Multiple sequence alignment - TraesCS2A01G496200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G496200 chr2A 100.000 3365 0 0 1 3365 727246727 727243363 0.000000e+00 6215.0
1 TraesCS2A01G496200 chr2A 91.756 558 12 10 74 621 727252100 727251567 0.000000e+00 745.0
2 TraesCS2A01G496200 chr2A 87.434 565 26 7 1 552 779694946 779694414 2.870000e-170 608.0
3 TraesCS2A01G496200 chr2A 81.020 490 75 16 1823 2303 727917769 727917289 1.140000e-99 374.0
4 TraesCS2A01G496200 chr2A 87.356 87 5 6 626 708 638786180 638786096 9.940000e-16 95.3
5 TraesCS2A01G496200 chr2A 86.420 81 7 2 2464 2540 125206173 125206093 5.980000e-13 86.1
6 TraesCS2A01G496200 chr2A 85.714 77 6 3 2463 2539 382260114 382260185 3.600000e-10 76.8
7 TraesCS2A01G496200 chr2D 96.539 1618 48 5 814 2426 592792038 592790424 0.000000e+00 2671.0
8 TraesCS2A01G496200 chr2D 88.866 485 36 9 2610 3087 592790126 592789653 6.260000e-162 580.0
9 TraesCS2A01G496200 chr2D 92.727 275 13 3 3092 3365 592789485 592789217 1.130000e-104 390.0
10 TraesCS2A01G496200 chr2D 84.416 77 5 4 2464 2540 524038024 524038093 6.020000e-08 69.4
11 TraesCS2A01G496200 chr2D 95.349 43 2 0 2505 2547 628995550 628995592 6.020000e-08 69.4
12 TraesCS2A01G496200 chr2B 95.057 1659 60 12 728 2376 718970618 718968972 0.000000e+00 2590.0
13 TraesCS2A01G496200 chr2B 80.083 482 79 15 1823 2294 719293457 719292983 3.210000e-90 342.0
14 TraesCS2A01G496200 chr2B 92.778 180 6 2 3188 3365 718968490 718968316 1.550000e-63 254.0
15 TraesCS2A01G496200 chr2B 85.202 223 25 5 2724 2940 718968921 718968701 4.370000e-54 222.0
16 TraesCS2A01G496200 chr2B 90.164 122 8 4 3087 3207 718968687 718968569 4.500000e-34 156.0
17 TraesCS2A01G496200 chr2B 85.542 83 10 1 2463 2543 392896282 392896200 5.980000e-13 86.1
18 TraesCS2A01G496200 chr1A 89.780 636 22 15 1 620 438339272 438339880 0.000000e+00 774.0
19 TraesCS2A01G496200 chr1A 89.291 635 29 8 1 621 201736037 201736646 0.000000e+00 760.0
20 TraesCS2A01G496200 chr1A 91.756 558 12 9 74 621 459176436 459175903 0.000000e+00 745.0
21 TraesCS2A01G496200 chr1A 90.502 558 18 2 74 621 459170610 459170078 0.000000e+00 704.0
22 TraesCS2A01G496200 chr1A 97.411 309 8 0 312 620 511619969 511619661 8.270000e-146 527.0
23 TraesCS2A01G496200 chr1A 82.353 85 12 3 623 705 70914479 70914562 1.680000e-08 71.3
24 TraesCS2A01G496200 chr1A 94.872 39 2 0 2463 2501 150450999 150450961 1.010000e-05 62.1
25 TraesCS2A01G496200 chr3A 91.756 558 12 9 74 621 732624870 732625403 0.000000e+00 745.0
26 TraesCS2A01G496200 chr3A 90.844 557 16 8 74 620 732630365 732630896 0.000000e+00 713.0
27 TraesCS2A01G496200 chr3A 88.750 80 7 2 2462 2540 394454874 394454952 2.760000e-16 97.1
28 TraesCS2A01G496200 chr7A 91.155 554 14 9 78 621 705305377 705304849 0.000000e+00 719.0
29 TraesCS2A01G496200 chr7A 90.323 558 18 3 75 621 114009819 114010351 0.000000e+00 699.0
30 TraesCS2A01G496200 chr7A 89.767 557 21 3 75 620 642927065 642927596 0.000000e+00 680.0
31 TraesCS2A01G496200 chr7A 79.518 498 84 18 1813 2303 478502748 478502262 4.160000e-89 339.0
32 TraesCS2A01G496200 chr7A 79.135 393 76 6 1094 1483 478503498 478503109 1.990000e-67 267.0
33 TraesCS2A01G496200 chr6A 89.946 557 21 4 75 621 359214295 359213764 0.000000e+00 686.0
34 TraesCS2A01G496200 chr6A 86.207 87 6 6 625 707 16440121 16440205 4.620000e-14 89.8
35 TraesCS2A01G496200 chr6A 86.207 87 6 6 626 707 401899361 401899446 4.620000e-14 89.8
36 TraesCS2A01G496200 chr3D 89.946 557 21 13 75 621 580665773 580665242 0.000000e+00 686.0
37 TraesCS2A01G496200 chr3D 87.591 548 31 11 75 621 111930434 111930945 4.800000e-168 601.0
38 TraesCS2A01G496200 chr3D 85.714 84 9 3 626 707 530385794 530385712 5.980000e-13 86.1
39 TraesCS2A01G496200 chr5A 87.184 632 40 10 1 620 578494901 578495503 0.000000e+00 680.0
40 TraesCS2A01G496200 chr5A 87.434 565 22 18 74 621 469658057 469658589 3.710000e-169 604.0
41 TraesCS2A01G496200 chr6B 86.677 638 42 22 2 621 359398322 359398934 0.000000e+00 667.0
42 TraesCS2A01G496200 chr6B 98.701 77 1 0 1 77 515073451 515073375 1.630000e-28 137.0
43 TraesCS2A01G496200 chr6B 89.041 73 6 2 626 698 225485 225555 4.620000e-14 89.8
44 TraesCS2A01G496200 chr6B 100.000 38 0 0 2505 2542 478695043 478695080 1.680000e-08 71.3
45 TraesCS2A01G496200 chr6B 91.489 47 4 0 2505 2551 288944935 288944889 7.790000e-07 65.8
46 TraesCS2A01G496200 chr5D 89.228 557 24 14 75 620 59931870 59931339 0.000000e+00 664.0
47 TraesCS2A01G496200 chr5D 85.882 85 8 4 628 709 396697069 396696986 1.660000e-13 87.9
48 TraesCS2A01G496200 chr5D 95.349 43 1 1 2460 2501 67699286 67699244 2.170000e-07 67.6
49 TraesCS2A01G496200 chr5D 94.872 39 2 0 2463 2501 170232274 170232236 1.010000e-05 62.1
50 TraesCS2A01G496200 chr5D 94.872 39 2 0 2505 2543 439217663 439217625 1.010000e-05 62.1
51 TraesCS2A01G496200 chr5D 88.889 45 5 0 2464 2508 245774919 245774963 4.690000e-04 56.5
52 TraesCS2A01G496200 chr7B 87.634 558 33 18 75 621 482052156 482051624 1.720000e-172 616.0
53 TraesCS2A01G496200 chr7B 80.000 500 78 20 1813 2303 431662987 431662501 1.920000e-92 350.0
54 TraesCS2A01G496200 chr7B 88.235 238 24 2 75 308 382587195 382587432 7.110000e-72 281.0
55 TraesCS2A01G496200 chr7B 76.963 382 66 15 1121 1483 431663726 431663348 7.360000e-47 198.0
56 TraesCS2A01G496200 chr7B 87.952 83 6 4 626 705 717027671 717027590 9.940000e-16 95.3
57 TraesCS2A01G496200 chr7B 86.047 86 8 4 626 708 750532363 750532447 4.620000e-14 89.8
58 TraesCS2A01G496200 chr7B 84.416 77 12 0 2464 2540 85782951 85782875 3.600000e-10 76.8
59 TraesCS2A01G496200 chr7D 87.500 560 29 14 75 621 106251970 106252501 2.870000e-170 608.0
60 TraesCS2A01G496200 chr7D 80.361 499 78 18 1813 2303 416237841 416237355 8.880000e-96 361.0
61 TraesCS2A01G496200 chr7D 80.203 394 70 8 1094 1483 416238591 416238202 4.250000e-74 289.0
62 TraesCS2A01G496200 chr7D 86.250 80 8 3 626 703 5376901 5376979 2.150000e-12 84.2
63 TraesCS2A01G496200 chr7D 84.884 86 7 6 626 706 84177752 84177836 7.740000e-12 82.4
