Multiple sequence alignment - TraesCS2A01G496700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G496700 chr2A 100.000 3510 0 0 1 3510 727919770 727916261 0.000000e+00 6482.0
1 TraesCS2A01G496700 chr2A 99.772 438 1 0 1370 1807 419652339 419652776 0.000000e+00 804.0
2 TraesCS2A01G496700 chr2A 81.020 490 75 16 2002 2482 727244905 727244425 1.190000e-99 374.0
3 TraesCS2A01G496700 chr2A 86.029 136 10 7 3011 3141 727916629 727916498 1.700000e-28 137.0
4 TraesCS2A01G496700 chr2A 86.029 136 10 7 3142 3273 727916760 727916630 1.700000e-28 137.0
5 TraesCS2A01G496700 chr2B 95.033 1530 65 7 1104 2624 719294360 719292833 0.000000e+00 2394.0
6 TraesCS2A01G496700 chr2B 84.703 706 96 10 2 700 719433724 719433024 0.000000e+00 695.0
7 TraesCS2A01G496700 chr2B 79.550 489 84 14 2002 2482 718969525 718969045 5.610000e-88 335.0
8 TraesCS2A01G496700 chr7D 89.077 1300 111 20 1198 2483 416238636 416237354 0.000000e+00 1585.0
9 TraesCS2A01G496700 chr7D 84.906 689 86 11 2 678 257511437 257512119 0.000000e+00 680.0
10 TraesCS2A01G496700 chr7A 88.897 1297 119 17 1198 2483 478503543 478502261 0.000000e+00 1574.0
11 TraesCS2A01G496700 chr7A 80.081 246 40 7 434 671 48435950 48436194 1.300000e-39 174.0
12 TraesCS2A01G496700 chr3D 97.079 890 18 8 2623 3510 564633889 564633006 0.000000e+00 1493.0
13 TraesCS2A01G496700 chr3D 87.184 593 69 7 2 590 182049715 182050304 0.000000e+00 667.0
14 TraesCS2A01G496700 chr3D 88.148 135 7 8 3011 3141 564633372 564633243 6.070000e-33 152.0
15 TraesCS2A01G496700 chr3D 87.500 136 9 6 3141 3273 564633503 564633373 2.180000e-32 150.0
16 TraesCS2A01G496700 chr7B 87.452 1315 114 27 1198 2483 431663792 431662500 0.000000e+00 1467.0
17 TraesCS2A01G496700 chr1B 90.397 906 52 24 2624 3510 662013457 662012568 0.000000e+00 1158.0
18 TraesCS2A01G496700 chr1B 93.130 131 5 4 3011 3141 662012931 662012805 4.630000e-44 189.0
19 TraesCS2A01G496700 chr4B 99.543 438 2 0 1370 1807 612329482 612329919 0.000000e+00 798.0
20 TraesCS2A01G496700 chr6A 84.615 689 93 8 2 679 8866303 8866989 0.000000e+00 673.0
21 TraesCS2A01G496700 chr6B 84.402 686 89 12 2 676 681079777 681080455 0.000000e+00 658.0
22 TraesCS2A01G496700 chr6D 83.895 683 97 8 11 682 18193282 18192602 1.060000e-179 640.0
23 TraesCS2A01G496700 chr3B 86.054 588 74 7 1 582 260319081 260319666 2.970000e-175 625.0
24 TraesCS2A01G496700 chr5D 85.618 591 81 4 2 590 216159926 216159338 4.980000e-173 617.0
25 TraesCS2A01G496700 chr4D 83.043 690 98 14 4 678 437940092 437939407 3.000000e-170 608.0
26 TraesCS2A01G496700 chr2D 81.224 490 74 16 2002 2482 592791027 592790547 2.560000e-101 379.0
27 TraesCS2A01G496700 chr3A 92.727 55 4 0 624 678 121493660 121493606 2.900000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G496700 chr2A 727916261 727919770 3509 True 2252.000000 6482 90.6860 1 3510 3 chr2A.!!$R2 3509
1 TraesCS2A01G496700 chr2B 719292833 719294360 1527 True 2394.000000 2394 95.0330 1104 2624 1 chr2B.!!$R2 1520
2 TraesCS2A01G496700 chr2B 719433024 719433724 700 True 695.000000 695 84.7030 2 700 1 chr2B.!!$R3 698
3 TraesCS2A01G496700 chr7D 416237354 416238636 1282 True 1585.000000 1585 89.0770 1198 2483 1 chr7D.!!$R1 1285
4 TraesCS2A01G496700 chr7D 257511437 257512119 682 False 680.000000 680 84.9060 2 678 1 chr7D.!!$F1 676
5 TraesCS2A01G496700 chr7A 478502261 478503543 1282 True 1574.000000 1574 88.8970 1198 2483 1 chr7A.!!$R1 1285
6 TraesCS2A01G496700 chr3D 182049715 182050304 589 False 667.000000 667 87.1840 2 590 1 chr3D.!!$F1 588
7 TraesCS2A01G496700 chr3D 564633006 564633889 883 True 598.333333 1493 90.9090 2623 3510 3 chr3D.!!$R1 887
8 TraesCS2A01G496700 chr7B 431662500 431663792 1292 True 1467.000000 1467 87.4520 1198 2483 1 chr7B.!!$R1 1285
9 TraesCS2A01G496700 chr1B 662012568 662013457 889 True 673.500000 1158 91.7635 2624 3510 2 chr1B.!!$R1 886
10 TraesCS2A01G496700 chr6A 8866303 8866989 686 False 673.000000 673 84.6150 2 679 1 chr6A.!!$F1 677
11 TraesCS2A01G496700 chr6B 681079777 681080455 678 False 658.000000 658 84.4020 2 676 1 chr6B.!!$F1 674
12 TraesCS2A01G496700 chr6D 18192602 18193282 680 True 640.000000 640 83.8950 11 682 1 chr6D.!!$R1 671
13 TraesCS2A01G496700 chr3B 260319081 260319666 585 False 625.000000 625 86.0540 1 582 1 chr3B.!!$F1 581
14 TraesCS2A01G496700 chr5D 216159338 216159926 588 True 617.000000 617 85.6180 2 590 1 chr5D.!!$R1 588
15 TraesCS2A01G496700 chr4D 437939407 437940092 685 True 608.000000 608 83.0430 4 678 1 chr4D.!!$R1 674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
255 260 0.384309 CAAGGGCTCGTATGACGCTA 59.616 55.0 0.00 0.0 42.21 4.26 F
1064 1086 0.036388 TGCTCGGCGAAGAAAGGAAT 60.036 50.0 12.13 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1798 1848 0.179097 GCTACGCCAGAGGGAAGAAG 60.179 60.0 0.0 0.0 35.59 2.85 R
2974 3047 0.178984 GGGGAAGGAAAAACGTGGGA 60.179 55.0 0.0 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 83 8.052748 AGTTAGTGCATAATGAAAAGGTCCATA 58.947 33.333 0.00 0.00 0.00 2.74
129 132 6.801539 TCAGAACTTTGGTTGCTAACTATG 57.198 37.500 0.00 0.00 35.58 2.23
163 166 0.452987 GCAAAGGCGATGATCAAGCA 59.547 50.000 22.49 0.00 0.00 3.91
205 208 5.365021 AGGAGCAACTATGTGAAGCTAAT 57.635 39.130 0.00 0.00 35.36 1.73
255 260 0.384309 CAAGGGCTCGTATGACGCTA 59.616 55.000 0.00 0.00 42.21 4.26
259 264 1.666311 GGGCTCGTATGACGCTATCAC 60.666 57.143 0.00 0.00 41.24 3.06
261 266 1.951792 CTCGTATGACGCTATCACCG 58.048 55.000 0.00 0.00 41.24 4.94
276 281 2.278857 CCGGAGACTCGAATGGCG 60.279 66.667 0.00 0.00 42.69 5.69
342 347 3.078196 TTATGGCCGAGGCACCGA 61.078 61.111 16.65 0.00 41.84 4.69
360 365 1.717645 CGACTTTACGGTTTGGTCTCG 59.282 52.381 0.00 0.00 0.00 4.04
463 469 3.623060 GTCGCTCTTTCAATCTATTGGCA 59.377 43.478 3.00 0.00 38.30 4.92
536 547 2.996249 TGAGCATGCTCCTAGAAAGG 57.004 50.000 37.92 0.00 45.21 3.11
572 586 6.542370 GCTCATGATTTAGCCAAACTAGGTAA 59.458 38.462 0.00 0.00 32.40 2.85
584 598 6.936335 GCCAAACTAGGTAAAAGTAAGGTGTA 59.064 38.462 0.00 0.00 0.00 2.90
592 606 5.163824 GGTAAAAGTAAGGTGTATGCGGTTC 60.164 44.000 0.00 0.00 0.00 3.62
594 616 1.208776 AGTAAGGTGTATGCGGTTCCC 59.791 52.381 0.00 0.00 0.00 3.97
596 618 0.696501 AAGGTGTATGCGGTTCCCTT 59.303 50.000 0.00 0.00 0.00 3.95
602 624 1.202099 TATGCGGTTCCCTTCACCCA 61.202 55.000 0.00 0.00 0.00 4.51
603 625 2.359975 GCGGTTCCCTTCACCCAG 60.360 66.667 0.00 0.00 0.00 4.45
617 639 5.996513 CCTTCACCCAGAGAGATTATTGATG 59.003 44.000 0.00 0.00 0.00 3.07
620 642 5.131642 TCACCCAGAGAGATTATTGATGCTT 59.868 40.000 0.00 0.00 0.00 3.91
622 644 6.994496 CACCCAGAGAGATTATTGATGCTTTA 59.006 38.462 0.00 0.00 0.00 1.85
