Multiple sequence alignment - TraesCS2A01G497000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G497000 chr2A 100.000 4019 0 0 1 4019 727955822 727959840 0.000000e+00 7422
1 TraesCS2A01G497000 chr2D 93.455 2460 119 17 773 3226 593218444 593220867 0.000000e+00 3613
2 TraesCS2A01G497000 chr2D 91.656 755 57 5 3227 3977 593221522 593222274 0.000000e+00 1040
3 TraesCS2A01G497000 chr2D 83.112 752 118 8 3269 4013 307749096 307748347 0.000000e+00 676
4 TraesCS2A01G497000 chr2D 84.589 292 29 11 276 564 593216983 593217261 3.960000e-70 276
5 TraesCS2A01G497000 chr2B 92.473 2471 138 19 704 3154 719472046 719474488 0.000000e+00 3489
6 TraesCS2A01G497000 chr2B 91.235 753 60 6 3227 3977 719492666 719493414 0.000000e+00 1020
7 TraesCS2A01G497000 chr2B 96.203 79 3 0 3151 3229 719491935 719492013 3.260000e-26 130
8 TraesCS2A01G497000 chr3D 85.106 752 97 15 3269 4013 331131777 331131034 0.000000e+00 754
9 TraesCS2A01G497000 chr3D 84.246 749 112 5 3269 4013 44770407 44771153 0.000000e+00 725
10 TraesCS2A01G497000 chr3B 84.197 753 104 15 3269 4013 430509187 430508442 0.000000e+00 717
11 TraesCS2A01G497000 chr6D 84.316 746 97 15 3280 4013 355886643 355887380 0.000000e+00 712
12 TraesCS2A01G497000 chr6D 74.792 1202 281 17 1827 3017 444137561 444136371 4.600000e-144 521
13 TraesCS2A01G497000 chr6D 75.000 356 66 19 1088 1433 444138288 444137946 4.190000e-30 143
14 TraesCS2A01G497000 chr7A 83.820 754 109 12 3269 4013 455607892 455607143 0.000000e+00 704
15 TraesCS2A01G497000 chr7A 85.139 397 36 4 1777 2173 32953520 32953147 6.300000e-103 385
16 TraesCS2A01G497000 chr4D 83.671 741 103 14 3285 4013 466808779 466808045 0.000000e+00 682
17 TraesCS2A01G497000 chr4A 88.121 564 62 4 1777 2340 692656908 692656350 0.000000e+00 665
18 TraesCS2A01G497000 chr6A 74.979 1203 277 19 1827 3017 591733159 591731969 2.130000e-147 532
19 TraesCS2A01G497000 chr6B 74.293 1202 287 17 1827 3017 668777852 668776662 4.670000e-134 488
20 TraesCS2A01G497000 chr6B 74.859 354 70 16 1088 1433 668778579 668778237 4.190000e-30 143
21 TraesCS2A01G497000 chr5B 86.824 296 27 7 277 564 440275634 440275343 1.800000e-83 320
22 TraesCS2A01G497000 chr5A 86.496 274 25 7 294 562 473638159 473637893 1.410000e-74 291
23 TraesCS2A01G497000 chr7D 84.564 149 23 0 1526 1674 32716773 32716625 9.000000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G497000 chr2A 727955822 727959840 4018 False 7422.0 7422 100.000 1 4019 1 chr2A.!!$F1 4018
1 TraesCS2A01G497000 chr2D 593216983 593222274 5291 False 1643.0 3613 89.900 276 3977 3 chr2D.!!$F1 3701
2 TraesCS2A01G497000 chr2D 307748347 307749096 749 True 676.0 676 83.112 3269 4013 1 chr2D.!!$R1 744
3 TraesCS2A01G497000 chr2B 719472046 719474488 2442 False 3489.0 3489 92.473 704 3154 1 chr2B.!!$F1 2450
4 TraesCS2A01G497000 chr2B 719491935 719493414 1479 False 575.0 1020 93.719 3151 3977 2 chr2B.!!$F2 826
5 TraesCS2A01G497000 chr3D 331131034 331131777 743 True 754.0 754 85.106 3269 4013 1 chr3D.!!$R1 744
6 TraesCS2A01G497000 chr3D 44770407 44771153 746 False 725.0 725 84.246 3269 4013 1 chr3D.!!$F1 744
7 TraesCS2A01G497000 chr3B 430508442 430509187 745 True 717.0 717 84.197 3269 4013 1 chr3B.!!$R1 744
8 TraesCS2A01G497000 chr6D 355886643 355887380 737 False 712.0 712 84.316 3280 4013 1 chr6D.!!$F1 733
9 TraesCS2A01G497000 chr6D 444136371 444138288 1917 True 332.0 521 74.896 1088 3017 2 chr6D.!!$R1 1929
10 TraesCS2A01G497000 chr7A 455607143 455607892 749 True 704.0 704 83.820 3269 4013 1 chr7A.!!$R2 744
11 TraesCS2A01G497000 chr4D 466808045 466808779 734 True 682.0 682 83.671 3285 4013 1 chr4D.!!$R1 728
12 TraesCS2A01G497000 chr4A 692656350 692656908 558 True 665.0 665 88.121 1777 2340 1 chr4A.!!$R1 563
13 TraesCS2A01G497000 chr6A 591731969 591733159 1190 True 532.0 532 74.979 1827 3017 1 chr6A.!!$R1 1190
14 TraesCS2A01G497000 chr6B 668776662 668778579 1917 True 315.5 488 74.576 1088 3017 2 chr6B.!!$R1 1929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 280 0.037590 TTATGCTTGAACGTGCCCCT 59.962 50.0 0.00 0.0 0.00 4.79 F
283 284 0.104120 GCTTGAACGTGCCCCTTTTT 59.896 50.0 0.00 0.0 0.00 1.94 F
573 575 0.105039 CGGAGTGAGCATTAGGGTCC 59.895 60.0 0.00 0.0 43.44 4.46 F
613 691 0.108585 AAGAACGCAGCTCTCCCAAA 59.891 50.0 0.00 0.0 28.07 3.28 F
855 1890 0.109723 TGGGTCGTTCCTTCCCTTTG 59.890 55.0 0.00 0.0 41.58 2.77 F
930 1966 0.179000 ACACCCAGAATCTCATCGCC 59.821 55.0 0.00 0.0 0.00 5.54 F
1630 2687 0.248094 CGACGCGTCTGAGCTTATCA 60.248 55.0 33.94 0.0 36.21 2.15 F
1836 2905 0.252103 TGGCCTTCTCCTACGAGGTT 60.252 55.0 3.32 0.0 36.53 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1512 2569 0.036732 ACACGTAGTACTCCCCGTCA 59.963 55.000 0.00 0.0 41.61 4.35 R
1530 2587 0.685097 TGAGCCTGAGGTGGTTGTAC 59.315 55.000 0.00 0.0 0.00 2.90 R
1770 2839 1.296715 GACCACAGAAGGGTCGCAT 59.703 57.895 0.00 0.0 44.80 4.73 R
2334 3406 2.434359 GGGAACACGAAGGAGGCG 60.434 66.667 0.00 0.0 0.00 5.52 R
2856 3928 2.943345 GCTGTGCAGGTCGAACACG 61.943 63.158 1.87 0.0 37.11 4.49 R
2966 4038 1.355066 GACGAAGCAGAAAGAGGCGG 61.355 60.000 0.00 0.0 34.54 6.13 R
2990 4062 0.390472 CTTCACGGTGGAGAAGAGGC 60.390 60.000 11.12 0.0 41.63 4.70 R
3577 5311 0.486879 TTGGGTGCCTTGGAAATCCT 59.513 50.000 0.44 0.0 36.82 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.771525 ACTAGTGGGTCGCCTCCT 59.228 61.111 0.00 0.00 0.00 3.69
18 19 1.078710 ACTAGTGGGTCGCCTCCTT 59.921 57.895 0.00 0.00 0.00 3.36
20 21 0.108138 CTAGTGGGTCGCCTCCTTTG 60.108 60.000 0.00 0.00 0.00 2.77
21 22 0.834687 TAGTGGGTCGCCTCCTTTGT 60.835 55.000 0.00 0.00 0.00 2.83
22 23 1.966451 GTGGGTCGCCTCCTTTGTG 60.966 63.158 0.00 0.00 0.00 3.33
23 24 2.359975 GGGTCGCCTCCTTTGTGG 60.360 66.667 0.00 0.00 37.10 4.17
24 25 3.056328 GGTCGCCTCCTTTGTGGC 61.056 66.667 0.00 0.00 45.63 5.01
25 26 2.032681 GTCGCCTCCTTTGTGGCT 59.967 61.111 0.00 0.00 46.64 4.75
26 27 2.035442 GTCGCCTCCTTTGTGGCTC 61.035 63.158 0.00 0.00 46.64 4.70
27 28 2.032528 CGCCTCCTTTGTGGCTCA 59.967 61.111 0.00 0.00 46.64 4.26
28 29 1.377725 CGCCTCCTTTGTGGCTCAT 60.378 57.895 0.00 0.00 46.64 2.90
29 30 0.107703 CGCCTCCTTTGTGGCTCATA 60.108 55.000 0.00 0.00 46.64 2.15
30 31 1.673168 GCCTCCTTTGTGGCTCATAG 58.327 55.000 0.00 0.76 45.62 2.23
31 32 1.673168 CCTCCTTTGTGGCTCATAGC 58.327 55.000 2.06 0.00 41.46 2.97
32 33 1.065199 CCTCCTTTGTGGCTCATAGCA 60.065 52.381 0.78 0.00 44.75 3.49
33 34 2.422519 CCTCCTTTGTGGCTCATAGCAT 60.423 50.000 0.78 0.00 44.75 3.79
34 35 3.181451 CCTCCTTTGTGGCTCATAGCATA 60.181 47.826 0.78 0.00 44.75 3.14
35 36 4.506271 CCTCCTTTGTGGCTCATAGCATAT 60.506 45.833 0.78 0.00 44.75 1.78
36 37 5.280164 CCTCCTTTGTGGCTCATAGCATATA 60.280 44.000 0.78 0.00 44.75 0.86
37 38 6.378661 TCCTTTGTGGCTCATAGCATATAT 57.621 37.500 0.78 0.00 44.75 0.86
38 39 6.175471 TCCTTTGTGGCTCATAGCATATATG 58.825 40.000 8.45 8.45 44.75 1.78
39 40 5.942236 CCTTTGTGGCTCATAGCATATATGT 59.058 40.000 14.14 4.18 44.75 2.29
40 41 7.038373 TCCTTTGTGGCTCATAGCATATATGTA 60.038 37.037 14.14 6.12 44.75 2.29
41 42 7.772292 CCTTTGTGGCTCATAGCATATATGTAT 59.228 37.037 14.14 7.95 44.75 2.29
42 43 8.722480 TTTGTGGCTCATAGCATATATGTATC 57.278 34.615 14.14 0.00 44.75 2.24
43 44 7.422465 TGTGGCTCATAGCATATATGTATCA 57.578 36.000 14.14 3.57 44.75 2.15
44 45 8.026396 TGTGGCTCATAGCATATATGTATCAT 57.974 34.615 14.14 0.63 44.75 2.45
45 46 8.146412 TGTGGCTCATAGCATATATGTATCATC 58.854 37.037 14.14 0.00 44.75 2.92
46 47 8.366401 GTGGCTCATAGCATATATGTATCATCT 58.634 37.037 14.14 4.37 44.75 2.90
47 48 8.931568 TGGCTCATAGCATATATGTATCATCTT 58.068 33.333 14.14 0.00 44.75 2.40
62 63 8.226819 TGTATCATCTTAGATGTTTCGACTCT 57.773 34.615 20.09 0.00 0.00 3.24