64 TraesCS2A01G496200 chr7D 86.842 76 6 1 2464 2539 610814789 610814718 7.740000e-12 82.4
65 TraesCS2A01G496200 chr7D 100.000 36 0 0 2505 2540 578069872 578069837 2.170000e-07 67.6
66 TraesCS2A01G496200 chr7D 82.143 84 8 5 2464 2540 560577789 560577706 7.790000e-07 65.8
67 TraesCS2A01G496200 chr4B 86.071 560 39 10 75 620 666439002 666439536 1.750000e-157 566.0
68 TraesCS2A01G496200 chr4B 89.535 86 3 6 625 706 181683179 181683262 1.650000e-18 104.0
69 TraesCS2A01G496200 chr4B 90.566 53 5 0 2456 2508 421856040 421856092 1.680000e-08 71.3
70 TraesCS2A01G496200 chr4B 97.297 37 1 0 2504 2540 14265420 14265456 2.800000e-06 63.9
71 TraesCS2A01G496200 chr4B 93.182 44 1 2 2499 2540 670245948 670245991 2.800000e-06 63.9
72 TraesCS2A01G496200 chr4B 91.111 45 3 1 2505 2549 37856280 37856323 3.630000e-05 60.2
73 TraesCS2A01G496200 chr4B 83.582 67 7 4 2425 2490 99436879 99436942 3.630000e-05 60.2
74 TraesCS2A01G496200 chr3B 87.705 488 30 10 136 620 60606239 60605779 2.950000e-150 542.0
75 TraesCS2A01G496200 chr3B 88.372 86 4 5 626 706 704921748 704921832 7.680000e-17 99.0
76 TraesCS2A01G496200 chr3B 87.805 82 7 3 626 705 435967671 435967751 3.570000e-15 93.5
77 TraesCS2A01G496200 chr3B 84.146 82 9 2 2463 2540 321594224 321594143 3.600000e-10 76.8
78 TraesCS2A01G496200 chr5B 93.173 249 12 5 75 318 412435991 412435743 8.880000e-96 361.0
79 TraesCS2A01G496200 chr5B 93.478 46 3 0 2456 2501 392494405 392494360 6.020000e-08 69.4
80 TraesCS2A01G496200 chrUn 91.080 213 8 2 113 314 94142814 94142602 9.200000e-71 278.0
81 TraesCS2A01G496200 chrUn 95.000 40 2 0 2505 2544 19208426 19208465 2.800000e-06 63.9
82 TraesCS2A01G496200 chrUn 97.143 35 1 0 2505 2539 12084295 12084261 3.630000e-05 60.2
83 TraesCS2A01G496200 chrUn 97.143 35 1 0 2505 2539 59911158 59911192 3.630000e-05 60.2
84 TraesCS2A01G496200 chrUn 97.143 35 1 0 2505 2539 79072281 79072315 3.630000e-05 60.2
85 TraesCS2A01G496200 chrUn 97.143 35 1 0 2505 2539 144753748 144753714 3.630000e-05 60.2
86 TraesCS2A01G496200 chrUn 97.143 35 1 0 2505 2539 144790813 144790779 3.630000e-05 60.2
87 TraesCS2A01G496200 chrUn 97.143 35 1 0 2505 2539 144823127 144823093 3.630000e-05 60.2
88 TraesCS2A01G496200 chrUn 97.143 35 1 0 2505 2539 144863873 144863839 3.630000e-05 60.2
89 TraesCS2A01G496200 chrUn 97.143 35 1 0 2505 2539 144905346 144905312 3.630000e-05 60.2
90 TraesCS2A01G496200 chrUn 90.909 44 4 0 2505 2548 278783051 278783094 3.630000e-05 60.2
91 TraesCS2A01G496200 chrUn 90.909 44 4 0 2505 2548 317427195 317427152 3.630000e-05 60.2
92 TraesCS2A01G496200 chrUn 97.059 34 1 0 2457 2490 1522111 1522144 1.300000e-04 58.4
93 TraesCS2A01G496200 chrUn 90.909 44 2 2 2505 2548 4343300 4343341 1.300000e-04 58.4
94 TraesCS2A01G496200 chrUn 100.000 31 0 0 2460 2490 57135450 57135420 1.300000e-04 58.4
95 TraesCS2A01G496200 chrUn 97.059 34 1 0 2457 2490 97886516 97886549 1.300000e-04 58.4
96 TraesCS2A01G496200 chrUn 100.000 31 0 0 2460 2490 101532609 101532579 1.300000e-04 58.4
97 TraesCS2A01G496200 chrUn 90.909 44 2 2 2505 2548 123972428 123972469 1.300000e-04 58.4
98 TraesCS2A01G496200 chrUn 97.059 34 1 0 2457 2490 137099275 137099308 1.300000e-04 58.4
99 TraesCS2A01G496200 chrUn 90.698 43 3 1 2505 2547 38424794 38424753 4.690000e-04 56.5
100 TraesCS2A01G496200 chrUn 94.595 37 1 1 2461 2497 361756079 361756114 4.690000e-04 56.5
101 TraesCS2A01G496200 chrUn 100.000 29 0 0 2462 2490 23715011 23715039 2.000000e-03 54.7
102 TraesCS2A01G496200 chrUn 88.636 44 5 0 2463 2506 68241947 68241904 2.000000e-03 54.7
103 TraesCS2A01G496200 chrUn 88.889 45 3 2 2507 2550 134234202 134234159 2.000000e-03 54.7
104 TraesCS2A01G496200 chrUn 100.000 29 0 0 2463 2491 219156436 219156464 2.000000e-03 54.7
105 TraesCS2A01G496200 chrUn 96.970 33 0 1 2459 2490 283470144 283470112 2.000000e-03 54.7
106 TraesCS2A01G496200 chrUn 96.970 33 0 1 2459 2490 352045532 352045564 2.000000e-03 54.7
107 TraesCS2A01G496200 chrUn 100.000 28 0 0 2464 2491 66134058 66134085 6.000000e-03 52.8
108 TraesCS2A01G496200 chr6D 98.701 77 1 0 1 77 340229143 340229067 1.630000e-28 137.0
109 TraesCS2A01G496200 chr6D 88.235 85 5 5 626 706 12058574 12058491 2.760000e-16 97.1
110 TraesCS2A01G496200 chr6D 87.654 81 7 3 625 704 453463529 453463607 1.290000e-14 91.6
111 TraesCS2A01G496200 chr6D 85.714 91 6 6 623 707 386444479 386444568 4.620000e-14 89.8
112 TraesCS2A01G496200 chr6D 85.897 78 8 3 626 702 2434389 2434464 2.780000e-11 80.5
113 TraesCS2A01G496200 chr6D 85.507 69 6 3 626 692 151032612 151032546 6.020000e-08 69.4
114 TraesCS2A01G496200 chr6D 97.368 38 1 0 2464 2501 348647338 348647375 7.790000e-07 65.8
115 TraesCS2A01G496200 chr6D 95.000 40 2 0 2505 2544 36114598 36114637 2.800000e-06 63.9
116 TraesCS2A01G496200 chr6D 92.500 40 3 0 2462 2501 7397467 7397428 1.300000e-04 58.4
117 TraesCS2A01G496200 chr4D 97.436 78 1 1 1 77 506234464 506234387 7.580000e-27 132.0
118 TraesCS2A01G496200 chr4D 87.059 85 6 5 626 706 226385031 226384948 1.290000e-14 91.6
119 TraesCS2A01G496200 chr4D 88.525 61 5 2 2443 2501 116892226 116892166 4.660000e-09 73.1
120 TraesCS2A01G496200 chr4D 97.297 37 1 0 2505 2541 10976997 10976961 2.800000e-06 63.9
121 TraesCS2A01G496200 chr4D 97.297 37 1 0 2505 2541 72256212 72256248 2.800000e-06 63.9
122 TraesCS2A01G496200 chr4D 92.857 42 3 0 2460 2501 36835840 36835881 1.010000e-05 62.1
123 TraesCS2A01G496200 chr4D 94.872 39 2 0 2463 2501 504226805 504226767 1.010000e-05 62.1
124 TraesCS2A01G496200 chr4D 94.737 38 2 0 2505 2542 478510091 478510128 3.630000e-05 60.2
125 TraesCS2A01G496200 chr4D 94.737 38 2 0 2505 2542 488333921 488333884 3.630000e-05 60.2
126 TraesCS2A01G496200 chr4D 90.698 43 4 0 2505 2547 52629764 52629722 1.300000e-04 58.4
127 TraesCS2A01G496200 chr4D 90.698 43 4 0 2505 2547 58389286 58389244 1.300000e-04 58.4
128 TraesCS2A01G496200 chr4D 90.698 43 4 0 2464 2506 131123987 131123945 1.300000e-04 58.4
129 TraesCS2A01G496200 chr4D 88.889 45 5 0 2457 2501 39411315 39411359 4.690000e-04 56.5