695 717 5.476091 AAAAATAGTCGCCCATTTCCAAA 57.524 34.783 0.00 0.00 0.00 3.28
696 718 4.718940 AAATAGTCGCCCATTTCCAAAG 57.281 40.909 0.00 0.00 0.00 2.77
697 719 2.871096 TAGTCGCCCATTTCCAAAGT 57.129 45.000 0.00 0.00 0.00 2.66
698 720 1.534729 AGTCGCCCATTTCCAAAGTC 58.465 50.000 0.00 0.00 0.00 3.01
699 721 1.073923 AGTCGCCCATTTCCAAAGTCT 59.926 47.619 0.00 0.00 0.00 3.24
700 722 1.200020 GTCGCCCATTTCCAAAGTCTG 59.800 52.381 0.00 0.00 0.00 3.51
701 723 1.073125 TCGCCCATTTCCAAAGTCTGA 59.927 47.619 0.00 0.00 0.00 3.27
702 724 1.470098 CGCCCATTTCCAAAGTCTGAG 59.530 52.381 0.00 0.00 0.00 3.35
703 725 1.203287 GCCCATTTCCAAAGTCTGAGC 59.797 52.381 0.00 0.00 0.00 4.26
704 726 2.517959 CCCATTTCCAAAGTCTGAGCA 58.482 47.619 0.00 0.00 0.00 4.26
705 727 2.490903 CCCATTTCCAAAGTCTGAGCAG 59.509 50.000 0.00 0.00 0.00 4.24
706 728 3.415212 CCATTTCCAAAGTCTGAGCAGA 58.585 45.455 0.00 0.00 34.56 4.26
707 729 4.015084 CCATTTCCAAAGTCTGAGCAGAT 58.985 43.478 3.19 0.00 39.97 2.90
708 730 4.142447 CCATTTCCAAAGTCTGAGCAGATG 60.142 45.833 3.19 0.00 39.97 2.90
709 731 3.777106 TTCCAAAGTCTGAGCAGATGT 57.223 42.857 3.19 0.00 39.97 3.06
710 732 3.325293 TCCAAAGTCTGAGCAGATGTC 57.675 47.619 3.19 0.00 39.97 3.06
711 733 2.634453 TCCAAAGTCTGAGCAGATGTCA 59.366 45.455 3.19 0.00 39.97 3.58
712 734 3.071457 TCCAAAGTCTGAGCAGATGTCAA 59.929 43.478 3.19 0.00 39.97 3.18
713 735 3.817084 CCAAAGTCTGAGCAGATGTCAAA 59.183 43.478 3.19 0.00 39.97 2.69
714 736 4.083431 CCAAAGTCTGAGCAGATGTCAAAG 60.083 45.833 3.19 0.00 39.97 2.77
715 737 4.613925 AAGTCTGAGCAGATGTCAAAGA 57.386 40.909 3.19 0.00 39.97 2.52
716 738 4.613925 AGTCTGAGCAGATGTCAAAGAA 57.386 40.909 3.19 0.00 39.97 2.52
717 739 4.314121 AGTCTGAGCAGATGTCAAAGAAC 58.686 43.478 3.19 0.00 39.97 3.01
718 740 4.040217 AGTCTGAGCAGATGTCAAAGAACT 59.960 41.667 3.19 0.00 39.97 3.01
719 741 4.388469 GTCTGAGCAGATGTCAAAGAACTC 59.612 45.833 3.19 0.00 39.97 3.01
720 742 4.039609 TCTGAGCAGATGTCAAAGAACTCA 59.960 41.667 0.00 0.00 31.41 3.41
721 743 4.707105 TGAGCAGATGTCAAAGAACTCAA 58.293 39.130 0.00 0.00 30.46 3.02
722 744 4.753610 TGAGCAGATGTCAAAGAACTCAAG 59.246 41.667 0.00 0.00 30.46 3.02
723 745 4.070716 AGCAGATGTCAAAGAACTCAAGG 58.929 43.478 0.00 0.00 0.00 3.61
724 746 3.817647 GCAGATGTCAAAGAACTCAAGGT 59.182 43.478 0.00 0.00 0.00 3.50
725 747 4.997395 GCAGATGTCAAAGAACTCAAGGTA 59.003 41.667 0.00 0.00 0.00 3.08
726 748 5.645497 GCAGATGTCAAAGAACTCAAGGTAT 59.355 40.000 0.00 0.00 0.00 2.73
727 749 6.818644 GCAGATGTCAAAGAACTCAAGGTATA 59.181 38.462 0.00 0.00 0.00 1.47
728 750 7.497249 GCAGATGTCAAAGAACTCAAGGTATAT 59.503 37.037 0.00 0.00 0.00 0.86
739 761 9.373450 AGAACTCAAGGTATATATCATGACAGT 57.627 33.333 0.00 0.00 0.00 3.55
740 762 9.988815 GAACTCAAGGTATATATCATGACAGTT 57.011 33.333 0.00 5.87 0.00 3.16
759 781 9.582431 TGACAGTTACTTGTATTAGTATCTTGC 57.418 33.333 0.00 0.00 31.48 4.01
760 782 8.943909 ACAGTTACTTGTATTAGTATCTTGCC 57.056 34.615 0.00 0.00 31.48 4.52
761 783 8.759782 ACAGTTACTTGTATTAGTATCTTGCCT 58.240 33.333 0.00 0.00 31.48 4.75
762 784 9.035607 CAGTTACTTGTATTAGTATCTTGCCTG 57.964 37.037 0.00 0.00 31.48 4.85
763 785 7.711339 AGTTACTTGTATTAGTATCTTGCCTGC 59.289 37.037 0.00 0.00 30.26 4.85
764 786 5.050490 ACTTGTATTAGTATCTTGCCTGCG 58.950 41.667 0.00 0.00 0.00 5.18
765 787 3.990092 TGTATTAGTATCTTGCCTGCGG 58.010 45.455 0.00 0.00 0.00 5.69
766 788 3.386726 TGTATTAGTATCTTGCCTGCGGT 59.613 43.478 0.00 0.00 0.00 5.68
767 789 3.560636 ATTAGTATCTTGCCTGCGGTT 57.439 42.857 0.00 0.00 0.00 4.44
768 790 2.309528 TAGTATCTTGCCTGCGGTTG 57.690 50.000 0.00 0.00 0.00 3.77
769 791 1.026718 AGTATCTTGCCTGCGGTTGC 61.027 55.000 0.00 0.00 43.20 4.17
770 792 1.748879 TATCTTGCCTGCGGTTGCC 60.749 57.895 0.00 0.00 41.78 4.52
786 808 2.359107 CCGCTGCAGGCAAGAGAA 60.359 61.111 17.12 0.00 41.91 2.87
787 809 2.684843 CCGCTGCAGGCAAGAGAAC 61.685 63.158 17.12 0.00 41.91 3.01
788 810 1.670406 CGCTGCAGGCAAGAGAACT 60.670 57.895 17.12 0.00 41.91 3.01
789 811 1.633852 CGCTGCAGGCAAGAGAACTC 61.634 60.000 17.12 0.00 41.91 3.01
790 812 1.633852 GCTGCAGGCAAGAGAACTCG 61.634 60.000 17.12 0.00 41.35 4.18
791 813 1.633852 CTGCAGGCAAGAGAACTCGC 61.634 60.000 5.57 0.00 34.09 5.03
792 814 1.669115 GCAGGCAAGAGAACTCGCA 60.669 57.895 0.00 0.00 34.09 5.10
793 815 1.023513 GCAGGCAAGAGAACTCGCAT 61.024 55.000 0.00 0.00 34.09 4.73
794 816 1.740380 GCAGGCAAGAGAACTCGCATA 60.740 52.381 0.00 0.00 34.09 3.14
795 817 2.200067 CAGGCAAGAGAACTCGCATAG 58.800 52.381 0.00 0.00 34.09 2.23
796 818 1.827969 AGGCAAGAGAACTCGCATAGT 59.172 47.619 0.00 0.00 41.49 2.12
797 819 2.159170 AGGCAAGAGAACTCGCATAGTC 60.159 50.000 0.00 0.00 37.50 2.59
798 820 1.849219 GCAAGAGAACTCGCATAGTCG 59.151 52.381 0.00 0.00 37.50 4.18
799 821 2.732597 GCAAGAGAACTCGCATAGTCGT 60.733 50.000 0.00 0.00 37.50 4.34
800 822 3.487042 GCAAGAGAACTCGCATAGTCGTA 60.487 47.826 0.00 0.00 37.50 3.43
801 823 4.790123 GCAAGAGAACTCGCATAGTCGTAT 60.790 45.833 0.00 0.00 37.50 3.06
802 824 4.475763 AGAGAACTCGCATAGTCGTATG 57.524 45.455 0.00 0.00 37.50 2.39
810 832 2.732412 CATAGTCGTATGCAGGGGAG 57.268 55.000 0.00 0.00 29.82 4.30
811 833 1.273606 CATAGTCGTATGCAGGGGAGG 59.726 57.143 0.00 0.00 29.82 4.30
812 834 0.469331 TAGTCGTATGCAGGGGAGGG 60.469 60.000 0.00 0.00 0.00 4.30
813 835 3.161450 TCGTATGCAGGGGAGGGC 61.161 66.667 0.00 0.00 0.00 5.19
814 836 4.609018 CGTATGCAGGGGAGGGCG 62.609 72.222 0.00 0.00 0.00 6.13
815 837 4.937431 GTATGCAGGGGAGGGCGC 62.937 72.222 0.00 0.00 0.00 6.53
820 842 3.399181 CAGGGGAGGGCGCTTGTA 61.399 66.667 7.64 0.00 30.78 2.41
821 843 3.400054 AGGGGAGGGCGCTTGTAC 61.400 66.667 7.64 0.00 0.00 2.90
822 844 4.832608 GGGGAGGGCGCTTGTACG 62.833 72.222 7.64 0.00 0.00 3.67
823 845 4.078516 GGGAGGGCGCTTGTACGT 62.079 66.667 7.64 0.00 34.88 3.57
824 846 2.713967 GGGAGGGCGCTTGTACGTA 61.714 63.158 7.64 0.00 34.88 3.57
825 847 1.226888 GGAGGGCGCTTGTACGTAG 60.227 63.158 7.64 0.00 34.88 3.51
826 848 1.877165 GAGGGCGCTTGTACGTAGC 60.877 63.158 7.64 9.17 34.88 3.58
827 849 2.125832 GGGCGCTTGTACGTAGCA 60.126 61.111 7.64 2.18 38.55 3.49
828 850 2.450345 GGGCGCTTGTACGTAGCAC 61.450 63.158 7.64 9.20 38.55 4.40
829 851 1.735198 GGCGCTTGTACGTAGCACA 60.735 57.895 7.64 0.00 38.55 4.57
830 852 1.683790 GGCGCTTGTACGTAGCACAG 61.684 60.000 7.64 5.19 38.55 3.66
831 853 1.007336 GCGCTTGTACGTAGCACAGT 61.007 55.000 16.93 0.00 38.55 3.55
832 854 1.730121 GCGCTTGTACGTAGCACAGTA 60.730 52.381 16.93 0.00 38.55 2.74
833 855 1.909532 CGCTTGTACGTAGCACAGTAC 59.090 52.381 16.93 8.17 42.43 2.73
846 868 9.406828 ACGTAGCACAGTACATATTATATGTTG 57.593 33.333 20.98 16.42 33.76 3.33
847 869 8.373256 CGTAGCACAGTACATATTATATGTTGC 58.627 37.037 22.25 22.25 34.21 4.17