63 64 8.687242 TGTATCATCTTAGATGTTTCGACTCTT 58.313 33.333 20.09 0.00 0.00 2.85
64 65 8.963130 GTATCATCTTAGATGTTTCGACTCTTG 58.037 37.037 20.09 0.00 0.00 3.02
65 66 7.158099 TCATCTTAGATGTTTCGACTCTTGA 57.842 36.000 20.09 0.00 0.00 3.02
66 67 7.254137 TCATCTTAGATGTTTCGACTCTTGAG 58.746 38.462 20.09 0.00 0.00 3.02
67 68 6.576662 TCTTAGATGTTTCGACTCTTGAGT 57.423 37.500 2.59 2.59 0.00 3.41
68 69 6.382608 TCTTAGATGTTTCGACTCTTGAGTG 58.617 40.000 8.11 1.63 0.00 3.51
69 70 3.321497 AGATGTTTCGACTCTTGAGTGC 58.679 45.455 8.11 0.01 0.00 4.40
70 71 1.865865 TGTTTCGACTCTTGAGTGCC 58.134 50.000 8.11 0.00 0.00 5.01
71 72 1.412710 TGTTTCGACTCTTGAGTGCCT 59.587 47.619 8.11 0.00 0.00 4.75
72 73 2.158957 TGTTTCGACTCTTGAGTGCCTT 60.159 45.455 8.11 0.00 0.00 4.35
73 74 2.872858 GTTTCGACTCTTGAGTGCCTTT 59.127 45.455 8.11 0.00 0.00 3.11
74 75 4.056050 GTTTCGACTCTTGAGTGCCTTTA 58.944 43.478 8.11 0.00 0.00 1.85
75 76 4.537135 TTCGACTCTTGAGTGCCTTTAT 57.463 40.909 8.11 0.00 0.00 1.40
76 77 3.849911 TCGACTCTTGAGTGCCTTTATG 58.150 45.455 8.11 0.00 0.00 1.90
77 78 3.258372 TCGACTCTTGAGTGCCTTTATGT 59.742 43.478 8.11 0.00 0.00 2.29
78 79 3.997021 CGACTCTTGAGTGCCTTTATGTT 59.003 43.478 8.11 0.00 0.00 2.71
79 80 4.452455 CGACTCTTGAGTGCCTTTATGTTT 59.548 41.667 8.11 0.00 0.00 2.83
80 81 5.637810 CGACTCTTGAGTGCCTTTATGTTTA 59.362 40.000 8.11 0.00 0.00 2.01
81 82 6.313905 CGACTCTTGAGTGCCTTTATGTTTAT 59.686 38.462 8.11 0.00 0.00 1.40
82 83 7.464710 CGACTCTTGAGTGCCTTTATGTTTATC 60.465 40.741 8.11 0.00 0.00 1.75
83 84 6.313905 ACTCTTGAGTGCCTTTATGTTTATCG 59.686 38.462 2.11 0.00 0.00 2.92
84 85 5.584649 TCTTGAGTGCCTTTATGTTTATCGG 59.415 40.000 0.00 0.00 0.00 4.18
85 86 3.625764 TGAGTGCCTTTATGTTTATCGGC 59.374 43.478 0.00 0.00 38.01 5.54
86 87 3.877508 GAGTGCCTTTATGTTTATCGGCT 59.122 43.478 0.00 0.00 38.33 5.52
87 88 5.031066 AGTGCCTTTATGTTTATCGGCTA 57.969 39.130 0.00 0.00 38.33 3.93
88 89 5.433526 AGTGCCTTTATGTTTATCGGCTAA 58.566 37.500 0.00 0.00 38.33 3.09
89 90 5.296035 AGTGCCTTTATGTTTATCGGCTAAC 59.704 40.000 0.00 0.00 38.33 2.34
90 91 5.296035 GTGCCTTTATGTTTATCGGCTAACT 59.704 40.000 0.00 0.00 38.33 2.24
91 92 6.480981 GTGCCTTTATGTTTATCGGCTAACTA 59.519 38.462 0.00 0.00 38.33 2.24
92 93 6.704493 TGCCTTTATGTTTATCGGCTAACTAG 59.296 38.462 0.00 0.00 38.33 2.57
93 94 6.704937 GCCTTTATGTTTATCGGCTAACTAGT 59.295 38.462 0.00 0.00 34.80 2.57
94 95 7.869429 GCCTTTATGTTTATCGGCTAACTAGTA 59.131 37.037 0.00 0.00 34.80 1.82
95 96 9.189723 CCTTTATGTTTATCGGCTAACTAGTAC 57.810 37.037 0.00 0.00 0.00 2.73
96 97 8.786937 TTTATGTTTATCGGCTAACTAGTACG 57.213 34.615 0.00 0.00 0.00 3.67
97 98 5.173774 TGTTTATCGGCTAACTAGTACGG 57.826 43.478 0.00 0.00 0.00 4.02
98 99 4.036734 TGTTTATCGGCTAACTAGTACGGG 59.963 45.833 0.00 0.00 0.00 5.28
99 100 0.957362 ATCGGCTAACTAGTACGGGC 59.043 55.000 0.00 0.99 0.00 6.13
100 101 1.103398 TCGGCTAACTAGTACGGGCC 61.103 60.000 14.42 14.42 36.60 5.80
101 102 1.744639 GGCTAACTAGTACGGGCCC 59.255 63.158 13.57 13.57 34.19 5.80
102 103 1.044790 GGCTAACTAGTACGGGCCCA 61.045 60.000 24.92 0.00 34.19 5.36
103 104 0.388294 GCTAACTAGTACGGGCCCAG 59.612 60.000 24.92 17.36 0.00 4.45
104 105 1.772836 CTAACTAGTACGGGCCCAGT 58.227 55.000 24.92 22.32 0.00 4.00
105 106 2.105766 CTAACTAGTACGGGCCCAGTT 58.894 52.381 24.92 24.16 34.10 3.16
106 107 0.611714 AACTAGTACGGGCCCAGTTG 59.388 55.000 24.92 7.89 0.00 3.16
107 108 0.543646 ACTAGTACGGGCCCAGTTGT 60.544 55.000 24.92 14.30 0.00 3.32
108 109 0.108329 CTAGTACGGGCCCAGTTGTG 60.108 60.000 24.92 6.57 0.00 3.33
109 110 0.832983 TAGTACGGGCCCAGTTGTGT 60.833 55.000 24.92 13.07 0.00 3.72
110 111 0.832983 AGTACGGGCCCAGTTGTGTA 60.833 55.000 24.92 11.91 0.00 2.90
111 112 0.390735 GTACGGGCCCAGTTGTGTAG 60.391 60.000 24.92 3.98 0.00 2.74
112 113 2.175035 TACGGGCCCAGTTGTGTAGC 62.175 60.000 24.92 0.00 0.00 3.58
113 114 2.361230 GGGCCCAGTTGTGTAGCC 60.361 66.667 19.95 0.00 39.47 3.93
114 115 2.434331 GGCCCAGTTGTGTAGCCA 59.566 61.111 0.00 0.00 39.80 4.75
115 116 1.971695 GGCCCAGTTGTGTAGCCAC 60.972 63.158 0.00 0.00 39.80 5.01
125 126 3.650281 TGTGTAGCCACATCATTCCAT 57.350 42.857 0.00 0.00 46.45 3.41
126 127 3.966979 TGTGTAGCCACATCATTCCATT 58.033 40.909 0.00 0.00 46.45 3.16
127 128 3.947196 TGTGTAGCCACATCATTCCATTC 59.053 43.478 0.00 0.00 46.45 2.67
128 129 4.202441 GTGTAGCCACATCATTCCATTCT 58.798 43.478 0.00 0.00 41.44 2.40
129 130 4.036027 GTGTAGCCACATCATTCCATTCTG 59.964 45.833 0.00 0.00 41.44 3.02
130 131 3.377253 AGCCACATCATTCCATTCTGT 57.623 42.857 0.00 0.00 0.00 3.41
131 132 3.021695 AGCCACATCATTCCATTCTGTG 58.978 45.455 0.00 0.00 37.53 3.66
132 133 2.756760 GCCACATCATTCCATTCTGTGT 59.243 45.455 0.00 0.00 36.37 3.72
133 134 3.428452 GCCACATCATTCCATTCTGTGTG 60.428 47.826 0.00 0.00 36.37 3.82
134 135 3.428452 CCACATCATTCCATTCTGTGTGC 60.428 47.826 0.00 0.00 36.37 4.57
135 136 2.421073 ACATCATTCCATTCTGTGTGCG 59.579 45.455 0.00 0.00 0.00 5.34
136 137 2.183478 TCATTCCATTCTGTGTGCGT 57.817 45.000 0.00 0.00 0.00 5.24
137 138 1.805943 TCATTCCATTCTGTGTGCGTG 59.194 47.619 0.00 0.00 0.00 5.34
138 139 1.536766 CATTCCATTCTGTGTGCGTGT 59.463 47.619 0.00 0.00 0.00 4.49
139 140 0.943673 TTCCATTCTGTGTGCGTGTG 59.056 50.000 0.00 0.00 0.00 3.82
140 141 1.081906 CCATTCTGTGTGCGTGTGC 60.082 57.895 0.00 0.00 43.20 4.57
141 142 1.509644 CCATTCTGTGTGCGTGTGCT 61.510 55.000 0.00 0.00 43.34 4.40
142 143 0.110509 CATTCTGTGTGCGTGTGCTC 60.111 55.000 0.00 0.00 43.34 4.26
143 144 0.532640 ATTCTGTGTGCGTGTGCTCA 60.533 50.000 0.00 0.00 41.92 4.26
144 145 1.153597 TTCTGTGTGCGTGTGCTCAG 61.154 55.000 0.00 0.00 44.50 3.35
145 146 2.588596 TGTGTGCGTGTGCTCAGG 60.589 61.111 4.17 4.17 44.50 3.86
146 147 2.588877 GTGTGCGTGTGCTCAGGT 60.589 61.111 9.88 0.00 44.50 4.00
147 148 1.300620 GTGTGCGTGTGCTCAGGTA 60.301 57.895 9.88 2.95 44.50 3.08
148 149 0.670546 GTGTGCGTGTGCTCAGGTAT 60.671 55.000 9.88 0.00 44.50 2.73
149 150 0.892063 TGTGCGTGTGCTCAGGTATA 59.108 50.000 9.88 1.62 39.51 1.47
150 151 1.135112 TGTGCGTGTGCTCAGGTATAG 60.135 52.381 9.88 0.00 39.51 1.31
151 152 0.179111 TGCGTGTGCTCAGGTATAGC 60.179 55.000 9.88 0.00 43.34 2.97
152 153 0.876342 GCGTGTGCTCAGGTATAGCC 60.876 60.000 9.88 0.00 39.30 3.93
153 154 3.231424 GCGTGTGCTCAGGTATAGCCT 62.231 57.143 9.88 0.00 43.35 4.58
161 162 3.568578 GGTATAGCCTGCCCTGCT 58.431 61.111 0.00 0.00 42.81 4.24
162 163 1.839894 GGTATAGCCTGCCCTGCTT 59.160 57.895 0.00 0.00 40.23 3.91
163 164 0.536006 GGTATAGCCTGCCCTGCTTG 60.536 60.000 0.00 0.00 40.23 4.01
164 165 1.149174 TATAGCCTGCCCTGCTTGC 59.851 57.895 0.00 0.00 40.23 4.01
165 166 1.348008 TATAGCCTGCCCTGCTTGCT 61.348 55.000 7.76 7.76 40.23 3.91
166 167 2.220786 ATAGCCTGCCCTGCTTGCTT 62.221 55.000 7.90 0.00 40.23 3.91
167 168 2.430704 TAGCCTGCCCTGCTTGCTTT 62.431 55.000 7.90 0.00 40.23 3.51
168 169 1.978617 GCCTGCCCTGCTTGCTTTA 60.979 57.895 0.00 0.00 0.00 1.85
169 170 1.325476 GCCTGCCCTGCTTGCTTTAT 61.325 55.000 0.00 0.00 0.00 1.40
170 171 2.023788 GCCTGCCCTGCTTGCTTTATA 61.024 52.381 0.00 0.00 0.00 0.98
171 172 2.378038 CCTGCCCTGCTTGCTTTATAA 58.622 47.619 0.00 0.00 0.00 0.98
172 173 2.961062 CCTGCCCTGCTTGCTTTATAAT 59.039 45.455 0.00 0.00 0.00 1.28
173 174 4.144297 CCTGCCCTGCTTGCTTTATAATA 58.856 43.478 0.00 0.00 0.00 0.98
174 175 4.217118 CCTGCCCTGCTTGCTTTATAATAG 59.783 45.833 0.00 0.00 0.00 1.73
175 176 4.144297 TGCCCTGCTTGCTTTATAATAGG 58.856 43.478 0.00 0.00 0.00 2.57
176 177 4.145052 GCCCTGCTTGCTTTATAATAGGT 58.855 43.478 0.00 0.00 0.00 3.08
177 178 4.584743 GCCCTGCTTGCTTTATAATAGGTT 59.415 41.667 0.00 0.00 0.00 3.50
178 179 5.507985 GCCCTGCTTGCTTTATAATAGGTTG 60.508 44.000 0.00 0.00 0.00 3.77
179 180 5.594317 CCCTGCTTGCTTTATAATAGGTTGT 59.406 40.000 0.00 0.00 0.00 3.32
