Multiple sequence alignment - TraesCS2A01G497300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G497300 chr2A 100.000 6805 0 0 1 6805 728080058 728073254 0.000000e+00 12567.0
1 TraesCS2A01G497300 chr2A 83.293 413 56 7 3198 3610 726763587 726763986 1.080000e-97 368.0
2 TraesCS2A01G497300 chr2A 86.604 321 34 5 2870 3185 726763231 726763547 5.050000e-91 346.0
3 TraesCS2A01G497300 chr2A 84.110 365 36 14 3919 4264 726764179 726764540 3.930000e-87 333.0
4 TraesCS2A01G497300 chr2A 76.257 716 108 30 4308 5014 726764626 726765288 2.370000e-84 324.0
5 TraesCS2A01G497300 chr2A 87.402 254 30 2 2024 2275 726762702 726762955 2.400000e-74 291.0
6 TraesCS2A01G497300 chr2A 80.982 326 49 8 5163 5476 726765425 726765749 5.270000e-61 246.0
7 TraesCS2A01G497300 chr2A 90.625 128 12 0 1799 1926 726762535 726762662 3.260000e-38 171.0
8 TraesCS2A01G497300 chr2A 90.566 106 8 2 2671 2775 704759653 704759549 9.200000e-29 139.0
9 TraesCS2A01G497300 chr2B 92.139 1959 120 20 3637 5566 719528565 719526612 0.000000e+00 2734.0
10 TraesCS2A01G497300 chr2B 91.082 1368 77 21 637 1969 719531968 719530611 0.000000e+00 1808.0
11 TraesCS2A01G497300 chr2B 94.419 663 31 5 2980 3638 719529319 719528659 0.000000e+00 1014.0
12 TraesCS2A01G497300 chr2B 84.724 1067 89 37 5675 6679 719526449 719525395 0.000000e+00 1000.0
13 TraesCS2A01G497300 chr2B 95.833 576 24 0 1966 2541 719530499 719529924 0.000000e+00 931.0
14 TraesCS2A01G497300 chr2B 84.490 735 93 12 2882 3610 717916283 717917002 0.000000e+00 706.0
15 TraesCS2A01G497300 chr2B 85.154 357 31 16 3924 4264 717917185 717917535 5.050000e-91 346.0
16 TraesCS2A01G497300 chr2B 95.735 211 5 2 2766 2975 719529683 719529476 3.040000e-88 337.0
17 TraesCS2A01G497300 chr2B 86.909 275 34 2 2002 2275 717915739 717916012 2.380000e-79 307.0
18 TraesCS2A01G497300 chr2B 91.975 162 13 0 4310 4471 717917617 717917778 1.910000e-55 228.0
19 TraesCS2A01G497300 chr2B 94.521 146 4 3 2543 2688 719529819 719529678 8.880000e-54 222.0
20 TraesCS2A01G497300 chr2B 90.840 131 12 0 1799 1929 717915596 717915726 7.010000e-40 176.0
21 TraesCS2A01G497300 chr2B 89.209 139 12 2 4877 5014 717924007 717924143 3.260000e-38 171.0
22 TraesCS2A01G497300 chr2B 93.878 98 5 1 2682 2779 772448335 772448239 5.500000e-31 147.0
23 TraesCS2A01G497300 chr2B 93.000 100 6 1 2674 2773 23730054 23730152 1.980000e-30 145.0
24 TraesCS2A01G497300 chr5A 99.051 632 6 0 1 632 398692389 398693020 0.000000e+00 1134.0
25 TraesCS2A01G497300 chr3A 98.292 644 9 2 1 643 32710313 32709671 0.000000e+00 1127.0
26 TraesCS2A01G497300 chr3A 93.878 98 5 1 2677 2774 686127443 686127539 5.500000e-31 147.0
27 TraesCS2A01G497300 chr7D 97.097 620 18 0 1 620 54602428 54603047 0.000000e+00 1046.0
28 TraesCS2A01G497300 chr7D 80.348 748 115 24 2882 3622 376092311 376091589 7.770000e-149 538.0
29 TraesCS2A01G497300 chr7D 79.422 588 92 24 3930 4504 376090172 376089601 8.280000e-104 388.0
30 TraesCS2A01G497300 chr7D 75.583 815 150 23 1481 2275 376093644 376092859 2.330000e-94 357.0
31 TraesCS2A01G497300 chr7D 78.507 335 55 15 4706 5036 376089362 376089041 3.220000e-48 204.0
32 TraesCS2A01G497300 chr7D 95.789 95 4 0 2682 2776 45835415 45835321 3.290000e-33 154.0
33 TraesCS2A01G497300 chr7A 80.240 749 115 24 2882 3622 422831860 422831137 3.610000e-147 532.0
34 TraesCS2A01G497300 chr7A 79.492 590 92 23 3930 4507 422830629 422830057 6.400000e-105 392.0
35 TraesCS2A01G497300 chr7A 75.706 815 152 21 1478 2275 422833181 422832396 3.880000e-97 366.0
36 TraesCS2A01G497300 chr7A 78.507 335 55 15 4706 5036 422829817 422829496 3.220000e-48 204.0
37 TraesCS2A01G497300 chr7A 81.890 127 18 4 2374 2499 422832261 422832139 1.210000e-17 102.0
38 TraesCS2A01G497300 chr7B 80.027 751 111 26 2882 3622 371039163 371038442 2.810000e-143 520.0
39 TraesCS2A01G497300 chr7B 79.664 595 85 27 3917 4491 371037945 371037367 4.950000e-106 396.0
40 TraesCS2A01G497300 chr7B 75.862 812 151 20 1478 2275 371040450 371039670 8.340000e-99 372.0
41 TraesCS2A01G497300 chr2D 84.834 422 48 6 3189 3610 592284227 592284632 1.770000e-110 411.0
42 TraesCS2A01G497300 chr2D 84.110 365 36 15 3919 4264 592284825 592285186 3.930000e-87 333.0
43 TraesCS2A01G497300 chr2D 81.525 341 43 13 4680 5014 592285618 592285944 5.230000e-66 263.0
44 TraesCS2A01G497300 chr2D 93.293 164 11 0 4308 4471 592285272 592285435 6.820000e-60 243.0
45 TraesCS2A01G497300 chr2D 80.864 324 49 7 5165 5476 592286083 592286405 6.820000e-60 243.0
46 TraesCS2A01G497300 chr2D 88.384 198 19 1 2992 3185 592283998 592284195 1.140000e-57 235.0
47 TraesCS2A01G497300 chr2D 93.617 94 6 0 2882 2975 592283837 592283930 2.560000e-29 141.0
48 TraesCS2A01G497300 chr2D 89.189 111 6 5 193 297 569399139 569399249 4.280000e-27 134.0
49 TraesCS2A01G497300 chr6A 97.727 88 2 0 2685 2772 213553556 213553469 1.180000e-32 152.0
50 TraesCS2A01G497300 chr3B 93.939 99 6 0 2683 2781 818896675 818896577 4.250000e-32 150.0
51 TraesCS2A01G497300 chr3D 92.929 99 6 1 2673 2771 147833396 147833299 7.110000e-30 143.0
52 TraesCS2A01G497300 chr3D 91.346 104 7 2 2674 2776 400749600 400749702 2.560000e-29 141.0
53 TraesCS2A01G497300 chr3D 76.978 278 38 20 6060 6317 614402324 614402053 1.190000e-27 135.0
54 TraesCS2A01G497300 chr4A 97.143 35 1 0 6712 6746 649384427 649384461 7.370000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G497300 chr2A 728073254 728080058 6804 True 12567.000000 12567 100.000000 1 6805 1 chr2A.!!$R2 6804
1 TraesCS2A01G497300 chr2A 726762535 726765749 3214 False 297.000000 368 84.181857 1799 5476 7 chr2A.!!$F1 3677
2 TraesCS2A01G497300 chr2B 719525395 719531968 6573 True 1149.428571 2734 92.636143 637 6679 7 chr2B.!!$R2 6042
3 TraesCS2A01G497300 chr2B 717915596 717917778 2182 False 352.600000 706 87.873600 1799 4471 5 chr2B.!!$F3 2672
4 TraesCS2A01G497300 chr5A 398692389 398693020 631 False 1134.000000 1134 99.051000 1 632 1 chr5A.!!$F1 631
5 TraesCS2A01G497300 chr3A 32709671 32710313 642 True 1127.000000 1127 98.292000 1 643 1 chr3A.!!$R1 642
6 TraesCS2A01G497300 chr7D 54602428 54603047 619 False 1046.000000 1046 97.097000 1 620 1 chr7D.!!$F1 619
7 TraesCS2A01G497300 chr7D 376089041 376093644 4603 True 371.750000 538 78.465000 1481 5036 4 chr7D.!!$R2 3555
8 TraesCS2A01G497300 chr7A 422829496 422833181 3685 True 319.200000 532 79.167000 1478 5036 5 chr7A.!!$R1 3558
9 TraesCS2A01G497300 chr7B 371037367 371040450 3083 True 429.333333 520 78.517667 1478 4491 3 chr7B.!!$R1 3013
10 TraesCS2A01G497300 chr2D 592283837 592286405 2568 False 267.000000 411 86.661000 2882 5476 7 chr2D.!!$F2 2594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
856 880 0.323542 TTCACGTCTCTCCCTCCCTC 60.324 60.000 0.00 0.00 0.00 4.30 F
1122 1154 0.034089 CCACCCCCTCATCAGGAAAC 60.034 60.000 0.00 0.00 43.65 2.78 F
1280 1315 0.536724 ACATGTAGTGGCGATGCAGA 59.463 50.000 0.00 0.00 0.00 4.26 F
1281 1316 1.139654 ACATGTAGTGGCGATGCAGAT 59.860 47.619 0.00 0.00 0.00 2.90 F
1414 1449 1.299544 GCCCGTTTTTCACCCGTTG 60.300 57.895 0.00 0.00 0.00 4.10 F
1453 1488 1.621317 TGCCGATCAGACCTAACAACA 59.379 47.619 0.00 0.00 0.00 3.33 F
1632 1682 2.201022 ACGAAGGCTGACAGTCGGT 61.201 57.895 15.74 7.14 37.81 4.69 F