848 870 7.351414 AGCACAGTACATATTATATGTTGCG 57.649 36.000 20.98 10.75 37.22 4.85
849 871 6.368791 AGCACAGTACATATTATATGTTGCGG 59.631 38.462 20.98 16.40 37.22 5.69
850 872 6.147164 GCACAGTACATATTATATGTTGCGGT 59.853 38.462 20.98 16.90 33.76 5.68
851 873 7.621426 GCACAGTACATATTATATGTTGCGGTC 60.621 40.741 20.98 11.73 33.76 4.79
852 874 7.383843 CACAGTACATATTATATGTTGCGGTCA 59.616 37.037 20.98 1.00 33.76 4.02
853 875 7.929245 ACAGTACATATTATATGTTGCGGTCAA 59.071 33.333 20.98 0.32 33.76 3.18
860 882 4.771127 GTTGCGGTCAACTCTGGA 57.229 55.556 7.68 0.00 46.81 3.86
861 883 2.533318 GTTGCGGTCAACTCTGGAG 58.467 57.895 7.68 0.00 46.81 3.86
862 884 0.951040 GTTGCGGTCAACTCTGGAGG 60.951 60.000 2.58 0.00 46.81 4.30
863 885 1.118965 TTGCGGTCAACTCTGGAGGA 61.119 55.000 2.58 0.00 0.00 3.71
864 886 1.216710 GCGGTCAACTCTGGAGGAG 59.783 63.158 2.58 0.00 46.87 3.69
865 887 1.216710 CGGTCAACTCTGGAGGAGC 59.783 63.158 2.58 0.42 45.48 4.70
866 888 1.536073 CGGTCAACTCTGGAGGAGCA 61.536 60.000 2.58 0.00 45.48 4.26
867 889 0.687354 GGTCAACTCTGGAGGAGCAA 59.313 55.000 2.58 0.00 45.48 3.91
868 890 1.280421 GGTCAACTCTGGAGGAGCAAT 59.720 52.381 2.58 0.00 45.48 3.56
869 891 2.501723 GGTCAACTCTGGAGGAGCAATA 59.498 50.000 2.58 0.00 45.48 1.90
870 892 3.526534 GTCAACTCTGGAGGAGCAATAC 58.473 50.000 2.58 0.00 45.48 1.89
871 893 3.055819 GTCAACTCTGGAGGAGCAATACA 60.056 47.826 2.58 0.00 45.48 2.29
872 894 3.582647 TCAACTCTGGAGGAGCAATACAA 59.417 43.478 2.58 0.00 45.48 2.41
873 895 4.225942 TCAACTCTGGAGGAGCAATACAAT 59.774 41.667 2.58 0.00 45.48 2.71
874 896 5.425217 TCAACTCTGGAGGAGCAATACAATA 59.575 40.000 2.58 0.00 45.48 1.90
875 897 5.283457 ACTCTGGAGGAGCAATACAATAC 57.717 43.478 2.58 0.00 45.48 1.89
876 898 4.716784 ACTCTGGAGGAGCAATACAATACA 59.283 41.667 2.58 0.00 45.48 2.29
877 899 5.163364 ACTCTGGAGGAGCAATACAATACAG 60.163 44.000 2.58 0.00 45.48 2.74
878 900 4.962362 TCTGGAGGAGCAATACAATACAGA 59.038 41.667 0.00 0.00 0.00 3.41
879 901 5.069648 TCTGGAGGAGCAATACAATACAGAG 59.930 44.000 0.00 0.00 0.00 3.35
880 902 4.061596 GGAGGAGCAATACAATACAGAGC 58.938 47.826 0.00 0.00 0.00 4.09
881 903 3.722147 AGGAGCAATACAATACAGAGCG 58.278 45.455 0.00 0.00 0.00 5.03
882 904 3.384789 AGGAGCAATACAATACAGAGCGA 59.615 43.478 0.00 0.00 0.00 4.93
883 905 3.491267 GGAGCAATACAATACAGAGCGAC 59.509 47.826 0.00 0.00 0.00 5.19
884 906 4.112634 GAGCAATACAATACAGAGCGACA 58.887 43.478 0.00 0.00 0.00 4.35
885 907 4.697514 AGCAATACAATACAGAGCGACAT 58.302 39.130 0.00 0.00 0.00 3.06
886 908 4.509230 AGCAATACAATACAGAGCGACATG 59.491 41.667 0.00 0.00 0.00 3.21
887 909 4.507756 GCAATACAATACAGAGCGACATGA 59.492 41.667 0.00 0.00 0.00 3.07
888 910 5.332883 GCAATACAATACAGAGCGACATGAG 60.333 44.000 0.00 0.00 0.00 2.90
889 911 2.544685 ACAATACAGAGCGACATGAGC 58.455 47.619 0.00 4.59 0.00 4.26
891 913 3.193263 CAATACAGAGCGACATGAGCTT 58.807 45.455 18.29 8.30 46.13 3.74
892 914 2.284263 TACAGAGCGACATGAGCTTG 57.716 50.000 18.29 18.11 46.13 4.01
893 915 0.390866 ACAGAGCGACATGAGCTTGG 60.391 55.000 18.29 15.57 46.13 3.61
894 916 1.449246 AGAGCGACATGAGCTTGGC 60.449 57.895 18.29 8.71 46.13 4.52
895 917 1.742880 GAGCGACATGAGCTTGGCA 60.743 57.895 18.29 0.00 46.13 4.92
896 918 1.703438 GAGCGACATGAGCTTGGCAG 61.703 60.000 18.29 0.00 46.13 4.85
897 919 2.758089 GCGACATGAGCTTGGCAGG 61.758 63.158 0.00 0.00 0.00 4.85
898 920 1.078918 CGACATGAGCTTGGCAGGA 60.079 57.895 0.00 0.00 0.00 3.86
899 921 0.674581 CGACATGAGCTTGGCAGGAA 60.675 55.000 0.00 0.00 0.00 3.36
900 922 1.093159 GACATGAGCTTGGCAGGAAG 58.907 55.000 0.00 0.00 0.00 3.46
901 923 0.694771 ACATGAGCTTGGCAGGAAGA 59.305 50.000 0.00 0.00 0.00 2.87
902 924 1.284198 ACATGAGCTTGGCAGGAAGAT 59.716 47.619 0.00 0.00 0.00 2.40
903 925 1.948145 CATGAGCTTGGCAGGAAGATC 59.052 52.381 0.00 0.00 38.58 2.75
904 926 1.283347 TGAGCTTGGCAGGAAGATCT 58.717 50.000 0.00 0.00 38.83 2.75
905 927 1.209019 TGAGCTTGGCAGGAAGATCTC 59.791 52.381 0.00 0.00 38.83 2.75
906 928 0.545646 AGCTTGGCAGGAAGATCTCC 59.454 55.000 0.00 0.00 45.81 3.71
915 937 2.517650 GGAAGATCTCCATGGTCGTC 57.482 55.000 12.58 9.73 44.67 4.20
916 938 2.035632 GGAAGATCTCCATGGTCGTCT 58.964 52.381 12.58 10.33 44.67 4.18
917 939 2.035321 GGAAGATCTCCATGGTCGTCTC 59.965 54.545 12.58 3.28 44.67 3.36
918 940 2.746279 AGATCTCCATGGTCGTCTCT 57.254 50.000 12.58 5.54 0.00 3.10
919 941 3.025322 AGATCTCCATGGTCGTCTCTT 57.975 47.619 12.58 0.00 0.00 2.85
920 942 2.692557 AGATCTCCATGGTCGTCTCTTG 59.307 50.000 12.58 0.00 0.00 3.02
921 943 1.186200 TCTCCATGGTCGTCTCTTGG 58.814 55.000 12.58 0.00 0.00 3.61
922 944 0.460987 CTCCATGGTCGTCTCTTGGC 60.461 60.000 12.58 0.00 31.75 4.52
923 945 1.811266 CCATGGTCGTCTCTTGGCG 60.811 63.158 2.57 0.00 0.00 5.69
924 946 2.125512 ATGGTCGTCTCTTGGCGC 60.126 61.111 0.00 0.00 0.00 6.53
925 947 3.989698 ATGGTCGTCTCTTGGCGCG 62.990 63.158 0.00 0.00 0.00 6.86
948 970 3.105928 GGGCCACCCATCTCCCAT 61.106 66.667 4.39 0.00 44.65 4.00
949 971 2.196776 GGCCACCCATCTCCCATG 59.803 66.667 0.00 0.00 0.00 3.66
950 972 2.196776 GCCACCCATCTCCCATGG 59.803 66.667 4.14 4.14 38.88 3.66
951 973 2.196776 CCACCCATCTCCCATGGC 59.803 66.667 6.09 0.00 37.85 4.40
952 974 2.692824 CCACCCATCTCCCATGGCA 61.693 63.158 6.09 0.00 37.85 4.92
953 975 1.307309 CACCCATCTCCCATGGCAA 59.693 57.895 6.09 0.00 37.85 4.52
954 976 0.754217 CACCCATCTCCCATGGCAAG 60.754 60.000 6.09 6.11 37.85 4.01
955 977 1.831286 CCCATCTCCCATGGCAAGC 60.831 63.158 6.09 0.00 37.85 4.01
956 978 1.076559 CCATCTCCCATGGCAAGCA 60.077 57.895 6.09 0.00 31.75 3.91
957 979 1.107538 CCATCTCCCATGGCAAGCAG 61.108 60.000 6.09 2.10 31.75 4.24
958 980 1.455217 ATCTCCCATGGCAAGCAGC 60.455 57.895 6.09 0.00 44.65 5.25
967 989 3.672293 GCAAGCAGCCAAGCACTA 58.328 55.556 0.00 0.00 37.23 2.74
968 990 1.211190 GCAAGCAGCCAAGCACTAC 59.789 57.895 0.00 0.00 37.23 2.73
969 991 1.518056 GCAAGCAGCCAAGCACTACA 61.518 55.000 0.00 0.00 37.23 2.74
970 992 0.953727 CAAGCAGCCAAGCACTACAA 59.046 50.000 0.00 0.00 36.85 2.41
971 993 1.337703 CAAGCAGCCAAGCACTACAAA 59.662 47.619 0.00 0.00 36.85 2.83
972 994 1.691196 AGCAGCCAAGCACTACAAAA 58.309 45.000 0.00 0.00 36.85 2.44
973 995 2.031120 AGCAGCCAAGCACTACAAAAA 58.969 42.857 0.00 0.00 36.85 1.94
974 996 2.127251 GCAGCCAAGCACTACAAAAAC 58.873 47.619 0.00 0.00 0.00 2.43
975 997 2.481104 GCAGCCAAGCACTACAAAAACA 60.481 45.455 0.00 0.00 0.00 2.83
976 998 3.374745 CAGCCAAGCACTACAAAAACAG 58.625 45.455 0.00 0.00 0.00 3.16
977 999 3.023832 AGCCAAGCACTACAAAAACAGT 58.976 40.909 0.00 0.00 0.00 3.55
978 1000 4.036262 CAGCCAAGCACTACAAAAACAGTA 59.964 41.667 0.00 0.00 0.00 2.74
979 1001 4.275936 AGCCAAGCACTACAAAAACAGTAG 59.724 41.667 0.00 0.00 43.51 2.57
991 1013 7.806149 ACAAAAACAGTAGTACAAAACAAGC 57.194 32.000 2.52 0.00 0.00 4.01