180 181 6.096846 CCCTGCTTGCTTTATAATAGGTTGTT 59.903 38.462 0.00 0.00 0.00 2.83
181 182 7.363793 CCCTGCTTGCTTTATAATAGGTTGTTT 60.364 37.037 0.00 0.00 0.00 2.83
182 183 7.489113 CCTGCTTGCTTTATAATAGGTTGTTTG 59.511 37.037 0.00 0.00 0.00 2.93
183 184 7.891561 TGCTTGCTTTATAATAGGTTGTTTGT 58.108 30.769 0.00 0.00 0.00 2.83
184 185 9.015367 TGCTTGCTTTATAATAGGTTGTTTGTA 57.985 29.630 0.00 0.00 0.00 2.41
185 186 9.285770 GCTTGCTTTATAATAGGTTGTTTGTAC 57.714 33.333 0.00 0.00 0.00 2.90
194 195 9.813446 ATAATAGGTTGTTTGTACTACAGCTAC 57.187 33.333 12.53 5.16 32.57 3.58
195 196 5.803237 AGGTTGTTTGTACTACAGCTACT 57.197 39.130 12.53 3.53 32.57 2.57
196 197 5.539048 AGGTTGTTTGTACTACAGCTACTG 58.461 41.667 12.53 0.00 37.52 2.74
197 198 4.151867 GGTTGTTTGTACTACAGCTACTGC 59.848 45.833 12.53 0.00 34.37 4.40
198 199 3.921677 TGTTTGTACTACAGCTACTGCC 58.078 45.455 0.00 0.00 40.80 4.85
199 200 3.322541 TGTTTGTACTACAGCTACTGCCA 59.677 43.478 0.00 0.00 40.80 4.92
200 201 4.020573 TGTTTGTACTACAGCTACTGCCAT 60.021 41.667 0.00 0.00 40.80 4.40
201 202 4.819105 TTGTACTACAGCTACTGCCATT 57.181 40.909 0.00 0.00 40.80 3.16
202 203 4.386867 TGTACTACAGCTACTGCCATTC 57.613 45.455 0.00 0.00 40.80 2.67
203 204 4.023980 TGTACTACAGCTACTGCCATTCT 58.976 43.478 0.00 0.00 40.80 2.40
204 205 3.810310 ACTACAGCTACTGCCATTCTC 57.190 47.619 0.00 0.00 40.80 2.87
205 206 3.099905 ACTACAGCTACTGCCATTCTCA 58.900 45.455 0.00 0.00 40.80 3.27
206 207 3.515502 ACTACAGCTACTGCCATTCTCAA 59.484 43.478 0.00 0.00 40.80 3.02
207 208 3.641434 ACAGCTACTGCCATTCTCAAT 57.359 42.857 0.00 0.00 40.80 2.57
208 209 3.276857 ACAGCTACTGCCATTCTCAATG 58.723 45.455 0.00 0.00 40.80 2.82
209 210 3.276857 CAGCTACTGCCATTCTCAATGT 58.723 45.455 0.00 0.00 40.80 2.71
210 211 3.693085 CAGCTACTGCCATTCTCAATGTT 59.307 43.478 0.00 0.00 40.80 2.71
211 212 3.693085 AGCTACTGCCATTCTCAATGTTG 59.307 43.478 0.00 0.00 40.80 3.33
212 213 3.691118 GCTACTGCCATTCTCAATGTTGA 59.309 43.478 0.00 0.00 37.18 3.18
213 214 6.374352 AGCTACTGCCATTCTCAATGTTGAG 61.374 44.000 14.99 14.99 46.83 3.02
223 224 2.416547 CTCAATGTTGAGCCCTTGTACG 59.583 50.000 9.59 0.00 46.97 3.67
224 225 2.037902 TCAATGTTGAGCCCTTGTACGA 59.962 45.455 0.00 0.00 32.50 3.43
225 226 2.094762 ATGTTGAGCCCTTGTACGAC 57.905 50.000 0.00 0.00 0.00 4.34
226 227 0.753867 TGTTGAGCCCTTGTACGACA 59.246 50.000 0.00 0.00 0.00 4.35
227 228 1.145803 GTTGAGCCCTTGTACGACAC 58.854 55.000 0.00 0.00 0.00 3.67
228 229 0.753867 TTGAGCCCTTGTACGACACA 59.246 50.000 0.00 0.00 34.51 3.72
229 230 0.973632 TGAGCCCTTGTACGACACAT 59.026 50.000 0.00 0.00 36.90 3.21
230 231 1.346395 TGAGCCCTTGTACGACACATT 59.654 47.619 0.00 0.00 36.90 2.71
231 232 2.000447 GAGCCCTTGTACGACACATTC 59.000 52.381 0.00 0.00 36.90 2.67
232 233 1.346395 AGCCCTTGTACGACACATTCA 59.654 47.619 0.00 0.00 36.90 2.57
233 234 2.027192 AGCCCTTGTACGACACATTCAT 60.027 45.455 0.00 0.00 36.90 2.57
234 235 3.196901 AGCCCTTGTACGACACATTCATA 59.803 43.478 0.00 0.00 36.90 2.15
235 236 4.127171 GCCCTTGTACGACACATTCATAT 58.873 43.478 0.00 0.00 36.90 1.78
236 237 4.024893 GCCCTTGTACGACACATTCATATG 60.025 45.833 0.00 0.00 36.90 1.78
237 238 4.024893 CCCTTGTACGACACATTCATATGC 60.025 45.833 0.00 0.00 36.90 3.14
238 239 4.811024 CCTTGTACGACACATTCATATGCT 59.189 41.667 0.00 0.00 36.90 3.79
239 240 5.277011 CCTTGTACGACACATTCATATGCTG 60.277 44.000 0.00 0.76 36.90 4.41
240 241 4.754322 TGTACGACACATTCATATGCTGT 58.246 39.130 0.00 1.42 35.03 4.40
241 242 5.175127 TGTACGACACATTCATATGCTGTT 58.825 37.500 7.73 2.17 35.03 3.16
242 243 6.334202 TGTACGACACATTCATATGCTGTTA 58.666 36.000 7.73 0.00 35.03 2.41
243 244 6.983890 TGTACGACACATTCATATGCTGTTAT 59.016 34.615 7.73 1.47 35.03 1.89
244 245 6.291067 ACGACACATTCATATGCTGTTATG 57.709 37.500 7.73 4.75 35.03 1.90
245 246 5.237127 ACGACACATTCATATGCTGTTATGG 59.763 40.000 7.73 4.76 35.03 2.74
246 247 5.237127 CGACACATTCATATGCTGTTATGGT 59.763 40.000 7.73 4.23 35.03 3.55
247 248 6.238456 CGACACATTCATATGCTGTTATGGTT 60.238 38.462 7.73 0.00 35.03 3.67
248 249 7.408756 ACACATTCATATGCTGTTATGGTTT 57.591 32.000 7.73 0.00 35.03 3.27
249 250 7.483307 ACACATTCATATGCTGTTATGGTTTC 58.517 34.615 7.73 0.00 35.03 2.78
250 251 6.919662 CACATTCATATGCTGTTATGGTTTCC 59.080 38.462 7.73 0.00 35.03 3.13
251 252 6.040842 ACATTCATATGCTGTTATGGTTTCCC 59.959 38.462 0.00 0.00 35.03 3.97
252 253 5.387113 TCATATGCTGTTATGGTTTCCCT 57.613 39.130 0.00 0.00 31.71 4.20
253 254 5.765510 TCATATGCTGTTATGGTTTCCCTT 58.234 37.500 0.00 0.00 31.71 3.95
254 255 6.194235 TCATATGCTGTTATGGTTTCCCTTT 58.806 36.000 0.00 0.00 31.71 3.11
255 256 7.350382 TCATATGCTGTTATGGTTTCCCTTTA 58.650 34.615 0.00 0.00 31.71 1.85
256 257 7.836685 TCATATGCTGTTATGGTTTCCCTTTAA 59.163 33.333 0.00 0.00 31.71 1.52
257 258 8.641541 CATATGCTGTTATGGTTTCCCTTTAAT 58.358 33.333 0.00 0.00 0.00 1.40
258 259 6.926630 TGCTGTTATGGTTTCCCTTTAATT 57.073 33.333 0.00 0.00 0.00 1.40
259 260 7.309770 TGCTGTTATGGTTTCCCTTTAATTT 57.690 32.000 0.00 0.00 0.00 1.82
260 261 7.740805 TGCTGTTATGGTTTCCCTTTAATTTT 58.259 30.769 0.00 0.00 0.00 1.82
261 262 8.214364 TGCTGTTATGGTTTCCCTTTAATTTTT 58.786 29.630 0.00 0.00 0.00 1.94
262 263 9.713713 GCTGTTATGGTTTCCCTTTAATTTTTA 57.286 29.630 0.00 0.00 0.00 1.52
268 269 8.614469 TGGTTTCCCTTTAATTTTTATGCTTG 57.386 30.769 0.00 0.00 0.00 4.01
269 270 8.432805 TGGTTTCCCTTTAATTTTTATGCTTGA 58.567 29.630 0.00 0.00 0.00 3.02
270 271 9.278978 GGTTTCCCTTTAATTTTTATGCTTGAA 57.721 29.630 0.00 0.00 0.00 2.69
272 273 8.527567 TTCCCTTTAATTTTTATGCTTGAACG 57.472 30.769 0.00 0.00 0.00 3.95
273 274 7.662897 TCCCTTTAATTTTTATGCTTGAACGT 58.337 30.769 0.00 0.00 0.00 3.99
274 275 7.596995 TCCCTTTAATTTTTATGCTTGAACGTG 59.403 33.333 0.00 0.00 0.00 4.49
275 276 7.226772 CCTTTAATTTTTATGCTTGAACGTGC 58.773 34.615 0.00 0.00 0.00 5.34
276 277 6.698359 TTAATTTTTATGCTTGAACGTGCC 57.302 33.333 0.00 0.00 0.00 5.01
277 278 2.715737 TTTTATGCTTGAACGTGCCC 57.284 45.000 0.00 0.00 0.00 5.36
278 279 0.885196 TTTATGCTTGAACGTGCCCC 59.115 50.000 0.00 0.00 0.00 5.80
279 280 0.037590 TTATGCTTGAACGTGCCCCT 59.962 50.000 0.00 0.00 0.00 4.79
280 281 0.037590 TATGCTTGAACGTGCCCCTT 59.962 50.000 0.00 0.00 0.00 3.95
281 282 0.827507 ATGCTTGAACGTGCCCCTTT 60.828 50.000 0.00 0.00 0.00 3.11
282 283 1.040339 TGCTTGAACGTGCCCCTTTT 61.040 50.000 0.00 0.00 0.00 2.27
283 284 0.104120 GCTTGAACGTGCCCCTTTTT 59.896 50.000 0.00 0.00 0.00 1.94
318 319 6.214191 TCCTGATTCTCTGTAGTTGACATC 57.786 41.667 0.00 0.00 37.45 3.06
325 326 5.724328 TCTCTGTAGTTGACATCCATTCAC 58.276 41.667 0.00 0.00 37.45 3.18
337 338 6.714356 TGACATCCATTCACTCACATGTTAAA 59.286 34.615 0.00 0.00 0.00 1.52
372 374 2.932614 GCGTGTTTGCAGACAGATAGAT 59.067 45.455 10.84 0.00 34.15 1.98
390 392 6.609212 AGATAGATGAGTACACACACCTCATT 59.391 38.462 0.00 0.00 43.94 2.57
425 427 5.851720 AGCACAGATCAAGATGGTATGTAG 58.148 41.667 0.00 0.00 0.00 2.74
426 428 5.600069 AGCACAGATCAAGATGGTATGTAGA 59.400 40.000 0.00 0.00 0.00 2.59
428 430 6.201806 GCACAGATCAAGATGGTATGTAGAAC 59.798 42.308 0.00 0.00 0.00 3.01
429 431 7.267857 CACAGATCAAGATGGTATGTAGAACA 58.732 38.462 0.00 0.00 0.00 3.18
434 436 7.905604 TCAAGATGGTATGTAGAACAAACTG 57.094 36.000 0.00 0.00 0.00 3.16
435 437 6.371548 TCAAGATGGTATGTAGAACAAACTGC 59.628 38.462 0.00 0.00 0.00 4.40
443 445 0.304705 AGAACAAACTGCGTGCTTCG 59.695 50.000 0.00 0.00 43.12 3.79
455 457 2.030457 GCGTGCTTCGTTTATGCAGTAT 59.970 45.455 0.00 0.00 38.79 2.12
457 459 4.606232 GCGTGCTTCGTTTATGCAGTATAG 60.606 45.833 0.00 0.00 38.79 1.31
458 460 4.738252 CGTGCTTCGTTTATGCAGTATAGA 59.262 41.667 0.00 0.00 38.79 1.98
459 461 5.402568 CGTGCTTCGTTTATGCAGTATAGAT 59.597 40.000 0.00 0.00 38.79 1.98
460 462 6.584954 GTGCTTCGTTTATGCAGTATAGATG 58.415 40.000 0.00 0.00 38.79 2.90