1803 1853 2.358737 GAAGTGTCTGGCGGTGGG 60.359 66.667 0.00 0.00 0.00 4.61 F
3486 4077 2.710471 TGGCTATGGCAGGATCACATAA 59.290 45.455 2.58 0.00 40.87 1.90 F
3985 5800 2.910688 TTTAGGATGACGATGAGGCC 57.089 50.000 0.00 0.00 0.00 5.19 F
4946 6898 0.391130 TCTGTAACCATCAGCGTGCC 60.391 55.000 0.00 0.00 33.48 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2198 2372 2.224281 GGTGCCATTCATAGATCGGTGA 60.224 50.000 0.00 0.0 0.0 4.02 R
3099 3655 0.178891 AGGACACACTGGGACTGGAT 60.179 55.000 0.00 0.0 0.0 3.41 R
3229 3820 7.639113 TTGTCATGTTTAACTTCTTTCCAGT 57.361 32.000 0.00 0.0 0.0 4.00 R
3380 3971 3.686916 ACTAACTTCCTCACCTTCAGC 57.313 47.619 0.00 0.0 0.0 4.26 R
3409 4000 5.046159 TCACGGGAACAGAAAACCTATATGT 60.046 40.000 0.00 0.0 0.0 2.29 R
3549 4140 4.466827 TCTATAAGGTATGTCGCCACTGA 58.533 43.478 0.00 0.0 0.0 3.41 R
3668 4355 3.183754 CAGTGCATTGCCAACATACATG 58.816 45.455 6.12 0.0 0.0 3.21 R
3769 5252 2.866156 CGATGCTGACGGAACATACATT 59.134 45.455 0.00 0.0 0.0 2.71 R
4813 6761 1.600023 TACCTGTTTGTTTGCTCGGG 58.400 50.000 0.00 0.0 0.0 5.14 R
5780 7868 0.911769 ATCTGAAATCTGGGTCGGCA 59.088 50.000 0.00 0.0 0.0 5.69 R
6728 8876 0.036765 TATGCGAGCGGTTTGAAGGT 60.037 50.000 0.00 0.0 0.0 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 192 5.128663 CCATCCCCAAAAAGACCGATAAATT 59.871 40.000 0.00 0.00 0.00 1.82
561 562 1.410517 CACACGCAGGATGATAGGAGT 59.589 52.381 0.00 0.00 39.69 3.85
578 579 1.188219 AGTGAGATCGTGTGGCCAGT 61.188 55.000 5.11 0.00 0.00 4.00
634 635 6.134061 CGTGCACTTTTTAGACTTTAGGTTC 58.866 40.000 16.19 0.00 0.00 3.62
635 636 6.018180 CGTGCACTTTTTAGACTTTAGGTTCT 60.018 38.462 16.19 0.00 0.00 3.01
659 661 6.739331 AAAAATCAAGAACCCACATTACCA 57.261 33.333 0.00 0.00 0.00 3.25
703 719 9.077885 AGGCAGTATATAAGAGAGAGAGAAAAG 57.922 37.037 0.00 0.00 0.00 2.27
715 731 9.178758 AGAGAGAGAGAAAAGAAAGAGATACTC 57.821 37.037 0.00 0.00 0.00 2.59
720 736 5.172205 AGAAAAGAAAGAGATACTCCACGC 58.828 41.667 0.00 0.00 0.00 5.34
723 739 0.460311 AAAGAGATACTCCACGCCGG 59.540 55.000 0.00 0.00 0.00 6.13
724 740 0.683504 AAGAGATACTCCACGCCGGT 60.684 55.000 1.90 0.00 35.57 5.28
725 741 1.065928 GAGATACTCCACGCCGGTG 59.934 63.158 14.93 14.93 43.99 4.94
747 770 1.610554 GCGCTAACCCTACCTCCACA 61.611 60.000 0.00 0.00 0.00 4.17
753 776 2.683933 CCTACCTCCACACCGGCT 60.684 66.667 0.00 0.00 33.14 5.52
758 781 1.376037 CCTCCACACCGGCTTCTTC 60.376 63.158 0.00 0.00 33.14 2.87
760 783 2.111999 CTCCACACCGGCTTCTTCCA 62.112 60.000 0.00 0.00 33.14 3.53
800 824 1.065126 CCGGAGCAAAGGGAGAAGAAT 60.065 52.381 0.00 0.00 0.00 2.40
856 880 0.323542 TTCACGTCTCTCCCTCCCTC 60.324 60.000 0.00 0.00 0.00 4.30
862 886 4.144727 TCTCCCTCCCTCTCCGGC 62.145 72.222 0.00 0.00 0.00 6.13
881 905 4.305956 CTGGCCTTGGCCCTTGGT 62.306 66.667 26.03 0.00 0.00 3.67
895 919 1.149627 TTGGTTCCCAAGGTCACCG 59.850 57.895 0.00 0.00 38.75 4.94
907 931 1.542187 GGTCACCGTGGGTCTTAGCT 61.542 60.000 0.00 0.00 31.02 3.32
932 956 3.751175 GTGTTTGATGATCTTGAACGGGA 59.249 43.478 0.00 0.00 0.00 5.14
938 962 1.974957 TGATCTTGAACGGGAGAACCA 59.025 47.619 0.00 0.00 40.22 3.67
953 977 0.405585 AACCATGGTAGCTTGCAGGT 59.594 50.000 20.12 0.00 0.00 4.00
987 1011 2.191641 GCATCCTCCTGCCACCTC 59.808 66.667 0.00 0.00 36.10 3.85
1030 1062 1.390123 CTGTCCATACGTTTGACAGCG 59.610 52.381 21.17 7.40 46.50 5.18
1031 1063 1.000052 TGTCCATACGTTTGACAGCGA 60.000 47.619 7.64 0.00 34.28 4.93
1037 1069 2.007114 CGTTTGACAGCGACGACGA 61.007 57.895 12.29 0.00 42.66 4.20
1038 1070 1.481683 GTTTGACAGCGACGACGAC 59.518 57.895 12.29 2.46 42.66 4.34
1057 1089 1.738830 GACGAATTCGACGGCCCAA 60.739 57.895 33.05 0.00 43.02 4.12
1058 1090 1.963190 GACGAATTCGACGGCCCAAC 61.963 60.000 33.05 9.22 43.02 3.77
1069 1101 1.979155 GGCCCAACCTCCTTCAAGC 60.979 63.158 0.00 0.00 34.51 4.01
1110 1142 1.414866 AAAACAACATGCCCACCCCC 61.415 55.000 0.00 0.00 0.00 5.40
1120 1152 1.619363 CCCACCCCCTCATCAGGAA 60.619 63.158 0.00 0.00 43.65 3.36
1122 1154 0.034089 CCACCCCCTCATCAGGAAAC 60.034 60.000 0.00 0.00 43.65 2.78
1124 1156 1.452108 CCCCCTCATCAGGAAACGC 60.452 63.158 0.00 0.00 43.65 4.84
1134 1166 1.130955 CAGGAAACGCACAACATTGC 58.869 50.000 0.00 0.00 39.28 3.56
1137 1169 0.852136 GAAACGCACAACATTGCCAC 59.148 50.000 0.00 0.00 39.53 5.01
1144 1176 2.293122 GCACAACATTGCCACAAGAGTA 59.707 45.455 0.00 0.00 36.42 2.59
1145 1177 3.610114 GCACAACATTGCCACAAGAGTAG 60.610 47.826 0.00 0.00 36.42 2.57
1150 1182 4.910195 ACATTGCCACAAGAGTAGATTGA 58.090 39.130 0.00 0.00 0.00 2.57
1155 1187 5.620206 TGCCACAAGAGTAGATTGAAAAGA 58.380 37.500 0.00 0.00 0.00 2.52
1185 1217 2.366916 GGAAGATGTCCTCATGTCGGAT 59.633 50.000 9.20 0.00 43.98 4.18
1207 1242 1.202143 CCGATGATTCAGACGACGACA 60.202 52.381 0.00 0.00 0.00 4.35
1219 1254 1.067142 ACGACGACATACCACTTGCAT 60.067 47.619 0.00 0.00 0.00 3.96
1249 1284 1.281867 AGGCCGATGACAGGAAATTCA 59.718 47.619 0.00 0.00 0.00 2.57
1259 1294 7.148356 CGATGACAGGAAATTCAAGAGAATCAA 60.148 37.037 0.00 0.00 43.52 2.57
1269 1304 8.627208 AATTCAAGAGAATCAACACATGTAGT 57.373 30.769 0.00 0.00 43.52 2.73
1271 1306 5.934043 TCAAGAGAATCAACACATGTAGTGG 59.066 40.000 0.00 0.00 46.08 4.00
1276 1311 8.357036 GAGAATCAACACATGTAGTGGCGATG 62.357 46.154 0.00 0.00 44.05 3.84
1280 1315 0.536724 ACATGTAGTGGCGATGCAGA 59.463 50.000 0.00 0.00 0.00 4.26
1281 1316 1.139654 ACATGTAGTGGCGATGCAGAT 59.860 47.619 0.00 0.00 0.00 2.90
1282 1317 2.216046 CATGTAGTGGCGATGCAGATT 58.784 47.619 0.00 0.00 0.00 2.40
1296 1331 6.618166 GCGATGCAGATTATTCAGAAGATGAC 60.618 42.308 0.00 0.00 37.77 3.06
1377 1412 4.623409 GCCTCCGATGATGATGATTCAGAT 60.623 45.833 0.00 0.00 34.73 2.90
1409 1444 2.022240 TTGGCTGCCCGTTTTTCACC 62.022 55.000 17.53 0.00 0.00 4.02
1414 1449 1.299544 GCCCGTTTTTCACCCGTTG 60.300 57.895 0.00 0.00 0.00 4.10
1441 1476 1.893919 TTCCGTGGACATGCCGATCA 61.894 55.000 0.00 0.00 40.66 2.92
1442 1477 1.884464 CCGTGGACATGCCGATCAG 60.884 63.158 0.00 0.00 40.66 2.90
1452 1487 2.380084 TGCCGATCAGACCTAACAAC 57.620 50.000 0.00 0.00 0.00 3.32
1453 1488 1.621317 TGCCGATCAGACCTAACAACA 59.379 47.619 0.00 0.00 0.00 3.33
1527 1565 5.008331 CCATGTGATAGCAATATTCAGCCT 58.992 41.667 0.00 0.00 0.00 4.58
1602 1652 3.937706 CAGAGGATGATGGAAGTGACAAC 59.062 47.826 0.00 0.00 0.00 3.32
1632 1682 2.201022 ACGAAGGCTGACAGTCGGT 61.201 57.895 15.74 7.14 37.81 4.69
1803 1853 2.358737 GAAGTGTCTGGCGGTGGG 60.359 66.667 0.00 0.00 0.00 4.61
1860 1910 4.157120 CCCCCTCCGTACAAGCCG 62.157 72.222 0.00 0.00 0.00 5.52
1993 2165 3.932710 TGTTTCGTAGCAATGAGGATGAC 59.067 43.478 0.00 0.00 0.00 3.06
2021 2193 5.994054 GCTGCTCCTAAATATCAAGATCACA 59.006 40.000 0.00 0.00 0.00 3.58
2131 2305 8.141268 TCCAAGGAAACATTTATCAACAACTTC 58.859 33.333 0.00 0.00 0.00 3.01
2198 2372 5.757850 AAAGTTCGAGCTTTGTGATTTCT 57.242 34.783 24.10 0.00 37.31 2.52
2266 2493 6.756074 CACAGATGACTTCAGAGGTAGATTTC 59.244 42.308 0.00 0.00 0.00 2.17
2288 2518 7.926674 TTCTATGAATTCTGCAGAATGAACA 57.073 32.000 36.16 31.86 43.41 3.18
2296 2526 8.922058 AATTCTGCAGAATGAACATATTGTTC 57.078 30.769 36.16 12.33 44.72 3.18
2298 2528 8.188799 ATTCTGCAGAATGAACATATTGTTCTG 58.811 33.333 35.32 10.87 44.54 3.02
2313 2543 9.525409 CATATTGTTCTGATCTCCAAAAATTCC 57.475 33.333 0.00 0.00 0.00 3.01
2361 2591 4.701651 CCAAGAACACAGATTTATCCTGCA 59.298 41.667 0.00 0.00 35.14 4.41