992 1014 7.371936 ACAAAAACAGTAGTACAAAACAAGCA 58.628 30.769 2.52 0.00 0.00 3.91
993 1015 7.540745 ACAAAAACAGTAGTACAAAACAAGCAG 59.459 33.333 2.52 0.00 0.00 4.24
994 1016 5.751243 AACAGTAGTACAAAACAAGCAGG 57.249 39.130 2.52 0.00 0.00 4.85
995 1017 3.564225 ACAGTAGTACAAAACAAGCAGGC 59.436 43.478 2.52 0.00 0.00 4.85
996 1018 3.563808 CAGTAGTACAAAACAAGCAGGCA 59.436 43.478 2.52 0.00 0.00 4.75
997 1019 4.036262 CAGTAGTACAAAACAAGCAGGCAA 59.964 41.667 2.52 0.00 0.00 4.52
998 1020 3.715628 AGTACAAAACAAGCAGGCAAG 57.284 42.857 0.00 0.00 0.00 4.01
999 1021 2.127251 GTACAAAACAAGCAGGCAAGC 58.873 47.619 0.00 0.00 0.00 4.01
1000 1022 0.536260 ACAAAACAAGCAGGCAAGCA 59.464 45.000 4.78 0.00 36.85 3.91
1001 1023 1.066286 ACAAAACAAGCAGGCAAGCAA 60.066 42.857 4.78 0.00 36.85 3.91
1002 1024 1.328374 CAAAACAAGCAGGCAAGCAAC 59.672 47.619 4.78 0.00 36.85 4.17
1003 1025 0.536260 AAACAAGCAGGCAAGCAACA 59.464 45.000 4.78 0.00 36.85 3.33
1004 1026 0.179103 AACAAGCAGGCAAGCAACAC 60.179 50.000 4.78 0.00 36.85 3.32
1005 1027 1.300388 CAAGCAGGCAAGCAACACC 60.300 57.895 4.78 0.00 36.85 4.16
1006 1028 1.757731 AAGCAGGCAAGCAACACCA 60.758 52.632 4.78 0.00 36.85 4.17
1007 1029 1.741327 AAGCAGGCAAGCAACACCAG 61.741 55.000 4.78 0.00 36.85 4.00
1008 1030 2.492773 GCAGGCAAGCAACACCAGT 61.493 57.895 0.00 0.00 0.00 4.00
1009 1031 1.172180 GCAGGCAAGCAACACCAGTA 61.172 55.000 0.00 0.00 0.00 2.74
1010 1032 1.317613 CAGGCAAGCAACACCAGTAA 58.682 50.000 0.00 0.00 0.00 2.24
1011 1033 1.001378 CAGGCAAGCAACACCAGTAAC 60.001 52.381 0.00 0.00 0.00 2.50
1012 1034 1.028905 GGCAAGCAACACCAGTAACA 58.971 50.000 0.00 0.00 0.00 2.41
1013 1035 1.269051 GGCAAGCAACACCAGTAACAC 60.269 52.381 0.00 0.00 0.00 3.32
1014 1036 1.403679 GCAAGCAACACCAGTAACACA 59.596 47.619 0.00 0.00 0.00 3.72
1015 1037 2.794631 GCAAGCAACACCAGTAACACAC 60.795 50.000 0.00 0.00 0.00 3.82
1016 1038 2.682856 CAAGCAACACCAGTAACACACT 59.317 45.455 0.00 0.00 38.32 3.55
1026 1048 3.662247 AGTAACACACTGCACTAGTCC 57.338 47.619 0.00 0.00 37.60 3.85
1027 1049 2.963101 AGTAACACACTGCACTAGTCCA 59.037 45.455 0.00 0.00 37.60 4.02
1028 1050 2.533266 AACACACTGCACTAGTCCAG 57.467 50.000 12.46 12.46 37.60 3.86
1029 1051 1.414158 ACACACTGCACTAGTCCAGT 58.586 50.000 13.93 13.93 42.67 4.00
1030 1052 2.594131 ACACACTGCACTAGTCCAGTA 58.406 47.619 19.02 0.00 40.12 2.74
1031 1053 2.558795 ACACACTGCACTAGTCCAGTAG 59.441 50.000 19.02 16.12 40.12 2.57
1032 1054 2.558795 CACACTGCACTAGTCCAGTAGT 59.441 50.000 19.02 15.57 40.12 2.73
1033 1055 3.756963 CACACTGCACTAGTCCAGTAGTA 59.243 47.826 19.02 0.00 40.12 1.82
1034 1056 3.757493 ACACTGCACTAGTCCAGTAGTAC 59.243 47.826 19.02 0.00 40.12 2.73
1035 1057 3.756963 CACTGCACTAGTCCAGTAGTACA 59.243 47.826 19.02 0.00 40.12 2.90
1036 1058 4.217767 CACTGCACTAGTCCAGTAGTACAA 59.782 45.833 19.02 0.00 40.12 2.41
1037 1059 4.459685 ACTGCACTAGTCCAGTAGTACAAG 59.540 45.833 18.06 0.00 40.30 3.16
1038 1060 3.192844 TGCACTAGTCCAGTAGTACAAGC 59.807 47.826 2.52 0.00 34.98 4.01
1039 1061 3.192844 GCACTAGTCCAGTAGTACAAGCA 59.807 47.826 2.52 0.00 34.98 3.91
1040 1062 4.142138 GCACTAGTCCAGTAGTACAAGCAT 60.142 45.833 2.52 0.00 34.98 3.79
1041 1063 5.067413 GCACTAGTCCAGTAGTACAAGCATA 59.933 44.000 2.52 0.00 34.98 3.14
1042 1064 6.405508 GCACTAGTCCAGTAGTACAAGCATAA 60.406 42.308 2.52 0.00 34.98 1.90
1043 1065 7.544622 CACTAGTCCAGTAGTACAAGCATAAA 58.455 38.462 2.52 0.00 34.98 1.40
1044 1066 7.702772 CACTAGTCCAGTAGTACAAGCATAAAG 59.297 40.741 2.52 0.00 34.98 1.85
1045 1067 6.607004 AGTCCAGTAGTACAAGCATAAAGT 57.393 37.500 2.52 0.00 0.00 2.66
1046 1068 6.398918 AGTCCAGTAGTACAAGCATAAAGTG 58.601 40.000 2.52 0.00 0.00 3.16
1057 1079 1.640428 CATAAAGTGCTCGGCGAAGA 58.360 50.000 12.13 0.00 0.00 2.87
1058 1080 1.999735 CATAAAGTGCTCGGCGAAGAA 59.000 47.619 12.13 0.00 0.00 2.52
1059 1081 2.157834 TAAAGTGCTCGGCGAAGAAA 57.842 45.000 12.13 0.00 0.00 2.52
1060 1082 0.868406 AAAGTGCTCGGCGAAGAAAG 59.132 50.000 12.13 0.00 0.00 2.62
1061 1083 0.951040 AAGTGCTCGGCGAAGAAAGG 60.951 55.000 12.13 0.00 0.00 3.11
1062 1084 1.374252 GTGCTCGGCGAAGAAAGGA 60.374 57.895 12.13 0.00 0.00 3.36
1063 1085 0.949105 GTGCTCGGCGAAGAAAGGAA 60.949 55.000 12.13 0.00 0.00 3.36
1064 1086 0.036388 TGCTCGGCGAAGAAAGGAAT 60.036 50.000 12.13 0.00 0.00 3.01
1065 1087 0.653114 GCTCGGCGAAGAAAGGAATC 59.347 55.000 12.13 0.00 0.00 2.52
1066 1088 0.924090 CTCGGCGAAGAAAGGAATCG 59.076 55.000 12.13 0.00 39.47 3.34
1067 1089 0.459585 TCGGCGAAGAAAGGAATCGG 60.460 55.000 7.35 0.00 37.08 4.18
1068 1090 1.429148 CGGCGAAGAAAGGAATCGGG 61.429 60.000 0.00 0.00 37.08 5.14
1069 1091 1.095807 GGCGAAGAAAGGAATCGGGG 61.096 60.000 0.00 0.00 37.08 5.73
1070 1092 1.715862 GCGAAGAAAGGAATCGGGGC 61.716 60.000 0.00 0.00 37.08 5.80
1071 1093 0.392461 CGAAGAAAGGAATCGGGGCA 60.392 55.000 0.00 0.00 33.15 5.36
1072 1094 1.834188 GAAGAAAGGAATCGGGGCAA 58.166 50.000 0.00 0.00 0.00 4.52
1073 1095 2.167662 GAAGAAAGGAATCGGGGCAAA 58.832 47.619 0.00 0.00 0.00 3.68
1074 1096 1.545841 AGAAAGGAATCGGGGCAAAC 58.454 50.000 0.00 0.00 0.00 2.93
1075 1097 1.203001 AGAAAGGAATCGGGGCAAACA 60.203 47.619 0.00 0.00 0.00 2.83
1076 1098 1.202348 GAAAGGAATCGGGGCAAACAG 59.798 52.381 0.00 0.00 0.00 3.16
1077 1099 0.611896 AAGGAATCGGGGCAAACAGG 60.612 55.000 0.00 0.00 0.00 4.00
1078 1100 1.001393 GGAATCGGGGCAAACAGGA 60.001 57.895 0.00 0.00 0.00 3.86
1079 1101 1.313091 GGAATCGGGGCAAACAGGAC 61.313 60.000 0.00 0.00 0.00 3.85
1080 1102 0.608035 GAATCGGGGCAAACAGGACA 60.608 55.000 0.00 0.00 0.00 4.02
1081 1103 0.609131 AATCGGGGCAAACAGGACAG 60.609 55.000 0.00 0.00 0.00 3.51
1082 1104 2.484287 ATCGGGGCAAACAGGACAGG 62.484 60.000 0.00 0.00 0.00 4.00
1083 1105 2.991540 GGGGCAAACAGGACAGGC 60.992 66.667 0.00 0.00 0.00 4.85
1084 1106 2.991540 GGGCAAACAGGACAGGCC 60.992 66.667 0.00 0.00 43.86 5.19
1085 1107 3.365265 GGCAAACAGGACAGGCCG 61.365 66.667 0.00 0.00 43.43 6.13
1086 1108 3.365265 GCAAACAGGACAGGCCGG 61.365 66.667 0.00 0.00 43.43 6.13
1087 1109 2.429930 CAAACAGGACAGGCCGGA 59.570 61.111 10.86 0.00 43.43 5.14
1088 1110 1.228124 CAAACAGGACAGGCCGGAA 60.228 57.895 10.86 0.00 43.43 4.30
1089 1111 1.228154 AAACAGGACAGGCCGGAAC 60.228 57.895 10.86 1.26 43.43 3.62
1090 1112 2.692273 AAACAGGACAGGCCGGAACC 62.692 60.000 10.86 12.51 43.43 3.62
1091 1113 4.760047 CAGGACAGGCCGGAACCG 62.760 72.222 10.86 6.25 43.43 4.44
1106 1128 4.889112 CCGGGGAGGGACGATCGA 62.889 72.222 24.34 0.00 35.97 3.59
1634 1672 2.103143 CGCTACGAGCAGGACCTG 59.897 66.667 17.83 17.83 42.58 4.00
1636 1674 2.496817 CTACGAGCAGGACCTGGC 59.503 66.667 23.09 14.68 31.21 4.85
1655 1693 1.878656 CGAAGAGCAAGTCCCTCGGT 61.879 60.000 0.00 0.00 34.56 4.69