461 463 6.420903 GTGCTTCGTTTATGCAGTATAGATGA 59.579 38.462 0.00 0.00 38.79 2.92
464 466 7.116948 GCTTCGTTTATGCAGTATAGATGATGT 59.883 37.037 0.00 0.00 0.00 3.06
465 467 8.887036 TTCGTTTATGCAGTATAGATGATGTT 57.113 30.769 0.00 0.00 0.00 2.71
466 468 9.974980 TTCGTTTATGCAGTATAGATGATGTTA 57.025 29.630 0.00 0.00 0.00 2.41
474 476 9.591792 TGCAGTATAGATGATGTTATAATCTGC 57.408 33.333 0.00 0.00 41.19 4.26
475 477 9.814899 GCAGTATAGATGATGTTATAATCTGCT 57.185 33.333 0.00 0.00 38.88 4.24
488 490 9.276590 TGTTATAATCTGCTTATGTTCAGATGG 57.723 33.333 5.62 0.00 46.11 3.51
491 493 8.839310 ATAATCTGCTTATGTTCAGATGGTAC 57.161 34.615 5.62 0.00 46.11 3.34
492 494 5.939764 TCTGCTTATGTTCAGATGGTACT 57.060 39.130 0.00 0.00 34.69 2.73
503 505 6.550108 TGTTCAGATGGTACTCCCTCTTATAC 59.450 42.308 0.00 0.00 36.75 1.47
519 521 7.201732 CCCTCTTATACTGTTTAAATGCAGGTG 60.202 40.741 9.80 0.00 37.07 4.00
534 536 1.275291 CAGGTGTGTGAAGGTATCCGT 59.725 52.381 0.00 0.00 0.00 4.69
543 545 2.496070 TGAAGGTATCCGTGAACTCCTG 59.504 50.000 0.00 0.00 0.00 3.86
550 552 1.272490 TCCGTGAACTCCTGCAGTTAG 59.728 52.381 13.81 12.10 46.10 2.34
564 566 1.079819 GTTAGCAGCGGAGTGAGCA 60.080 57.895 0.00 0.00 37.01 4.26
565 567 0.460987 GTTAGCAGCGGAGTGAGCAT 60.461 55.000 0.00 0.00 37.01 3.79
566 568 0.250234 TTAGCAGCGGAGTGAGCATT 59.750 50.000 0.00 0.00 37.01 3.56
567 569 1.111277 TAGCAGCGGAGTGAGCATTA 58.889 50.000 0.00 0.00 37.01 1.90
568 570 0.179089 AGCAGCGGAGTGAGCATTAG 60.179 55.000 0.00 0.00 37.01 1.73
571 573 0.978146 AGCGGAGTGAGCATTAGGGT 60.978 55.000 0.00 0.00 37.01 4.34
572 574 0.530870 GCGGAGTGAGCATTAGGGTC 60.531 60.000 0.00 0.00 44.35 4.46
573 575 0.105039 CGGAGTGAGCATTAGGGTCC 59.895 60.000 0.00 0.00 43.44 4.46
574 576 0.470341 GGAGTGAGCATTAGGGTCCC 59.530 60.000 0.00 0.00 43.44 4.46
576 578 1.559682 GAGTGAGCATTAGGGTCCCAA 59.440 52.381 11.55 2.83 43.44 4.12
577 579 2.173569 GAGTGAGCATTAGGGTCCCAAT 59.826 50.000 11.55 5.25 43.44 3.16
578 580 2.092212 AGTGAGCATTAGGGTCCCAATG 60.092 50.000 20.46 20.46 43.44 2.82
581 583 3.922426 CATTAGGGTCCCAATGCCA 57.078 52.632 11.55 0.00 0.00 4.92
583 585 2.034124 CATTAGGGTCCCAATGCCAAG 58.966 52.381 11.55 0.00 0.00 3.61
585 587 1.377690 TAGGGTCCCAATGCCAAGAA 58.622 50.000 11.55 0.00 0.00 2.52
599 677 3.193267 TGCCAAGAATGTATGCCAAGAAC 59.807 43.478 0.00 0.00 0.00 3.01
607 685 0.250234 TATGCCAAGAACGCAGCTCT 59.750 50.000 0.00 0.00 40.15 4.09
608 686 1.023513 ATGCCAAGAACGCAGCTCTC 61.024 55.000 0.00 0.00 40.15 3.20
609 687 2.394563 GCCAAGAACGCAGCTCTCC 61.395 63.158 0.00 0.00 28.07 3.71
610 688 1.743252 CCAAGAACGCAGCTCTCCC 60.743 63.158 0.00 0.00 28.07 4.30
611 689 1.004560 CAAGAACGCAGCTCTCCCA 60.005 57.895 0.00 0.00 28.07 4.37
612 690 0.603707 CAAGAACGCAGCTCTCCCAA 60.604 55.000 0.00 0.00 28.07 4.12
613 691 0.108585 AAGAACGCAGCTCTCCCAAA 59.891 50.000 0.00 0.00 28.07 3.28
614 692 0.326264 AGAACGCAGCTCTCCCAAAT 59.674 50.000 0.00 0.00 0.00 2.32
615 693 0.729690 GAACGCAGCTCTCCCAAATC 59.270 55.000 0.00 0.00 0.00 2.17
616 694 0.678048 AACGCAGCTCTCCCAAATCC 60.678 55.000 0.00 0.00 0.00 3.01
617 695 1.821332 CGCAGCTCTCCCAAATCCC 60.821 63.158 0.00 0.00 0.00 3.85
618 696 1.304282 GCAGCTCTCCCAAATCCCA 59.696 57.895 0.00 0.00 0.00 4.37
619 697 0.323725 GCAGCTCTCCCAAATCCCAA 60.324 55.000 0.00 0.00 0.00 4.12
620 698 1.687368 GCAGCTCTCCCAAATCCCAAT 60.687 52.381 0.00 0.00 0.00 3.16
621 699 2.029623 CAGCTCTCCCAAATCCCAATG 58.970 52.381 0.00 0.00 0.00 2.82
622 700 1.642762 AGCTCTCCCAAATCCCAATGT 59.357 47.619 0.00 0.00 0.00 2.71
623 701 2.043526 AGCTCTCCCAAATCCCAATGTT 59.956 45.455 0.00 0.00 0.00 2.71
624 702 2.833943 GCTCTCCCAAATCCCAATGTTT 59.166 45.455 0.00 0.00 0.00 2.83
625 703 3.261643 GCTCTCCCAAATCCCAATGTTTT 59.738 43.478 0.00 0.00 0.00 2.43
626 704 4.263025 GCTCTCCCAAATCCCAATGTTTTT 60.263 41.667 0.00 0.00 0.00 1.94
627 705 5.226194 TCTCCCAAATCCCAATGTTTTTG 57.774 39.130 0.00 0.00 0.00 2.44
628 706 4.657969 TCTCCCAAATCCCAATGTTTTTGT 59.342 37.500 0.00 0.00 0.00 2.83
629 707 5.131809 TCTCCCAAATCCCAATGTTTTTGTT 59.868 36.000 0.00 0.00 0.00 2.83
630 708 5.760131 TCCCAAATCCCAATGTTTTTGTTT 58.240 33.333 0.00 0.00 0.00 2.83
631 709 6.190587 TCCCAAATCCCAATGTTTTTGTTTT 58.809 32.000 0.00 0.00 0.00 2.43
632 710 7.346471 TCCCAAATCCCAATGTTTTTGTTTTA 58.654 30.769 0.00 0.00 0.00 1.52
633 711 7.500559 TCCCAAATCCCAATGTTTTTGTTTTAG 59.499 33.333 0.00 0.00 0.00 1.85
634 712 7.255416 CCCAAATCCCAATGTTTTTGTTTTAGG 60.255 37.037 0.00 0.00 0.00 2.69
635 713 7.255416 CCAAATCCCAATGTTTTTGTTTTAGGG 60.255 37.037 0.00 0.00 35.09 3.53
636 714 5.959583 TCCCAATGTTTTTGTTTTAGGGT 57.040 34.783 0.00 0.00 35.31 4.34
637 715 5.919755 TCCCAATGTTTTTGTTTTAGGGTC 58.080 37.500 0.00 0.00 35.31 4.46
655 733 3.106827 GGTCCCAAATCCCAATGTTGAT 58.893 45.455 0.00 0.00 0.00 2.57
656 734 3.132824 GGTCCCAAATCCCAATGTTGATC 59.867 47.826 0.00 0.00 0.00 2.92
663 741 1.064463 TCCCAATGTTGATCAGGAGGC 60.064 52.381 0.00 0.00 0.00 4.70
664 742 1.341285 CCCAATGTTGATCAGGAGGCA 60.341 52.381 0.00 0.00 0.00 4.75
665 743 2.662866 CCAATGTTGATCAGGAGGCAT 58.337 47.619 0.00 0.00 0.00 4.40
666 744 3.028850 CCAATGTTGATCAGGAGGCATT 58.971 45.455 0.00 1.28 0.00 3.56
667 745 3.181479 CCAATGTTGATCAGGAGGCATTG 60.181 47.826 19.98 19.98 41.35 2.82
668 746 2.885135 TGTTGATCAGGAGGCATTGT 57.115 45.000 0.00 0.00 0.00 2.71
669 747 2.439409 TGTTGATCAGGAGGCATTGTG 58.561 47.619 0.00 0.00 0.00 3.33
670 748 2.224843 TGTTGATCAGGAGGCATTGTGT 60.225 45.455 0.00 0.00 0.00 3.72
671 749 3.008923 TGTTGATCAGGAGGCATTGTGTA 59.991 43.478 0.00 0.00 0.00 2.90
672 750 3.998913 TGATCAGGAGGCATTGTGTAA 57.001 42.857 0.00 0.00 0.00 2.41
673 751 3.877559 TGATCAGGAGGCATTGTGTAAG 58.122 45.455 0.00 0.00 0.00 2.34
674 752 3.264193 TGATCAGGAGGCATTGTGTAAGT 59.736 43.478 0.00 0.00 0.00 2.24
675 753 4.469586 TGATCAGGAGGCATTGTGTAAGTA 59.530 41.667 0.00 0.00 0.00 2.24
676 754 5.130975 TGATCAGGAGGCATTGTGTAAGTAT 59.869 40.000 0.00 0.00 0.00 2.12
677 755 6.326323 TGATCAGGAGGCATTGTGTAAGTATA 59.674 38.462 0.00 0.00 0.00 1.47
681 759 5.057149 GGAGGCATTGTGTAAGTATAGGTG 58.943 45.833 0.00 0.00 0.00 4.00
684 762 6.717289 AGGCATTGTGTAAGTATAGGTGAAA 58.283 36.000 0.00 0.00 0.00 2.69
696 774 6.303839 AGTATAGGTGAAAGAAGTGGCAAAA 58.696 36.000 0.00 0.00 0.00 2.44
731 1739 2.177594 GATCTAGCATCCTGCCCGGG 62.178 65.000 19.09 19.09 46.52 5.73
752 1760 1.725164 CGTGCCTCCTTTTCGTAAGTC 59.275 52.381 0.00 0.00 39.48 3.01
799 1824 3.260128 TGCATGAGTGATGTCAACTCTCT 59.740 43.478 11.86 0.00 34.14 3.10
810 1840 3.053455 GTCAACTCTCTGTTCTTGGACG 58.947 50.000 0.00 0.00 36.63 4.79
855 1890 0.109723 TGGGTCGTTCCTTCCCTTTG 59.890 55.000 0.00 0.00 41.58 2.77
861 1896 1.039856 GTTCCTTCCCTTTGCTTGCA 58.960 50.000 0.00 0.00 0.00 4.08
862 1897 1.412343 GTTCCTTCCCTTTGCTTGCAA 59.588 47.619 3.70 3.70 0.00 4.08
890 1925 5.864474 ACAGTAGTATTCAAGAAAGCAGACG 59.136 40.000 0.00 0.00 0.00 4.18
919 1955 5.825593 ATAAGAAGAGTTTCACACCCAGA 57.174 39.130 0.00 0.00 35.70 3.86
921 1957 4.713792 AGAAGAGTTTCACACCCAGAAT 57.286 40.909 0.00 0.00 35.70 2.40
922 1958 4.646572 AGAAGAGTTTCACACCCAGAATC 58.353 43.478 0.00 0.00 35.70 2.52
924 1960 4.278975 AGAGTTTCACACCCAGAATCTC 57.721 45.455 0.00 0.00 40.00 2.75
925 1961 3.648067 AGAGTTTCACACCCAGAATCTCA 59.352 43.478 13.37 0.00 41.18 3.27
926 1962 4.288105 AGAGTTTCACACCCAGAATCTCAT 59.712 41.667 13.37 1.20 41.18 2.90
929 1965 1.134699 TCACACCCAGAATCTCATCGC 60.135 52.381 0.00 0.00 0.00 4.58
930 1966 0.179000 ACACCCAGAATCTCATCGCC 59.821 55.000 0.00 0.00 0.00 5.54
931 1967 0.533755 CACCCAGAATCTCATCGCCC 60.534 60.000 0.00 0.00 0.00 6.13
932 1968 0.982852 ACCCAGAATCTCATCGCCCA 60.983 55.000 0.00 0.00 0.00 5.36