2614 2962 7.094463 CCACTAGTCTCAAAAGCAAATTCAGAT 60.094 37.037 0.00 0.00 0.00 2.90
2677 3029 6.484364 TGCACTGGATGTAGAGAAATGATA 57.516 37.500 0.00 0.00 0.00 2.15
2679 3031 6.932960 TGCACTGGATGTAGAGAAATGATATG 59.067 38.462 0.00 0.00 0.00 1.78
2681 3033 7.443575 GCACTGGATGTAGAGAAATGATATGTT 59.556 37.037 0.00 0.00 0.00 2.71
2682 3034 9.987272 CACTGGATGTAGAGAAATGATATGTTA 57.013 33.333 0.00 0.00 0.00 2.41
2692 3044 9.084533 AGAGAAATGATATGTTAGTACTCCCTC 57.915 37.037 0.00 0.00 0.00 4.30
2693 3045 8.196378 AGAAATGATATGTTAGTACTCCCTCC 57.804 38.462 0.00 0.00 0.00 4.30
2694 3046 6.591750 AATGATATGTTAGTACTCCCTCCG 57.408 41.667 0.00 0.00 0.00 4.63
2695 3047 5.057843 TGATATGTTAGTACTCCCTCCGT 57.942 43.478 0.00 0.00 0.00 4.69
2696 3048 6.191657 TGATATGTTAGTACTCCCTCCGTA 57.808 41.667 0.00 0.00 0.00 4.02
2700 3052 6.803366 ATGTTAGTACTCCCTCCGTAAATT 57.197 37.500 0.00 0.00 0.00 1.82
2702 3054 7.716799 TGTTAGTACTCCCTCCGTAAATTAA 57.283 36.000 0.00 0.00 0.00 1.40
2712 3064 9.640963 CTCCCTCCGTAAATTAATATAAGAGTG 57.359 37.037 0.00 0.00 0.00 3.51
2714 3066 9.774413 CCCTCCGTAAATTAATATAAGAGTGTT 57.226 33.333 0.00 0.00 0.00 3.32
2742 3094 9.654663 AGATTACTAGTTTAGTGATCCAAACAC 57.345 33.333 0.00 0.00 46.90 3.32
2744 3096 9.654663 ATTACTAGTTTAGTGATCCAAACACTC 57.345 33.333 0.00 0.00 45.58 3.51
2745 3097 7.304497 ACTAGTTTAGTGATCCAAACACTCT 57.696 36.000 13.81 0.00 45.58 3.24
2746 3098 7.736893 ACTAGTTTAGTGATCCAAACACTCTT 58.263 34.615 13.81 0.76 45.58 2.85
2747 3099 8.867097 ACTAGTTTAGTGATCCAAACACTCTTA 58.133 33.333 13.81 1.60 45.58 2.10
2748 3100 9.877178 CTAGTTTAGTGATCCAAACACTCTTAT 57.123 33.333 13.81 0.00 45.58 1.73
2885 3238 7.095523 GCAAACTGACATGTTTAATTGCTTCAT 60.096 33.333 22.41 0.00 37.98 2.57
2970 3526 9.995003 AGGTACAGATTTGCAAATTTTTAATCA 57.005 25.926 24.81 4.10 0.00 2.57
3229 3820 5.476254 TCATGATTGGTAATGTGTTCTGCAA 59.524 36.000 0.00 0.00 0.00 4.08
3286 3877 2.833943 GGTTGGCCTTTTGGAATGATCT 59.166 45.455 3.32 0.00 44.07 2.75
3380 3971 2.938956 AATATGAGAAGGCCCGGAAG 57.061 50.000 0.73 0.00 0.00 3.46
3408 3999 5.751586 AGGTGAGGAAGTTAGTTTTGTGAA 58.248 37.500 0.00 0.00 0.00 3.18
3409 4000 6.184789 AGGTGAGGAAGTTAGTTTTGTGAAA 58.815 36.000 0.00 0.00 0.00 2.69
3430 4021 6.373216 TGAAACATATAGGTTTTCTGTTCCCG 59.627 38.462 15.98 0.00 40.85 5.14
3433 4024 5.046159 ACATATAGGTTTTCTGTTCCCGTGA 60.046 40.000 0.00 0.00 0.00 4.35
3436 4027 3.562182 AGGTTTTCTGTTCCCGTGAAAT 58.438 40.909 0.00 0.00 30.79 2.17
3443 4034 7.747155 TTTCTGTTCCCGTGAAATAATAACA 57.253 32.000 0.00 0.00 30.79 2.41
3486 4077 2.710471 TGGCTATGGCAGGATCACATAA 59.290 45.455 2.58 0.00 40.87 1.90
3488 4079 4.144297 GGCTATGGCAGGATCACATAAAA 58.856 43.478 2.58 0.00 40.87 1.52
3549 4140 5.859205 AGAGCAGGTGAAGAAACAAATTT 57.141 34.783 0.00 0.00 0.00 1.82
3557 4148 4.207019 GTGAAGAAACAAATTTCAGTGGCG 59.793 41.667 2.86 0.00 45.78 5.69
3668 4355 7.391148 TTTTATTCAAGGAGGTTGTGATAGC 57.609 36.000 0.00 0.00 37.43 2.97
3762 5245 6.621737 CACAACTGTGCTATGCTTTTATTG 57.378 37.500 0.00 0.00 39.39 1.90
3763 5246 6.151691 CACAACTGTGCTATGCTTTTATTGT 58.848 36.000 0.00 0.00 39.39 2.71
3765 5248 7.807433 CACAACTGTGCTATGCTTTTATTGTAA 59.193 33.333 0.00 0.00 39.39 2.41
3766 5249 7.807907 ACAACTGTGCTATGCTTTTATTGTAAC 59.192 33.333 0.00 0.00 0.00 2.50
3767 5250 7.447374 ACTGTGCTATGCTTTTATTGTAACA 57.553 32.000 0.00 0.00 0.00 2.41
3768 5251 8.055279 ACTGTGCTATGCTTTTATTGTAACAT 57.945 30.769 0.00 0.00 0.00 2.71
3769 5252 9.173021 ACTGTGCTATGCTTTTATTGTAACATA 57.827 29.630 0.00 0.00 0.00 2.29
3858 5656 9.241919 TGGACACAAATAATTTACATGATGAGT 57.758 29.630 0.00 0.00 0.00 3.41
3867 5669 6.949352 ATTTACATGATGAGTCATTCACCC 57.051 37.500 7.16 0.00 42.37 4.61
3885 5687 7.380423 TTCACCCAAAATTAATTCCTTTCCA 57.620 32.000 0.10 0.00 0.00 3.53
3985 5800 2.910688 TTTAGGATGACGATGAGGCC 57.089 50.000 0.00 0.00 0.00 5.19
4068 5883 3.149196 TGCAGGTCTTGATCTTTGTTCC 58.851 45.455 0.00 0.00 0.00 3.62
4232 6072 4.036518 AGGAATTCTGTGCAGGTATCTCT 58.963 43.478 5.23 0.00 0.00 3.10
4289 6172 7.041098 CCTGCCCTAGACAAATATTATTGACAC 60.041 40.741 0.00 0.00 34.38 3.67
4290 6173 7.342581 TGCCCTAGACAAATATTATTGACACA 58.657 34.615 0.00 0.00 34.38 3.72
4423 6308 7.064253 ACTGCAAAAGTCTTCCGTACATATAAC 59.936 37.037 0.00 0.00 31.64 1.89
4476 6361 5.273674 TCAATGCAAATTTCACTGTTCCA 57.726 34.783 0.00 0.00 0.00 3.53
4492 6377 4.798882 TGTTCCATACCAGGTCTTTGTTT 58.201 39.130 0.00 0.00 0.00 2.83
4540 6433 4.207891 TCTAAGGGCTTGATGAAGTGAC 57.792 45.455 0.00 0.00 0.00 3.67
4640 6533 3.305964 CTGCAGCTCAAATCAACAACAG 58.694 45.455 0.00 0.00 0.00 3.16
4663 6556 6.574832 CAGACATTTAGTTTGTCAATGACACG 59.425 38.462 16.50 0.45 44.73 4.49
4770 6718 7.962918 GTGTGATGGTATTACAGTTGAATGAAC 59.037 37.037 0.00 0.00 34.40 3.18
4834 6782 2.556622 CCCGAGCAAACAAACAGGTAAT 59.443 45.455 0.00 0.00 0.00 1.89
4846 6794 3.963428 ACAGGTAATGTCTGTCACTCC 57.037 47.619 0.00 0.00 41.10 3.85
4946 6898 0.391130 TCTGTAACCATCAGCGTGCC 60.391 55.000 0.00 0.00 33.48 5.01
4976 6928 4.783560 ATCACATGATTCCCAGATGACA 57.216 40.909 0.00 0.00 0.00 3.58
5065 7017 3.505680 TGCTAGTTTAATGTGGGTGCAAG 59.494 43.478 0.00 0.00 0.00 4.01
5084 7036 6.035327 GTGCAAGTGATTGCCTCAAATTTATC 59.965 38.462 10.22 0.00 46.82 1.75
5093 7045 4.949856 TGCCTCAAATTTATCCTTGTCCTC 59.050 41.667 0.00 0.00 0.00 3.71
5104 7056 9.807921 ATTTATCCTTGTCCTCTAAACTTTTGA 57.192 29.630 0.00 0.00 0.00 2.69
5105 7057 8.617290 TTATCCTTGTCCTCTAAACTTTTGAC 57.383 34.615 0.00 0.00 0.00 3.18
5159 7136 4.578105 GGGATGAATGGAAAGCAGACTTAG 59.422 45.833 0.00 0.00 34.05 2.18
5160 7137 5.189180 GGATGAATGGAAAGCAGACTTAGT 58.811 41.667 0.00 0.00 34.05 2.24
5189 7166 2.269940 AGAAAGGAAAGCCTCTAGCCA 58.730 47.619 0.00 0.00 46.28 4.75
5275 7258 5.301551 TGTCATGTTTTGTACTTGCCTGAAT 59.698 36.000 0.00 0.00 33.21 2.57
5284 7267 7.418337 TTGTACTTGCCTGAATATAGAGTGA 57.582 36.000 0.00 0.00 0.00 3.41
5287 7270 5.923204 ACTTGCCTGAATATAGAGTGAAGG 58.077 41.667 0.00 0.00 0.00 3.46
5302 7285 6.897986 AGAGTGAAGGCAATCTCATAAATCT 58.102 36.000 0.00 0.00 45.53 2.40
5319 7307 4.851639 AATCTACTTGCAGGTTGGAGAT 57.148 40.909 6.84 6.85 0.00 2.75
5356 7344 6.721208 AGATTGAAGCCAAGATAAAGGAAACA 59.279 34.615 0.00 0.00 35.48 2.83
5363 7351 7.577303 AGCCAAGATAAAGGAAACAGATATCA 58.423 34.615 5.32 0.00 0.00 2.15
5419 7407 9.331282 GTAGCACTAGGAACATCAAAGATTAAT 57.669 33.333 0.00 0.00 0.00 1.40
5508 7496 0.757188 TCCCTTGGATCTCCTCTCGC 60.757 60.000 0.00 0.00 36.82 5.03
5546 7534 1.339438 GCATCTCTGCTCCTTGACCAA 60.339 52.381 0.00 0.00 45.32 3.67
5555 7543 5.843969 TCTGCTCCTTGACCAACCATATATA 59.156 40.000 0.00 0.00 0.00 0.86
5563 7551 7.657761 CCTTGACCAACCATATATACAAGAGAC 59.342 40.741 0.00 0.00 36.59 3.36
5565 7553 8.084985 TGACCAACCATATATACAAGAGACAA 57.915 34.615 0.00 0.00 0.00 3.18
5566 7554 8.713971 TGACCAACCATATATACAAGAGACAAT 58.286 33.333 0.00 0.00 0.00 2.71
5567 7555 9.561069 GACCAACCATATATACAAGAGACAATT 57.439 33.333 0.00 0.00 0.00 2.32
5568 7556 9.561069 ACCAACCATATATACAAGAGACAATTC 57.439 33.333 0.00 0.00 0.00 2.17
5569 7557 9.003658 CCAACCATATATACAAGAGACAATTCC 57.996 37.037 0.00 0.00 0.00 3.01
5570 7558 9.003658 CAACCATATATACAAGAGACAATTCCC 57.996 37.037 0.00 0.00 0.00 3.97
5571 7559 8.511748 ACCATATATACAAGAGACAATTCCCT 57.488 34.615 0.00 0.00 0.00 4.20