1733 1777 4.719369 GTCCTCGTCAACGGCGCT 62.719 66.667 6.90 0.00 40.29 5.92
1751 1795 3.188786 GGCGACGATCACAGCACC 61.189 66.667 0.00 0.00 0.00 5.01
1771 1815 1.605712 CGCCGTCCAAGAAGAAGAAGT 60.606 52.381 0.00 0.00 0.00 3.01
1776 1820 3.403968 GTCCAAGAAGAAGAAGTGGGAC 58.596 50.000 0.00 0.00 37.07 4.46
1783 1827 1.746220 AGAAGAAGTGGGACGAGATCG 59.254 52.381 0.00 0.00 46.33 3.69
1793 1843 0.250989 GACGAGATCGGGAGGAGGAT 60.251 60.000 7.22 0.00 44.95 3.24
1797 1847 1.005450 GAGATCGGGAGGAGGATAGCT 59.995 57.143 0.00 0.00 0.00 3.32
1798 1848 1.005450 AGATCGGGAGGAGGATAGCTC 59.995 57.143 0.00 0.00 0.00 4.09
1807 1860 2.522273 AGGAGGATAGCTCTTCTTCCCT 59.478 50.000 18.68 3.64 39.53 4.20
2132 2185 2.362889 GCCATGAACCTGGTGGGG 60.363 66.667 0.00 0.82 38.63 4.96
2399 2452 0.729478 CGTTCGTCATGCTCGTCTGT 60.729 55.000 9.23 0.00 0.00 3.41
2498 2551 2.278142 GCACGCGCCATTTCCATC 60.278 61.111 5.73 0.00 0.00 3.51
2503 2556 0.028505 CGCGCCATTTCCATCTGAAG 59.971 55.000 0.00 0.00 33.63 3.02
2510 2563 5.589192 GCCATTTCCATCTGAAGATCAAAG 58.411 41.667 0.00 0.00 33.63 2.77
2516 2569 3.309138 CCATCTGAAGATCAAAGCACTCG 59.691 47.826 0.00 0.00 31.21 4.18
2543 2596 4.280677 TGATCCATGCATGTACATCTCGTA 59.719 41.667 24.58 5.36 0.00 3.43
2564 2617 2.038164 ACATCCATCGTCATCCCATCTG 59.962 50.000 0.00 0.00 0.00 2.90
2579 2632 6.320434 TCCCATCTGTATGTTTTACATGGA 57.680 37.500 0.00 0.00 39.53 3.41
2587 2643 1.795872 TGTTTTACATGGACTGCGTCG 59.204 47.619 0.00 0.00 32.65 5.12
2588 2644 0.793861 TTTTACATGGACTGCGTCGC 59.206 50.000 11.10 11.10 32.65 5.19
2601 2657 2.546321 GTCGCGTGTGCACTTCTG 59.454 61.111 19.41 5.91 42.97 3.02
2691 2747 3.474823 CGTAGCGATTCGTGCTTTG 57.525 52.632 8.03 0.00 43.71 2.77
2849 2915 0.991920 TGACTTGACTCCATTCCCCC 59.008 55.000 0.00 0.00 0.00 5.40
2872 2938 1.542030 GCTCCTCTGTTCGTCTTCTGA 59.458 52.381 0.00 0.00 0.00 3.27
2923 2996 1.961394 CGAATCGGGATACAGAAGGGA 59.039 52.381 0.00 0.00 46.28 4.20
2966 3039 4.517832 AGATCCCCGTTTTGTTCAAGTAAC 59.482 41.667 0.00 0.00 38.67 2.50
2974 3047 5.454232 CGTTTTGTTCAAGTAACGCATTCTT 59.546 36.000 8.73 0.00 41.30 2.52
3013 3086 4.343814 CCCCCACTGTTTTTATGTTCTTGT 59.656 41.667 0.00 0.00 0.00 3.16
3072 3145 2.716023 TGGGGAGGTTTGTTAGGGTTA 58.284 47.619 0.00 0.00 0.00 2.85
3150 3223 5.014755 AGGGGGTTGATACATTTGTTGTAGA 59.985 40.000 0.00 0.00 43.87 2.59
3212 3285 6.650120 AGGTTGTTAGGTATTCATGTAGGTG 58.350 40.000 0.00 0.00 0.00 4.00
3228 3301 8.091449 TCATGTAGGTGTTTGTTTTTGTTTCTT 58.909 29.630 0.00 0.00 0.00 2.52
3253 3326 1.771746 ATGGGTGGGCGGATGAGAT 60.772 57.895 0.00 0.00 0.00 2.75
3268 3341 5.163754 CGGATGAGATTTTTAGGGTGTTGAC 60.164 44.000 0.00 0.00 0.00 3.18
3303 3376 9.085645 TCTGACTAGGTTTTTGTGTCTTAGATA 57.914 33.333 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.807921 CCATTATAAATACCAGGAACCAATAGT 57.192 33.333 0.00 0.00 0.00 2.12
40 41 4.323868 GCACTAACTTTCTCCTCTCCCATT 60.324 45.833 0.00 0.00 0.00 3.16
81 83 7.759489 TTGTCATTGCTATCAACTTAGGTTT 57.241 32.000 0.00 0.00 34.60 3.27
92 94 6.971184 CCAAAGTTCTGATTGTCATTGCTATC 59.029 38.462 0.00 0.00 0.00 2.08
129 132 1.003116 CTTTGCATCACTCGCCATAGC 60.003 52.381 0.00 0.00 0.00 2.97
163 166 2.905415 TGATCTTTCCCAGCCATGTT 57.095 45.000 0.00 0.00 0.00 2.71
205 208 0.608035 GTCAAAAGCCCCATCCACGA 60.608 55.000 0.00 0.00 0.00 4.35
255 260 0.747255 CCATTCGAGTCTCCGGTGAT 59.253 55.000 9.83 0.00 0.00 3.06
259 264 2.278857 CGCCATTCGAGTCTCCGG 60.279 66.667 0.00 0.00 41.67 5.14
261 266 0.105039 AATCCGCCATTCGAGTCTCC 59.895 55.000 0.00 0.00 41.67 3.71
276 281 1.327764 GTTTCCTCATGCGACGAATCC 59.672 52.381 0.00 0.00 0.00 3.01
342 347 1.413812 ACCGAGACCAAACCGTAAAGT 59.586 47.619 0.00 0.00 0.00 2.66
344 349 2.613133 CAAACCGAGACCAAACCGTAAA 59.387 45.455 0.00 0.00 0.00 2.01
360 365 0.872388 CCGACTGTAGTTGCCAAACC 59.128 55.000 0.00 0.00 36.94 3.27
417 423 5.925397 CCTCCATTCTTCATTGTCTCTATCG 59.075 44.000 0.00 0.00 0.00 2.92
536 547 5.684626 GCTAAATCATGAGCACACAATTAGC 59.315 40.000 0.09 13.06 38.62 3.09
572 586 3.340928 GGAACCGCATACACCTTACTTT 58.659 45.455 0.00 0.00 0.00 2.66
592 606 4.410228 TCAATAATCTCTCTGGGTGAAGGG 59.590 45.833 0.00 0.00 0.00 3.95
594 616 5.469421 GCATCAATAATCTCTCTGGGTGAAG 59.531 44.000 0.00 0.00 0.00 3.02
596 618 4.657504 AGCATCAATAATCTCTCTGGGTGA 59.342 41.667 0.00 0.00 0.00 4.02
678 700 2.304761 AGACTTTGGAAATGGGCGACTA 59.695 45.455 0.00 0.00 0.00 2.59
682 704 1.470098 CTCAGACTTTGGAAATGGGCG 59.530 52.381 0.00 0.00 0.00 6.13
684 706 2.490903 CTGCTCAGACTTTGGAAATGGG 59.509 50.000 0.00 0.00 0.00 4.00
686 708 4.458295 ACATCTGCTCAGACTTTGGAAATG 59.542 41.667 1.15 0.00 40.75 2.32
687 709 4.660168 ACATCTGCTCAGACTTTGGAAAT 58.340 39.130 1.15 0.00 40.75 2.17
688 710 4.067896 GACATCTGCTCAGACTTTGGAAA 58.932 43.478 1.15 0.00 40.75 3.13
689 711 3.071457 TGACATCTGCTCAGACTTTGGAA 59.929 43.478 1.15 0.00 40.75 3.53
690 712 2.634453 TGACATCTGCTCAGACTTTGGA 59.366 45.455 1.15 0.00 40.75 3.53
691 713 3.049708 TGACATCTGCTCAGACTTTGG 57.950 47.619 1.15 0.00 40.75 3.28
692 714 4.753610 TCTTTGACATCTGCTCAGACTTTG 59.246 41.667 1.15 0.00 40.75 2.77
693 715 4.965814 TCTTTGACATCTGCTCAGACTTT 58.034 39.130 1.15 0.00 40.75 2.66
694 716 4.613925 TCTTTGACATCTGCTCAGACTT 57.386 40.909 1.15 0.00 40.75 3.01
695 717 4.040217 AGTTCTTTGACATCTGCTCAGACT 59.960 41.667 1.15 0.00 40.75 3.24
696 718 4.314121 AGTTCTTTGACATCTGCTCAGAC 58.686 43.478 1.15 0.00 40.75 3.51
697 719 4.039609 TGAGTTCTTTGACATCTGCTCAGA 59.960 41.667 1.67 1.67 42.37 3.27
698 720 4.313282 TGAGTTCTTTGACATCTGCTCAG 58.687 43.478 0.00 0.00 0.00 3.35
699 721 4.341366 TGAGTTCTTTGACATCTGCTCA 57.659 40.909 0.00 0.00 0.00 4.26
700 722 4.153835 CCTTGAGTTCTTTGACATCTGCTC 59.846 45.833 0.00 0.00 0.00 4.26
701 723 4.070716 CCTTGAGTTCTTTGACATCTGCT 58.929 43.478 0.00 0.00 0.00 4.24
702 724 3.817647 ACCTTGAGTTCTTTGACATCTGC 59.182 43.478 0.00 0.00 0.00 4.26
703 725 8.954950 ATATACCTTGAGTTCTTTGACATCTG 57.045 34.615 0.00 0.00 0.00 2.90
713 735 9.373450 ACTGTCATGATATATACCTTGAGTTCT 57.627 33.333 0.00 0.00 0.00 3.01
714 736 9.988815 AACTGTCATGATATATACCTTGAGTTC 57.011 33.333 0.00 0.00 0.00 3.01
733 755 9.582431 GCAAGATACTAATACAAGTAACTGTCA 57.418 33.333 0.00 0.00 35.83 3.58
734 756 9.032420 GGCAAGATACTAATACAAGTAACTGTC 57.968 37.037 0.00 0.00 35.83 3.51
735 757 8.759782 AGGCAAGATACTAATACAAGTAACTGT 58.240 33.333 0.00 0.00 35.83 3.55
736 758 9.035607 CAGGCAAGATACTAATACAAGTAACTG 57.964 37.037 0.00 0.00 35.83 3.16
737 759 7.711339 GCAGGCAAGATACTAATACAAGTAACT 59.289 37.037 0.00 0.00 36.85 2.24
738 760 7.306632 CGCAGGCAAGATACTAATACAAGTAAC 60.307 40.741 0.00 0.00 35.65 2.50
739 761 6.700081 CGCAGGCAAGATACTAATACAAGTAA 59.300 38.462 0.00 0.00 35.65 2.24