130 TraesCS2A01G496200 chr4D 92.308 39 3 0 2463 2501 79220859 79220821 4.690000e-04 56.5
131 TraesCS2A01G496200 chr1B 87.059 85 6 5 626 706 682021443 682021360 1.290000e-14 91.6
132 TraesCS2A01G496200 chr1B 83.750 80 10 2 2463 2539 687182082 687182003 4.660000e-09 73.1
133 TraesCS2A01G496200 chr1B 100.000 37 0 0 2504 2540 45350906 45350942 6.020000e-08 69.4
134 TraesCS2A01G496200 chr1B 100.000 36 0 0 2505 2540 116277656 116277691 2.170000e-07 67.6
135 TraesCS2A01G496200 chr1B 97.436 39 1 0 2505 2543 146924188 146924150 2.170000e-07 67.6
136 TraesCS2A01G496200 chr1B 95.122 41 2 0 2512 2552 437833636 437833676 7.790000e-07 65.8
137 TraesCS2A01G496200 chr1D 85.714 77 8 2 2464 2540 124343058 124343131 1.000000e-10 78.7
138 TraesCS2A01G496200 chr1D 86.765 68 6 3 636 701 17614111 17614045 4.660000e-09 73.1
139 TraesCS2A01G496200 chr1D 94.872 39 2 0 2505 2543 69193933 69193895 1.010000e-05 62.1
140 TraesCS2A01G496200 chr1D 91.111 45 3 1 2458 2501 330770428 330770384 3.630000e-05 60.2
141 TraesCS2A01G496200 chr1D 94.737 38 2 0 2464 2501 478412436 478412473 3.630000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G496200 chr2A 727243363 727246727 3364 True 6215.000000 6215 100.000000 1 3365 1 chr2A.!!$R3 3364
1 TraesCS2A01G496200 chr2A 727251567 727252100 533 True 745.000000 745 91.756000 74 621 1 chr2A.!!$R4 547
2 TraesCS2A01G496200 chr2A 779694414 779694946 532 True 608.000000 608 87.434000 1 552 1 chr2A.!!$R6 551
3 TraesCS2A01G496200 chr2D 592789217 592792038 2821 True 1213.666667 2671 92.710667 814 3365 3 chr2D.!!$R1 2551
4 TraesCS2A01G496200 chr2B 718968316 718970618 2302 True 805.500000 2590 90.800250 728 3365 4 chr2B.!!$R3 2637
5 TraesCS2A01G496200 chr1A 438339272 438339880 608 False 774.000000 774 89.780000 1 620 1 chr1A.!!$F3 619
6 TraesCS2A01G496200 chr1A 201736037 201736646 609 False 760.000000 760 89.291000 1 621 1 chr1A.!!$F2 620
7 TraesCS2A01G496200 chr1A 459175903 459176436 533 True 745.000000 745 91.756000 74 621 1 chr1A.!!$R3 547
8 TraesCS2A01G496200 chr1A 459170078 459170610 532 True 704.000000 704 90.502000 74 621 1 chr1A.!!$R2 547
9 TraesCS2A01G496200 chr3A 732624870 732625403 533 False 745.000000 745 91.756000 74 621 1 chr3A.!!$F2 547
10 TraesCS2A01G496200 chr3A 732630365 732630896 531 False 713.000000 713 90.844000 74 620 1 chr3A.!!$F3 546
11 TraesCS2A01G496200 chr7A 705304849 705305377 528 True 719.000000 719 91.155000 78 621 1 chr7A.!!$R1 543
12 TraesCS2A01G496200 chr7A 114009819 114010351 532 False 699.000000 699 90.323000 75 621 1 chr7A.!!$F1 546
13 TraesCS2A01G496200 chr7A 642927065 642927596 531 False 680.000000 680 89.767000 75 620 1 chr7A.!!$F2 545
14 TraesCS2A01G496200 chr7A 478502262 478503498 1236 True 303.000000 339 79.326500 1094 2303 2 chr7A.!!$R2 1209
15 TraesCS2A01G496200 chr6A 359213764 359214295 531 True 686.000000 686 89.946000 75 621 1 chr6A.!!$R1 546
16 TraesCS2A01G496200 chr3D 580665242 580665773 531 True 686.000000 686 89.946000 75 621 1 chr3D.!!$R2 546
17 TraesCS2A01G496200 chr3D 111930434 111930945 511 False 601.000000 601 87.591000 75 621 1 chr3D.!!$F1 546
18 TraesCS2A01G496200 chr5A 578494901 578495503 602 False 680.000000 680 87.184000 1 620 1 chr5A.!!$F2 619
19 TraesCS2A01G496200 chr5A 469658057 469658589 532 False 604.000000 604 87.434000 74 621 1 chr5A.!!$F1 547
20 TraesCS2A01G496200 chr6B 359398322 359398934 612 False 667.000000 667 86.677000 2 621 1 chr6B.!!$F2 619
21 TraesCS2A01G496200 chr5D 59931339 59931870 531 True 664.000000 664 89.228000 75 620 1 chr5D.!!$R1 545
22 TraesCS2A01G496200 chr7B 482051624 482052156 532 True 616.000000 616 87.634000 75 621 1 chr7B.!!$R2 546
23 TraesCS2A01G496200 chr7B 431662501 431663726 1225 True 274.000000 350 78.481500 1121 2303 2 chr7B.!!$R4 1182
24 TraesCS2A01G496200 chr7D 106251970 106252501 531 False 608.000000 608 87.500000 75 621 1 chr7D.!!$F3 546
25 TraesCS2A01G496200 chr7D 416237355 416238591 1236 True 325.000000 361 80.282000 1094 2303 2 chr7D.!!$R4 1209
26 TraesCS2A01G496200 chr4B 666439002 666439536 534 False 566.000000 566 86.071000 75 620 1 chr4B.!!$F6 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 662 0.034337 ACAACGAATAGGGTGTGCGT 59.966 50.0 0.0 0.0 36.68 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2520 2658 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.0 5.23 0.0 44.66 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 188 0.036388 ACCGTTCCAGATCATTGCGT 60.036 50.000 0.00 0.00 0.00 5.24
277 302 0.035056 AGAGGGGCGATCAGGTTTTG 60.035 55.000 0.00 0.00 0.00 2.44
281 306 1.001393 GGCGATCAGGTTTTGGGGA 60.001 57.895 0.00 0.00 0.00 4.81
283 308 1.657751 GCGATCAGGTTTTGGGGAGC 61.658 60.000 0.00 0.00 0.00 4.70
288 313 2.597510 GGTTTTGGGGAGCGCACT 60.598 61.111 11.47 0.00 0.00 4.40
289 314 2.626780 GGTTTTGGGGAGCGCACTC 61.627 63.158 11.47 1.84 42.66 3.51
290 315 2.668212 TTTTGGGGAGCGCACTCG 60.668 61.111 11.47 0.00 44.48 4.18
494 520 7.341805 AGAATTCATGTTTCTAGTATGTGCCT 58.658 34.615 8.44 0.00 31.75 4.75
621 647 8.986477 AGTAATTTGCTCATATTTCCAACAAC 57.014 30.769 0.00 0.00 0.00 3.32
622 648 6.949578 AATTTGCTCATATTTCCAACAACG 57.050 33.333 0.00 0.00 0.00 4.10
623 649 5.697473 TTTGCTCATATTTCCAACAACGA 57.303 34.783 0.00 0.00 0.00 3.85
624 650 5.697473 TTGCTCATATTTCCAACAACGAA 57.303 34.783 0.00 0.00 0.00 3.85
625 651 5.895636 TGCTCATATTTCCAACAACGAAT 57.104 34.783 0.00 0.00 0.00 3.34
626 652 6.993786 TGCTCATATTTCCAACAACGAATA 57.006 33.333 0.00 0.00 0.00 1.75
627 653 7.015226 TGCTCATATTTCCAACAACGAATAG 57.985 36.000 0.00 0.00 0.00 1.73
628 654 6.038161 TGCTCATATTTCCAACAACGAATAGG 59.962 38.462 0.00 0.00 0.00 2.57
629 655 6.513393 GCTCATATTTCCAACAACGAATAGGG 60.513 42.308 0.00 0.00 0.00 3.53
630 656 6.419791 TCATATTTCCAACAACGAATAGGGT 58.580 36.000 0.00 0.00 0.00 4.34
631 657 6.317642 TCATATTTCCAACAACGAATAGGGTG 59.682 38.462 0.00 0.00 0.00 4.61
632 658 3.495434 TTCCAACAACGAATAGGGTGT 57.505 42.857 0.00 0.00 0.00 4.16