5572 7560 8.598041 ACCATATATACAAGAGACAATTCCCTC 58.402 37.037 0.00 0.00 0.00 4.30
5573 7561 8.597167 CCATATATACAAGAGACAATTCCCTCA 58.403 37.037 6.43 0.00 32.07 3.86
5576 7564 4.982241 ACAAGAGACAATTCCCTCAAGA 57.018 40.909 6.43 0.00 32.07 3.02
5577 7565 5.310409 ACAAGAGACAATTCCCTCAAGAA 57.690 39.130 6.43 0.00 32.07 2.52
5578 7566 5.694995 ACAAGAGACAATTCCCTCAAGAAA 58.305 37.500 6.43 0.00 32.07 2.52
5579 7567 6.129179 ACAAGAGACAATTCCCTCAAGAAAA 58.871 36.000 6.43 0.00 32.07 2.29
5580 7568 6.607198 ACAAGAGACAATTCCCTCAAGAAAAA 59.393 34.615 6.43 0.00 32.07 1.94
5581 7569 7.288621 ACAAGAGACAATTCCCTCAAGAAAAAT 59.711 33.333 6.43 0.00 32.07 1.82
5582 7570 8.796475 CAAGAGACAATTCCCTCAAGAAAAATA 58.204 33.333 6.43 0.00 32.07 1.40
5583 7571 9.539194 AAGAGACAATTCCCTCAAGAAAAATAT 57.461 29.630 6.43 0.00 32.07 1.28
5651 7639 6.362248 ACATAAAGCCATATAAACCGTCCTT 58.638 36.000 0.00 0.00 0.00 3.36
5666 7654 7.563888 AACCGTCCTTCCTATAAAATTAAGC 57.436 36.000 0.00 0.00 0.00 3.09
5738 7826 3.768406 TGTTTTTGTGTGTGTGCAGATC 58.232 40.909 0.00 0.00 0.00 2.75
5750 7838 1.392853 GTGCAGATCTTCAGCAAGACG 59.607 52.381 7.72 0.00 40.56 4.18
5780 7868 2.386829 AATTTGGATGGGCGATGGAT 57.613 45.000 0.00 0.00 0.00 3.41
5789 7877 4.545706 GCGATGGATGCCGACCCA 62.546 66.667 0.00 0.00 36.79 4.51
5865 7953 2.737881 CCCTTATCCCCGACCGCAA 61.738 63.158 0.00 0.00 0.00 4.85
5866 7954 1.450211 CCTTATCCCCGACCGCAAT 59.550 57.895 0.00 0.00 0.00 3.56
5867 7955 0.602905 CCTTATCCCCGACCGCAATC 60.603 60.000 0.00 0.00 0.00 2.67
5888 7976 2.167487 CGGAGCTAGGAAAGAAAGAGCT 59.833 50.000 0.00 0.00 45.94 4.09
5892 7980 2.420827 GCTAGGAAAGAAAGAGCTCCCC 60.421 54.545 10.93 0.00 0.00 4.81
5906 7994 1.210722 GCTCCCCGAAAGAAGGAATCT 59.789 52.381 0.00 0.00 41.32 2.40
5907 7995 2.434702 GCTCCCCGAAAGAAGGAATCTA 59.565 50.000 0.00 0.00 37.42 1.98
5908 7996 3.741700 GCTCCCCGAAAGAAGGAATCTAC 60.742 52.174 0.00 0.00 37.42 2.59
5920 8008 4.927978 AGGAATCTACGGTCATTCTCTG 57.072 45.455 10.79 0.00 30.85 3.35
5953 8041 3.684305 GCTTTTGCTTTTGTCCTGTGTTT 59.316 39.130 0.00 0.00 43.35 2.83
5966 8054 2.293122 CCTGTGTTTGCCATCTTTCGAA 59.707 45.455 0.00 0.00 0.00 3.71
5989 8077 3.613877 TTGTATGCGCTTGGCCCGA 62.614 57.895 9.73 0.00 42.61 5.14
5997 8085 1.666209 CGCTTGGCCCGATGGAATTT 61.666 55.000 0.00 0.00 0.00 1.82
6001 8089 3.815809 CTTGGCCCGATGGAATTTAGTA 58.184 45.455 0.00 0.00 0.00 1.82
6035 8125 0.166597 GATGACGGTGTGTGCATGTG 59.833 55.000 0.00 0.00 0.00 3.21
6059 8149 5.506982 GCTTGAGAACTGCTGACTGATTTTT 60.507 40.000 0.00 0.00 0.00 1.94
6085 8175 5.047164 TGGAAGAAATGCTACAATGTGCAAT 60.047 36.000 12.79 4.16 42.74 3.56
6099 8189 8.970691 ACAATGTGCAATTTTTGATAGAGTAC 57.029 30.769 0.00 0.00 0.00 2.73
6102 8192 9.846248 AATGTGCAATTTTTGATAGAGTACTTC 57.154 29.630 0.00 0.00 0.00 3.01
6104 8194 8.289618 TGTGCAATTTTTGATAGAGTACTTCAC 58.710 33.333 0.00 0.00 0.00 3.18
6124 8214 0.895100 TGGTTGTGCCATGCTCTTCC 60.895 55.000 0.00 0.00 43.61 3.46
6136 8226 6.486657 TGCCATGCTCTTCCTGTATTTTATAC 59.513 38.462 0.00 0.00 0.00 1.47
6137 8227 6.347725 GCCATGCTCTTCCTGTATTTTATACG 60.348 42.308 0.00 0.00 0.00 3.06
6163 8255 0.823356 AACAAGAATGCACTGGCGGT 60.823 50.000 0.00 0.00 45.35 5.68
6178 8270 1.737793 GGCGGTGACTGAATTTGGTAG 59.262 52.381 0.00 0.00 0.00 3.18
6179 8271 1.130561 GCGGTGACTGAATTTGGTAGC 59.869 52.381 0.00 0.00 0.00 3.58
6180 8272 1.737793 CGGTGACTGAATTTGGTAGCC 59.262 52.381 0.00 0.00 0.00 3.93
6181 8273 2.615493 CGGTGACTGAATTTGGTAGCCT 60.615 50.000 0.00 0.00 0.00 4.58
6182 8274 2.749621 GGTGACTGAATTTGGTAGCCTG 59.250 50.000 0.00 0.00 0.00 4.85
6183 8275 3.412386 GTGACTGAATTTGGTAGCCTGT 58.588 45.455 0.00 0.00 0.00 4.00
6188 8280 6.374333 TGACTGAATTTGGTAGCCTGTATTTC 59.626 38.462 0.00 0.00 0.00 2.17
6190 8282 4.638421 TGAATTTGGTAGCCTGTATTTCGG 59.362 41.667 0.00 0.00 0.00 4.30
6205 8297 7.480542 CCTGTATTTCGGAAACTTCAAATTACG 59.519 37.037 5.12 0.00 34.19 3.18
6210 8302 3.666797 CGGAAACTTCAAATTACGGTTGC 59.333 43.478 0.00 0.00 0.00 4.17
6211 8303 3.666797 GGAAACTTCAAATTACGGTTGCG 59.333 43.478 0.00 0.00 0.00 4.85
6227 8319 0.818445 TGCGGGGAAGCGTTTTTACA 60.818 50.000 0.00 0.00 40.67 2.41
6239 8331 5.460646 AGCGTTTTTACATGATCCAAACTG 58.539 37.500 0.00 2.01 0.00 3.16
6242 8334 6.434596 CGTTTTTACATGATCCAAACTGTGA 58.565 36.000 0.00 0.00 0.00 3.58
6257 8349 1.139498 TGTGAGCTCCCATCCCCAAA 61.139 55.000 12.15 0.00 0.00 3.28
6269 8361 3.579586 CCATCCCCAAATATGAATGGTGG 59.420 47.826 0.00 0.00 34.79 4.61
6310 8402 3.124921 CAATGCCGGTGGTCGTCC 61.125 66.667 1.90 0.00 37.11 4.79
6321 8413 1.375523 GGTCGTCCACCGCAATCTT 60.376 57.895 0.00 0.00 34.56 2.40
6346 8461 4.869440 CCAGCTCTGCTCGCCTCG 62.869 72.222 0.00 0.00 36.40 4.63
6350 8465 3.517140 CTCTGCTCGCCTCGCTCT 61.517 66.667 0.00 0.00 0.00 4.09
6351 8466 3.754740 CTCTGCTCGCCTCGCTCTG 62.755 68.421 0.00 0.00 0.00 3.35
6355 8470 2.331098 CTCGCCTCGCTCTGCTAG 59.669 66.667 0.00 0.00 0.00 3.42
6372 8496 1.885887 CTAGCTCTCCTCCATTCTCCG 59.114 57.143 0.00 0.00 0.00 4.63
6375 8499 2.081425 CTCTCCTCCATTCTCCGGCG 62.081 65.000 0.00 0.00 0.00 6.46
6418 8542 2.002127 GCGTCCTCTTTGCGATGAG 58.998 57.895 9.45 9.45 0.00 2.90
6515 8663 2.127003 CTCGCGCACGTGTAGACA 60.127 61.111 18.38 1.47 41.18 3.41
6569 8717 1.218316 GTGGCTACCCGAGTGGAAG 59.782 63.158 0.00 0.00 37.49 3.46
6634 8782 4.673298 CACGTACCCACTGCGGCA 62.673 66.667 1.29 1.29 31.13 5.69
6674 8822 3.710722 CTGGAGGAAGTGCGGCCT 61.711 66.667 0.00 0.00 37.18 5.19
6697 8845 3.231736 GGCCGGCGGAGATTCCTA 61.232 66.667 33.44 0.00 33.30 2.94
6698 8846 2.803817 GGCCGGCGGAGATTCCTAA 61.804 63.158 33.44 0.00 33.30 2.69
6699 8847 1.145377 GCCGGCGGAGATTCCTAAA 59.855 57.895 33.44 0.00 33.30 1.85
6700 8848 0.250338 GCCGGCGGAGATTCCTAAAT 60.250 55.000 33.44 0.00 33.30 1.40
6701 8849 1.001633 GCCGGCGGAGATTCCTAAATA 59.998 52.381 33.44 0.00 33.30 1.40
6702 8850 2.549349 GCCGGCGGAGATTCCTAAATAA 60.549 50.000 33.44 0.00 33.30 1.40
6703 8851 3.735591 CCGGCGGAGATTCCTAAATAAA 58.264 45.455 24.41 0.00 33.30 1.40
6704 8852 4.131596 CCGGCGGAGATTCCTAAATAAAA 58.868 43.478 24.41 0.00 33.30 1.52
6705 8853 4.577283 CCGGCGGAGATTCCTAAATAAAAA 59.423 41.667 24.41 0.00 33.30 1.94
6706 8854 5.505159 CCGGCGGAGATTCCTAAATAAAAAC 60.505 44.000 24.41 0.00 33.30 2.43
6707 8855 5.065474 CGGCGGAGATTCCTAAATAAAAACA 59.935 40.000 0.00 0.00 33.30 2.83
6708 8856 6.238648 CGGCGGAGATTCCTAAATAAAAACAT 60.239 38.462 0.00 0.00 33.30 2.71
6709 8857 7.489160 GGCGGAGATTCCTAAATAAAAACATT 58.511 34.615 0.00 0.00 33.30 2.71
6710 8858 7.435192 GGCGGAGATTCCTAAATAAAAACATTG 59.565 37.037 0.00 0.00 33.30 2.82
6711 8859 7.435192 GCGGAGATTCCTAAATAAAAACATTGG 59.565 37.037 0.00 0.00 33.30 3.16
6712 8860 7.920682 CGGAGATTCCTAAATAAAAACATTGGG 59.079 37.037 0.00 0.00 33.30 4.12
6713 8861 8.204160 GGAGATTCCTAAATAAAAACATTGGGG 58.796 37.037 0.00 0.00 32.53 4.96
6714 8862 7.564793 AGATTCCTAAATAAAAACATTGGGGC 58.435 34.615 0.00 0.00 0.00 5.80
6715 8863 6.688073 TTCCTAAATAAAAACATTGGGGCA 57.312 33.333 0.00 0.00 0.00 5.36
6716 8864 6.882768 TCCTAAATAAAAACATTGGGGCAT 57.117 33.333 0.00 0.00 0.00 4.40
6717 8865 6.883744 TCCTAAATAAAAACATTGGGGCATC 58.116 36.000 0.00 0.00 0.00 3.91
6718 8866 6.671779 TCCTAAATAAAAACATTGGGGCATCT 59.328 34.615 0.00 0.00 0.00 2.90