740 762 6.213677 CGCAGGCAAGATACTAATACAAGTA 58.786 40.000 0.00 0.00 36.44 2.24
741 763 5.050490 CGCAGGCAAGATACTAATACAAGT 58.950 41.667 0.00 0.00 0.00 3.16
742 764 4.449068 CCGCAGGCAAGATACTAATACAAG 59.551 45.833 0.00 0.00 46.14 3.16
743 765 4.377021 CCGCAGGCAAGATACTAATACAA 58.623 43.478 0.00 0.00 46.14 2.41
744 766 3.990092 CCGCAGGCAAGATACTAATACA 58.010 45.455 0.00 0.00 46.14 2.29
771 793 1.633852 CGAGTTCTCTTGCCTGCAGC 61.634 60.000 8.66 4.57 44.14 5.25
772 794 1.633852 GCGAGTTCTCTTGCCTGCAG 61.634 60.000 6.78 6.78 43.31 4.41
773 795 1.669115 GCGAGTTCTCTTGCCTGCA 60.669 57.895 0.00 0.00 43.31 4.41
774 796 3.172919 GCGAGTTCTCTTGCCTGC 58.827 61.111 0.00 0.00 43.31 4.85
779 801 3.138205 ACGACTATGCGAGTTCTCTTG 57.862 47.619 0.00 0.00 39.06 3.02
780 802 4.790123 GCATACGACTATGCGAGTTCTCTT 60.790 45.833 2.65 0.00 44.55 2.85
781 803 3.304123 GCATACGACTATGCGAGTTCTCT 60.304 47.826 2.65 0.00 44.55 3.10
782 804 2.974536 GCATACGACTATGCGAGTTCTC 59.025 50.000 2.65 0.00 44.55 2.87
783 805 3.001395 GCATACGACTATGCGAGTTCT 57.999 47.619 2.65 0.00 44.55 3.01
791 813 1.273606 CCTCCCCTGCATACGACTATG 59.726 57.143 0.00 0.00 33.92 2.23
792 814 1.633774 CCTCCCCTGCATACGACTAT 58.366 55.000 0.00 0.00 0.00 2.12
793 815 0.469331 CCCTCCCCTGCATACGACTA 60.469 60.000 0.00 0.00 0.00 2.59
794 816 1.762460 CCCTCCCCTGCATACGACT 60.762 63.158 0.00 0.00 0.00 4.18
795 817 2.822399 CCCTCCCCTGCATACGAC 59.178 66.667 0.00 0.00 0.00 4.34
796 818 3.161450 GCCCTCCCCTGCATACGA 61.161 66.667 0.00 0.00 0.00 3.43
797 819 4.609018 CGCCCTCCCCTGCATACG 62.609 72.222 0.00 0.00 0.00 3.06
798 820 4.937431 GCGCCCTCCCCTGCATAC 62.937 72.222 0.00 0.00 0.00 2.39
803 825 3.399181 TACAAGCGCCCTCCCCTG 61.399 66.667 2.29 0.00 0.00 4.45
804 826 3.400054 GTACAAGCGCCCTCCCCT 61.400 66.667 2.29 0.00 0.00 4.79
805 827 4.832608 CGTACAAGCGCCCTCCCC 62.833 72.222 2.29 0.00 0.00 4.81
806 828 2.624437 CTACGTACAAGCGCCCTCCC 62.624 65.000 2.29 0.00 34.88 4.30
807 829 1.226888 CTACGTACAAGCGCCCTCC 60.227 63.158 2.29 0.00 34.88 4.30
808 830 1.877165 GCTACGTACAAGCGCCCTC 60.877 63.158 2.29 0.00 34.88 4.30
809 831 2.183555 GCTACGTACAAGCGCCCT 59.816 61.111 2.29 0.00 34.88 5.19
810 832 2.125832 TGCTACGTACAAGCGCCC 60.126 61.111 2.29 0.00 43.11 6.13
811 833 3.078560 GTGCTACGTACAAGCGCC 58.921 61.111 16.24 5.56 43.16 6.53
813 835 1.909532 GTACTGTGCTACGTACAAGCG 59.090 52.381 11.41 2.15 43.11 4.68
814 836 2.937591 TGTACTGTGCTACGTACAAGC 58.062 47.619 9.69 9.69 41.95 4.01
820 842 9.406828 CAACATATAATATGTACTGTGCTACGT 57.593 33.333 0.00 0.00 0.00 3.57
821 843 8.373256 GCAACATATAATATGTACTGTGCTACG 58.627 37.037 0.00 0.00 32.41 3.51
822 844 8.373256 CGCAACATATAATATGTACTGTGCTAC 58.627 37.037 1.93 0.00 32.76 3.58
823 845 7.544217 CCGCAACATATAATATGTACTGTGCTA 59.456 37.037 1.93 0.00 32.76 3.49
824 846 6.368791 CCGCAACATATAATATGTACTGTGCT 59.631 38.462 1.93 0.00 32.76 4.40
825 847 6.147164 ACCGCAACATATAATATGTACTGTGC 59.853 38.462 0.00 0.00 32.04 4.57
826 848 7.383843 TGACCGCAACATATAATATGTACTGTG 59.616 37.037 0.00 0.00 0.00 3.66
827 849 7.438564 TGACCGCAACATATAATATGTACTGT 58.561 34.615 0.00 0.00 0.00 3.55
828 850 7.883229 TGACCGCAACATATAATATGTACTG 57.117 36.000 0.00 0.00 0.00 2.74
844 866 1.118965 TCCTCCAGAGTTGACCGCAA 61.119 55.000 0.00 0.00 0.00 4.85
845 867 1.533033 TCCTCCAGAGTTGACCGCA 60.533 57.895 0.00 0.00 0.00 5.69
846 868 1.216710 CTCCTCCAGAGTTGACCGC 59.783 63.158 0.00 0.00 37.87 5.68
847 869 1.216710 GCTCCTCCAGAGTTGACCG 59.783 63.158 0.00 0.00 45.21 4.79
848 870 0.687354 TTGCTCCTCCAGAGTTGACC 59.313 55.000 0.00 0.00 45.21 4.02
849 871 2.777832 ATTGCTCCTCCAGAGTTGAC 57.222 50.000 0.00 0.00 45.21 3.18
850 872 3.173151 TGTATTGCTCCTCCAGAGTTGA 58.827 45.455 0.00 0.00 45.21 3.18
851 873 3.616956 TGTATTGCTCCTCCAGAGTTG 57.383 47.619 0.00 0.00 45.21 3.16
852 874 4.851639 ATTGTATTGCTCCTCCAGAGTT 57.148 40.909 0.00 0.00 45.21 3.01
853 875 4.716784 TGTATTGTATTGCTCCTCCAGAGT 59.283 41.667 0.00 0.00 45.21 3.24
854 876 5.069648 TCTGTATTGTATTGCTCCTCCAGAG 59.930 44.000 0.00 0.00 46.29 3.35
855 877 4.962362 TCTGTATTGTATTGCTCCTCCAGA 59.038 41.667 0.00 0.00 0.00 3.86
856 878 5.282055 TCTGTATTGTATTGCTCCTCCAG 57.718 43.478 0.00 0.00 0.00 3.86
857 879 4.443457 GCTCTGTATTGTATTGCTCCTCCA 60.443 45.833 0.00 0.00 0.00 3.86
858 880 4.061596 GCTCTGTATTGTATTGCTCCTCC 58.938 47.826 0.00 0.00 0.00 4.30
859 881 3.738282 CGCTCTGTATTGTATTGCTCCTC 59.262 47.826 0.00 0.00 0.00 3.71
860 882 3.384789 TCGCTCTGTATTGTATTGCTCCT 59.615 43.478 0.00 0.00 0.00 3.69
861 883 3.491267 GTCGCTCTGTATTGTATTGCTCC 59.509 47.826 0.00 0.00 0.00 4.70
862 884 4.112634 TGTCGCTCTGTATTGTATTGCTC 58.887 43.478 0.00 0.00 0.00 4.26
863 885 4.123497 TGTCGCTCTGTATTGTATTGCT 57.877 40.909 0.00 0.00 0.00 3.91
864 886 4.507756 TCATGTCGCTCTGTATTGTATTGC 59.492 41.667 0.00 0.00 0.00 3.56
865 887 5.332883 GCTCATGTCGCTCTGTATTGTATTG 60.333 44.000 0.00 0.00 0.00 1.90
866 888 4.747108 GCTCATGTCGCTCTGTATTGTATT 59.253 41.667 0.00 0.00 0.00 1.89
867 889 4.038522 AGCTCATGTCGCTCTGTATTGTAT 59.961 41.667 6.47 0.00 30.49 2.29
868 890 3.381590 AGCTCATGTCGCTCTGTATTGTA 59.618 43.478 6.47 0.00 30.49 2.41
869 891 2.167281 AGCTCATGTCGCTCTGTATTGT 59.833 45.455 6.47 0.00 30.49 2.71
870 892 2.819115 AGCTCATGTCGCTCTGTATTG 58.181 47.619 6.47 0.00 30.49 1.90
871 893 3.193263 CAAGCTCATGTCGCTCTGTATT 58.807 45.455 11.57 0.00 36.56 1.89
872 894 2.482664 CCAAGCTCATGTCGCTCTGTAT 60.483 50.000 11.57 0.00 36.56 2.29
873 895 1.134995 CCAAGCTCATGTCGCTCTGTA 60.135 52.381 11.57 0.00 36.56 2.74
874 896 0.390866 CCAAGCTCATGTCGCTCTGT 60.391 55.000 11.57 0.00 36.56 3.41
875 897 1.703438 GCCAAGCTCATGTCGCTCTG 61.703 60.000 11.57 11.32 36.56 3.35
876 898 1.449246 GCCAAGCTCATGTCGCTCT 60.449 57.895 11.57 2.23 36.56 4.09
877 899 1.703438 CTGCCAAGCTCATGTCGCTC 61.703 60.000 11.57 2.59 36.56 5.03
878 900 1.744368 CTGCCAAGCTCATGTCGCT 60.744 57.895 6.47 6.47 39.94 4.93
879 901 2.758089 CCTGCCAAGCTCATGTCGC 61.758 63.158 0.00 0.00 0.00 5.19
880 902 0.674581 TTCCTGCCAAGCTCATGTCG 60.675 55.000 0.00 0.00 0.00 4.35
881 903 1.093159 CTTCCTGCCAAGCTCATGTC 58.907 55.000 0.00 0.00 0.00 3.06
882 904 0.694771 TCTTCCTGCCAAGCTCATGT 59.305 50.000 0.00 0.00 0.00 3.21
883 905 1.948145 GATCTTCCTGCCAAGCTCATG 59.052 52.381 0.00 0.00 0.00 3.07
884 906 1.845143 AGATCTTCCTGCCAAGCTCAT 59.155 47.619 0.00 0.00 0.00 2.90
885 907 1.209019 GAGATCTTCCTGCCAAGCTCA 59.791 52.381 0.00 0.00 0.00 4.26
886 908 1.474855 GGAGATCTTCCTGCCAAGCTC 60.475 57.143 0.00 0.00 43.16 4.09
887 909 0.545646 GGAGATCTTCCTGCCAAGCT 59.454 55.000 0.00 0.00 43.16 3.74
888 910 0.254178 TGGAGATCTTCCTGCCAAGC 59.746 55.000 0.00 0.00 46.92 4.01