633 659 2.773487 TCCAACAACGAATAGGGTGTG 58.227 47.619 0.00 0.00 0.00 3.82
634 660 1.199097 CCAACAACGAATAGGGTGTGC 59.801 52.381 0.00 0.00 0.00 4.57
635 661 1.136085 CAACAACGAATAGGGTGTGCG 60.136 52.381 0.00 0.00 0.00 5.34
636 662 0.034337 ACAACGAATAGGGTGTGCGT 59.966 50.000 0.00 0.00 36.68 5.24
637 663 0.442310 CAACGAATAGGGTGTGCGTG 59.558 55.000 0.00 0.00 35.16 5.34
638 664 0.034337 AACGAATAGGGTGTGCGTGT 59.966 50.000 0.00 0.00 35.16 4.49
639 665 0.669318 ACGAATAGGGTGTGCGTGTG 60.669 55.000 0.00 0.00 33.52 3.82
640 666 1.358725 CGAATAGGGTGTGCGTGTGG 61.359 60.000 0.00 0.00 0.00 4.17
641 667 1.644786 GAATAGGGTGTGCGTGTGGC 61.645 60.000 0.00 0.00 43.96 5.01
654 680 4.395581 GCGTGTGGCATTTATAGAGATG 57.604 45.455 0.00 0.00 42.87 2.90
655 681 4.058124 GCGTGTGGCATTTATAGAGATGA 58.942 43.478 0.00 0.00 42.87 2.92
656 682 4.511454 GCGTGTGGCATTTATAGAGATGAA 59.489 41.667 0.00 0.00 42.87 2.57
657 683 5.180117 GCGTGTGGCATTTATAGAGATGAAT 59.820 40.000 0.00 0.00 42.87 2.57
658 684 6.596703 CGTGTGGCATTTATAGAGATGAATG 58.403 40.000 0.00 0.00 40.39 2.67
659 685 6.203530 CGTGTGGCATTTATAGAGATGAATGT 59.796 38.462 0.00 0.00 39.87 2.71
660 686 7.384932 CGTGTGGCATTTATAGAGATGAATGTA 59.615 37.037 0.00 0.00 39.87 2.29
661 687 9.224267 GTGTGGCATTTATAGAGATGAATGTAT 57.776 33.333 0.00 0.00 39.87 2.29
662 688 9.223099 TGTGGCATTTATAGAGATGAATGTATG 57.777 33.333 0.00 0.00 39.87 2.39
663 689 8.180267 GTGGCATTTATAGAGATGAATGTATGC 58.820 37.037 0.00 0.00 39.87 3.14
664 690 7.064966 TGGCATTTATAGAGATGAATGTATGCG 59.935 37.037 0.00 0.00 39.87 4.73
665 691 7.065085 GGCATTTATAGAGATGAATGTATGCGT 59.935 37.037 0.00 0.00 39.87 5.24
666 692 7.901889 GCATTTATAGAGATGAATGTATGCGTG 59.098 37.037 0.00 0.00 39.87 5.34
667 693 8.929746 CATTTATAGAGATGAATGTATGCGTGT 58.070 33.333 0.00 0.00 35.38 4.49
670 696 9.573133 TTATAGAGATGAATGTATGCGTGTATG 57.427 33.333 0.00 0.00 0.00 2.39
671 697 5.847304 AGAGATGAATGTATGCGTGTATGT 58.153 37.500 0.00 0.00 0.00 2.29
672 698 6.981722 AGAGATGAATGTATGCGTGTATGTA 58.018 36.000 0.00 0.00 0.00 2.29
673 699 7.606349 AGAGATGAATGTATGCGTGTATGTAT 58.394 34.615 0.00 0.00 0.00 2.29
674 700 7.543520 AGAGATGAATGTATGCGTGTATGTATG 59.456 37.037 0.00 0.00 0.00 2.39
675 701 7.378181 AGATGAATGTATGCGTGTATGTATGA 58.622 34.615 0.00 0.00 0.00 2.15
676 702 7.543520 AGATGAATGTATGCGTGTATGTATGAG 59.456 37.037 0.00 0.00 0.00 2.90
677 703 5.405269 TGAATGTATGCGTGTATGTATGAGC 59.595 40.000 0.00 0.00 0.00 4.26
678 704 3.305110 TGTATGCGTGTATGTATGAGCG 58.695 45.455 0.00 0.00 0.00 5.03
679 705 1.139989 ATGCGTGTATGTATGAGCGC 58.860 50.000 0.00 0.00 44.29 5.92
680 706 0.102300 TGCGTGTATGTATGAGCGCT 59.898 50.000 11.27 11.27 44.34 5.92
681 707 1.209128 GCGTGTATGTATGAGCGCTT 58.791 50.000 13.26 0.00 41.37 4.68
682 708 1.071239 GCGTGTATGTATGAGCGCTTG 60.071 52.381 13.26 0.00 41.37 4.01
683 709 1.071239 CGTGTATGTATGAGCGCTTGC 60.071 52.381 13.26 0.00 39.58 4.01
684 710 1.071239 GTGTATGTATGAGCGCTTGCG 60.071 52.381 13.26 10.90 45.69 4.85
685 711 1.202359 TGTATGTATGAGCGCTTGCGA 60.202 47.619 19.55 0.00 45.69 5.10
686 712 2.061773 GTATGTATGAGCGCTTGCGAT 58.938 47.619 19.55 13.03 45.69 4.58
687 713 1.586422 ATGTATGAGCGCTTGCGATT 58.414 45.000 19.55 5.69 45.69 3.34
688 714 1.368641 TGTATGAGCGCTTGCGATTT 58.631 45.000 19.55 7.01 45.69 2.17
689 715 1.062440 TGTATGAGCGCTTGCGATTTG 59.938 47.619 19.55 0.00 45.69 2.32
690 716 1.062587 GTATGAGCGCTTGCGATTTGT 59.937 47.619 19.55 5.35 45.69 2.83
691 717 1.368641 ATGAGCGCTTGCGATTTGTA 58.631 45.000 19.55 1.43 45.69 2.41
692 718 0.442310 TGAGCGCTTGCGATTTGTAC 59.558 50.000 19.55 0.52 45.69 2.90
693 719 0.584054 GAGCGCTTGCGATTTGTACG 60.584 55.000 19.55 0.00 45.69 3.67
694 720 1.131826 GCGCTTGCGATTTGTACGT 59.868 52.632 19.55 0.00 0.00 3.57
695 721 1.120147 GCGCTTGCGATTTGTACGTG 61.120 55.000 19.55 0.00 0.00 4.49
696 722 0.162933 CGCTTGCGATTTGTACGTGT 59.837 50.000 9.60 0.00 0.00 4.49
697 723 1.397945 CGCTTGCGATTTGTACGTGTT 60.398 47.619 9.60 0.00 0.00 3.32
698 724 2.159947 CGCTTGCGATTTGTACGTGTTA 60.160 45.455 9.60 0.00 0.00 2.41
699 725 3.662195 CGCTTGCGATTTGTACGTGTTAA 60.662 43.478 9.60 0.00 0.00 2.01
700 726 4.212911 GCTTGCGATTTGTACGTGTTAAA 58.787 39.130 0.00 0.00 0.00 1.52
701 727 4.671516 GCTTGCGATTTGTACGTGTTAAAA 59.328 37.500 0.00 0.00 0.00 1.52
702 728 5.171695 GCTTGCGATTTGTACGTGTTAAAAA 59.828 36.000 0.00 0.00 0.00 1.94
721 747 2.270352 AAAAGACGGTGATGAAGCCA 57.730 45.000 0.00 0.00 0.00 4.75
722 748 1.523758 AAAGACGGTGATGAAGCCAC 58.476 50.000 0.00 0.00 0.00 5.01
726 752 3.578456 GGTGATGAAGCCACCGTG 58.422 61.111 0.00 0.00 43.80 4.94
751 777 8.750298 TGTAGAAACACCTTGGTAAAAATTGAA 58.250 29.630 0.00 0.00 0.00 2.69
756 782 8.601845 AACACCTTGGTAAAAATTGAATAAGC 57.398 30.769 0.00 0.00 0.00 3.09
777 807 3.745458 GCAAAAATCCAATGCCTCGAAAA 59.255 39.130 0.00 0.00 34.03 2.29
778 808 4.377328 GCAAAAATCCAATGCCTCGAAAAC 60.377 41.667 0.00 0.00 34.03 2.43
780 810 1.474330 ATCCAATGCCTCGAAAACCC 58.526 50.000 0.00 0.00 0.00 4.11
782 812 0.527565 CCAATGCCTCGAAAACCCAG 59.472 55.000 0.00 0.00 0.00 4.45
783 813 1.247567 CAATGCCTCGAAAACCCAGT 58.752 50.000 0.00 0.00 0.00 4.00
784 814 1.068333 CAATGCCTCGAAAACCCAGTG 60.068 52.381 0.00 0.00 0.00 3.66
785 815 0.110486 ATGCCTCGAAAACCCAGTGT 59.890 50.000 0.00 0.00 0.00 3.55
786 816 0.817634 TGCCTCGAAAACCCAGTGTG 60.818 55.000 0.00 0.00 0.00 3.82
787 817 0.818040 GCCTCGAAAACCCAGTGTGT 60.818 55.000 0.00 0.00 0.00 3.72
788 818 0.944386 CCTCGAAAACCCAGTGTGTG 59.056 55.000 0.00 0.00 0.00 3.82
789 819 0.307760 CTCGAAAACCCAGTGTGTGC 59.692 55.000 0.00 0.00 0.00 4.57
790 820 0.107410 TCGAAAACCCAGTGTGTGCT 60.107 50.000 0.00 0.00 0.00 4.40
802 833 2.159184 AGTGTGTGCTCCATATCTGACG 60.159 50.000 0.00 0.00 0.00 4.35
821 853 4.806342 ACGAAGTTGCGTTTAGAAACAT 57.194 36.364 6.00 0.00 37.78 2.71
833 865 4.742438 TTAGAAACATGAAGCGTTCACC 57.258 40.909 0.00 0.00 43.48 4.02
845 877 7.205737 TGAAGCGTTCACCGAGTATATATAA 57.794 36.000 0.00 0.00 39.56 0.98
883 915 1.526986 CGCGCTAAACAACAATCGGAG 60.527 52.381 5.56 0.00 0.00 4.63
971 1008 1.003355 CCCACCCACAGCAGTAGTG 60.003 63.158 5.02 5.02 36.76 2.74