957 1993 1.142531 AGCATCGATCGAGCAGCAA 59.857 52.632 29.37 7.64 0.00 3.91
1036 2084 2.046314 CCACCACGTCCACCATCC 60.046 66.667 0.00 0.00 0.00 3.51
1068 2116 5.163642 CCTTCTTCTCTTCCTGATGCATTTG 60.164 44.000 0.00 0.00 0.00 2.32
1310 2367 1.035385 TACCGCTTCTCCATGCTCGA 61.035 55.000 0.00 0.00 0.00 4.04
1311 2368 1.591059 CCGCTTCTCCATGCTCGAG 60.591 63.158 8.45 8.45 0.00 4.04
1344 2401 1.302033 CTTGTTCCTCTGCCGCACT 60.302 57.895 0.00 0.00 0.00 4.40
1395 2452 1.226974 CAAGTCCCGCATCGACGAT 60.227 57.895 4.05 4.05 35.33 3.73
1467 2524 2.507110 ATAATCCCATCGCGCCGGAG 62.507 60.000 5.05 1.55 0.00 4.63
1530 2587 1.332997 GATGACGGGGAGTACTACGTG 59.667 57.143 20.11 8.70 39.95 4.49
1554 2611 2.262915 CACCTCAGGCTCACGGTC 59.737 66.667 0.00 0.00 0.00 4.79
1630 2687 0.248094 CGACGCGTCTGAGCTTATCA 60.248 55.000 33.94 0.00 36.21 2.15
1836 2905 0.252103 TGGCCTTCTCCTACGAGGTT 60.252 55.000 3.32 0.00 36.53 3.50
1849 2918 1.376037 GAGGTTGCCTTCGTGGAGG 60.376 63.158 1.63 0.00 39.93 4.30
2115 3187 3.941188 CACCCGGTGCTCCTGTGT 61.941 66.667 4.16 1.79 32.89 3.72
2155 3227 4.845447 GCATCCTGGGCATGGGCA 62.845 66.667 0.00 0.00 43.71 5.36
2193 3265 2.125512 GCGCTCGGGTTCATGTCT 60.126 61.111 0.00 0.00 0.00 3.41
2199 3271 2.668632 GGGTTCATGTCTCCGGCA 59.331 61.111 0.00 0.00 0.00 5.69
2376 3448 4.573162 GGGTTCTCCGTCTTCACG 57.427 61.111 0.00 0.00 46.29 4.35
2398 3470 3.245948 CTCAACTGCGTGCTGTGGC 62.246 63.158 5.11 0.00 39.26 5.01
2990 4062 3.506810 CCTCTTTCTGCTTCGTCTACTG 58.493 50.000 0.00 0.00 0.00 2.74
3161 4233 6.094464 AGGGGTAAATTCCTATTCGAAAAACG 59.906 38.462 0.00 0.00 44.09 3.60
3212 4284 5.124138 TCTCCTAATGACTCTGACGAAGAAC 59.876 44.000 0.00 0.00 33.37 3.01
3541 5275 2.017049 CGAAGGCCGAGGAAATTGATT 58.983 47.619 0.00 0.00 41.76 2.57
3563 5297 2.695666 TGAGAAGAATAAGGAGAGGCGG 59.304 50.000 0.00 0.00 0.00 6.13
3576 5310 1.518903 GAGGCGGCAGTTCAAGCTTT 61.519 55.000 13.08 0.00 0.00 3.51
3577 5311 0.250727 AGGCGGCAGTTCAAGCTTTA 60.251 50.000 13.08 0.00 0.00 1.85
3583 5317 3.191371 CGGCAGTTCAAGCTTTAGGATTT 59.809 43.478 0.00 0.00 0.00 2.17
3612 5346 5.395214 GGCACCCAAAGTAAATATTCAAGGG 60.395 44.000 0.00 0.00 39.66 3.95
3632 5366 4.019321 AGGGCACTCAAGCATCTAAGTTTA 60.019 41.667 0.00 0.00 35.83 2.01
3789 5526 6.183361 CCATCCTGGTATGAAATAGTCCTTGA 60.183 42.308 7.44 0.00 31.35 3.02
3896 5638 1.173043 CAAGTTTGGATGCCCGCTTA 58.827 50.000 0.00 0.00 34.29 3.09
3923 5665 5.209240 ACATTTCGAACACCGTTATTTGTG 58.791 37.500 0.00 0.00 39.75 3.33
3924 5666 5.007823 ACATTTCGAACACCGTTATTTGTGA 59.992 36.000 0.00 0.00 39.75 3.58
3928 5670 6.782298 TCGAACACCGTTATTTGTGAAATA 57.218 33.333 0.00 0.00 39.75 1.40
3961 5703 9.884636 TGCTTCACTTATATTTGTTAGAGCTTA 57.115 29.630 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.544595 AAAGGAGGCGACCCACTAGT 60.545 55.000 0.00 0.00 0.00 2.57
2 3 0.834687 ACAAAGGAGGCGACCCACTA 60.835 55.000 0.00 0.00 0.00 2.74
3 4 2.147387 ACAAAGGAGGCGACCCACT 61.147 57.895 0.00 0.00 0.00 4.00
4 5 1.966451 CACAAAGGAGGCGACCCAC 60.966 63.158 0.00 0.00 0.00 4.61
6 7 2.359975 CCACAAAGGAGGCGACCC 60.360 66.667 0.00 0.00 41.22 4.46
7 8 3.056328 GCCACAAAGGAGGCGACC 61.056 66.667 0.00 0.00 40.98 4.79
12 13 1.065199 TGCTATGAGCCACAAAGGAGG 60.065 52.381 0.00 0.00 41.51 4.30
13 14 2.408271 TGCTATGAGCCACAAAGGAG 57.592 50.000 0.00 0.00 41.51 3.69
14 15 4.712051 ATATGCTATGAGCCACAAAGGA 57.288 40.909 0.00 0.00 41.51 3.36
15 16 5.942236 ACATATATGCTATGAGCCACAAAGG 59.058 40.000 12.79 0.00 41.51 3.11
16 17 8.728337 ATACATATATGCTATGAGCCACAAAG 57.272 34.615 12.79 0.00 41.51 2.77
17 18 8.320617 TGATACATATATGCTATGAGCCACAAA 58.679 33.333 12.79 0.00 41.51 2.83
18 19 7.850193 TGATACATATATGCTATGAGCCACAA 58.150 34.615 12.79 0.00 41.51 3.33
20 21 8.366401 AGATGATACATATATGCTATGAGCCAC 58.634 37.037 12.79 0.00 41.51 5.01
21 22 8.488308 AGATGATACATATATGCTATGAGCCA 57.512 34.615 12.79 5.24 41.51 4.75
36 37 8.855110 AGAGTCGAAACATCTAAGATGATACAT 58.145 33.333 0.00 0.00 0.00 2.29
37 38 8.226819 AGAGTCGAAACATCTAAGATGATACA 57.773 34.615 0.00 0.00 0.00 2.29
38 39 8.963130 CAAGAGTCGAAACATCTAAGATGATAC 58.037 37.037 0.00 0.00 0.00 2.24
39 40 8.903820 TCAAGAGTCGAAACATCTAAGATGATA 58.096 33.333 0.00 0.00 0.00 2.15
40 41 7.776107 TCAAGAGTCGAAACATCTAAGATGAT 58.224 34.615 0.00 0.00 0.00 2.45
41 42 7.094162 ACTCAAGAGTCGAAACATCTAAGATGA 60.094 37.037 0.00 0.00 36.92 2.92
42 43 7.009083 CACTCAAGAGTCGAAACATCTAAGATG 59.991 40.741 0.00 0.00 40.20 2.90
43 44 7.032580 CACTCAAGAGTCGAAACATCTAAGAT 58.967 38.462 0.00 0.00 40.20 2.40
44 45 6.382608 CACTCAAGAGTCGAAACATCTAAGA 58.617 40.000 0.00 0.00 40.20 2.10
45 46 5.061560 GCACTCAAGAGTCGAAACATCTAAG 59.938 44.000 0.00 0.00 40.20 2.18
46 47 4.923871 GCACTCAAGAGTCGAAACATCTAA 59.076 41.667 0.00 0.00 40.20 2.10
47 48 4.486090 GCACTCAAGAGTCGAAACATCTA 58.514 43.478 0.00 0.00 40.20 1.98
48 49 3.321497 GCACTCAAGAGTCGAAACATCT 58.679 45.455 0.00 0.00 40.20 2.90
49 50 2.413453 GGCACTCAAGAGTCGAAACATC 59.587 50.000 0.00 0.00 40.20 3.06
50 51 2.037772 AGGCACTCAAGAGTCGAAACAT 59.962 45.455 0.00 0.00 40.20 2.71
51 52 1.412710 AGGCACTCAAGAGTCGAAACA 59.587 47.619 0.00 0.00 40.20 2.83
52 53 2.156343 AGGCACTCAAGAGTCGAAAC 57.844 50.000 0.00 0.00 40.20 2.78
53 54 2.910688 AAGGCACTCAAGAGTCGAAA 57.089 45.000 0.00 0.00 38.49 3.46
54 55 2.910688 AAAGGCACTCAAGAGTCGAA 57.089 45.000 0.00 0.00 38.49 3.71
55 56 3.258372 ACATAAAGGCACTCAAGAGTCGA 59.742 43.478 0.00 0.00 38.49 4.20
56 57 3.589988 ACATAAAGGCACTCAAGAGTCG 58.410 45.455 0.00 0.00 38.49 4.18
57 58 5.948992 AAACATAAAGGCACTCAAGAGTC 57.051 39.130 0.00 0.00 38.49 3.36
58 59 6.313905 CGATAAACATAAAGGCACTCAAGAGT 59.686 38.462 0.00 0.00 38.49 3.24
59 60 6.238211 CCGATAAACATAAAGGCACTCAAGAG 60.238 42.308 0.00 0.00 38.49 2.85
60 61 5.584649 CCGATAAACATAAAGGCACTCAAGA 59.415 40.000 0.00 0.00 38.49 3.02
61 62 5.730568 GCCGATAAACATAAAGGCACTCAAG 60.731 44.000 0.00 0.00 43.65 3.02
62 63 4.095782 GCCGATAAACATAAAGGCACTCAA 59.904 41.667 0.00 0.00 43.65 3.02
63 64 3.625764 GCCGATAAACATAAAGGCACTCA 59.374 43.478 0.00 0.00 43.65 3.41
64 65 3.877508 AGCCGATAAACATAAAGGCACTC 59.122 43.478 7.05 0.00 46.34 3.51
65 66 3.886123 AGCCGATAAACATAAAGGCACT 58.114 40.909 7.05 0.00 46.34 4.40
66 67 5.296035 AGTTAGCCGATAAACATAAAGGCAC 59.704 40.000 7.05 0.00 46.34 5.01
67 68 5.433526 AGTTAGCCGATAAACATAAAGGCA 58.566 37.500 7.05 0.00 46.34 4.75
68 69 6.704937 ACTAGTTAGCCGATAAACATAAAGGC 59.295 38.462 0.00 0.00 44.45 4.35
69 70 9.189723 GTACTAGTTAGCCGATAAACATAAAGG 57.810 37.037 0.00 0.00 0.00 3.11
70 71 8.899776 CGTACTAGTTAGCCGATAAACATAAAG 58.100 37.037 0.00 0.00 0.00 1.85
71 72 7.862372 CCGTACTAGTTAGCCGATAAACATAAA 59.138 37.037 0.00 0.00 0.00 1.40
72 73 7.362662 CCGTACTAGTTAGCCGATAAACATAA 58.637 38.462 0.00 0.00 0.00 1.90
73 74 6.072508 CCCGTACTAGTTAGCCGATAAACATA 60.073 42.308 0.00 0.00 0.00 2.29
74 75 5.278660 CCCGTACTAGTTAGCCGATAAACAT 60.279 44.000 0.00 0.00 0.00 2.71
75 76 4.036734 CCCGTACTAGTTAGCCGATAAACA 59.963 45.833 0.00 0.00 0.00 2.83
76 77 4.540824 CCCGTACTAGTTAGCCGATAAAC 58.459 47.826 0.00 0.00 0.00 2.01
77 78 3.004734 GCCCGTACTAGTTAGCCGATAAA 59.995 47.826 0.00 0.00 0.00 1.40
78 79 2.554032 GCCCGTACTAGTTAGCCGATAA 59.446 50.000 0.00 0.00 0.00 1.75
79 80 2.154462 GCCCGTACTAGTTAGCCGATA 58.846 52.381 0.00 0.00 0.00 2.92
80 81 0.957362 GCCCGTACTAGTTAGCCGAT 59.043 55.000 0.00 0.00 0.00 4.18
81 82 1.103398 GGCCCGTACTAGTTAGCCGA 61.103 60.000 0.00 0.00 0.00 5.54
82 83 1.361632 GGCCCGTACTAGTTAGCCG 59.638 63.158 0.00 0.00 0.00 5.52
83 84 1.044790 TGGGCCCGTACTAGTTAGCC 61.045 60.000 19.37 8.58 39.73 3.93
84 85 0.388294 CTGGGCCCGTACTAGTTAGC 59.612 60.000 19.37 0.00 0.00 3.09