6719 8867 7.181845 TCCTAAATAAAAACATTGGGGCATCTT 59.818 33.333 0.00 0.00 0.00 2.40
6720 8868 7.495606 CCTAAATAAAAACATTGGGGCATCTTC 59.504 37.037 0.00 0.00 0.00 2.87
6721 8869 6.371595 AATAAAAACATTGGGGCATCTTCA 57.628 33.333 0.00 0.00 0.00 3.02
6722 8870 4.703379 AAAAACATTGGGGCATCTTCAA 57.297 36.364 0.00 0.00 0.00 2.69
6723 8871 4.703379 AAAACATTGGGGCATCTTCAAA 57.297 36.364 0.00 0.00 0.00 2.69
6724 8872 4.703379 AAACATTGGGGCATCTTCAAAA 57.297 36.364 0.00 0.00 0.00 2.44
6725 8873 3.683365 ACATTGGGGCATCTTCAAAAC 57.317 42.857 0.00 0.00 0.00 2.43
6726 8874 2.029110 ACATTGGGGCATCTTCAAAACG 60.029 45.455 0.00 0.00 0.00 3.60
6727 8875 0.965439 TTGGGGCATCTTCAAAACGG 59.035 50.000 0.00 0.00 0.00 4.44
6728 8876 0.111446 TGGGGCATCTTCAAAACGGA 59.889 50.000 0.00 0.00 0.00 4.69
6729 8877 0.526211 GGGGCATCTTCAAAACGGAC 59.474 55.000 0.00 0.00 0.00 4.79
6730 8878 0.526211 GGGCATCTTCAAAACGGACC 59.474 55.000 0.00 0.00 0.00 4.46
6731 8879 1.534729 GGCATCTTCAAAACGGACCT 58.465 50.000 0.00 0.00 0.00 3.85
6732 8880 1.886542 GGCATCTTCAAAACGGACCTT 59.113 47.619 0.00 0.00 0.00 3.50
6733 8881 2.095212 GGCATCTTCAAAACGGACCTTC 60.095 50.000 0.00 0.00 0.00 3.46
6734 8882 2.552315 GCATCTTCAAAACGGACCTTCA 59.448 45.455 0.00 0.00 0.00 3.02
6735 8883 3.004315 GCATCTTCAAAACGGACCTTCAA 59.996 43.478 0.00 0.00 0.00 2.69
6736 8884 4.499019 GCATCTTCAAAACGGACCTTCAAA 60.499 41.667 0.00 0.00 0.00 2.69
6737 8885 4.625972 TCTTCAAAACGGACCTTCAAAC 57.374 40.909 0.00 0.00 0.00 2.93
6738 8886 3.379057 TCTTCAAAACGGACCTTCAAACC 59.621 43.478 0.00 0.00 0.00 3.27
6742 8890 3.562635 CGGACCTTCAAACCGCTC 58.437 61.111 0.00 0.00 40.19 5.03
6743 8891 2.380410 CGGACCTTCAAACCGCTCG 61.380 63.158 0.00 0.00 40.19 5.03
6744 8892 2.677979 GGACCTTCAAACCGCTCGC 61.678 63.158 0.00 0.00 0.00 5.03
6745 8893 1.959226 GACCTTCAAACCGCTCGCA 60.959 57.895 0.00 0.00 0.00 5.10
6746 8894 1.298859 GACCTTCAAACCGCTCGCAT 61.299 55.000 0.00 0.00 0.00 4.73
6747 8895 0.036765 ACCTTCAAACCGCTCGCATA 60.037 50.000 0.00 0.00 0.00 3.14
6748 8896 1.299541 CCTTCAAACCGCTCGCATAT 58.700 50.000 0.00 0.00 0.00 1.78
6749 8897 2.159014 ACCTTCAAACCGCTCGCATATA 60.159 45.455 0.00 0.00 0.00 0.86
6750 8898 3.067106 CCTTCAAACCGCTCGCATATAT 58.933 45.455 0.00 0.00 0.00 0.86
6751 8899 3.498397 CCTTCAAACCGCTCGCATATATT 59.502 43.478 0.00 0.00 0.00 1.28
6752 8900 4.377431 CCTTCAAACCGCTCGCATATATTC 60.377 45.833 0.00 0.00 0.00 1.75
6753 8901 2.729360 TCAAACCGCTCGCATATATTCG 59.271 45.455 0.00 0.00 0.00 3.34
6754 8902 2.717580 AACCGCTCGCATATATTCGA 57.282 45.000 7.25 7.25 0.00 3.71
6755 8903 2.717580 ACCGCTCGCATATATTCGAA 57.282 45.000 8.76 0.00 34.07 3.71
6756 8904 2.325761 ACCGCTCGCATATATTCGAAC 58.674 47.619 8.76 3.78 34.07 3.95
6757 8905 2.030185 ACCGCTCGCATATATTCGAACT 60.030 45.455 8.76 0.00 34.07 3.01
6758 8906 2.342651 CCGCTCGCATATATTCGAACTG 59.657 50.000 8.76 0.00 34.07 3.16
6759 8907 2.222376 CGCTCGCATATATTCGAACTGC 60.222 50.000 8.76 7.89 34.07 4.40
6781 8929 5.354054 CGAAAGCCATCCAATAGAATCTG 57.646 43.478 0.00 0.00 0.00 2.90
6782 8930 4.818546 CGAAAGCCATCCAATAGAATCTGT 59.181 41.667 0.00 0.00 0.00 3.41
6783 8931 5.991606 CGAAAGCCATCCAATAGAATCTGTA 59.008 40.000 0.00 0.00 0.00 2.74
6784 8932 6.652481 CGAAAGCCATCCAATAGAATCTGTAT 59.348 38.462 0.00 0.00 0.00 2.29
6785 8933 7.148507 CGAAAGCCATCCAATAGAATCTGTATC 60.149 40.741 0.00 0.00 0.00 2.24
6786 8934 5.728471 AGCCATCCAATAGAATCTGTATCG 58.272 41.667 0.00 0.00 0.00 2.92
6787 8935 5.481824 AGCCATCCAATAGAATCTGTATCGA 59.518 40.000 0.00 0.00 0.00 3.59
6788 8936 6.155910 AGCCATCCAATAGAATCTGTATCGAT 59.844 38.462 2.16 2.16 0.00 3.59
6789 8937 6.478344 GCCATCCAATAGAATCTGTATCGATC 59.522 42.308 0.00 0.00 0.00 3.69
6790 8938 7.632462 GCCATCCAATAGAATCTGTATCGATCT 60.632 40.741 0.00 0.00 0.00 2.75
6791 8939 7.705752 CCATCCAATAGAATCTGTATCGATCTG 59.294 40.741 0.00 0.00 0.00 2.90
6792 8940 7.767250 TCCAATAGAATCTGTATCGATCTGT 57.233 36.000 0.00 0.00 0.00 3.41
6793 8941 7.821652 TCCAATAGAATCTGTATCGATCTGTC 58.178 38.462 0.00 0.00 0.00 3.51
6804 8952 2.878743 GATCTGTCGAGCGATGTGG 58.121 57.895 1.41 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 192 0.951558 GCGTGCTTCCCTTTCTTCAA 59.048 50.000 0.00 0.00 0.00 2.69
561 562 0.817654 CTACTGGCCACACGATCTCA 59.182 55.000 0.00 0.00 0.00 3.27
584 585 0.737219 ATTTAGACGAGTCGACCGGG 59.263 55.000 21.50 12.44 34.09 5.73
588 589 3.027710 CGCACTATTTAGACGAGTCGAC 58.972 50.000 21.50 13.89 34.09 4.20
634 635 7.891561 TGGTAATGTGGGTTCTTGATTTTTAG 58.108 34.615 0.00 0.00 0.00 1.85
635 636 7.841282 TGGTAATGTGGGTTCTTGATTTTTA 57.159 32.000 0.00 0.00 0.00 1.52
646 647 1.373590 GCGCGATGGTAATGTGGGTT 61.374 55.000 12.10 0.00 0.00 4.11
648 649 1.523711 AGCGCGATGGTAATGTGGG 60.524 57.895 12.10 0.00 0.00 4.61
655 657 0.318699 GCAGATACAGCGCGATGGTA 60.319 55.000 29.52 17.87 0.00 3.25
659 661 0.877649 CTTGGCAGATACAGCGCGAT 60.878 55.000 12.10 0.00 0.00 4.58
703 719 1.536284 CCGGCGTGGAGTATCTCTTTC 60.536 57.143 6.01 0.00 42.00 2.62
705 721 0.683504 ACCGGCGTGGAGTATCTCTT 60.684 55.000 6.01 0.00 42.00 2.85
723 739 2.889018 GTAGGGTTAGCGCGGCAC 60.889 66.667 8.83 0.00 0.00 5.01
724 740 4.151582 GGTAGGGTTAGCGCGGCA 62.152 66.667 8.83 0.00 0.00 5.69
725 741 3.786901 GAGGTAGGGTTAGCGCGGC 62.787 68.421 8.83 0.00 32.56 6.53
730 753 0.540454 GGTGTGGAGGTAGGGTTAGC 59.460 60.000 0.00 0.00 0.00 3.09
731 754 0.822164 CGGTGTGGAGGTAGGGTTAG 59.178 60.000 0.00 0.00 0.00 2.34
747 770 4.699522 GCCGTGGAAGAAGCCGGT 62.700 66.667 1.90 0.00 42.36 5.28
753 776 4.011517 GGGGTCGCCGTGGAAGAA 62.012 66.667 0.00 0.00 0.00 2.52
820 844 1.632948 GAAGTTACCTTGGGCGCGTC 61.633 60.000 8.43 4.38 0.00 5.19
841 865 1.152839 GGAGAGGGAGGGAGAGACG 60.153 68.421 0.00 0.00 0.00 4.18
881 905 2.833227 CCACGGTGACCTTGGGAA 59.167 61.111 18.74 0.00 39.01 3.97
895 919 2.165319 AACACGAAGCTAAGACCCAC 57.835 50.000 0.00 0.00 0.00 4.61
907 931 4.084066 CCGTTCAAGATCATCAAACACGAA 60.084 41.667 0.00 0.00 0.00 3.85
932 956 1.340405 CCTGCAAGCTACCATGGTTCT 60.340 52.381 25.38 17.53 0.00 3.01
938 962 0.987294 ACAGACCTGCAAGCTACCAT 59.013 50.000 0.00 0.00 0.00 3.55
982 1006 2.005451 CATTGCTTCTTCCTCGAGGTG 58.995 52.381 30.17 22.78 36.34 4.00
983 1007 1.677217 GCATTGCTTCTTCCTCGAGGT 60.677 52.381 30.17 5.42 36.34 3.85
984 1008 1.012841 GCATTGCTTCTTCCTCGAGG 58.987 55.000 26.32 26.32 0.00 4.63
986 1010 0.740868 CGGCATTGCTTCTTCCTCGA 60.741 55.000 8.82 0.00 0.00 4.04
987 1011 1.709147 CCGGCATTGCTTCTTCCTCG 61.709 60.000 8.82 0.76 0.00 4.63
1013 1045 1.705256 GTCGCTGTCAAACGTATGGA 58.295 50.000 0.00 0.00 0.00 3.41
1029 1061 1.762884 CGAATTCGTCGTCGTCGTCG 61.763 60.000 19.67 14.18 45.09 5.12
1030 1062 1.892312 CGAATTCGTCGTCGTCGTC 59.108 57.895 19.67 1.97 45.09 4.20
1031 1063 4.032080 CGAATTCGTCGTCGTCGT 57.968 55.556 19.67 0.00 45.09 4.34
1057 1089 4.394712 CGGCCGCTTGAAGGAGGT 62.395 66.667 14.67 0.00 0.00 3.85
1058 1090 4.082523 TCGGCCGCTTGAAGGAGG 62.083 66.667 23.51 0.00 0.00 4.30
1110 1142 1.872952 TGTTGTGCGTTTCCTGATGAG 59.127 47.619 0.00 0.00 0.00 2.90
1120 1152 0.174389 TTGTGGCAATGTTGTGCGTT 59.826 45.000 0.00 0.00 45.91 4.84
1122 1154 0.030504 TCTTGTGGCAATGTTGTGCG 59.969 50.000 0.00 0.00 45.91 5.34
1124 1156 3.814842 TCTACTCTTGTGGCAATGTTGTG 59.185 43.478 0.00 0.00 0.00 3.33