1221 1261 0.388649 CGCTCTACAACTTCGCCAGT 60.389 55.000 0.00 0.00 37.30 4.00
1378 1418 3.402681 CCACGGGGCTCATGACCT 61.403 66.667 12.27 0.00 42.43 3.85
1578 1634 2.523507 CGCGCTGCTCTTCATCCTG 61.524 63.158 5.56 0.00 0.00 3.86
1788 1895 2.945668 GCTGGTGAAGATAACATGGGAC 59.054 50.000 0.00 0.00 0.00 4.46
1791 1898 3.195661 GGTGAAGATAACATGGGACGAC 58.804 50.000 0.00 0.00 0.00 4.34
2133 2240 4.275508 CCCATCGGCATCCTGGGG 62.276 72.222 5.25 0.00 44.99 4.96
2385 2492 9.294030 CTGTAAATTACTGAATTGAATGCTTCC 57.706 33.333 4.67 0.00 35.38 3.46
2386 2493 9.023962 TGTAAATTACTGAATTGAATGCTTCCT 57.976 29.630 4.67 0.00 35.38 3.36
2405 2512 0.249699 TGCGTTGCATCCCGGTATAG 60.250 55.000 0.00 0.00 31.71 1.31
2448 2555 9.868160 TCTATATCTGTAGGAAAGAAGATCACA 57.132 33.333 0.00 0.00 31.90 3.58
2451 2558 7.673641 ATCTGTAGGAAAGAAGATCACATCT 57.326 36.000 0.00 0.00 42.61 2.90
2452 2559 6.871844 TCTGTAGGAAAGAAGATCACATCTG 58.128 40.000 0.00 0.00 40.13 2.90
2453 2560 6.438741 TCTGTAGGAAAGAAGATCACATCTGT 59.561 38.462 0.00 0.00 40.13 3.41
2454 2561 7.615757 TCTGTAGGAAAGAAGATCACATCTGTA 59.384 37.037 0.00 0.00 40.13 2.74
2455 2562 7.776107 TGTAGGAAAGAAGATCACATCTGTAG 58.224 38.462 0.00 0.00 40.13 2.74
2456 2563 6.865834 AGGAAAGAAGATCACATCTGTAGT 57.134 37.500 0.00 0.00 40.13 2.73
2457 2564 6.638610 AGGAAAGAAGATCACATCTGTAGTG 58.361 40.000 0.00 0.00 40.13 2.74
2475 2582 3.025262 AGTGATTTCTACTCCCTCCGTC 58.975 50.000 0.00 0.00 0.00 4.79
2477 2584 1.337387 GATTTCTACTCCCTCCGTCCG 59.663 57.143 0.00 0.00 0.00 4.79
2478 2585 0.329261 TTTCTACTCCCTCCGTCCGA 59.671 55.000 0.00 0.00 0.00 4.55
2481 2588 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
2490 2597 2.928116 CTCCGTCCGAAAATACTTGTCC 59.072 50.000 0.00 0.00 0.00 4.02
2491 2598 1.657094 CCGTCCGAAAATACTTGTCCG 59.343 52.381 0.00 0.00 0.00 4.79
2492 2599 1.657094 CGTCCGAAAATACTTGTCCGG 59.343 52.381 0.00 0.00 38.41 5.14
2495 2602 1.065998 CCGAAAATACTTGTCCGGGGA 60.066 52.381 0.00 0.00 33.94 4.81
2497 2604 3.275999 CGAAAATACTTGTCCGGGGAAT 58.724 45.455 0.00 0.00 0.00 3.01
2501 2608 1.659022 TACTTGTCCGGGGAATGGAA 58.341 50.000 0.00 0.00 37.23 3.53
2502 2609 0.774908 ACTTGTCCGGGGAATGGAAA 59.225 50.000 0.00 0.00 37.23 3.13
2508 2646 4.615513 TGTCCGGGGAATGGAAATATTTT 58.384 39.130 0.00 0.00 37.23 1.82
2510 2648 6.195700 TGTCCGGGGAATGGAAATATTTTTA 58.804 36.000 0.00 0.00 37.23 1.52
2515 2653 6.183360 CGGGGAATGGAAATATTTTTACGACA 60.183 38.462 1.43 0.00 0.00 4.35
2526 2664 9.777575 AAATATTTTTACGACAAGTATTTCCGG 57.222 29.630 0.00 0.00 34.88 5.14
2540 2678 0.466922 TTCCGGACGGAGGGAGTATC 60.467 60.000 13.64 0.00 46.06 2.24
2541 2679 1.152819 CCGGACGGAGGGAGTATCA 60.153 63.158 4.40 0.00 34.77 2.15
2542 2680 1.173444 CCGGACGGAGGGAGTATCAG 61.173 65.000 4.40 0.00 34.77 2.90
2543 2681 1.173444 CGGACGGAGGGAGTATCAGG 61.173 65.000 0.00 0.00 36.25 3.86
2544 2682 1.465200 GGACGGAGGGAGTATCAGGC 61.465 65.000 0.00 0.00 36.25 4.85
2545 2683 0.755698 GACGGAGGGAGTATCAGGCA 60.756 60.000 0.00 0.00 36.25 4.75
2547 2685 0.830648 CGGAGGGAGTATCAGGCAAA 59.169 55.000 0.00 0.00 36.25 3.68
2548 2686 1.417890 CGGAGGGAGTATCAGGCAAAT 59.582 52.381 0.00 0.00 36.25 2.32
2550 2688 3.555168 CGGAGGGAGTATCAGGCAAATAC 60.555 52.174 2.13 2.13 36.25 1.89
2551 2689 3.244596 GGAGGGAGTATCAGGCAAATACC 60.245 52.174 5.87 0.00 36.25 2.73
2552 2690 2.711547 AGGGAGTATCAGGCAAATACCC 59.288 50.000 0.00 0.00 36.25 3.69
2559 2697 1.380380 AGGCAAATACCCTGCTGGC 60.380 57.895 3.63 0.00 39.82 4.85
2560 2698 1.380380 GGCAAATACCCTGCTGGCT 60.380 57.895 3.63 0.00 39.82 4.75
2561 2699 1.669999 GGCAAATACCCTGCTGGCTG 61.670 60.000 3.63 0.00 39.82 4.85
2562 2700 1.811860 CAAATACCCTGCTGGCTGC 59.188 57.895 9.67 9.67 43.25 5.25
2564 2702 0.682209 AAATACCCTGCTGGCTGCTG 60.682 55.000 17.45 16.04 43.37 4.41
2565 2703 1.856539 AATACCCTGCTGGCTGCTGT 61.857 55.000 17.45 13.34 43.37 4.40
2566 2704 2.547640 ATACCCTGCTGGCTGCTGTG 62.548 60.000 17.45 10.66 43.37 3.66
2568 2706 4.655647 CCTGCTGGCTGCTGTGGT 62.656 66.667 17.45 0.00 43.37 4.16
2586 2741 4.832266 TGTGGTAGGAAAATTTGACTGCAT 59.168 37.500 10.90 0.00 0.00 3.96
2676 2936 1.267806 CCAAACAGTGGTCATGCTCAC 59.732 52.381 9.34 9.34 43.20 3.51
2678 2938 1.888215 AACAGTGGTCATGCTCACAG 58.112 50.000 16.65 12.51 36.43 3.66
2682 2942 1.151668 GTGGTCATGCTCACAGACAC 58.848 55.000 11.62 0.00 34.04 3.67
2683 2943 0.758123 TGGTCATGCTCACAGACACA 59.242 50.000 0.00 0.00 34.04 3.72
2684 2944 1.348696 TGGTCATGCTCACAGACACAT 59.651 47.619 0.00 0.00 34.04 3.21
2685 2945 1.736126 GGTCATGCTCACAGACACATG 59.264 52.381 0.00 0.00 40.97 3.21
2686 2946 1.736126 GTCATGCTCACAGACACATGG 59.264 52.381 0.00 0.00 40.22 3.66
2687 2947 1.348696 TCATGCTCACAGACACATGGT 59.651 47.619 0.00 0.00 40.22 3.55
2746 3006 1.002430 TCAGTGATGAGGCAGTTGGAC 59.998 52.381 0.00 0.00 0.00 4.02
2750 3010 0.737219 GATGAGGCAGTTGGACATGC 59.263 55.000 0.00 0.00 41.80 4.06
2766 3026 0.332632 ATGCCTGGGCTTGTATGTGT 59.667 50.000 13.05 0.00 42.51 3.72
2767 3027 0.322456 TGCCTGGGCTTGTATGTGTC 60.322 55.000 13.05 0.00 42.51 3.67
2826 3092 5.938710 ACATCAGCATCATTCATCTACCATC 59.061 40.000 0.00 0.00 0.00 3.51
2845 3111 1.295423 CCAACTACTGACCCACCCG 59.705 63.158 0.00 0.00 0.00 5.28
2855 3121 2.781631 ACCCACCCGGTAATTCAGT 58.218 52.632 0.00 0.00 45.97 3.41
2856 3122 1.069775 ACCCACCCGGTAATTCAGTT 58.930 50.000 0.00 0.00 45.97 3.16
2894 3161 8.615211 TCAGTAGAAATATTCACAACATCATGC 58.385 33.333 0.00 0.00 0.00 4.06
2912 3179 0.108945 GCTGCAACCAATCTGCCTTC 60.109 55.000 0.00 0.00 39.13 3.46
2925 3192 0.404040 TGCCTTCCCTTCGTCCATTT 59.596 50.000 0.00 0.00 0.00 2.32
2933 3200 1.533625 CTTCGTCCATTTGAGGCCAA 58.466 50.000 5.01 0.00 0.00 4.52
2988 3255 9.398170 CAAATACACTTTTCCTGATTTACAGTG 57.602 33.333 0.00 0.00 44.40 3.66
2991 3258 5.885912 ACACTTTTCCTGATTTACAGTGTGT 59.114 36.000 5.88 0.00 44.40 3.72
2998 3265 8.918202 TTCCTGATTTACAGTGTGTTTTCTAT 57.082 30.769 5.88 0.00 44.40 1.98
3005 3272 5.668558 ACAGTGTGTTTTCTATTTCGTCC 57.331 39.130 0.00 0.00 0.00 4.79
