.01
7025 7925 8.583296 GGGGATGTATCTAGACGTATTTTAGTT 58.417 37.037 0.00 0.00 0.00 2.24
7026 7926 7.949006 AGGGGATGTATCTAGACGTATTTTAGT 59.051 37.037 0.00 0.00 0.00 2.24
7027 7927 8.350852 AGGGGATGTATCTAGACGTATTTTAG 57.649 38.462 0.00 0.00 0.00 1.85
7028 7928 8.716674 AAGGGGATGTATCTAGACGTATTTTA 57.283 34.615 0.00 0.00 0.00 1.52
7029 7929 7.613551 AAGGGGATGTATCTAGACGTATTTT 57.386 36.000 0.00 0.00 0.00 1.82
7030 7930 7.613551 AAAGGGGATGTATCTAGACGTATTT 57.386 36.000 0.00 0.00 0.00 1.40
7031 7931 7.070821 ACAAAAGGGGATGTATCTAGACGTATT 59.929 37.037 0.00 0.00 0.00 1.89
7032 7932 6.553852 ACAAAAGGGGATGTATCTAGACGTAT 59.446 38.462 0.00 0.00 0.00 3.06
7033 7933 5.895534 ACAAAAGGGGATGTATCTAGACGTA 59.104 40.000 0.00 0.00 0.00 3.57
7034 7934 4.715297 ACAAAAGGGGATGTATCTAGACGT 59.285 41.667 0.00 0.00 0.00 4.34
7035 7935 5.277857 ACAAAAGGGGATGTATCTAGACG 57.722 43.478 0.00 0.00 0.00 4.18
7036 7936 5.130477 TGGACAAAAGGGGATGTATCTAGAC 59.870 44.000 0.00 0.00 0.00 2.59
7037 7937 5.285401 TGGACAAAAGGGGATGTATCTAGA 58.715 41.667 0.00 0.00 0.00 2.43
7038 7938 5.630415 TGGACAAAAGGGGATGTATCTAG 57.370 43.478 0.00 0.00 0.00 2.43
7039 7939 6.590656 AATGGACAAAAGGGGATGTATCTA 57.409 37.500 0.00 0.00 0.00 1.98
7040 7940 5.472301 AATGGACAAAAGGGGATGTATCT 57.528 39.130 0.00 0.00 0.00 1.98
7041 7941 5.221048 CGAAATGGACAAAAGGGGATGTATC 60.221 44.000 0.00 0.00 0.00 2.24
7042 7942 4.644685 CGAAATGGACAAAAGGGGATGTAT 59.355 41.667 0.00 0.00 0.00 2.29
7043 7943 4.013728 CGAAATGGACAAAAGGGGATGTA 58.986 43.478 0.00 0.00 0.00 2.29
7044 7944 2.825532 CGAAATGGACAAAAGGGGATGT 59.174 45.455 0.00 0.00 0.00 3.06
7045 7945 3.088532 TCGAAATGGACAAAAGGGGATG 58.911 45.455 0.00 0.00 0.00 3.51
7046 7946 3.449746 TCGAAATGGACAAAAGGGGAT 57.550 42.857 0.00 0.00 0.00 3.85
7047 7947 2.961531 TCGAAATGGACAAAAGGGGA 57.038 45.000 0.00 0.00 0.00 4.81
7048 7948 3.088532 TCATCGAAATGGACAAAAGGGG 58.911 45.455 0.00 0.00 33.42 4.79
7049 7949 3.505680 TGTCATCGAAATGGACAAAAGGG 59.494 43.478 9.28 0.00 33.42 3.95
7050 7950 4.764679 TGTCATCGAAATGGACAAAAGG 57.235 40.909 9.28 0.00 33.42 3.11
7051 7951 5.762045 ACTTGTCATCGAAATGGACAAAAG 58.238 37.500 19.07 13.81 34.98 2.27
7052 7952 5.766150 ACTTGTCATCGAAATGGACAAAA 57.234 34.783 19.07 5.83 34.98 2.44
7053 7953 7.447374 AATACTTGTCATCGAAATGGACAAA 57.553 32.000 19.07 10.75 34.98 2.83
7054 7954 7.361713 GGAAATACTTGTCATCGAAATGGACAA 60.362 37.037 18.13 18.13 34.59 3.18
7055 7955 6.093495 GGAAATACTTGTCATCGAAATGGACA 59.907 38.462 8.05 8.05 33.42 4.02
7056 7956 6.487103 GGAAATACTTGTCATCGAAATGGAC 58.513 40.000 0.00 0.00 33.42 4.02
7057 7957 5.293324 CGGAAATACTTGTCATCGAAATGGA 59.707 40.000 0.00 0.00 33.42 3.41