1134 1166 6.234177 AGGTCTTTTCAATCTACTCTTGTGG 58.766 40.000 0.00 0.00 0.00 4.17
1137 1169 7.605691 ACATGAGGTCTTTTCAATCTACTCTTG 59.394 37.037 0.00 0.00 35.95 3.02
1144 1176 5.246981 TCCACATGAGGTCTTTTCAATCT 57.753 39.130 9.16 0.00 0.00 2.40
1145 1177 5.707298 TCTTCCACATGAGGTCTTTTCAATC 59.293 40.000 9.16 0.00 0.00 2.67
1150 1182 4.990526 ACATCTTCCACATGAGGTCTTTT 58.009 39.130 9.16 0.00 0.00 2.27
1185 1217 2.031314 GTCGTCGTCTGAATCATCGGTA 59.969 50.000 7.77 0.00 33.40 4.02
1207 1242 5.047092 CCTTTTTCCTCAATGCAAGTGGTAT 60.047 40.000 9.55 0.00 29.44 2.73
1219 1254 2.159382 GTCATCGGCCTTTTTCCTCAA 58.841 47.619 0.00 0.00 0.00 3.02
1249 1284 4.697352 GCCACTACATGTGTTGATTCTCTT 59.303 41.667 9.11 0.00 44.81 2.85
1259 1294 0.036483 TGCATCGCCACTACATGTGT 60.036 50.000 9.11 1.62 44.81 3.72
1269 1304 3.473923 TCTGAATAATCTGCATCGCCA 57.526 42.857 0.00 0.00 0.00 5.69
1271 1306 5.407691 TCATCTTCTGAATAATCTGCATCGC 59.592 40.000 0.00 0.00 0.00 4.58
1276 1311 6.212235 TCTCGTCATCTTCTGAATAATCTGC 58.788 40.000 0.00 0.00 35.07 4.26
1280 1315 7.278868 GTGGTTTCTCGTCATCTTCTGAATAAT 59.721 37.037 0.00 0.00 35.07 1.28
1281 1316 6.590292 GTGGTTTCTCGTCATCTTCTGAATAA 59.410 38.462 0.00 0.00 35.07 1.40
1282 1317 6.071334 AGTGGTTTCTCGTCATCTTCTGAATA 60.071 38.462 0.00 0.00 35.07 1.75
1296 1331 0.319555 TTGCGGAGAGTGGTTTCTCG 60.320 55.000 0.00 0.00 43.64 4.04
1326 1361 2.357517 CTTGGTGAAGCGGCGTCT 60.358 61.111 16.51 2.98 0.00 4.18
1362 1397 9.227777 GGTTTATCATCATCTGAATCATCATCA 57.772 33.333 0.00 0.00 37.44 3.07
1377 1412 2.694628 GGCAGCCAATGGTTTATCATCA 59.305 45.455 6.55 0.00 0.00 3.07
1386 1421 1.406860 AAAAACGGGCAGCCAATGGT 61.407 50.000 15.19 2.03 0.00 3.55
1419 1454 0.742990 TCGGCATGTCCACGGAATTC 60.743 55.000 0.00 0.00 34.01 2.17
1441 1476 2.632987 AACGCCTTGTTGTTAGGTCT 57.367 45.000 0.00 0.00 40.00 3.85
1452 1487 1.069906 GCACTAGTGTTCAACGCCTTG 60.070 52.381 23.44 0.00 0.00 3.61
1453 1488 1.226746 GCACTAGTGTTCAACGCCTT 58.773 50.000 23.44 0.00 0.00 4.35
1527 1565 5.483685 TTGCCTTCTTAAGAGCTGAACTA 57.516 39.130 15.41 0.00 0.00 2.24
1577 1615 4.286808 TGTCACTTCCATCATCCTCTGAAA 59.713 41.667 0.00 0.00 37.44 2.69
1670 1720 7.698628 AGGACTCTTCTTTTTCTTTTTCTTCG 58.301 34.615 0.00 0.00 0.00 3.79
1677 1727 8.845227 GAAGATGAAGGACTCTTCTTTTTCTTT 58.155 33.333 13.18 0.00 44.50 2.52
1678 1728 8.389779 GAAGATGAAGGACTCTTCTTTTTCTT 57.610 34.615 13.18 11.88 44.50 2.52
1803 1853 4.518970 TGCACCAAAGTAGACCATTTCTTC 59.481 41.667 0.00 0.00 35.55 2.87
1860 1910 3.191162 TGTAAAGCATCTTGACACCATGC 59.809 43.478 9.04 9.04 42.81 4.06
1971 2143 3.932710 GTCATCCTCATTGCTACGAAACA 59.067 43.478 0.00 0.00 0.00 2.83
2021 2193 3.252458 CGGAGGAACAAAAAGACGGAATT 59.748 43.478 0.00 0.00 0.00 2.17
2131 2305 5.238583 AGAATTTTACTCCAGTCGGTGAAG 58.761 41.667 0.00 0.00 0.00 3.02
2198 2372 2.224281 GGTGCCATTCATAGATCGGTGA 60.224 50.000 0.00 0.00 0.00 4.02
2288 2518 8.699130 GGGAATTTTTGGAGATCAGAACAATAT 58.301 33.333 0.00 0.00 0.00 1.28
2296 2526 4.768968 ACTGTGGGAATTTTTGGAGATCAG 59.231 41.667 0.00 0.00 0.00 2.90
2298 2528 5.728637 AACTGTGGGAATTTTTGGAGATC 57.271 39.130 0.00 0.00 0.00 2.75
2304 2534 6.282930 AGTCATCAAACTGTGGGAATTTTTG 58.717 36.000 0.00 0.00 0.00 2.44
2309 2539 7.004086 TCTTTTAGTCATCAAACTGTGGGAAT 58.996 34.615 0.00 0.00 0.00 3.01
2313 2543 7.148340 GGAGATCTTTTAGTCATCAAACTGTGG 60.148 40.741 0.00 0.00 0.00 4.17
2647 2999 5.809001 TCTCTACATCCAGTGCAAAAATCT 58.191 37.500 0.00 0.00 0.00 2.40
2677 3029 6.803366 AATTTACGGAGGGAGTACTAACAT 57.197 37.500 0.00 0.00 0.00 2.71
2685 3037 9.377238 ACTCTTATATTAATTTACGGAGGGAGT 57.623 33.333 13.95 0.00 0.00 3.85
2686 3038 9.640963 CACTCTTATATTAATTTACGGAGGGAG 57.359 37.037 13.95 0.00 0.00 4.30
2687 3039 9.151177 ACACTCTTATATTAATTTACGGAGGGA 57.849 33.333 16.65 0.00 0.00 4.20
2688 3040 9.774413 AACACTCTTATATTAATTTACGGAGGG 57.226 33.333 11.91 11.91 0.00 4.30
2716 3068 9.654663 GTGTTTGGATCACTAAACTAGTAATCT 57.345 33.333 15.75 0.00 44.16 2.40
2718 3070 9.654663 GAGTGTTTGGATCACTAAACTAGTAAT 57.345 33.333 15.75 0.00 44.68 1.89
2719 3071 8.867097 AGAGTGTTTGGATCACTAAACTAGTAA 58.133 33.333 15.75 0.00 44.68 2.24
2720 3072 8.418597 AGAGTGTTTGGATCACTAAACTAGTA 57.581 34.615 15.75 0.00 44.68 1.82
2721 3073 7.304497 AGAGTGTTTGGATCACTAAACTAGT 57.696 36.000 15.75 0.00 44.68 2.57
2722 3074 9.877178 ATAAGAGTGTTTGGATCACTAAACTAG 57.123 33.333 15.75 0.00 44.68 2.57
2739 3091 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
2741 3093 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
2753 3105 9.890352 CGTTTATATAGTACTCCCTCTGTAAAC 57.110 37.037 0.00 6.33 0.00 2.01
2754 3106 9.851686 TCGTTTATATAGTACTCCCTCTGTAAA 57.148 33.333 0.00 0.00 0.00 2.01
2756 3108 9.445878 CATCGTTTATATAGTACTCCCTCTGTA 57.554 37.037 0.00 0.00 0.00 2.74
2757 3109 7.393796 CCATCGTTTATATAGTACTCCCTCTGT 59.606 40.741 0.00 0.00 0.00 3.41
2758 3110 7.610692 TCCATCGTTTATATAGTACTCCCTCTG 59.389 40.741 0.00 0.00 0.00 3.35
2759 3111 7.696981 TCCATCGTTTATATAGTACTCCCTCT 58.303 38.462 0.00 0.00 0.00 3.69
2760 3112 7.934855 TCCATCGTTTATATAGTACTCCCTC 57.065 40.000 0.00 0.00 0.00 4.30
2761 3113 8.896722 AATCCATCGTTTATATAGTACTCCCT 57.103 34.615 0.00 0.00 0.00 4.20
2762 3114 9.583765 GAAATCCATCGTTTATATAGTACTCCC 57.416 37.037 0.00 0.00 0.00 4.30
2763 3115 9.583765 GGAAATCCATCGTTTATATAGTACTCC 57.416 37.037 0.00 0.00 35.64 3.85
2791 3144 3.498774 ATGCAAGTCTCACTTCCACTT 57.501 42.857 0.00 0.00 36.03 3.16
2885 3238 6.708949 GTGGTTCTACTCTGAAATTACCAACA 59.291 38.462 0.00 0.00 0.00 3.33
2984 3540 5.820947 TGAAGTCCCTCACTTGAAGTAAAAC 59.179 40.000 0.00 0.00 46.10 2.43
3099 3655 0.178891 AGGACACACTGGGACTGGAT 60.179 55.000 0.00 0.00 0.00 3.41
3229 3820 7.639113 TTGTCATGTTTAACTTCTTTCCAGT 57.361 32.000 0.00 0.00 0.00 4.00
3380 3971 3.686916 ACTAACTTCCTCACCTTCAGC 57.313 47.619 0.00 0.00 0.00 4.26
3408 3999 5.646360 CACGGGAACAGAAAACCTATATGTT 59.354 40.000 0.00 0.00 36.83 2.71
3409 4000 5.046159 TCACGGGAACAGAAAACCTATATGT 60.046 40.000 0.00 0.00 0.00 2.29
3426 4017 8.458573 AGCATTATTGTTATTATTTCACGGGA 57.541 30.769 0.00 0.00 0.00 5.14
3443 4034 8.863086 AGCCATATGAACACAATTAGCATTATT 58.137 29.630 3.65 0.00 0.00 1.40
3486 4077 8.594881 TTGGTGTAATTTGCACGAATATTTTT 57.405 26.923 10.17 0.00 37.70 1.94
3488 4079 6.811170 CCTTGGTGTAATTTGCACGAATATTT 59.189 34.615 13.59 0.00 37.70 1.40
3549 4140 4.466827 TCTATAAGGTATGTCGCCACTGA 58.533 43.478 0.00 0.00 0.00 3.41
3557 4148 9.257428 AGGGCTAGTTTATCTATAAGGTATGTC 57.743 37.037 0.00 0.00 0.00 3.06
3652 4339 5.104360 ACATACATGCTATCACAACCTCCTT 60.104 40.000 0.00 0.00 0.00 3.36
3655 4342 5.008019 CCAACATACATGCTATCACAACCTC 59.992 44.000 0.00 0.00 0.00 3.85
3668 4355 3.183754 CAGTGCATTGCCAACATACATG 58.816 45.455 6.12 0.00 0.00 3.21
3766 5249 5.388786 CGATGCTGACGGAACATACATTATG 60.389 44.000 0.00 0.00 41.88 1.90
3767 5250 4.686091 CGATGCTGACGGAACATACATTAT 59.314 41.667 0.00 0.00 0.00 1.28
3768 5251 4.048504 CGATGCTGACGGAACATACATTA 58.951 43.478 0.00 0.00 0.00 1.90
3769 5252 2.866156 CGATGCTGACGGAACATACATT 59.134 45.455 0.00 0.00 0.00 2.71
3858 5656 8.100164 GGAAAGGAATTAATTTTGGGTGAATGA 58.900 33.333 1.43 0.00 0.00 2.57
3910 5714 8.717821 CGATGAAGTTCAAAACTAAGTGGATTA 58.282 33.333 10.14 0.00 41.91 1.75