3007 3274 5.007332 ACAGTGTGTTTTCTATTTCGTCCAC 59.993 40.000 0.00 0.00 0.00 4.02
3011 3278 6.201425 GTGTGTTTTCTATTTCGTCCACAGTA 59.799 38.462 0.00 0.00 32.78 2.74
3024 3291 4.501915 CGTCCACAGTAAACCAAGGTAGAA 60.502 45.833 0.00 0.00 0.00 2.10
3065 3332 8.109705 TCTTTAGTTTCTGCAAATCAATGCTA 57.890 30.769 0.67 0.00 46.54 3.49
3083 3350 7.922278 TCAATGCTAAATAAATTCCAGCATGTC 59.078 33.333 18.21 0.00 42.60 3.06
3092 3359 3.497103 TTCCAGCATGTCCATCCATAG 57.503 47.619 0.00 0.00 0.00 2.23
3095 3362 2.307980 CCAGCATGTCCATCCATAGGAT 59.692 50.000 0.00 0.00 44.21 3.24
3128 3557 2.203337 TGGAGGCCTGCAACACAC 60.203 61.111 26.49 0.00 0.00 3.82
3136 3566 0.817634 CCTGCAACACACTTTCCCGA 60.818 55.000 0.00 0.00 0.00 5.14
3227 3752 0.108567 GAAACTCGGCCAGTCTCCTC 60.109 60.000 2.24 0.00 32.30 3.71
3228 3753 0.543174 AAACTCGGCCAGTCTCCTCT 60.543 55.000 2.24 0.00 32.30 3.69
3229 3754 0.968393 AACTCGGCCAGTCTCCTCTC 60.968 60.000 2.24 0.00 32.30 3.20
3230 3755 2.043852 TCGGCCAGTCTCCTCTCC 60.044 66.667 2.24 0.00 0.00 3.71
3231 3756 2.043450 CGGCCAGTCTCCTCTCCT 60.043 66.667 2.24 0.00 0.00 3.69
3247 3772 6.907961 TCCTCTCCTTGCATACTAGTACTAA 58.092 40.000 4.31 0.36 0.00 2.24
3251 3776 8.534954 TCTCCTTGCATACTAGTACTAAATGT 57.465 34.615 18.97 10.91 0.00 2.71
3254 3779 7.563924 TCCTTGCATACTAGTACTAAATGTCCT 59.436 37.037 18.97 0.80 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 188 0.320771 GGAGAAGACTTGCTTGGCGA 60.321 55.000 0.00 0.00 36.83 5.54
292 317 3.474034 GTCGCTGTCAGCAGTCGC 61.474 66.667 24.13 5.62 42.58 5.19
293 318 3.168604 CGTCGCTGTCAGCAGTCG 61.169 66.667 24.13 19.52 42.58 4.18
294 319 2.083522 GTCGTCGCTGTCAGCAGTC 61.084 63.158 24.13 13.05 42.58 3.51
295 320 2.049985 GTCGTCGCTGTCAGCAGT 60.050 61.111 24.13 0.00 42.58 4.40
296 321 1.799519 GAGTCGTCGCTGTCAGCAG 60.800 63.158 24.13 16.22 42.58 4.24
297 322 2.255554 GAGTCGTCGCTGTCAGCA 59.744 61.111 24.13 9.04 42.58 4.41
298 323 2.872001 CGAGTCGTCGCTGTCAGC 60.872 66.667 15.22 15.22 39.88 4.26
494 520 6.231258 AGCAGATGAACAGATCACATCTAA 57.769 37.500 17.55 0.00 45.61 2.10
544 570 8.209584 AGATAAATCATGACTACAGCAACAGAT 58.790 33.333 0.00 0.00 0.00 2.90
621 647 1.358725 CCACACGCACACCCTATTCG 61.359 60.000 0.00 0.00 0.00 3.34
622 648 1.644786 GCCACACGCACACCCTATTC 61.645 60.000 0.00 0.00 37.47 1.75
623 649 1.674322 GCCACACGCACACCCTATT 60.674 57.895 0.00 0.00 37.47 1.73
624 650 2.046314 GCCACACGCACACCCTAT 60.046 61.111 0.00 0.00 37.47 2.57
625 651 3.551407 TGCCACACGCACACCCTA 61.551 61.111 0.00 0.00 44.64 3.53
633 659 4.058124 TCATCTCTATAAATGCCACACGC 58.942 43.478 0.00 0.00 38.31 5.34
634 660 6.203530 ACATTCATCTCTATAAATGCCACACG 59.796 38.462 0.00 0.00 33.42 4.49
635 661 7.502120 ACATTCATCTCTATAAATGCCACAC 57.498 36.000 0.00 0.00 33.42 3.82
636 662 9.223099 CATACATTCATCTCTATAAATGCCACA 57.777 33.333 0.00 0.00 33.42 4.17
637 663 8.180267 GCATACATTCATCTCTATAAATGCCAC 58.820 37.037 0.00 0.00 33.42 5.01
638 664 7.064966 CGCATACATTCATCTCTATAAATGCCA 59.935 37.037 0.00 0.00 34.07 4.92
639 665 7.065085 ACGCATACATTCATCTCTATAAATGCC 59.935 37.037 0.00 0.00 34.07 4.40
640 666 7.901889 CACGCATACATTCATCTCTATAAATGC 59.098 37.037 0.00 0.00 33.42 3.56
641 667 8.929746 ACACGCATACATTCATCTCTATAAATG 58.070 33.333 0.00 0.00 35.68 2.32
644 670 9.573133 CATACACGCATACATTCATCTCTATAA 57.427 33.333 0.00 0.00 0.00 0.98
645 671 8.739972 ACATACACGCATACATTCATCTCTATA 58.260 33.333 0.00 0.00 0.00 1.31
646 672 7.606349 ACATACACGCATACATTCATCTCTAT 58.394 34.615 0.00 0.00 0.00 1.98
647 673 6.981722 ACATACACGCATACATTCATCTCTA 58.018 36.000 0.00 0.00 0.00 2.43
648 674 5.847304 ACATACACGCATACATTCATCTCT 58.153 37.500 0.00 0.00 0.00 3.10
649 675 7.542130 TCATACATACACGCATACATTCATCTC 59.458 37.037 0.00 0.00 0.00 2.75
650 676 7.378181 TCATACATACACGCATACATTCATCT 58.622 34.615 0.00 0.00 0.00 2.90
651 677 7.581011 TCATACATACACGCATACATTCATC 57.419 36.000 0.00 0.00 0.00 2.92
652 678 6.091305 GCTCATACATACACGCATACATTCAT 59.909 38.462 0.00 0.00 0.00 2.57
653 679 5.405269 GCTCATACATACACGCATACATTCA 59.595 40.000 0.00 0.00 0.00 2.57
654 680 5.443301 CGCTCATACATACACGCATACATTC 60.443 44.000 0.00 0.00 0.00 2.67
655 681 4.385748 CGCTCATACATACACGCATACATT 59.614 41.667 0.00 0.00 0.00 2.71
656 682 3.920412 CGCTCATACATACACGCATACAT 59.080 43.478 0.00 0.00 0.00 2.29
657 683 3.305110 CGCTCATACATACACGCATACA 58.695 45.455 0.00 0.00 0.00 2.29
658 684 2.090658 GCGCTCATACATACACGCATAC 59.909 50.000 0.00 0.00 45.25 2.39
659 685 2.324860 GCGCTCATACATACACGCATA 58.675 47.619 0.00 0.00 45.25 3.14
660 686 1.139989 GCGCTCATACATACACGCAT 58.860 50.000 0.00 0.00 45.25 4.73
661 687 2.588731 GCGCTCATACATACACGCA 58.411 52.632 0.00 0.00 45.25 5.24
662 688 1.071239 CAAGCGCTCATACATACACGC 60.071 52.381 12.06 0.00 46.20 5.34
663 689 1.071239 GCAAGCGCTCATACATACACG 60.071 52.381 12.06 0.00 34.30 4.49
664 690 1.071239 CGCAAGCGCTCATACATACAC 60.071 52.381 12.06 0.00 35.30 2.90
665 691 1.202359 TCGCAAGCGCTCATACATACA 60.202 47.619 12.06 0.00 39.59 2.29
666 692 1.487482 TCGCAAGCGCTCATACATAC 58.513 50.000 12.06 0.00 39.59 2.39
667 693 2.438868 ATCGCAAGCGCTCATACATA 57.561 45.000 12.06 0.00 39.59 2.29
668 694 1.586422 AATCGCAAGCGCTCATACAT 58.414 45.000 12.06 0.00 39.59 2.29
669 695 1.062440 CAAATCGCAAGCGCTCATACA 59.938 47.619 12.06 0.00 39.59 2.29
670 696 1.062587 ACAAATCGCAAGCGCTCATAC 59.937 47.619 12.06 0.00 39.59 2.39
671 697 1.368641 ACAAATCGCAAGCGCTCATA 58.631 45.000 12.06 0.00 39.59 2.15
672 698 1.062587 GTACAAATCGCAAGCGCTCAT 59.937 47.619 12.06 0.00 39.59 2.90
673 699 0.442310 GTACAAATCGCAAGCGCTCA 59.558 50.000 12.06 0.00 39.59 4.26
674 700 0.584054 CGTACAAATCGCAAGCGCTC 60.584 55.000 12.06 0.00 39.59 5.03
675 701 1.289109 ACGTACAAATCGCAAGCGCT 61.289 50.000 2.64 2.64 39.59 5.92
676 702 1.120147 CACGTACAAATCGCAAGCGC 61.120 55.000 9.97 0.00 39.59 5.92
677 703 0.162933 ACACGTACAAATCGCAAGCG 59.837 50.000 8.36 8.36 41.35 4.68
678 704 2.309898 AACACGTACAAATCGCAAGC 57.690 45.000 0.00 0.00 37.18 4.01
679 705 6.719915 TTTTTAACACGTACAAATCGCAAG 57.280 33.333 0.00 0.00 0.00 4.01