7058 7958 5.501715 CGGAAATACTTGTCATCGAAATGG 58.498 41.667 0.00 0.00 33.42 3.16
7059 7959 5.293324 TCCGGAAATACTTGTCATCGAAATG 59.707 40.000 0.00 0.00 0.00 2.32
7060 7960 5.293569 GTCCGGAAATACTTGTCATCGAAAT 59.706 40.000 5.23 0.00 0.00 2.17
7061 7961 4.628333 GTCCGGAAATACTTGTCATCGAAA 59.372 41.667 5.23 0.00 0.00 3.46
7062 7962 4.178540 GTCCGGAAATACTTGTCATCGAA 58.821 43.478 5.23 0.00 0.00 3.71
7063 7963 3.732774 CGTCCGGAAATACTTGTCATCGA 60.733 47.826 5.23 0.00 0.00 3.59
7064 7964 2.534349 CGTCCGGAAATACTTGTCATCG 59.466 50.000 5.23 0.00 0.00 3.84
7065 7965 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
7066 7966 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
7067 7967 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
7068 7968 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
7069 7969 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
7070 7970 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
7071 7971 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
7072 7972 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
7073 7973 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
7074 7974 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
7075 7975 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
7076 7976 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
7077 7977 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
7078 7978 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
7079 7979 1.455217 ATGTACTCCCTCCGTCCGG 60.455 63.158 0.00 0.00 0.00 5.14
7080 7980 1.035932 ACATGTACTCCCTCCGTCCG 61.036 60.000 0.00 0.00 0.00 4.79
7081 7981 1.192428 AACATGTACTCCCTCCGTCC 58.808 55.000 0.00 0.00 0.00 4.79
7082 7982 2.028385 ACAAACATGTACTCCCTCCGTC 60.028 50.000 0.00 0.00 0.00 4.79
7083 7983 1.975680 ACAAACATGTACTCCCTCCGT 59.024 47.619 0.00 0.00 0.00 4.69
7084 7984 2.762535 ACAAACATGTACTCCCTCCG 57.237 50.000 0.00 0.00 0.00 4.63
7085 7985 5.615925 AGATACAAACATGTACTCCCTCC 57.384 43.478 0.00 0.00 0.00 4.30
7242 8142 5.181748 ACAACAGAGGCAGAATCATACTTC 58.818 41.667 0.00 0.00 0.00 3.01
7294 8194 7.445096 TGGTCATATTTGCTGGTATAGAACATG 59.555 37.037 0.00 0.00 0.00 3.21
7352 8252 3.184178 CGCCAAAAACTGCTGGTATTTTG 59.816 43.478 16.99 16.99 40.62 2.44
7891 8801 1.556911 CTGTGCCCCTATCAACTCTGT 59.443 52.381 0.00 0.00 0.00 3.41
8002 9479 5.170748 CAACTCACAAGCAAAACCTTCTTT 58.829 37.500 0.00 0.00 0.00 2.52
8006 9483 4.535526 AACAACTCACAAGCAAAACCTT 57.464 36.364 0.00 0.00 0.00 3.50
8007 9484 4.021544 TGAAACAACTCACAAGCAAAACCT 60.022 37.500 0.00 0.00 0.00 3.50
8050 9534 1.067821 GAGCCATGAACGGAGACCTAG 59.932 57.143 0.00 0.00 0.00 3.02
8058 9542 1.331756 GCAATAGTGAGCCATGAACGG 59.668 52.381 0.00 0.00 0.00 4.44