3911 5715 7.444183 TCGATGAAGTTCAAAACTAAGTGGATT 59.556 33.333 10.14 0.00 41.91 3.01
3922 5734 8.322906 AGAACATATGTCGATGAAGTTCAAAA 57.677 30.769 10.14 0.00 37.07 2.44
3985 5800 3.422603 GCGTACAACAACCAACAGTATCG 60.423 47.826 0.00 0.00 0.00 2.92
4095 5910 8.335356 CGACCGAACATTAGATAACATGAAATT 58.665 33.333 0.00 0.00 0.00 1.82
4096 5911 7.709182 TCGACCGAACATTAGATAACATGAAAT 59.291 33.333 0.00 0.00 0.00 2.17
4116 5956 4.904154 GTCAAACTGAAAAGAAATCGACCG 59.096 41.667 0.00 0.00 0.00 4.79
4232 6072 2.312741 AGGGATGGGAAAAGAGCATTGA 59.687 45.455 0.00 0.00 0.00 2.57
4476 6361 8.762481 AAAAGTAGAAAACAAAGACCTGGTAT 57.238 30.769 0.00 0.00 0.00 2.73
4540 6433 7.658179 TTTACTCATGACAAACTTCAGCTAG 57.342 36.000 0.00 0.00 0.00 3.42
4640 6533 5.339611 GCGTGTCATTGACAAACTAAATGTC 59.660 40.000 20.57 4.17 44.49 3.06
4663 6556 6.576313 CACATAATAATGCTGACGATTTCTGC 59.424 38.462 0.00 0.00 46.71 4.26
4742 6690 7.828717 TCATTCAACTGTAATACCATCACACAT 59.171 33.333 0.00 0.00 0.00 3.21
4770 6718 3.575687 AGAAGGCTCCCATCTTTTGTTTG 59.424 43.478 0.00 0.00 0.00 2.93
4813 6761 1.600023 TACCTGTTTGTTTGCTCGGG 58.400 50.000 0.00 0.00 0.00 5.14
4834 6782 2.381752 TTCCTCAGGAGTGACAGACA 57.618 50.000 0.00 0.00 31.21 3.41
4868 6819 8.354711 AGAGTCAATAAGAGTGATGTACTGAA 57.645 34.615 0.00 0.00 40.53 3.02
4872 6823 7.219154 CGTTGAGAGTCAATAAGAGTGATGTAC 59.781 40.741 0.00 0.00 38.79 2.90
4879 6830 6.274157 ACATCGTTGAGAGTCAATAAGAGT 57.726 37.500 0.00 0.00 38.79 3.24
4913 6864 4.018870 TGGTTACAGATATGGCAACCTGAA 60.019 41.667 20.30 4.82 39.51 3.02
4946 6898 3.181487 GGGAATCATGTGATTTTGGGACG 60.181 47.826 9.42 0.00 44.14 4.79
5039 6991 5.712446 TGCACCCACATTAAACTAGCATAAA 59.288 36.000 0.00 0.00 0.00 1.40
5065 7017 6.633856 ACAAGGATAAATTTGAGGCAATCAC 58.366 36.000 0.00 0.00 37.77 3.06
5072 7024 8.678199 GTTTAGAGGACAAGGATAAATTTGAGG 58.322 37.037 0.00 0.00 0.00 3.86
5084 7036 7.878127 TGATAGTCAAAAGTTTAGAGGACAAGG 59.122 37.037 10.38 0.00 0.00 3.61
5103 7055 7.148171 CCTGGAGAAAAGAACCAAATGATAGTC 60.148 40.741 0.00 0.00 33.14 2.59
5104 7056 6.660949 CCTGGAGAAAAGAACCAAATGATAGT 59.339 38.462 0.00 0.00 33.14 2.12
5105 7057 6.405176 GCCTGGAGAAAAGAACCAAATGATAG 60.405 42.308 0.00 0.00 33.14 2.08
5145 7098 3.258228 GCTCTCACTAAGTCTGCTTTCC 58.742 50.000 0.00 0.00 36.22 3.13
5159 7136 2.158645 GCTTTCCTTTCTTCGCTCTCAC 59.841 50.000 0.00 0.00 0.00 3.51
5160 7137 2.417719 GCTTTCCTTTCTTCGCTCTCA 58.582 47.619 0.00 0.00 0.00 3.27
5189 7166 1.833630 TCGCTTCCCATCTTCATCACT 59.166 47.619 0.00 0.00 0.00 3.41
5275 7258 9.935241 GATTTATGAGATTGCCTTCACTCTATA 57.065 33.333 0.00 0.00 33.09 1.31
5284 7267 6.830324 TGCAAGTAGATTTATGAGATTGCCTT 59.170 34.615 0.00 0.00 40.71 4.35
5287 7270 6.261826 ACCTGCAAGTAGATTTATGAGATTGC 59.738 38.462 0.00 0.00 41.54 3.56
5302 7285 5.755409 TCTTAATCTCCAACCTGCAAGTA 57.245 39.130 0.00 0.00 0.00 2.24
5319 7307 8.762645 TCTTGGCTTCAATCTTAGAGATCTTAA 58.237 33.333 0.00 0.00 32.89 1.85
5339 7327 7.500559 AGTGATATCTGTTTCCTTTATCTTGGC 59.499 37.037 3.98 0.00 0.00 4.52
5356 7344 6.485313 CCTCTCTGTTCGTCTTAGTGATATCT 59.515 42.308 3.98 0.00 0.00 1.98
5363 7351 4.023726 ACTCCTCTCTGTTCGTCTTAGT 57.976 45.455 0.00 0.00 0.00 2.24
5419 7407 6.127054 CCACAGTGATTCTAGGATCAAGGTAA 60.127 42.308 15.59 0.00 37.75 2.85
5546 7534 8.511748 AGGGAATTGTCTCTTGTATATATGGT 57.488 34.615 0.00 0.00 25.56 3.55
5555 7543 4.982241 TCTTGAGGGAATTGTCTCTTGT 57.018 40.909 6.30 0.00 33.37 3.16
5621 7609 9.871238 ACGGTTTATATGGCTTTATGTCTATAG 57.129 33.333 0.00 0.00 0.00 1.31
5622 7610 9.865321 GACGGTTTATATGGCTTTATGTCTATA 57.135 33.333 0.00 0.00 0.00 1.31
5623 7611 7.822822 GGACGGTTTATATGGCTTTATGTCTAT 59.177 37.037 0.00 0.00 0.00 1.98
5624 7612 7.015877 AGGACGGTTTATATGGCTTTATGTCTA 59.984 37.037 0.00 0.00 0.00 2.59
5646 7634 7.982224 ACAACGCTTAATTTTATAGGAAGGAC 58.018 34.615 0.00 0.00 0.00 3.85
5687 7763 7.762615 TCTGTTAAGGACTACCAAATGATAACG 59.237 37.037 0.00 0.00 38.94 3.18
5780 7868 0.911769 ATCTGAAATCTGGGTCGGCA 59.088 50.000 0.00 0.00 0.00 5.69
5789 7877 5.372066 AGGCATCCCTTAGAATCTGAAATCT 59.628 40.000 0.00 2.51 38.74 2.40
5865 7953 3.181470 GCTCTTTCTTTCCTAGCTCCGAT 60.181 47.826 0.00 0.00 0.00 4.18
5866 7954 2.166664 GCTCTTTCTTTCCTAGCTCCGA 59.833 50.000 0.00 0.00 0.00 4.55
5867 7955 2.167487 AGCTCTTTCTTTCCTAGCTCCG 59.833 50.000 0.00 0.00 39.23 4.63
5888 7976 2.429610 CGTAGATTCCTTCTTTCGGGGA 59.570 50.000 0.00 0.00 35.79 4.81
5892 7980 4.106029 TGACCGTAGATTCCTTCTTTCG 57.894 45.455 0.00 0.00 35.79 3.46
5906 7994 2.426024 GCCTACACAGAGAATGACCGTA 59.574 50.000 0.00 0.00 0.00 4.02
5907 7995 1.204941 GCCTACACAGAGAATGACCGT 59.795 52.381 0.00 0.00 0.00 4.83
5908 7996 1.478510 AGCCTACACAGAGAATGACCG 59.521 52.381 0.00 0.00 0.00 4.79
5920 8008 1.528129 AGCAAAAGCAGAGCCTACAC 58.472 50.000 0.00 0.00 0.00 2.90
5938 8026 2.957491 TGGCAAACACAGGACAAAAG 57.043 45.000 0.00 0.00 0.00 2.27
5941 8029 2.363306 AGATGGCAAACACAGGACAA 57.637 45.000 0.00 0.00 0.00 3.18
5942 8030 2.363306 AAGATGGCAAACACAGGACA 57.637 45.000 0.00 0.00 0.00 4.02
5943 8031 2.350772 CGAAAGATGGCAAACACAGGAC 60.351 50.000 0.00 0.00 0.00 3.85
5953 8041 1.473677 CAAGGCATTCGAAAGATGGCA 59.526 47.619 21.37 0.00 42.33 4.92
5966 8054 2.008268 GCCAAGCGCATACAAGGCAT 62.008 55.000 11.47 0.00 41.63 4.40
6001 8089 7.869937 CACACCGTCATCTATATTTGAGATTCT 59.130 37.037 0.00 0.00 31.05 2.40
6017 8105 1.855213 GCACATGCACACACCGTCAT 61.855 55.000 0.00 0.00 41.59 3.06
6035 8125 2.160822 TCAGTCAGCAGTTCTCAAGC 57.839 50.000 0.00 0.00 0.00 4.01
6059 8149 5.651576 TGCACATTGTAGCATTTCTTCCATA 59.348 36.000 9.03 0.00 35.51 2.74
6085 8175 7.990886 ACAACCAGTGAAGTACTCTATCAAAAA 59.009 33.333 0.00 0.00 37.60 1.94
6118 8208 8.594881 AGAATGCGTATAAAATACAGGAAGAG 57.405 34.615 0.00 0.00 0.00 2.85
6163 8255 3.788227 ACAGGCTACCAAATTCAGTCA 57.212 42.857 0.00 0.00 0.00 3.41
6178 8270 4.759516 TTGAAGTTTCCGAAATACAGGC 57.240 40.909 0.00 0.00 0.00 4.85
6179 8271 7.480542 CGTAATTTGAAGTTTCCGAAATACAGG 59.519 37.037 0.00 0.00 0.00 4.00
6180 8272 7.480542 CCGTAATTTGAAGTTTCCGAAATACAG 59.519 37.037 0.00 0.00 0.00 2.74
6181 8273 7.041235 ACCGTAATTTGAAGTTTCCGAAATACA 60.041 33.333 0.00 0.00 0.00 2.29
6182 8274 7.300320 ACCGTAATTTGAAGTTTCCGAAATAC 58.700 34.615 0.00 0.00 0.00 1.89
6183 8275 7.437793 ACCGTAATTTGAAGTTTCCGAAATA 57.562 32.000 0.00 0.00 0.00 1.40
6188 8280 3.666797 GCAACCGTAATTTGAAGTTTCCG 59.333 43.478 0.00 0.00 0.00 4.30
6190 8282 3.666797 CCGCAACCGTAATTTGAAGTTTC 59.333 43.478 0.00 0.00 0.00 2.78
6205 8297 2.358193 AAAAACGCTTCCCCGCAACC 62.358 55.000 0.00 0.00 0.00 3.77
6210 8302 1.807742 TCATGTAAAAACGCTTCCCCG 59.192 47.619 0.00 0.00 0.00 5.73
6211 8303 3.181490 GGATCATGTAAAAACGCTTCCCC 60.181 47.826 0.00 0.00 0.00 4.81
6227 8319 2.356535 GGGAGCTCACAGTTTGGATCAT 60.357 50.000 17.19 0.00 0.00 2.45
6239 8331 0.259938 ATTTGGGGATGGGAGCTCAC 59.740 55.000 17.19 13.72 0.00 3.51
6242 8334 2.431997 TCATATTTGGGGATGGGAGCT 58.568 47.619 0.00 0.00 0.00 4.09
6257 8349 3.869912 GCCGACATAGCCACCATTCATAT 60.870 47.826 0.00 0.00 0.00 1.78
6269 8361 2.027751 GACCGAGGCCGACATAGC 59.972 66.667 0.00 0.00 38.22 2.97
6315 8407 2.879907 CTGGTGCGGGCAAGATTG 59.120 61.111 0.00 0.00 0.00 2.67
6318 8410 4.704833 GAGCTGGTGCGGGCAAGA 62.705 66.667 0.00 0.00 45.42 3.02
6319 8411 4.711949 AGAGCTGGTGCGGGCAAG 62.712 66.667 0.00 0.00 45.42 4.01