701 727 2.293399 GTGGCTTCATCACCGTCTTTTT 59.707 45.455 0.00 0.00 0.00 1.94
702 728 1.880027 GTGGCTTCATCACCGTCTTTT 59.120 47.619 0.00 0.00 0.00 2.27
703 729 1.523758 GTGGCTTCATCACCGTCTTT 58.476 50.000 0.00 0.00 0.00 2.52
704 730 0.321653 GGTGGCTTCATCACCGTCTT 60.322 55.000 0.00 0.00 44.16 3.01
705 731 1.296715 GGTGGCTTCATCACCGTCT 59.703 57.895 0.00 0.00 44.16 4.18
706 732 3.890674 GGTGGCTTCATCACCGTC 58.109 61.111 0.00 0.00 44.16 4.79
710 736 1.067142 TCTACACGGTGGCTTCATCAC 60.067 52.381 13.48 0.00 34.61 3.06
711 737 1.262417 TCTACACGGTGGCTTCATCA 58.738 50.000 13.48 0.00 0.00 3.07
712 738 2.380084 TTCTACACGGTGGCTTCATC 57.620 50.000 13.48 0.00 0.00 2.92
713 739 2.224426 TGTTTCTACACGGTGGCTTCAT 60.224 45.455 13.48 0.00 0.00 2.57
714 740 1.139256 TGTTTCTACACGGTGGCTTCA 59.861 47.619 13.48 1.54 0.00 3.02
715 741 1.529865 GTGTTTCTACACGGTGGCTTC 59.470 52.381 13.48 0.00 44.66 3.86
716 742 1.589803 GTGTTTCTACACGGTGGCTT 58.410 50.000 13.48 0.00 44.66 4.35
717 743 3.300711 GTGTTTCTACACGGTGGCT 57.699 52.632 13.48 0.00 44.66 4.75
725 751 8.294954 TCAATTTTTACCAAGGTGTTTCTACA 57.705 30.769 1.07 0.00 0.00 2.74
726 752 9.758651 ATTCAATTTTTACCAAGGTGTTTCTAC 57.241 29.630 1.07 0.00 0.00 2.59
745 771 7.612633 AGGCATTGGATTTTTGCTTATTCAATT 59.387 29.630 0.00 0.00 36.62 2.32
748 774 6.052405 AGGCATTGGATTTTTGCTTATTCA 57.948 33.333 0.00 0.00 36.62 2.57
749 775 5.232838 CGAGGCATTGGATTTTTGCTTATTC 59.767 40.000 0.00 0.00 36.62 1.75
751 777 4.402155 TCGAGGCATTGGATTTTTGCTTAT 59.598 37.500 0.00 0.00 36.62 1.73
753 779 2.562298 TCGAGGCATTGGATTTTTGCTT 59.438 40.909 0.00 0.00 36.62 3.91
756 782 4.152223 GGTTTTCGAGGCATTGGATTTTTG 59.848 41.667 0.00 0.00 0.00 2.44
777 807 1.210478 GATATGGAGCACACACTGGGT 59.790 52.381 0.00 0.00 0.00 4.51
778 808 1.487976 AGATATGGAGCACACACTGGG 59.512 52.381 0.00 0.00 0.00 4.45
780 810 3.193263 GTCAGATATGGAGCACACACTG 58.807 50.000 0.00 0.00 0.00 3.66
782 812 2.159240 TCGTCAGATATGGAGCACACAC 60.159 50.000 0.00 0.00 0.00 3.82
783 813 2.099405 TCGTCAGATATGGAGCACACA 58.901 47.619 0.00 0.00 0.00 3.72
784 814 2.871182 TCGTCAGATATGGAGCACAC 57.129 50.000 0.00 0.00 0.00 3.82
785 815 2.760650 ACTTCGTCAGATATGGAGCACA 59.239 45.455 0.00 0.00 0.00 4.57
786 816 3.444703 ACTTCGTCAGATATGGAGCAC 57.555 47.619 0.00 0.00 0.00 4.40
787 817 3.785486 CAACTTCGTCAGATATGGAGCA 58.215 45.455 0.00 0.00 0.00 4.26
788 818 2.541762 GCAACTTCGTCAGATATGGAGC 59.458 50.000 0.00 0.00 0.00 4.70
789 819 2.791560 CGCAACTTCGTCAGATATGGAG 59.208 50.000 0.00 0.00 0.00 3.86
790 820 2.165641 ACGCAACTTCGTCAGATATGGA 59.834 45.455 0.00 0.00 38.44 3.41
802 833 5.115622 GCTTCATGTTTCTAAACGCAACTTC 59.884 40.000 0.00 0.00 41.74 3.01
821 853 5.700722 ATATATACTCGGTGAACGCTTCA 57.299 39.130 0.00 0.00 43.86 3.02
833 865 5.149273 ACGTGCGTGGTTTATATATACTCG 58.851 41.667 0.00 9.08 0.00 4.18
883 915 0.886490 GATGGTGATGGCATCCGGAC 60.886 60.000 23.92 15.29 0.00 4.79
892 924 5.554070 TGCAGTGATTATAGATGGTGATGG 58.446 41.667 0.00 0.00 0.00 3.51
966 998 1.801913 CACGACCGCAGAGCACTAC 60.802 63.158 0.00 0.00 0.00 2.73
1221 1261 3.371097 GATCCCGAAGAGCACGCCA 62.371 63.158 0.00 0.00 0.00 5.69
1378 1418 4.129737 GAGCACGCGGTAGAGGCA 62.130 66.667 12.47 0.00 0.00 4.75
1788 1895 2.263077 CAGAACCCGATCTTGAAGTCG 58.737 52.381 9.23 9.23 37.58 4.18
1791 1898 1.339055 TGCCAGAACCCGATCTTGAAG 60.339 52.381 0.00 0.00 0.00 3.02
1938 2045 1.678970 GCACCCCACCAGGTTCATC 60.679 63.158 0.00 0.00 38.39 2.92
2133 2240 0.809241 CCGAGAAGAGCAGCATCACC 60.809 60.000 0.00 0.00 0.00 4.02
2385 2492 0.249699 TATACCGGGATGCAACGCAG 60.250 55.000 10.31 2.31 43.65 5.18
2386 2493 0.249699 CTATACCGGGATGCAACGCA 60.250 55.000 10.31 0.00 44.86 5.24
2444 2551 6.096987 GGGAGTAGAAATCACTACAGATGTGA 59.903 42.308 0.00 0.00 46.58 3.58
2445 2552 6.097554 AGGGAGTAGAAATCACTACAGATGTG 59.902 42.308 0.00 0.00 43.38 3.21
2446 2553 6.198639 AGGGAGTAGAAATCACTACAGATGT 58.801 40.000 0.00 0.00 43.38 3.06
2447 2554 6.239176 GGAGGGAGTAGAAATCACTACAGATG 60.239 46.154 0.00 0.00 43.38 2.90
2448 2555 5.836358 GGAGGGAGTAGAAATCACTACAGAT 59.164 44.000 0.00 0.00 43.38 2.90
2449 2556 5.202004 GGAGGGAGTAGAAATCACTACAGA 58.798 45.833 0.00 0.00 43.38 3.41
2450 2557 4.036971 CGGAGGGAGTAGAAATCACTACAG 59.963 50.000 0.00 0.00 43.38 2.74
2451 2558 3.952323 CGGAGGGAGTAGAAATCACTACA 59.048 47.826 0.00 0.00 43.38 2.74
2452 2559 3.952967 ACGGAGGGAGTAGAAATCACTAC 59.047 47.826 0.00 0.00 41.87 2.73
2453 2560 4.205587 GACGGAGGGAGTAGAAATCACTA 58.794 47.826 0.00 0.00 28.03 2.74
2454 2561 3.025262 GACGGAGGGAGTAGAAATCACT 58.975 50.000 0.00 0.00 31.50 3.41
2455 2562 2.101082 GGACGGAGGGAGTAGAAATCAC 59.899 54.545 0.00 0.00 0.00 3.06
2456 2563 2.385803 GGACGGAGGGAGTAGAAATCA 58.614 52.381 0.00 0.00 0.00 2.57
2457 2564 1.337387 CGGACGGAGGGAGTAGAAATC 59.663 57.143 0.00 0.00 0.00 2.17
2458 2565 1.064166 TCGGACGGAGGGAGTAGAAAT 60.064 52.381 0.00 0.00 0.00 2.17
2459 2566 0.329261 TCGGACGGAGGGAGTAGAAA 59.671 55.000 0.00 0.00 0.00 2.52
2460 2567 0.329261 TTCGGACGGAGGGAGTAGAA 59.671 55.000 0.00 0.00 0.00 2.10
2461 2568 0.329261 TTTCGGACGGAGGGAGTAGA 59.671 55.000 0.00 0.00 0.00 2.59
2462 2569 1.180029 TTTTCGGACGGAGGGAGTAG 58.820 55.000 0.00 0.00 0.00 2.57
2463 2570 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2464 2571 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2475 2582 1.065998 TCCCCGGACAAGTATTTTCGG 60.066 52.381 0.73 0.00 37.50 4.30
2477 2584 3.380320 CCATTCCCCGGACAAGTATTTTC 59.620 47.826 0.73 0.00 0.00 2.29
2478 2585 3.010808 TCCATTCCCCGGACAAGTATTTT 59.989 43.478 0.73 0.00 0.00 1.82
2481 2588 1.887797 TCCATTCCCCGGACAAGTAT 58.112 50.000 0.73 0.00 0.00 2.12
2490 2597 6.183360 TGTCGTAAAAATATTTCCATTCCCCG 60.183 38.462 0.10 0.00 0.00 5.73
2491 2598 7.102847 TGTCGTAAAAATATTTCCATTCCCC 57.897 36.000 0.10 0.00 0.00 4.81
2492 2599 8.248253 ACTTGTCGTAAAAATATTTCCATTCCC 58.752 33.333 0.10 0.00 0.00 3.97
2501 2608 9.165035 TCCGGAAATACTTGTCGTAAAAATATT 57.835 29.630 0.00 0.00 0.00 1.28
2502 2609 8.606602 GTCCGGAAATACTTGTCGTAAAAATAT 58.393 33.333 5.23 0.00 0.00 1.28