8072 9556 3.589988 ACTTCTTCACACTCGGCAATAG 58.410 45.455 0.00 0.00 0.00 1.73
8092 9576 7.710907 TCAAATGGATGTTGCTAGATGTAGTAC 59.289 37.037 0.00 0.00 0.00 2.73
8098 9582 5.587443 TCACTCAAATGGATGTTGCTAGATG 59.413 40.000 0.00 0.00 0.00 2.90
8105 9602 8.991243 AATAAATGTCACTCAAATGGATGTTG 57.009 30.769 0.00 0.00 0.00 3.33
8113 9610 7.090173 CGTCCCAAAATAAATGTCACTCAAAT 58.910 34.615 0.00 0.00 0.00 2.32
8120 9617 4.013728 CCTCCGTCCCAAAATAAATGTCA 58.986 43.478 0.00 0.00 0.00 3.58
8136 9634 6.070424 TGACTCTAAAAACATATTCCCTCCGT 60.070 38.462 0.00 0.00 0.00 4.69
8140 9638 9.025041 CCTTTTGACTCTAAAAACATATTCCCT 57.975 33.333 0.00 0.00 0.00 4.20
8141 9639 9.020731 TCCTTTTGACTCTAAAAACATATTCCC 57.979 33.333 0.00 0.00 0.00 3.97
8145 9643 9.753674 TCCATCCTTTTGACTCTAAAAACATAT 57.246 29.630 0.00 0.00 0.00 1.78
8186 9684 4.511527 CATGACTGTAACAGAGCAGGATT 58.488 43.478 0.00 0.00 37.07 3.01
8195 9693 2.768253 TCAGCCCATGACTGTAACAG 57.232 50.000 13.38 0.00 36.50 3.16
8198 9696 3.812262 CATGATCAGCCCATGACTGTAA 58.188 45.455 13.38 3.97 42.89 2.41
8224 9723 9.803315 CTGTACTTGCAATAAGTTATCAGTAGA 57.197 33.333 0.00 0.00 0.00 2.59
8261 9760 7.062255 GCAAAAGCTATCAATCACTTAACCAAC 59.938 37.037 0.00 0.00 0.00 3.77
8278 9777 3.699038 ACACCTTTCACTTGCAAAAGCTA 59.301 39.130 0.00 0.00 32.34 3.32
8301 9800 4.081972 TGAACTAAACAGCCAACTTGCAAA 60.082 37.500 0.00 0.00 0.00 3.68
8311 9810 5.151389 CCGTAACAAATGAACTAAACAGCC 58.849 41.667 0.00 0.00 0.00 4.85
8543 10425 7.362662 TGAGCAAAGCAAGAGTTTATTGTAAG 58.637 34.615 0.00 0.00 0.00 2.34
8545 10427 6.875948 TGAGCAAAGCAAGAGTTTATTGTA 57.124 33.333 0.00 0.00 0.00 2.41
8566 10448 0.179059 TCAAGCGGTGCTTCTGTTGA 60.179 50.000 0.16 0.00 46.77 3.18
8683 10570 2.340337 GGCACATTGTCATCAAAAGCC 58.660 47.619 0.00 0.00 39.55 4.35
8684 10571 2.288948 TGGGCACATTGTCATCAAAAGC 60.289 45.455 0.00 0.00 37.11 3.51
8685 10572 3.663995 TGGGCACATTGTCATCAAAAG 57.336 42.857 0.00 0.00 37.11 2.27
8691 10578 5.743636 ACTTAATTTGGGCACATTGTCAT 57.256 34.783 0.00 0.00 0.00 3.06
8737 10624 2.467838 CTCGACATCGCACTCATGAAT 58.532 47.619 0.00 0.00 39.60 2.57
8739 10626 0.526310 GCTCGACATCGCACTCATGA 60.526 55.000 0.00 0.00 39.60 3.07
8740 10627 1.485838 GGCTCGACATCGCACTCATG 61.486 60.000 0.00 0.00 39.60 3.07
8748 10635 2.473664 GATACCCCGGCTCGACATCG 62.474 65.000 0.00 0.00 41.45 3.84
8754 14685 4.280494 CCACGATACCCCGGCTCG 62.280 72.222 0.00 4.05 38.34 5.03
8759 14690 0.251073 AAGTTTCCCACGATACCCCG 59.749 55.000 0.00 0.00 0.00 5.73
8763 14694 1.737793 CCAGCAAGTTTCCCACGATAC 59.262 52.381 0.00 0.00 0.00 2.24
8773 14704 2.960819 CTACGAGTAGCCAGCAAGTTT 58.039 47.619 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.