6328 8420 3.768922 GAGGCGAGCAGAGCTGGT 61.769 66.667 1.26 1.26 39.88 4.00
6350 8465 2.315176 GAGAATGGAGGAGAGCTAGCA 58.685 52.381 18.83 0.00 0.00 3.49
6351 8466 1.618343 GGAGAATGGAGGAGAGCTAGC 59.382 57.143 6.62 6.62 0.00 3.42
6352 8467 1.885887 CGGAGAATGGAGGAGAGCTAG 59.114 57.143 0.00 0.00 0.00 3.42
6353 8468 1.479573 CCGGAGAATGGAGGAGAGCTA 60.480 57.143 0.00 0.00 0.00 3.32
6355 8470 1.745264 CCGGAGAATGGAGGAGAGC 59.255 63.158 0.00 0.00 0.00 4.09
6356 8471 1.745264 GCCGGAGAATGGAGGAGAG 59.255 63.158 5.05 0.00 0.00 3.20
6476 8600 3.050275 GGCAGTCTTGGCGACCAC 61.050 66.667 0.00 0.00 43.91 4.16
6504 8652 1.337817 GCGTCAGCTGTCTACACGTG 61.338 60.000 21.38 15.48 41.01 4.49
6613 8761 4.323477 GCAGTGGGTACGTGGCCA 62.323 66.667 0.00 0.00 0.00 5.36
6658 8806 3.706373 GAGGCCGCACTTCCTCCA 61.706 66.667 0.00 0.00 42.30 3.86
6660 8808 4.821589 CCGAGGCCGCACTTCCTC 62.822 72.222 7.44 0.00 44.14 3.71
6680 8828 2.319890 TTTAGGAATCTCCGCCGGCC 62.320 60.000 23.46 4.12 42.75 6.13
6681 8829 0.250338 ATTTAGGAATCTCCGCCGGC 60.250 55.000 19.07 19.07 42.75 6.13
6682 8830 3.396260 TTATTTAGGAATCTCCGCCGG 57.604 47.619 0.00 0.00 42.75 6.13
6683 8831 5.065474 TGTTTTTATTTAGGAATCTCCGCCG 59.935 40.000 0.00 0.00 42.75 6.46
6684 8832 6.445357 TGTTTTTATTTAGGAATCTCCGCC 57.555 37.500 0.00 0.00 42.75 6.13
6685 8833 7.435192 CCAATGTTTTTATTTAGGAATCTCCGC 59.565 37.037 0.00 0.00 42.75 5.54
6686 8834 7.920682 CCCAATGTTTTTATTTAGGAATCTCCG 59.079 37.037 0.00 0.00 42.75 4.63
6687 8835 8.204160 CCCCAATGTTTTTATTTAGGAATCTCC 58.796 37.037 0.00 0.00 36.58 3.71
6688 8836 7.710907 GCCCCAATGTTTTTATTTAGGAATCTC 59.289 37.037 0.00 0.00 0.00 2.75
6689 8837 7.181845 TGCCCCAATGTTTTTATTTAGGAATCT 59.818 33.333 0.00 0.00 0.00 2.40
6690 8838 7.334858 TGCCCCAATGTTTTTATTTAGGAATC 58.665 34.615 0.00 0.00 0.00 2.52
6691 8839 7.264294 TGCCCCAATGTTTTTATTTAGGAAT 57.736 32.000 0.00 0.00 0.00 3.01
6692 8840 6.688073 TGCCCCAATGTTTTTATTTAGGAA 57.312 33.333 0.00 0.00 0.00 3.36
6693 8841 6.671779 AGATGCCCCAATGTTTTTATTTAGGA 59.328 34.615 0.00 0.00 0.00 2.94
6694 8842 6.888105 AGATGCCCCAATGTTTTTATTTAGG 58.112 36.000 0.00 0.00 0.00 2.69
6695 8843 8.040132 TGAAGATGCCCCAATGTTTTTATTTAG 58.960 33.333 0.00 0.00 0.00 1.85
6696 8844 7.911651 TGAAGATGCCCCAATGTTTTTATTTA 58.088 30.769 0.00 0.00 0.00 1.40
6697 8845 6.777782 TGAAGATGCCCCAATGTTTTTATTT 58.222 32.000 0.00 0.00 0.00 1.40
6698 8846 6.371595 TGAAGATGCCCCAATGTTTTTATT 57.628 33.333 0.00 0.00 0.00 1.40
6699 8847 6.371595 TTGAAGATGCCCCAATGTTTTTAT 57.628 33.333 0.00 0.00 0.00 1.40
6700 8848 5.815233 TTGAAGATGCCCCAATGTTTTTA 57.185 34.783 0.00 0.00 0.00 1.52
6701 8849 4.703379 TTGAAGATGCCCCAATGTTTTT 57.297 36.364 0.00 0.00 0.00 1.94
6702 8850 4.703379 TTTGAAGATGCCCCAATGTTTT 57.297 36.364 0.00 0.00 0.00 2.43
6703 8851 4.388485 GTTTTGAAGATGCCCCAATGTTT 58.612 39.130 0.00 0.00 0.00 2.83
6704 8852 3.554752 CGTTTTGAAGATGCCCCAATGTT 60.555 43.478 0.00 0.00 0.00 2.71
6705 8853 2.029110 CGTTTTGAAGATGCCCCAATGT 60.029 45.455 0.00 0.00 0.00 2.71
6706 8854 2.609350 CGTTTTGAAGATGCCCCAATG 58.391 47.619 0.00 0.00 0.00 2.82
6707 8855 1.550072 CCGTTTTGAAGATGCCCCAAT 59.450 47.619 0.00 0.00 0.00 3.16
6708 8856 0.965439 CCGTTTTGAAGATGCCCCAA 59.035 50.000 0.00 0.00 0.00 4.12
6709 8857 0.111446 TCCGTTTTGAAGATGCCCCA 59.889 50.000 0.00 0.00 0.00 4.96
6710 8858 0.526211 GTCCGTTTTGAAGATGCCCC 59.474 55.000 0.00 0.00 0.00 5.80
6711 8859 0.526211 GGTCCGTTTTGAAGATGCCC 59.474 55.000 0.00 0.00 0.00 5.36
6712 8860 1.534729 AGGTCCGTTTTGAAGATGCC 58.465 50.000 0.00 0.00 0.00 4.40
6713 8861 2.552315 TGAAGGTCCGTTTTGAAGATGC 59.448 45.455 0.00 0.00 0.00 3.91
6714 8862 4.829064 TTGAAGGTCCGTTTTGAAGATG 57.171 40.909 0.00 0.00 0.00 2.90
6715 8863 4.037565 GGTTTGAAGGTCCGTTTTGAAGAT 59.962 41.667 0.00 0.00 0.00 2.40
6716 8864 3.379057 GGTTTGAAGGTCCGTTTTGAAGA 59.621 43.478 0.00 0.00 0.00 2.87
6717 8865 3.702330 GGTTTGAAGGTCCGTTTTGAAG 58.298 45.455 0.00 0.00 0.00 3.02
6718 8866 2.097791 CGGTTTGAAGGTCCGTTTTGAA 59.902 45.455 0.00 0.00 39.51 2.69
6719 8867 1.671845 CGGTTTGAAGGTCCGTTTTGA 59.328 47.619 0.00 0.00 39.51 2.69
6720 8868 1.862411 GCGGTTTGAAGGTCCGTTTTG 60.862 52.381 0.00 0.00 45.11 2.44
6721 8869 0.382873 GCGGTTTGAAGGTCCGTTTT 59.617 50.000 0.00 0.00 45.11 2.43
6722 8870 0.464916 AGCGGTTTGAAGGTCCGTTT 60.465 50.000 0.00 0.00 45.11 3.60
6723 8871 0.883370 GAGCGGTTTGAAGGTCCGTT 60.883 55.000 0.00 0.00 45.11 4.44
6724 8872 1.301479 GAGCGGTTTGAAGGTCCGT 60.301 57.895 0.00 0.00 45.11 4.69
6725 8873 2.380410 CGAGCGGTTTGAAGGTCCG 61.380 63.158 0.00 0.00 45.94 4.79
6726 8874 2.677979 GCGAGCGGTTTGAAGGTCC 61.678 63.158 0.00 0.00 0.00 4.46
6727 8875 1.298859 ATGCGAGCGGTTTGAAGGTC 61.299 55.000 0.00 0.00 0.00 3.85
6728 8876 0.036765 TATGCGAGCGGTTTGAAGGT 60.037 50.000 0.00 0.00 0.00 3.50
6729 8877 1.299541 ATATGCGAGCGGTTTGAAGG 58.700 50.000 0.00 0.00 0.00 3.46
6730 8878 4.664139 CGAATATATGCGAGCGGTTTGAAG 60.664 45.833 7.37 0.00 0.00 3.02
6731 8879 3.183574 CGAATATATGCGAGCGGTTTGAA 59.816 43.478 7.37 0.00 0.00 2.69
6732 8880 2.729360 CGAATATATGCGAGCGGTTTGA 59.271 45.455 7.37 0.00 0.00 2.69
6733 8881 2.729360 TCGAATATATGCGAGCGGTTTG 59.271 45.455 11.95 0.00 32.13 2.93
6734 8882 3.021269 TCGAATATATGCGAGCGGTTT 57.979 42.857 11.95 0.00 32.13 3.27
6735 8883 2.717580 TCGAATATATGCGAGCGGTT 57.282 45.000 11.95 0.00 32.13 4.44
6736 8884 2.030185 AGTTCGAATATATGCGAGCGGT 60.030 45.455 20.35 5.33 41.60 5.68
6737 8885 2.342651 CAGTTCGAATATATGCGAGCGG 59.657 50.000 20.35 17.16 41.60 5.52
6738 8886 2.222376 GCAGTTCGAATATATGCGAGCG 60.222 50.000 20.35 16.56 41.60 5.03
6739 8887 3.360775 GCAGTTCGAATATATGCGAGC 57.639 47.619 19.31 19.31 37.85 5.03
6751 8899 1.019278 GGATGGCTTTCGCAGTTCGA 61.019 55.000 0.00 0.00 46.88 3.71
6752 8900 1.298157 TGGATGGCTTTCGCAGTTCG 61.298 55.000 0.00 0.00 38.10 3.95
6753 8901 0.881118 TTGGATGGCTTTCGCAGTTC 59.119 50.000 0.00 0.00 38.10 3.01
6754 8902 1.549203 ATTGGATGGCTTTCGCAGTT 58.451 45.000 0.00 0.00 38.10 3.16
6755 8903 2.092968 TCTATTGGATGGCTTTCGCAGT 60.093 45.455 0.00 0.00 38.10 4.40
6756 8904 2.564771 TCTATTGGATGGCTTTCGCAG 58.435 47.619 0.00 0.00 38.10 5.18
6757 8905 2.708216 TCTATTGGATGGCTTTCGCA 57.292 45.000 0.00 0.00 38.10 5.10
6758 8906 3.817647 AGATTCTATTGGATGGCTTTCGC 59.182 43.478 0.00 0.00 0.00 4.70
6759 8907 4.818546 ACAGATTCTATTGGATGGCTTTCG 59.181 41.667 0.00 0.00 0.00 3.46
6760 8908 7.148507 CGATACAGATTCTATTGGATGGCTTTC 60.149 40.741 0.00 0.00 0.00 2.62
6761 8909 6.652481 CGATACAGATTCTATTGGATGGCTTT 59.348 38.462 0.00 0.00 0.00 3.51
6762 8910 6.014242 TCGATACAGATTCTATTGGATGGCTT 60.014 38.462 0.00 0.00 0.00 4.35
6763 8911 5.481824 TCGATACAGATTCTATTGGATGGCT 59.518 40.000 0.00 0.00 0.00 4.75
6764 8912 5.724328 TCGATACAGATTCTATTGGATGGC 58.276 41.667 0.00 0.00 0.00 4.40
6765 8913 7.705752 CAGATCGATACAGATTCTATTGGATGG 59.294 40.741 0.00 0.00 0.00 3.51
6766 8914 8.249638 ACAGATCGATACAGATTCTATTGGATG 58.750 37.037 0.00 0.00 0.00 3.51
6767 8915 8.359875 ACAGATCGATACAGATTCTATTGGAT 57.640 34.615 0.00 0.00 0.00 3.41
6768 8916 7.767250 ACAGATCGATACAGATTCTATTGGA 57.233 36.000 0.00 0.00 0.00 3.53
6786 8934 2.878743 CCACATCGCTCGACAGATC 58.121 57.895 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.