85 86 1.772836 ACTGGGCCCGTACTAGTTAG 58.227 55.000 19.37 7.96 0.00 2.34
86 87 1.826720 CAACTGGGCCCGTACTAGTTA 59.173 52.381 20.81 0.00 31.01 2.24
87 88 0.611714 CAACTGGGCCCGTACTAGTT 59.388 55.000 19.37 17.84 32.23 2.24
88 89 0.543646 ACAACTGGGCCCGTACTAGT 60.544 55.000 19.37 12.06 0.00 2.57
89 90 0.108329 CACAACTGGGCCCGTACTAG 60.108 60.000 19.37 11.30 0.00 2.57
90 91 0.832983 ACACAACTGGGCCCGTACTA 60.833 55.000 19.37 0.00 0.00 1.82
91 92 0.832983 TACACAACTGGGCCCGTACT 60.833 55.000 19.37 0.99 0.00 2.73
92 93 0.390735 CTACACAACTGGGCCCGTAC 60.391 60.000 19.37 0.00 0.00 3.67
93 94 1.976898 CTACACAACTGGGCCCGTA 59.023 57.895 19.37 11.03 0.00 4.02
94 95 2.747686 CTACACAACTGGGCCCGT 59.252 61.111 19.37 15.59 0.00 5.28
95 96 2.746277 GCTACACAACTGGGCCCG 60.746 66.667 19.37 14.85 0.00 6.13
96 97 2.361230 GGCTACACAACTGGGCCC 60.361 66.667 17.59 17.59 35.56 5.80
97 98 1.971695 GTGGCTACACAACTGGGCC 60.972 63.158 0.00 0.00 46.90 5.80
98 99 3.668386 GTGGCTACACAACTGGGC 58.332 61.111 0.00 0.00 46.90 5.36
106 107 6.378072 ACAGAATGGAATGATGTGGCTACAC 61.378 44.000 4.50 0.20 44.73 2.90
107 108 4.201657 CAGAATGGAATGATGTGGCTACA 58.798 43.478 4.99 4.99 41.89 2.74
108 109 4.036027 CACAGAATGGAATGATGTGGCTAC 59.964 45.833 0.00 0.00 43.62 3.58
109 110 4.201657 CACAGAATGGAATGATGTGGCTA 58.798 43.478 0.00 0.00 43.62 3.93
110 111 3.021695 CACAGAATGGAATGATGTGGCT 58.978 45.455 0.00 0.00 43.62 4.75
111 112 2.756760 ACACAGAATGGAATGATGTGGC 59.243 45.455 8.33 0.00 43.83 5.01
112 113 3.428452 GCACACAGAATGGAATGATGTGG 60.428 47.826 8.33 0.00 43.83 4.17
113 114 3.729762 CGCACACAGAATGGAATGATGTG 60.730 47.826 2.29 2.29 44.60 3.21
114 115 2.421073 CGCACACAGAATGGAATGATGT 59.579 45.455 0.00 0.00 43.62 3.06
115 116 2.421073 ACGCACACAGAATGGAATGATG 59.579 45.455 0.00 0.00 43.62 3.07
116 117 2.421073 CACGCACACAGAATGGAATGAT 59.579 45.455 0.00 0.00 43.62 2.45
117 118 1.805943 CACGCACACAGAATGGAATGA 59.194 47.619 0.00 0.00 43.62 2.57
118 119 1.536766 ACACGCACACAGAATGGAATG 59.463 47.619 0.00 0.00 43.62 2.67
119 120 1.536766 CACACGCACACAGAATGGAAT 59.463 47.619 0.00 0.00 43.62 3.01
120 121 0.943673 CACACGCACACAGAATGGAA 59.056 50.000 0.00 0.00 43.62 3.53
121 122 1.506309 GCACACGCACACAGAATGGA 61.506 55.000 0.00 0.00 38.34 3.41
122 123 1.081906 GCACACGCACACAGAATGG 60.082 57.895 0.00 0.00 38.34 3.16
123 124 0.110509 GAGCACACGCACACAGAATG 60.111 55.000 0.00 0.00 42.27 2.67
124 125 0.532640 TGAGCACACGCACACAGAAT 60.533 50.000 0.00 0.00 42.27 2.40
125 126 1.153469 TGAGCACACGCACACAGAA 60.153 52.632 0.00 0.00 42.27 3.02
126 127 1.592400 CTGAGCACACGCACACAGA 60.592 57.895 0.00 0.00 42.27 3.41
127 128 2.601398 CCTGAGCACACGCACACAG 61.601 63.158 0.00 0.00 42.27 3.66
128 129 2.022240 TACCTGAGCACACGCACACA 62.022 55.000 0.00 0.00 42.27 3.72
129 130 0.670546 ATACCTGAGCACACGCACAC 60.671 55.000 0.00 0.00 42.27 3.82
130 131 0.892063 TATACCTGAGCACACGCACA 59.108 50.000 0.00 0.00 42.27 4.57
131 132 1.560923 CTATACCTGAGCACACGCAC 58.439 55.000 0.00 0.00 42.27 5.34
132 133 0.179111 GCTATACCTGAGCACACGCA 60.179 55.000 0.00 0.00 42.27 5.24
133 134 0.876342 GGCTATACCTGAGCACACGC 60.876 60.000 0.00 0.00 41.98 5.34
134 135 3.274393 GGCTATACCTGAGCACACG 57.726 57.895 0.00 0.00 41.98 4.49
144 145 0.536006 CAAGCAGGGCAGGCTATACC 60.536 60.000 2.45 0.00 41.66 2.73
145 146 1.169034 GCAAGCAGGGCAGGCTATAC 61.169 60.000 2.45 0.00 41.66 1.47
146 147 1.149174 GCAAGCAGGGCAGGCTATA 59.851 57.895 2.45 0.00 41.66 1.31
147 148 2.123982 GCAAGCAGGGCAGGCTAT 60.124 61.111 2.45 0.00 41.66 2.97
148 149 2.430704 AAAGCAAGCAGGGCAGGCTA 62.431 55.000 2.45 0.00 41.66 3.93
149 150 2.430704 TAAAGCAAGCAGGGCAGGCT 62.431 55.000 0.00 0.00 45.15 4.58
150 151 1.325476 ATAAAGCAAGCAGGGCAGGC 61.325 55.000 0.00 0.00 0.00 4.85
151 152 2.057137 TATAAAGCAAGCAGGGCAGG 57.943 50.000 0.00 0.00 0.00 4.85
152 153 4.217118 CCTATTATAAAGCAAGCAGGGCAG 59.783 45.833 0.00 0.00 0.00 4.85
153 154 4.144297 CCTATTATAAAGCAAGCAGGGCA 58.856 43.478 0.00 0.00 0.00 5.36
154 155 4.145052 ACCTATTATAAAGCAAGCAGGGC 58.855 43.478 0.00 0.00 0.00 5.19
155 156 5.594317 ACAACCTATTATAAAGCAAGCAGGG 59.406 40.000 0.00 0.00 0.00 4.45
156 157 6.699575 ACAACCTATTATAAAGCAAGCAGG 57.300 37.500 0.00 0.00 0.00 4.85
157 158 8.028938 ACAAACAACCTATTATAAAGCAAGCAG 58.971 33.333 0.00 0.00 0.00 4.24
158 159 7.891561 ACAAACAACCTATTATAAAGCAAGCA 58.108 30.769 0.00 0.00 0.00 3.91
159 160 9.285770 GTACAAACAACCTATTATAAAGCAAGC 57.714 33.333 0.00 0.00 0.00 4.01
168 169 9.813446 GTAGCTGTAGTACAAACAACCTATTAT 57.187 33.333 4.21 0.00 0.00 1.28
169 170 9.028284 AGTAGCTGTAGTACAAACAACCTATTA 57.972 33.333 4.21 0.00 0.00 0.98
170 171 7.817962 CAGTAGCTGTAGTACAAACAACCTATT 59.182 37.037 4.21 0.00 0.00 1.73
171 172 7.321153 CAGTAGCTGTAGTACAAACAACCTAT 58.679 38.462 4.21 0.00 0.00 2.57
172 173 6.684686 CAGTAGCTGTAGTACAAACAACCTA 58.315 40.000 4.21 0.92 0.00 3.08
173 174 5.539048 CAGTAGCTGTAGTACAAACAACCT 58.461 41.667 4.21 1.80 0.00 3.50
174 175 4.151867 GCAGTAGCTGTAGTACAAACAACC 59.848 45.833 4.21 0.00 37.91 3.77
175 176 4.151867 GGCAGTAGCTGTAGTACAAACAAC 59.848 45.833 4.21 1.20 41.70 3.32
176 177 4.202274 TGGCAGTAGCTGTAGTACAAACAA 60.202 41.667 4.21 0.00 41.70 2.83
177 178 3.322541 TGGCAGTAGCTGTAGTACAAACA 59.677 43.478 4.21 0.00 41.70 2.83
178 179 3.921677 TGGCAGTAGCTGTAGTACAAAC 58.078 45.455 4.21 3.56 41.70 2.93
179 180 4.819105 ATGGCAGTAGCTGTAGTACAAA 57.181 40.909 4.21 0.00 41.70 2.83
180 181 4.466370 AGAATGGCAGTAGCTGTAGTACAA 59.534 41.667 4.21 0.00 41.70 2.41
181 182 4.023980 AGAATGGCAGTAGCTGTAGTACA 58.976 43.478 2.36 2.36 41.70 2.90
182 183 4.098044 TGAGAATGGCAGTAGCTGTAGTAC 59.902 45.833 0.00 0.00 41.70 2.73
183 184 4.278310 TGAGAATGGCAGTAGCTGTAGTA 58.722 43.478 0.00 0.00 41.70 1.82
184 185 3.099905 TGAGAATGGCAGTAGCTGTAGT 58.900 45.455 0.00 0.00 41.70 2.73
185 186 3.808466 TGAGAATGGCAGTAGCTGTAG 57.192 47.619 0.00 0.00 41.70 2.74
186 187 4.080919 ACATTGAGAATGGCAGTAGCTGTA 60.081 41.667 0.00 0.00 43.21 2.74
187 188 3.276857 CATTGAGAATGGCAGTAGCTGT 58.723 45.455 0.00 0.00 41.70 4.40
188 189 3.276857 ACATTGAGAATGGCAGTAGCTG 58.723 45.455 0.00 0.00 43.21 4.24
189 190 3.641434 ACATTGAGAATGGCAGTAGCT 57.359 42.857 0.00 0.00 43.21 3.32
190 191 3.691118 TCAACATTGAGAATGGCAGTAGC 59.309 43.478 0.00 0.00 43.21 3.58
203 204 2.037902 TCGTACAAGGGCTCAACATTGA 59.962 45.455 0.00 0.00 35.57 2.57
204 205 2.159627 GTCGTACAAGGGCTCAACATTG 59.840 50.000 0.00 0.00 0.00 2.82
205 206 2.224426 TGTCGTACAAGGGCTCAACATT 60.224 45.455 0.00 0.00 0.00 2.71
206 207 1.346395 TGTCGTACAAGGGCTCAACAT 59.654 47.619 0.00 0.00 0.00 2.71
207 208 0.753867 TGTCGTACAAGGGCTCAACA 59.246 50.000 0.00 0.00 0.00 3.33
208 209 1.145803 GTGTCGTACAAGGGCTCAAC 58.854 55.000 0.00 0.00 0.00 3.18
209 210 0.753867 TGTGTCGTACAAGGGCTCAA 59.246 50.000 0.00 0.00 36.06 3.02
210 211 0.973632 ATGTGTCGTACAAGGGCTCA 59.026 50.000 0.00 0.00 43.77 4.26
211 212 2.000447 GAATGTGTCGTACAAGGGCTC 59.000 52.381 0.00 0.00 43.77 4.70
212 213 1.346395 TGAATGTGTCGTACAAGGGCT 59.654 47.619 0.00 0.00 43.77 5.19
213 214 1.803334 TGAATGTGTCGTACAAGGGC 58.197 50.000 0.00 0.00 43.77 5.19
214 215 4.024893 GCATATGAATGTGTCGTACAAGGG 60.025 45.833 6.97 0.00 43.77 3.95
215 216 4.811024 AGCATATGAATGTGTCGTACAAGG 59.189 41.667 6.97 0.00 43.77 3.61
216 217 5.291858 ACAGCATATGAATGTGTCGTACAAG 59.708 40.000 6.97 0.00 43.77 3.16
217 218 5.175127 ACAGCATATGAATGTGTCGTACAA 58.825 37.500 6.97 0.00 43.77 2.41
218 219 4.754322 ACAGCATATGAATGTGTCGTACA 58.246 39.130 6.97 0.00 44.87 2.90
219 220 5.718649 AACAGCATATGAATGTGTCGTAC 57.281 39.130 6.97 0.00 35.38 3.67
220 221 6.423604 CCATAACAGCATATGAATGTGTCGTA 59.576 38.462 6.97 0.73 35.69 3.43
221 222 5.237127 CCATAACAGCATATGAATGTGTCGT 59.763 40.000 6.97 0.00 35.69 4.34