2508 2646 3.500982 CGTCCGGAAATACTTGTCGTAA 58.499 45.455 5.23 0.00 0.00 3.18
2510 2648 1.403249 CCGTCCGGAAATACTTGTCGT 60.403 52.381 5.23 0.00 37.50 4.34
2515 2653 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2520 2658 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2523 2661 1.152819 TGATACTCCCTCCGTCCGG 60.153 63.158 0.00 0.00 0.00 5.14
2524 2662 1.173444 CCTGATACTCCCTCCGTCCG 61.173 65.000 0.00 0.00 0.00 4.79
2525 2663 1.465200 GCCTGATACTCCCTCCGTCC 61.465 65.000 0.00 0.00 0.00 4.79
2526 2664 0.755698 TGCCTGATACTCCCTCCGTC 60.756 60.000 0.00 0.00 0.00 4.79
2540 2678 1.669999 GCCAGCAGGGTATTTGCCTG 61.670 60.000 0.00 0.00 42.48 4.85
2541 2679 1.380380 GCCAGCAGGGTATTTGCCT 60.380 57.895 0.00 0.00 42.48 4.75
2542 2680 1.380380 AGCCAGCAGGGTATTTGCC 60.380 57.895 0.00 0.00 45.70 4.52
2543 2681 1.811860 CAGCCAGCAGGGTATTTGC 59.188 57.895 0.00 0.00 45.83 3.68
2544 2682 0.682209 AGCAGCCAGCAGGGTATTTG 60.682 55.000 0.00 0.00 45.83 2.32
2545 2683 0.682209 CAGCAGCCAGCAGGGTATTT 60.682 55.000 0.00 0.00 45.83 1.40
2547 2685 2.304056 ACAGCAGCCAGCAGGGTAT 61.304 57.895 0.00 0.00 45.83 2.73
2548 2686 2.930019 ACAGCAGCCAGCAGGGTA 60.930 61.111 0.00 0.00 45.83 3.69
2554 2692 2.437359 CCTACCACAGCAGCCAGC 60.437 66.667 0.00 0.00 46.19 4.85
2556 2694 0.476338 TTTTCCTACCACAGCAGCCA 59.524 50.000 0.00 0.00 0.00 4.75
2557 2695 1.839424 ATTTTCCTACCACAGCAGCC 58.161 50.000 0.00 0.00 0.00 4.85
2559 2697 4.520492 AGTCAAATTTTCCTACCACAGCAG 59.480 41.667 0.00 0.00 0.00 4.24
2560 2698 4.278170 CAGTCAAATTTTCCTACCACAGCA 59.722 41.667 0.00 0.00 0.00 4.41
2561 2699 4.798574 CAGTCAAATTTTCCTACCACAGC 58.201 43.478 0.00 0.00 0.00 4.40
2562 2700 4.278170 TGCAGTCAAATTTTCCTACCACAG 59.722 41.667 0.00 0.00 0.00 3.66
2564 2702 4.846779 TGCAGTCAAATTTTCCTACCAC 57.153 40.909 0.00 0.00 0.00 4.16
2565 2703 7.014711 TGTTTATGCAGTCAAATTTTCCTACCA 59.985 33.333 0.00 0.00 0.00 3.25
2566 2704 7.375053 TGTTTATGCAGTCAAATTTTCCTACC 58.625 34.615 0.00 0.00 0.00 3.18
2567 2705 7.542130 CCTGTTTATGCAGTCAAATTTTCCTAC 59.458 37.037 0.00 0.00 34.84 3.18
2568 2706 7.232534 ACCTGTTTATGCAGTCAAATTTTCCTA 59.767 33.333 0.00 0.00 34.84 2.94
2676 2936 4.437239 GTTAGAGATGGACCATGTGTCTG 58.563 47.826 12.99 0.00 43.89 3.51
2678 2938 3.448686 CGTTAGAGATGGACCATGTGTC 58.551 50.000 12.99 5.86 43.67 3.67
2682 2942 3.819564 TTCCGTTAGAGATGGACCATG 57.180 47.619 12.99 0.00 43.22 3.66
2683 2943 5.839063 TCTTATTCCGTTAGAGATGGACCAT 59.161 40.000 6.71 6.71 43.22 3.55
2684 2944 5.205821 TCTTATTCCGTTAGAGATGGACCA 58.794 41.667 0.00 0.00 43.22 4.02
2685 2945 5.786264 TCTTATTCCGTTAGAGATGGACC 57.214 43.478 0.00 0.00 43.22 4.46
2686 2946 8.794553 TCTATTCTTATTCCGTTAGAGATGGAC 58.205 37.037 0.00 0.00 43.22 4.02
2687 2947 8.935614 TCTATTCTTATTCCGTTAGAGATGGA 57.064 34.615 0.00 0.00 41.81 3.41
2688 2948 9.579768 CATCTATTCTTATTCCGTTAGAGATGG 57.420 37.037 0.00 0.00 35.59 3.51
2689 2949 9.579768 CCATCTATTCTTATTCCGTTAGAGATG 57.420 37.037 0.00 0.00 0.00 2.90
2690 2950 9.315363 ACCATCTATTCTTATTCCGTTAGAGAT 57.685 33.333 0.00 0.00 0.00 2.75
2691 2951 8.577296 CACCATCTATTCTTATTCCGTTAGAGA 58.423 37.037 0.00 0.00 0.00 3.10
2692 2952 7.329717 GCACCATCTATTCTTATTCCGTTAGAG 59.670 40.741 0.00 0.00 0.00 2.43
2693 2953 7.015292 AGCACCATCTATTCTTATTCCGTTAGA 59.985 37.037 0.00 0.00 0.00 2.10
2694 2954 7.116948 CAGCACCATCTATTCTTATTCCGTTAG 59.883 40.741 0.00 0.00 0.00 2.34
2695 2955 6.929049 CAGCACCATCTATTCTTATTCCGTTA 59.071 38.462 0.00 0.00 0.00 3.18
2696 2956 5.760253 CAGCACCATCTATTCTTATTCCGTT 59.240 40.000 0.00 0.00 0.00 4.44
2746 3006 0.742505 CACATACAAGCCCAGGCATG 59.257 55.000 12.03 12.10 44.26 4.06
2750 3010 0.620556 AGGACACATACAAGCCCAGG 59.379 55.000 0.00 0.00 0.00 4.45
2766 3026 5.658634 AGTGAATGCTACTTCAGTATCAGGA 59.341 40.000 3.67 0.00 37.10 3.86
2767 3027 5.911752 AGTGAATGCTACTTCAGTATCAGG 58.088 41.667 3.67 0.00 37.10 3.86
2826 3092 1.683441 GGGTGGGTCAGTAGTTGGG 59.317 63.158 0.00 0.00 0.00 4.12
2845 3111 9.113876 CTGAATTACGTTTTGAACTGAATTACC 57.886 33.333 0.00 0.00 0.00 2.85
2852 3118 9.878599 ATTTCTACTGAATTACGTTTTGAACTG 57.121 29.630 0.00 0.00 31.56 3.16
2885 3151 2.829720 AGATTGGTTGCAGCATGATGTT 59.170 40.909 13.32 0.00 39.69 2.71
2894 3161 0.529378 GGAAGGCAGATTGGTTGCAG 59.471 55.000 0.00 0.00 43.28 4.41
2912 3179 1.032114 GGCCTCAAATGGACGAAGGG 61.032 60.000 0.00 0.00 0.00 3.95
2925 3192 2.203280 CCCGTTGTGTTGGCCTCA 60.203 61.111 3.32 0.00 0.00 3.86
2933 3200 1.600636 CCAGACATGCCCGTTGTGT 60.601 57.895 0.00 0.00 0.00 3.72
2960 3227 9.831737 CTGTAAATCAGGAAAAGTGTATTTGAG 57.168 33.333 0.00 0.00 40.23 3.02
2988 3255 5.668558 ACTGTGGACGAAATAGAAAACAC 57.331 39.130 0.00 0.00 0.00 3.32
2991 3258 6.766944 TGGTTTACTGTGGACGAAATAGAAAA 59.233 34.615 0.00 0.00 0.00 2.29
2998 3265 3.207778 CCTTGGTTTACTGTGGACGAAA 58.792 45.455 0.00 0.00 0.00 3.46
3035 3302 7.765695 TGATTTGCAGAAACTAAAGAATCCT 57.234 32.000 0.00 0.00 0.00 3.24
3056 3323 8.426489 ACATGCTGGAATTTATTTAGCATTGAT 58.574 29.630 17.84 9.52 42.74 2.57
3058 3325 7.170320 GGACATGCTGGAATTTATTTAGCATTG 59.830 37.037 17.84 15.89 42.74 2.82
3065 3332 5.662208 TGGATGGACATGCTGGAATTTATTT 59.338 36.000 5.43 0.00 0.00 1.40
3092 3359 7.309194 GGCCTCCACATGTAATTTGTATTATCC 60.309 40.741 0.00 0.00 0.00 2.59
3095 3362 6.545666 CAGGCCTCCACATGTAATTTGTATTA 59.454 38.462 0.00 0.00 0.00 0.98
3128 3557 6.428159 CCTGAATCATAATTAGGTCGGGAAAG 59.572 42.308 9.05 0.00 0.00 2.62
3136 3566 6.352222 CGCCTATCCCTGAATCATAATTAGGT 60.352 42.308 0.00 0.00 0.00 3.08
3227 3752 7.868415 GGACATTTAGTACTAGTATGCAAGGAG 59.132 40.741 19.29 0.00 0.00 3.69
3228 3753 7.563924 AGGACATTTAGTACTAGTATGCAAGGA 59.436 37.037 19.29 0.00 40.58 3.36
3229 3754 7.727181 AGGACATTTAGTACTAGTATGCAAGG 58.273 38.462 19.29 8.97 40.58 3.61
3230 3755 8.414003 TGAGGACATTTAGTACTAGTATGCAAG 58.586 37.037 19.29 0.00 43.17 4.01
3231 3756 8.301252 TGAGGACATTTAGTACTAGTATGCAA 57.699 34.615 19.29 6.11 43.17 4.08
3247 3772 9.793259 TTACTTGTATTTTCTCTTGAGGACATT 57.207 29.630 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.