889 911 2.573369 CATGGAGATCTTCCTGCCAAG 58.427 52.381 4.34 0.00 46.92 3.61
890 912 1.213678 CCATGGAGATCTTCCTGCCAA 59.786 52.381 5.56 0.00 46.92 4.52
891 913 0.841961 CCATGGAGATCTTCCTGCCA 59.158 55.000 5.56 0.05 46.92 4.92
892 914 0.842635 ACCATGGAGATCTTCCTGCC 59.157 55.000 21.47 0.00 46.92 4.85
893 915 1.539929 CGACCATGGAGATCTTCCTGC 60.540 57.143 21.47 0.00 46.92 4.85
894 916 1.759445 ACGACCATGGAGATCTTCCTG 59.241 52.381 21.47 0.00 46.92 3.86
895 917 2.035632 GACGACCATGGAGATCTTCCT 58.964 52.381 21.47 0.00 46.92 3.36
896 918 2.035321 GAGACGACCATGGAGATCTTCC 59.965 54.545 21.47 1.47 46.98 3.46
897 919 2.955660 AGAGACGACCATGGAGATCTTC 59.044 50.000 21.47 8.97 0.00 2.87
898 920 3.025322 AGAGACGACCATGGAGATCTT 57.975 47.619 21.47 0.00 0.00 2.40
899 921 2.692557 CAAGAGACGACCATGGAGATCT 59.307 50.000 21.47 16.74 0.00 2.75
900 922 2.223923 CCAAGAGACGACCATGGAGATC 60.224 54.545 21.47 12.04 32.82 2.75
901 923 1.759445 CCAAGAGACGACCATGGAGAT 59.241 52.381 21.47 1.85 32.82 2.75
902 924 1.186200 CCAAGAGACGACCATGGAGA 58.814 55.000 21.47 0.00 32.82 3.71
903 925 0.460987 GCCAAGAGACGACCATGGAG 60.461 60.000 21.47 14.50 32.82 3.86
904 926 1.596934 GCCAAGAGACGACCATGGA 59.403 57.895 21.47 0.00 32.82 3.41
905 927 1.811266 CGCCAAGAGACGACCATGG 60.811 63.158 11.19 11.19 0.00 3.66
906 928 2.456119 GCGCCAAGAGACGACCATG 61.456 63.158 0.00 0.00 0.00 3.66
907 929 2.125512 GCGCCAAGAGACGACCAT 60.126 61.111 0.00 0.00 0.00 3.55
908 930 4.717629 CGCGCCAAGAGACGACCA 62.718 66.667 0.00 0.00 0.00 4.02
931 953 3.105928 ATGGGAGATGGGTGGCCC 61.106 66.667 0.00 0.00 45.71 5.80
932 954 2.196776 CATGGGAGATGGGTGGCC 59.803 66.667 0.00 0.00 0.00 5.36
933 955 2.196776 CCATGGGAGATGGGTGGC 59.803 66.667 2.85 0.00 35.58 5.01
934 956 2.196776 GCCATGGGAGATGGGTGG 59.803 66.667 15.13 0.00 39.53 4.61
935 957 0.754217 CTTGCCATGGGAGATGGGTG 60.754 60.000 15.13 0.00 39.53 4.61
936 958 1.616921 CTTGCCATGGGAGATGGGT 59.383 57.895 15.13 0.00 39.53 4.51
937 959 1.831286 GCTTGCCATGGGAGATGGG 60.831 63.158 15.13 1.18 39.53 4.00
938 960 1.076559 TGCTTGCCATGGGAGATGG 60.077 57.895 15.13 3.69 41.99 3.51
939 961 1.735376 GCTGCTTGCCATGGGAGATG 61.735 60.000 15.13 6.26 35.15 2.90
940 962 1.455217 GCTGCTTGCCATGGGAGAT 60.455 57.895 15.13 0.00 35.15 2.75
941 963 2.044650 GCTGCTTGCCATGGGAGA 60.045 61.111 15.13 0.78 35.15 3.71
950 972 1.211190 GTAGTGCTTGGCTGCTTGC 59.789 57.895 0.00 2.41 41.94 4.01
951 973 0.953727 TTGTAGTGCTTGGCTGCTTG 59.046 50.000 0.00 0.00 0.00 4.01
952 974 1.691196 TTTGTAGTGCTTGGCTGCTT 58.309 45.000 0.00 0.00 0.00 3.91
953 975 1.691196 TTTTGTAGTGCTTGGCTGCT 58.309 45.000 0.00 0.00 0.00 4.24
954 976 2.127251 GTTTTTGTAGTGCTTGGCTGC 58.873 47.619 0.00 0.00 0.00 5.25
955 977 3.181487 ACTGTTTTTGTAGTGCTTGGCTG 60.181 43.478 0.00 0.00 0.00 4.85
956 978 3.023832 ACTGTTTTTGTAGTGCTTGGCT 58.976 40.909 0.00 0.00 0.00 4.75
957 979 3.436700 ACTGTTTTTGTAGTGCTTGGC 57.563 42.857 0.00 0.00 0.00 4.52
958 980 5.751243 ACTACTGTTTTTGTAGTGCTTGG 57.249 39.130 5.85 0.00 45.92 3.61
959 981 7.241663 TGTACTACTGTTTTTGTAGTGCTTG 57.758 36.000 17.80 0.00 46.71 4.01
960 982 7.852971 TTGTACTACTGTTTTTGTAGTGCTT 57.147 32.000 17.80 0.00 46.71 3.91
961 983 7.852971 TTTGTACTACTGTTTTTGTAGTGCT 57.147 32.000 17.80 0.00 46.71 4.40
962 984 7.964011 TGTTTTGTACTACTGTTTTTGTAGTGC 59.036 33.333 14.46 13.57 46.71 4.40
963 985 9.828852 TTGTTTTGTACTACTGTTTTTGTAGTG 57.171 29.630 14.46 0.00 46.71 2.74
965 987 9.006215 GCTTGTTTTGTACTACTGTTTTTGTAG 57.994 33.333 0.00 0.00 42.07 2.74
966 988 8.512956 TGCTTGTTTTGTACTACTGTTTTTGTA 58.487 29.630 0.00 0.00 0.00 2.41
967 989 7.371936 TGCTTGTTTTGTACTACTGTTTTTGT 58.628 30.769 0.00 0.00 0.00 2.83
968 990 7.009174 CCTGCTTGTTTTGTACTACTGTTTTTG 59.991 37.037 0.00 0.00 0.00 2.44
969 991 7.033185 CCTGCTTGTTTTGTACTACTGTTTTT 58.967 34.615 0.00 0.00 0.00 1.94
970 992 6.560711 CCTGCTTGTTTTGTACTACTGTTTT 58.439 36.000 0.00 0.00 0.00 2.43
971 993 5.449999 GCCTGCTTGTTTTGTACTACTGTTT 60.450 40.000 0.00 0.00 0.00 2.83
972 994 4.036380 GCCTGCTTGTTTTGTACTACTGTT 59.964 41.667 0.00 0.00 0.00 3.16
973 995 3.564225 GCCTGCTTGTTTTGTACTACTGT 59.436 43.478 0.00 0.00 0.00 3.55
974 996 3.563808 TGCCTGCTTGTTTTGTACTACTG 59.436 43.478 0.00 0.00 0.00 2.74
975 997 3.815809 TGCCTGCTTGTTTTGTACTACT 58.184 40.909 0.00 0.00 0.00 2.57
976 998 4.537015 CTTGCCTGCTTGTTTTGTACTAC 58.463 43.478 0.00 0.00 0.00 2.73
977 999 3.004315 GCTTGCCTGCTTGTTTTGTACTA 59.996 43.478 0.00 0.00 0.00 1.82
978 1000 2.223805 GCTTGCCTGCTTGTTTTGTACT 60.224 45.455 0.00 0.00 0.00 2.73
979 1001 2.127251 GCTTGCCTGCTTGTTTTGTAC 58.873 47.619 0.00 0.00 0.00 2.90
980 1002 1.753649 TGCTTGCCTGCTTGTTTTGTA 59.246 42.857 0.00 0.00 0.00 2.41
981 1003 0.536260 TGCTTGCCTGCTTGTTTTGT 59.464 45.000 0.00 0.00 0.00 2.83
982 1004 1.328374 GTTGCTTGCCTGCTTGTTTTG 59.672 47.619 0.00 0.00 0.00 2.44
983 1005 1.066286 TGTTGCTTGCCTGCTTGTTTT 60.066 42.857 0.00 0.00 0.00 2.43
984 1006 0.536260 TGTTGCTTGCCTGCTTGTTT 59.464 45.000 0.00 0.00 0.00 2.83
985 1007 0.179103 GTGTTGCTTGCCTGCTTGTT 60.179 50.000 0.00 0.00 0.00 2.83
986 1008 1.438814 GTGTTGCTTGCCTGCTTGT 59.561 52.632 0.00 0.00 0.00 3.16
987 1009 1.300388 GGTGTTGCTTGCCTGCTTG 60.300 57.895 0.00 0.00 0.00 4.01
988 1010 1.741327 CTGGTGTTGCTTGCCTGCTT 61.741 55.000 0.00 0.00 0.00 3.91
989 1011 2.123769 TGGTGTTGCTTGCCTGCT 60.124 55.556 0.00 0.00 0.00 4.24
990 1012 1.172180 TACTGGTGTTGCTTGCCTGC 61.172 55.000 0.00 0.00 0.00 4.85
991 1013 1.001378 GTTACTGGTGTTGCTTGCCTG 60.001 52.381 0.00 0.00 0.00 4.85
992 1014 1.318576 GTTACTGGTGTTGCTTGCCT 58.681 50.000 0.00 0.00 0.00 4.75
993 1015 1.028905 TGTTACTGGTGTTGCTTGCC 58.971 50.000 0.00 0.00 0.00 4.52
994 1016 1.403679 TGTGTTACTGGTGTTGCTTGC 59.596 47.619 0.00 0.00 0.00 4.01
995 1017 2.682856 AGTGTGTTACTGGTGTTGCTTG 59.317 45.455 0.00 0.00 38.49 4.01
996 1018 2.999331 AGTGTGTTACTGGTGTTGCTT 58.001 42.857 0.00 0.00 38.49 3.91
997 1019 2.710096 AGTGTGTTACTGGTGTTGCT 57.290 45.000 0.00 0.00 38.49 3.91
1006 1028 2.963101 TGGACTAGTGCAGTGTGTTACT 59.037 45.455 13.71 0.00 37.72 2.24
1007 1029 3.318017 CTGGACTAGTGCAGTGTGTTAC 58.682 50.000 30.29 0.00 42.98 2.50
1008 1030 3.660501 CTGGACTAGTGCAGTGTGTTA 57.339 47.619 30.29 1.70 42.98 2.41
1009 1031 2.533266 CTGGACTAGTGCAGTGTGTT 57.467 50.000 30.29 0.00 42.98 3.32
1016 1038 3.192844 GCTTGTACTACTGGACTAGTGCA 59.807 47.826 16.82 16.82 40.65 4.57
1017 1039 3.192844 TGCTTGTACTACTGGACTAGTGC 59.807 47.826 7.56 7.56 40.65 4.40
1018 1040 5.584253 ATGCTTGTACTACTGGACTAGTG 57.416 43.478 0.00 0.00 40.65 2.74
1019 1041 7.396623 ACTTTATGCTTGTACTACTGGACTAGT 59.603 37.037 0.00 0.00 43.56 2.57
1020 1042 7.702772 CACTTTATGCTTGTACTACTGGACTAG 59.297 40.741 0.00 0.00 0.00 2.57