222 223 5.237127 ACCATAACAGCATATGAATGTGTCG 59.763 40.000 6.97 2.88 35.69 4.35
223 224 6.624352 ACCATAACAGCATATGAATGTGTC 57.376 37.500 6.97 0.00 35.69 3.67
224 225 7.408756 AAACCATAACAGCATATGAATGTGT 57.591 32.000 6.97 0.85 35.69 3.72
225 226 6.919662 GGAAACCATAACAGCATATGAATGTG 59.080 38.462 6.97 0.20 35.69 3.21
226 227 7.042797 GGAAACCATAACAGCATATGAATGT 57.957 36.000 6.97 7.53 35.69 2.71
246 247 8.983724 CGTTCAAGCATAAAAATTAAAGGGAAA 58.016 29.630 0.00 0.00 0.00 3.13
247 248 8.145122 ACGTTCAAGCATAAAAATTAAAGGGAA 58.855 29.630 0.00 0.00 0.00 3.97
248 249 7.596995 CACGTTCAAGCATAAAAATTAAAGGGA 59.403 33.333 0.00 0.00 0.00 4.20
249 250 7.621219 GCACGTTCAAGCATAAAAATTAAAGGG 60.621 37.037 0.00 0.00 0.00 3.95
250 251 7.226772 GCACGTTCAAGCATAAAAATTAAAGG 58.773 34.615 0.00 0.00 0.00 3.11
251 252 7.226772 GGCACGTTCAAGCATAAAAATTAAAG 58.773 34.615 0.00 0.00 0.00 1.85
252 253 6.146347 GGGCACGTTCAAGCATAAAAATTAAA 59.854 34.615 0.00 0.00 0.00 1.52
253 254 5.635700 GGGCACGTTCAAGCATAAAAATTAA 59.364 36.000 0.00 0.00 0.00 1.40
254 255 5.164954 GGGCACGTTCAAGCATAAAAATTA 58.835 37.500 0.00 0.00 0.00 1.40
255 256 3.993736 GGGCACGTTCAAGCATAAAAATT 59.006 39.130 0.00 0.00 0.00 1.82
256 257 3.584834 GGGCACGTTCAAGCATAAAAAT 58.415 40.909 0.00 0.00 0.00 1.82
257 258 2.288518 GGGGCACGTTCAAGCATAAAAA 60.289 45.455 0.00 0.00 0.00 1.94
258 259 1.271102 GGGGCACGTTCAAGCATAAAA 59.729 47.619 0.00 0.00 0.00 1.52
259 260 0.885196 GGGGCACGTTCAAGCATAAA 59.115 50.000 0.00 0.00 0.00 1.40
260 261 0.037590 AGGGGCACGTTCAAGCATAA 59.962 50.000 0.00 0.00 0.00 1.90
261 262 0.037590 AAGGGGCACGTTCAAGCATA 59.962 50.000 0.00 0.00 0.00 3.14
262 263 0.827507 AAAGGGGCACGTTCAAGCAT 60.828 50.000 0.00 0.00 0.00 3.79
263 264 1.040339 AAAAGGGGCACGTTCAAGCA 61.040 50.000 0.00 0.00 0.00 3.91
264 265 0.104120 AAAAAGGGGCACGTTCAAGC 59.896 50.000 0.00 0.00 0.00 4.01
280 281 7.721399 AGAGAATCAGGAGCTTTACAAGAAAAA 59.279 33.333 0.00 0.00 37.82 1.94
281 282 7.173907 CAGAGAATCAGGAGCTTTACAAGAAAA 59.826 37.037 0.00 0.00 37.82 2.29
282 283 6.652481 CAGAGAATCAGGAGCTTTACAAGAAA 59.348 38.462 0.00 0.00 37.82 2.52
283 284 6.169094 CAGAGAATCAGGAGCTTTACAAGAA 58.831 40.000 0.00 0.00 37.82 2.52
284 285 5.247110 ACAGAGAATCAGGAGCTTTACAAGA 59.753 40.000 0.00 0.00 37.82 3.02
285 286 5.486526 ACAGAGAATCAGGAGCTTTACAAG 58.513 41.667 0.00 0.00 37.82 3.16
286 287 5.489792 ACAGAGAATCAGGAGCTTTACAA 57.510 39.130 0.00 0.00 37.82 2.41
287 288 5.717178 ACTACAGAGAATCAGGAGCTTTACA 59.283 40.000 0.00 0.00 35.70 2.41
288 289 6.215495 ACTACAGAGAATCAGGAGCTTTAC 57.785 41.667 0.00 0.00 35.70 2.01
289 290 6.437477 TCAACTACAGAGAATCAGGAGCTTTA 59.563 38.462 0.00 0.00 35.70 1.85
290 291 5.247110 TCAACTACAGAGAATCAGGAGCTTT 59.753 40.000 0.00 0.00 35.70 3.51
291 292 4.774726 TCAACTACAGAGAATCAGGAGCTT 59.225 41.667 0.00 0.00 35.70 3.74
292 293 4.159506 GTCAACTACAGAGAATCAGGAGCT 59.840 45.833 0.00 0.00 35.70 4.09
299 300 7.010923 GTGAATGGATGTCAACTACAGAGAATC 59.989 40.741 0.00 0.00 42.70 2.52
318 319 6.738114 ACAACTTTAACATGTGAGTGAATGG 58.262 36.000 0.00 0.00 0.00 3.16
337 338 4.090786 GCAAACACGCAAAAGTTTACAACT 59.909 37.500 0.00 0.00 45.46 3.16
348 349 1.090728 TCTGTCTGCAAACACGCAAA 58.909 45.000 0.00 0.00 42.45 3.68
352 353 4.176271 TCATCTATCTGTCTGCAAACACG 58.824 43.478 0.00 0.00 0.00 4.49
353 354 5.174395 ACTCATCTATCTGTCTGCAAACAC 58.826 41.667 0.00 0.00 0.00 3.32
366 368 5.836821 TGAGGTGTGTGTACTCATCTATC 57.163 43.478 0.24 0.00 36.41 2.08
372 374 2.766313 GCAATGAGGTGTGTGTACTCA 58.234 47.619 0.00 0.00 44.44 3.41
390 392 1.807139 TCTGTGCTTTTATGCTCGCA 58.193 45.000 0.00 0.00 0.00 5.10
425 427 0.027586 ACGAAGCACGCAGTTTGTTC 59.972 50.000 0.00 0.00 41.61 3.18
426 428 0.450184 AACGAAGCACGCAGTTTGTT 59.550 45.000 0.00 0.00 41.61 2.83
428 430 2.376915 TAAACGAAGCACGCAGTTTG 57.623 45.000 15.55 0.39 41.61 2.93
429 431 2.916111 CATAAACGAAGCACGCAGTTT 58.084 42.857 12.44 12.44 41.61 2.66
434 436 0.165944 ACTGCATAAACGAAGCACGC 59.834 50.000 0.00 0.00 46.94 5.34
465 467 9.929180 GTACCATCTGAACATAAGCAGATTATA 57.071 33.333 0.00 0.00 46.65 0.98
466 468 8.654997 AGTACCATCTGAACATAAGCAGATTAT 58.345 33.333 0.00 0.00 46.65 1.28
467 469 8.023021 AGTACCATCTGAACATAAGCAGATTA 57.977 34.615 0.00 0.00 46.65 1.75
468 470 6.893583 AGTACCATCTGAACATAAGCAGATT 58.106 36.000 0.00 0.00 46.65 2.40
470 472 5.163405 GGAGTACCATCTGAACATAAGCAGA 60.163 44.000 0.00 0.00 44.43 4.26
471 473 5.053145 GGAGTACCATCTGAACATAAGCAG 58.947 45.833 0.00 0.00 35.97 4.24
472 474 4.141711 GGGAGTACCATCTGAACATAAGCA 60.142 45.833 0.00 0.00 39.85 3.91
473 475 4.101741 AGGGAGTACCATCTGAACATAAGC 59.898 45.833 0.00 0.00 43.89 3.09
474 476 5.848406 GAGGGAGTACCATCTGAACATAAG 58.152 45.833 0.00 0.00 42.82 1.73
475 477 5.871396 GAGGGAGTACCATCTGAACATAA 57.129 43.478 0.00 0.00 42.82 1.90
488 490 9.043079 GCATTTAAACAGTATAAGAGGGAGTAC 57.957 37.037 0.00 0.00 0.00 2.73
491 493 7.227512 CCTGCATTTAAACAGTATAAGAGGGAG 59.772 40.741 5.41 0.00 31.76 4.30
492 494 7.054124 CCTGCATTTAAACAGTATAAGAGGGA 58.946 38.462 5.41 0.00 31.76 4.20
503 505 4.566545 TCACACACCTGCATTTAAACAG 57.433 40.909 0.00 0.00 0.00 3.16
519 521 3.251571 GAGTTCACGGATACCTTCACAC 58.748 50.000 0.00 0.00 0.00 3.82
543 545 1.079819 TCACTCCGCTGCTAACTGC 60.080 57.895 0.00 0.00 43.25 4.40
550 552 1.156645 CCTAATGCTCACTCCGCTGC 61.157 60.000 0.00 0.00 0.00 5.25
564 566 1.929494 TCTTGGCATTGGGACCCTAAT 59.071 47.619 13.00 7.20 0.00 1.73
565 567 1.377690 TCTTGGCATTGGGACCCTAA 58.622 50.000 13.00 4.95 0.00 2.69
566 568 1.377690 TTCTTGGCATTGGGACCCTA 58.622 50.000 13.00 4.14 0.00 3.53
567 569 0.712380 ATTCTTGGCATTGGGACCCT 59.288 50.000 13.00 0.00 0.00 4.34
568 570 0.826062 CATTCTTGGCATTGGGACCC 59.174 55.000 2.45 2.45 0.00 4.46
571 573 2.694628 GCATACATTCTTGGCATTGGGA 59.305 45.455 0.00 0.00 0.00 4.37
572 574 2.224113 GGCATACATTCTTGGCATTGGG 60.224 50.000 0.00 0.00 38.23 4.12
573 575 2.431419 TGGCATACATTCTTGGCATTGG 59.569 45.455 0.00 0.00 42.67 3.16
574 576 3.804786 TGGCATACATTCTTGGCATTG 57.195 42.857 0.00 0.00 42.67 2.82
576 578 3.634504 TCTTGGCATACATTCTTGGCAT 58.365 40.909 0.00 0.00 46.18 4.40
577 579 3.084536 TCTTGGCATACATTCTTGGCA 57.915 42.857 0.00 0.00 45.41 4.92
578 580 3.731867 CGTTCTTGGCATACATTCTTGGC 60.732 47.826 0.00 0.00 38.77 4.52
579 581 3.731867 GCGTTCTTGGCATACATTCTTGG 60.732 47.826 0.00 0.00 0.00 3.61
581 583 3.081061 TGCGTTCTTGGCATACATTCTT 58.919 40.909 0.00 0.00 35.04 2.52
583 585 2.792542 GCTGCGTTCTTGGCATACATTC 60.793 50.000 0.00 0.00 40.09 2.67
585 587 0.734889 GCTGCGTTCTTGGCATACAT 59.265 50.000 0.00 0.00 40.09 2.29
599 677 1.821332 GGGATTTGGGAGAGCTGCG 60.821 63.158 0.00 0.00 0.00 5.18
607 685 5.379706 AACAAAAACATTGGGATTTGGGA 57.620 34.783 12.57 0.00 37.15 4.37
608 686 6.462552 AAAACAAAAACATTGGGATTTGGG 57.537 33.333 12.57 1.78 37.15 4.12
609 687 7.255416 CCCTAAAACAAAAACATTGGGATTTGG 60.255 37.037 12.57 2.18 37.15 3.28
610 688 7.284261 ACCCTAAAACAAAAACATTGGGATTTG 59.716 33.333 0.00 8.57 38.42 2.32
611 689 7.350382 ACCCTAAAACAAAAACATTGGGATTT 58.650 30.769 0.00 0.00 36.20 2.17
612 690 6.905736 ACCCTAAAACAAAAACATTGGGATT 58.094 32.000 0.00 0.00 36.20 3.01
613 691 6.465178 GGACCCTAAAACAAAAACATTGGGAT 60.465 38.462 0.00 0.00 36.20 3.85
614 692 5.163290 GGACCCTAAAACAAAAACATTGGGA 60.163 40.000 0.00 0.00 36.20 4.37
615 693 5.060506 GGACCCTAAAACAAAAACATTGGG 58.939 41.667 0.00 0.00 38.13 4.12
616 694 5.060506 GGGACCCTAAAACAAAAACATTGG 58.939 41.667 2.09 0.00 0.00 3.16
617 695 5.675538 TGGGACCCTAAAACAAAAACATTG 58.324 37.500 13.00 0.00 0.00 2.82
618 696 5.959583 TGGGACCCTAAAACAAAAACATT 57.040 34.783 13.00 0.00 0.00 2.71
619 697 5.959583 TTGGGACCCTAAAACAAAAACAT 57.040 34.783 13.00 0.00 0.00 2.71
620 698 5.757099 TTTGGGACCCTAAAACAAAAACA 57.243 34.783 13.00 0.00 0.00 2.83
621 699 5.761234 GGATTTGGGACCCTAAAACAAAAAC 59.239 40.000 13.00 0.72 35.06 2.43
622 700 5.163184 GGGATTTGGGACCCTAAAACAAAAA 60.163 40.000 13.00 1.24 42.56 1.94
623 701 4.348461 GGGATTTGGGACCCTAAAACAAAA 59.652 41.667 13.00 2.03 42.56 2.44
624 702 3.904965 GGGATTTGGGACCCTAAAACAAA 59.095 43.478 13.00 2.81 42.56 2.83
625 703 3.116707 TGGGATTTGGGACCCTAAAACAA 60.117 43.478 13.00 0.00 45.74 2.83
626 704 2.451273 TGGGATTTGGGACCCTAAAACA 59.549 45.455 13.00 8.44 45.74 2.83
627 705 3.178412 TGGGATTTGGGACCCTAAAAC 57.822 47.619 13.00 9.19 45.74 2.43
628 706 3.925261 TTGGGATTTGGGACCCTAAAA 57.075 42.857 13.00 5.20 45.74 1.52
629 707 3.078305 ACATTGGGATTTGGGACCCTAAA 59.922 43.478 13.00 10.97 45.74 1.85
630 708 2.657459 ACATTGGGATTTGGGACCCTAA 59.343 45.455 13.00 11.40 45.74 2.69
631 709 2.293246 ACATTGGGATTTGGGACCCTA 58.707 47.619 13.00 0.00 45.74 3.53
632 710 1.092549 ACATTGGGATTTGGGACCCT 58.907 50.000 13.00 0.00 45.74 4.34
633 711 1.554617 CAACATTGGGATTTGGGACCC 59.445 52.381 2.45 2.45 45.74 4.46
634 712 2.534990 TCAACATTGGGATTTGGGACC 58.465 47.619 0.00 0.00 0.00 4.46
635 713 3.768757 TGATCAACATTGGGATTTGGGAC 59.231 43.478 0.00 0.00 0.00 4.46
636 714 4.025360 CTGATCAACATTGGGATTTGGGA 58.975 43.478 0.00 0.00 0.00 4.37
637 715 3.133362 CCTGATCAACATTGGGATTTGGG 59.867 47.826 0.00 0.00 0.00 4.12
655 733 5.070446 CCTATACTTACACAATGCCTCCTGA 59.930 44.000 0.00 0.00 0.00 3.86
656 734 5.163301 ACCTATACTTACACAATGCCTCCTG 60.163 44.000 0.00 0.00 0.00 3.86
663 741 9.436957 ACTTCTTTCACCTATACTTACACAATG 57.563 33.333 0.00 0.00 0.00 2.82
664 742 9.436957 CACTTCTTTCACCTATACTTACACAAT 57.563 33.333 0.00 0.00 0.00 2.71
665 743 7.876068 CCACTTCTTTCACCTATACTTACACAA 59.124 37.037 0.00 0.00 0.00 3.33
666 744 7.383687 CCACTTCTTTCACCTATACTTACACA 58.616 38.462 0.00 0.00 0.00 3.72
667 745 6.313164 GCCACTTCTTTCACCTATACTTACAC 59.687 42.308 0.00 0.00 0.00 2.90
668 746 6.014070 TGCCACTTCTTTCACCTATACTTACA 60.014 38.462 0.00 0.00 0.00 2.41
669 747 6.403878 TGCCACTTCTTTCACCTATACTTAC 58.596 40.000 0.00 0.00 0.00 2.34
670 748 6.614694 TGCCACTTCTTTCACCTATACTTA 57.385 37.500 0.00 0.00 0.00 2.24
671 749 5.499004 TGCCACTTCTTTCACCTATACTT 57.501 39.130 0.00 0.00 0.00 2.24
672 750 5.499004 TTGCCACTTCTTTCACCTATACT 57.501 39.130 0.00 0.00 0.00 2.12
673 751 6.430000 TCTTTTGCCACTTCTTTCACCTATAC 59.570 38.462 0.00 0.00 0.00 1.47
674 752 6.539173 TCTTTTGCCACTTCTTTCACCTATA 58.461 36.000 0.00 0.00 0.00 1.31
675 753 5.385198 TCTTTTGCCACTTCTTTCACCTAT 58.615 37.500 0.00 0.00 0.00 2.57
676 754 4.787551 TCTTTTGCCACTTCTTTCACCTA 58.212 39.130 0.00 0.00 0.00 3.08
677 755 3.631250 TCTTTTGCCACTTCTTTCACCT 58.369 40.909 0.00 0.00 0.00 4.00
681 759 7.208225 AGTATTCTCTTTTGCCACTTCTTTC 57.792 36.000 0.00 0.00 0.00 2.62
684 762 6.515696 GCAAAGTATTCTCTTTTGCCACTTCT 60.516 38.462 9.37 0.00 35.77 2.85
731 1739 0.442699 CTTACGAAAAGGAGGCACGC 59.557 55.000 0.00 0.00 0.00 5.34
738 1746 3.503365 TCTCCCAGACTTACGAAAAGGA 58.497 45.455 0.00 0.00 0.00 3.36
739 1747 3.955650 TCTCCCAGACTTACGAAAAGG 57.044 47.619 0.00 0.00 0.00 3.11
740 1748 7.043325 CGATTTATCTCCCAGACTTACGAAAAG 60.043 40.741 0.00 0.00 0.00 2.27
752 1760 1.202533 ACGCCACGATTTATCTCCCAG 60.203 52.381 0.00 0.00 0.00 4.45
799 1824 1.967779 TCACTCATCCGTCCAAGAACA 59.032 47.619 0.00 0.00 0.00 3.18
810 1840 3.529533 CACTCCACTGAATCACTCATCC 58.470 50.000 0.00 0.00 32.14 3.51
855 1890 6.721571 TGAATACTACTGTACTTTGCAAGC 57.278 37.500 0.00 0.00 0.00 4.01
861 1896 9.209175 CTGCTTTCTTGAATACTACTGTACTTT 57.791 33.333 0.00 0.00 0.00 2.66
862 1897 8.585881 TCTGCTTTCTTGAATACTACTGTACTT 58.414 33.333 0.00 0.00 0.00 2.24
868 1903 6.026947 ACGTCTGCTTTCTTGAATACTACT 57.973 37.500 0.00 0.00 0.00 2.57
869 1904 5.862323 TGACGTCTGCTTTCTTGAATACTAC 59.138 40.000 17.92 0.00 0.00 2.73
870 1905 6.020971 TGACGTCTGCTTTCTTGAATACTA 57.979 37.500 17.92 0.00 0.00 1.82
871 1906 4.883083 TGACGTCTGCTTTCTTGAATACT 58.117 39.130 17.92 0.00 0.00 2.12
875 1910 3.727726 TGATGACGTCTGCTTTCTTGAA 58.272 40.909 17.92 0.00 0.00 2.69
880 1915 6.311445 TCTTCTTATTGATGACGTCTGCTTTC 59.689 38.462 17.92 6.60 0.00 2.62
890 1925 7.361286 GGGTGTGAAACTCTTCTTATTGATGAC 60.361 40.741 0.00 0.00 38.04 3.06
919 1955 1.098050 GTTTGCTGGGCGATGAGATT 58.902 50.000 0.00 0.00 0.00 2.40
921 1957 0.674581 CTGTTTGCTGGGCGATGAGA 60.675 55.000 0.00 0.00 0.00 3.27
922 1958 1.798735 CTGTTTGCTGGGCGATGAG 59.201 57.895 0.00 0.00 0.00 2.90
924 1960 1.940883 ATGCTGTTTGCTGGGCGATG 61.941 55.000 0.00 0.00 43.37 3.84
925 1961 1.660560 GATGCTGTTTGCTGGGCGAT 61.661 55.000 0.00 0.00 43.37 4.58
926 1962 2.282391 ATGCTGTTTGCTGGGCGA 60.282 55.556 0.00 0.00 43.37 5.54
929 1965 0.379669 GATCGATGCTGTTTGCTGGG 59.620 55.000 0.54 0.00 43.37 4.45
930 1966 0.027194 CGATCGATGCTGTTTGCTGG 59.973 55.000 10.26 0.00 43.37 4.85
931 1967 1.001624 TCGATCGATGCTGTTTGCTG 58.998 50.000 15.15 0.00 43.37 4.41
932 1968 1.284657 CTCGATCGATGCTGTTTGCT 58.715 50.000 19.78 0.00 43.37 3.91
943 1979 1.805539 CGGTTTGCTGCTCGATCGA 60.806 57.895 18.32 18.32 0.00 3.59
957 1993 2.603776 AGGAAGAGGTCGCCGGTT 60.604 61.111 1.90 0.00 0.00 4.44
965 2001 3.397906 GCAGGAGCAGGAAGAGGT 58.602 61.111 0.00 0.00 41.58 3.85
1020 2068 1.079127 GAGGATGGTGGACGTGGTG 60.079 63.158 0.00 0.00 0.00 4.17
1036 2084 2.499693 GGAAGAGAAGAAGGGTGGAGAG 59.500 54.545 0.00 0.00 0.00 3.20
1368 2425 1.191489 TGCGGGACTTGATGAGGTCA 61.191 55.000 0.00 0.00 34.49 4.02
1395 2452 1.972795 AGGAGGTTAACGTGGTAAGCA 59.027 47.619 5.36 0.00 34.58 3.91
1398 2455 2.827921 GAGGAGGAGGTTAACGTGGTAA 59.172 50.000 5.36 0.00 0.00 2.85
1512 2569 0.036732 ACACGTAGTACTCCCCGTCA 59.963 55.000 0.00 0.00 41.61 4.35
1530 2587 0.685097 TGAGCCTGAGGTGGTTGTAC 59.315 55.000 0.00 0.00 0.00 2.90
1554 2611 2.260844 TCTTCTGCTTGTTGACCAGG 57.739 50.000 0.00 0.00 0.00 4.45
1770 2839 1.296715 GACCACAGAAGGGTCGCAT 59.703 57.895 0.00 0.00 44.80 4.73
2115 3187 4.429212 CCGTCGCCGACCATCACA 62.429 66.667 12.26 0.00 35.63 3.58
2334 3406 2.434359 GGGAACACGAAGGAGGCG 60.434 66.667 0.00 0.00 0.00 5.52
2856 3928 2.943345 GCTGTGCAGGTCGAACACG 61.943 63.158 1.87 0.00 37.11 4.49
2966 4038 1.355066 GACGAAGCAGAAAGAGGCGG 61.355 60.000 0.00 0.00 34.54 6.13
2973 4045 1.618837 AGGCAGTAGACGAAGCAGAAA 59.381 47.619 0.00 0.00 0.00 2.52
2990 4062 0.390472 CTTCACGGTGGAGAAGAGGC 60.390 60.000 11.12 0.00 41.63 4.70
3062 4134 3.215151 TGAAATGTTACCGTCAGGCAAA 58.785 40.909 0.00 0.00 42.76 3.68
3109 4181 9.875675 GCTTATTATCTTTGCTTCAATGAGTAG 57.124 33.333 0.00 0.00 32.54 2.57
3117 4189 4.889409 CCCCTGCTTATTATCTTTGCTTCA 59.111 41.667 0.00 0.00 0.00 3.02
3134 4206 4.081322 TCGAATAGGAATTTACCCCTGC 57.919 45.455 0.00 0.00 34.11 4.85
3212 4284 5.006455 GTGATCATGCTGTATCTGTTGTGAG 59.994 44.000 0.00 0.00 0.00 3.51
3505 5237 3.338249 CCTTCGAACACTTCATCCACAT 58.662 45.455 0.00 0.00 0.00 3.21
3534 5266 9.406113 CCTCTCCTTATTCTTCTCAAATCAATT 57.594 33.333 0.00 0.00 0.00 2.32
3541 5275 3.133003 CCGCCTCTCCTTATTCTTCTCAA 59.867 47.826 0.00 0.00 0.00 3.02
3563 5297 4.218417 TGGAAATCCTAAAGCTTGAACTGC 59.782 41.667 0.00 0.00 36.82 4.40
3576 5310 1.377690 TGGGTGCCTTGGAAATCCTA 58.622 50.000 0.44 0.00 36.82 2.94
3577 5311 0.486879 TTGGGTGCCTTGGAAATCCT 59.513 50.000 0.44 0.00 36.82 3.24
3583 5317 2.757894 TTTACTTTGGGTGCCTTGGA 57.242 45.000 0.00 0.00 0.00 3.53
3612 5346 4.333926 CCCTAAACTTAGATGCTTGAGTGC 59.666 45.833 0.00 0.00 32.47 4.40
3789 5526 9.715121 AGTGCAAAGAACATTCAATAAATCAAT 57.285 25.926 0.00 0.00 0.00 2.57
3896 5638 7.118680 ACAAATAACGGTGTTCGAAATGTAGAT 59.881 33.333 0.00 0.00 42.43 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.