1021 1043 7.544622 CACTTTATGCTTGTACTACTGGACTA 58.455 38.462 0.00 0.00 0.00 2.59
1022 1044 6.398918 CACTTTATGCTTGTACTACTGGACT 58.601 40.000 0.00 0.00 0.00 3.85
1023 1045 6.648725 CACTTTATGCTTGTACTACTGGAC 57.351 41.667 0.00 0.00 0.00 4.02
1038 1060 1.640428 TCTTCGCCGAGCACTTTATG 58.360 50.000 0.00 0.00 0.00 1.90
1039 1061 2.380084 TTCTTCGCCGAGCACTTTAT 57.620 45.000 0.00 0.00 0.00 1.40
1040 1062 2.066262 CTTTCTTCGCCGAGCACTTTA 58.934 47.619 0.00 0.00 0.00 1.85
1041 1063 0.868406 CTTTCTTCGCCGAGCACTTT 59.132 50.000 0.00 0.00 0.00 2.66
1042 1064 0.951040 CCTTTCTTCGCCGAGCACTT 60.951 55.000 0.00 0.00 0.00 3.16
1043 1065 1.374758 CCTTTCTTCGCCGAGCACT 60.375 57.895 0.00 0.00 0.00 4.40
1044 1066 0.949105 TTCCTTTCTTCGCCGAGCAC 60.949 55.000 0.00 0.00 0.00 4.40
1045 1067 0.036388 ATTCCTTTCTTCGCCGAGCA 60.036 50.000 0.00 0.00 0.00 4.26
1046 1068 0.653114 GATTCCTTTCTTCGCCGAGC 59.347 55.000 0.00 0.00 0.00 5.03
1047 1069 0.924090 CGATTCCTTTCTTCGCCGAG 59.076 55.000 0.00 0.00 0.00 4.63
1048 1070 0.459585 CCGATTCCTTTCTTCGCCGA 60.460 55.000 0.00 0.00 0.00 5.54
1049 1071 1.429148 CCCGATTCCTTTCTTCGCCG 61.429 60.000 0.00 0.00 0.00 6.46
1050 1072 1.095807 CCCCGATTCCTTTCTTCGCC 61.096 60.000 0.00 0.00 0.00 5.54
1051 1073 1.715862 GCCCCGATTCCTTTCTTCGC 61.716 60.000 0.00 0.00 0.00 4.70
1052 1074 0.392461 TGCCCCGATTCCTTTCTTCG 60.392 55.000 0.00 0.00 0.00 3.79
1053 1075 1.834188 TTGCCCCGATTCCTTTCTTC 58.166 50.000 0.00 0.00 0.00 2.87
1054 1076 1.893137 GTTTGCCCCGATTCCTTTCTT 59.107 47.619 0.00 0.00 0.00 2.52
1055 1077 1.203001 TGTTTGCCCCGATTCCTTTCT 60.203 47.619 0.00 0.00 0.00 2.52
1056 1078 1.202348 CTGTTTGCCCCGATTCCTTTC 59.798 52.381 0.00 0.00 0.00 2.62
1057 1079 1.256812 CTGTTTGCCCCGATTCCTTT 58.743 50.000 0.00 0.00 0.00 3.11
1058 1080 0.611896 CCTGTTTGCCCCGATTCCTT 60.612 55.000 0.00 0.00 0.00 3.36
1059 1081 1.000896 CCTGTTTGCCCCGATTCCT 60.001 57.895 0.00 0.00 0.00 3.36
1060 1082 1.001393 TCCTGTTTGCCCCGATTCC 60.001 57.895 0.00 0.00 0.00 3.01
1061 1083 0.608035 TGTCCTGTTTGCCCCGATTC 60.608 55.000 0.00 0.00 0.00 2.52
1062 1084 0.609131 CTGTCCTGTTTGCCCCGATT 60.609 55.000 0.00 0.00 0.00 3.34
1063 1085 1.002134 CTGTCCTGTTTGCCCCGAT 60.002 57.895 0.00 0.00 0.00 4.18
1064 1086 2.429930 CTGTCCTGTTTGCCCCGA 59.570 61.111 0.00 0.00 0.00 5.14
1065 1087 2.672996 CCTGTCCTGTTTGCCCCG 60.673 66.667 0.00 0.00 0.00 5.73
1066 1088 2.991540 GCCTGTCCTGTTTGCCCC 60.992 66.667 0.00 0.00 0.00 5.80
1067 1089 2.991540 GGCCTGTCCTGTTTGCCC 60.992 66.667 0.00 0.00 36.07 5.36
1068 1090 3.365265 CGGCCTGTCCTGTTTGCC 61.365 66.667 0.00 0.00 38.74 4.52
1069 1091 3.365265 CCGGCCTGTCCTGTTTGC 61.365 66.667 0.00 0.00 0.00 3.68
1070 1092 1.228124 TTCCGGCCTGTCCTGTTTG 60.228 57.895 0.00 0.00 0.00 2.93
1071 1093 1.228154 GTTCCGGCCTGTCCTGTTT 60.228 57.895 0.00 0.00 0.00 2.83
1072 1094 2.430367 GTTCCGGCCTGTCCTGTT 59.570 61.111 0.00 0.00 0.00 3.16
1073 1095 3.637273 GGTTCCGGCCTGTCCTGT 61.637 66.667 0.00 0.00 0.00 4.00
1074 1096 4.760047 CGGTTCCGGCCTGTCCTG 62.760 72.222 0.00 0.00 0.00 3.86
1086 1108 2.762875 ATCGTCCCTCCCCGGTTC 60.763 66.667 0.00 0.00 0.00 3.62
1087 1109 2.762875 GATCGTCCCTCCCCGGTT 60.763 66.667 0.00 0.00 0.00 4.44
1089 1111 4.889112 TCGATCGTCCCTCCCCGG 62.889 72.222 15.94 0.00 0.00 5.73
1090 1112 3.593794 GTCGATCGTCCCTCCCCG 61.594 72.222 15.94 0.00 0.00 5.73
1091 1113 3.225061 GGTCGATCGTCCCTCCCC 61.225 72.222 19.11 4.11 0.00 4.81
1092 1114 3.593794 CGGTCGATCGTCCCTCCC 61.594 72.222 22.85 10.19 0.00 4.30
1093 1115 3.593794 CCGGTCGATCGTCCCTCC 61.594 72.222 22.85 13.56 0.00 4.30
1094 1116 4.267503 GCCGGTCGATCGTCCCTC 62.268 72.222 22.85 12.45 0.00 4.30
1097 1119 3.912907 ATGGCCGGTCGATCGTCC 61.913 66.667 19.75 19.75 0.00 4.79
1098 1120 2.658593 CATGGCCGGTCGATCGTC 60.659 66.667 18.13 3.25 0.00 4.20
1099 1121 4.221422 CCATGGCCGGTCGATCGT 62.221 66.667 18.13 0.00 0.00 3.73
1139 1161 2.833582 CCTTCTAGCGCCTCCGGA 60.834 66.667 2.93 2.93 34.32 5.14
1280 1302 0.753262 AGAGCACGATGGGGATGTAC 59.247 55.000 0.00 0.00 0.00 2.90
1520 1542 3.064958 CGAACCAGTAGACGAGCTTCATA 59.935 47.826 0.00 0.00 0.00 2.15
1577 1615 2.278330 GGCAAAGTTGAGCCCCTGG 61.278 63.158 8.12 0.00 45.18 4.45
1634 1672 1.448717 GAGGGACTTGCTCTTCGCC 60.449 63.158 0.00 0.00 41.55 5.54
1636 1674 1.153745 CCGAGGGACTTGCTCTTCG 60.154 63.158 0.00 0.00 41.55 3.79
1733 1777 2.432456 GTGCTGTGATCGTCGCCA 60.432 61.111 0.00 0.00 0.00 5.69
1751 1795 1.071605 CTTCTTCTTCTTGGACGGCG 58.928 55.000 4.80 4.80 0.00 6.46
1771 1815 2.123854 CCTCCCGATCTCGTCCCA 60.124 66.667 0.00 0.00 37.74 4.37
1776 1820 1.745232 CTATCCTCCTCCCGATCTCG 58.255 60.000 0.00 0.00 39.44 4.04
1783 1827 2.694616 AGAAGAGCTATCCTCCTCCC 57.305 55.000 0.00 0.00 41.74 4.30
1793 1843 1.490574 GCCAGAGGGAAGAAGAGCTA 58.509 55.000 0.00 0.00 35.59 3.32
1797 1847 1.475403 CTACGCCAGAGGGAAGAAGA 58.525 55.000 0.00 0.00 35.59 2.87
1798 1848 0.179097 GCTACGCCAGAGGGAAGAAG 60.179 60.000 0.00 0.00 35.59 2.85
1807 1860 1.754621 CTCCTCCAGCTACGCCAGA 60.755 63.158 0.00 0.00 0.00 3.86
2485 2538 1.382522 TCTTCAGATGGAAATGGCGC 58.617 50.000 0.00 0.00 34.44 6.53
2498 2551 3.719083 CACGAGTGCTTTGATCTTCAG 57.281 47.619 0.00 0.00 0.00 3.02
2516 2569 2.291365 TGTACATGCATGGATCAGCAC 58.709 47.619 29.41 9.69 44.49 4.40
2543 2596 2.038164 CAGATGGGATGACGATGGATGT 59.962 50.000 0.00 0.00 0.00 3.06
2564 2617 4.939509 ACGCAGTCCATGTAAAACATAC 57.060 40.909 0.00 0.00 32.64 2.39
2615 2671 4.440112 CCAAACTTGAAACTCAGTCCAACC 60.440 45.833 0.00 0.00 0.00 3.77
2621 2677 4.843728 TGAGACCAAACTTGAAACTCAGT 58.156 39.130 0.00 0.00 32.51 3.41
2671 2727 1.011968 AAAGCACGAATCGCTACGCA 61.012 50.000 1.15 0.00 39.29 5.24
2691 2747 2.594592 AACCTGTCCAGCCGCAAC 60.595 61.111 0.00 0.00 0.00 4.17
2872 2938 2.685380 CGCTCTGGGGAAGGGAGT 60.685 66.667 0.00 0.00 0.00 3.85
2923 2996 2.566724 CTCCTCTCCACTTTCAGCTCTT 59.433 50.000 0.00 0.00 0.00 2.85
2966 3039 2.315901 GAAAAACGTGGGAAGAATGCG 58.684 47.619 0.00 0.00 0.00 4.73
2974 3047 0.178984 GGGGAAGGAAAAACGTGGGA 60.179 55.000 0.00 0.00 0.00 4.37
3013 3086 5.541101 TCTGCACTAACCCTAGAACTACAAA 59.459 40.000 0.00 0.00 0.00 2.83
3150 3223 3.658725 ACATCTGCACTAACCCCTAGAT 58.341 45.455 0.00 0.00 0.00 1.98
3228 3301 0.699399 TCCGCCCACCCATCTAAAAA 59.301 50.000 0.00 0.00 0.00 1.94
3253 3326 4.282496 ACCATGTGTCAACACCCTAAAAA 58.718 39.130 10.59 0.00 45.88 1.94
3268 3341 6.183360 ACAAAAACCTAGTCAGAAACCATGTG 60.183 38.462 0.00 0.00 0.00 3.21
3303 3376 7.611467 TGTAATCAAAACATGAATCTACTGCCT 59.389 33.333 0.00 0.00 42.54 4.75
3471 3546 6.876789 ACCGATATGTATCACAGAACAAAACA 59.123 34.615 1.40 0.00 32.98 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.