Multiple sequence alignment - TraesCS2A01G495900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G495900 chr2A 100.000 3824 0 0 1 3824 727188705 727192528 0.000000e+00 7062.0
1 TraesCS2A01G495900 chr2A 91.939 459 21 10 3 457 576662358 576661912 2.510000e-176 628.0
2 TraesCS2A01G495900 chr2D 91.482 3299 176 62 1 3235 592631606 592634863 0.000000e+00 4438.0
3 TraesCS2A01G495900 chr2D 91.323 461 23 9 1 457 533818962 533818515 7.020000e-172 614.0
4 TraesCS2A01G495900 chr2D 90.977 266 21 3 3332 3596 592635044 592635307 4.700000e-94 355.0
5 TraesCS2A01G495900 chr2D 93.000 100 6 1 3212 3311 592634894 592634992 1.110000e-30 145.0
6 TraesCS2A01G495900 chr2D 97.727 44 1 0 2804 2847 592634477 592634520 4.100000e-10 76.8
7 TraesCS2A01G495900 chr2B 88.131 1407 111 31 1 1371 718600561 718601947 0.000000e+00 1622.0
8 TraesCS2A01G495900 chr2B 94.070 860 44 5 2516 3371 718603065 718603921 0.000000e+00 1299.0
9 TraesCS2A01G495900 chr2B 86.718 911 82 27 1623 2508 718602046 718602942 0.000000e+00 976.0
10 TraesCS2A01G495900 chr2B 86.364 902 75 19 1377 2244 718638599 718639486 0.000000e+00 941.0
11 TraesCS2A01G495900 chr2B 82.831 332 41 10 2851 3167 718650103 718650433 2.250000e-72 283.0
12 TraesCS2A01G495900 chr2B 84.211 266 19 11 3332 3596 718603963 718604206 1.780000e-58 237.0
13 TraesCS2A01G495900 chr2B 97.727 44 1 0 2804 2847 718603398 718603441 4.100000e-10 76.8
14 TraesCS2A01G495900 chr1D 90.000 460 29 8 1 456 263327249 263326803 2.560000e-161 579.0
15 TraesCS2A01G495900 chrUn 89.371 461 31 10 1 457 25806953 25807399 7.170000e-157 564.0
16 TraesCS2A01G495900 chrUn 89.371 461 31 10 1 457 287200845 287201291 7.170000e-157 564.0
17 TraesCS2A01G495900 chrUn 89.348 460 31 10 1 456 213905942 213906387 2.580000e-156 562.0
18 TraesCS2A01G495900 chrUn 89.348 460 31 10 1 456 239203550 239203105 2.580000e-156 562.0
19 TraesCS2A01G495900 chr6B 87.654 405 32 10 1 402 441044111 441044500 4.500000e-124 455.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G495900 chr2A 727188705 727192528 3823 False 7062.00 7062 100.0000 1 3824 1 chr2A.!!$F1 3823
1 TraesCS2A01G495900 chr2D 592631606 592635307 3701 False 1253.70 4438 93.2965 1 3596 4 chr2D.!!$F1 3595
2 TraesCS2A01G495900 chr2B 718638599 718639486 887 False 941.00 941 86.3640 1377 2244 1 chr2B.!!$F1 867
3 TraesCS2A01G495900 chr2B 718600561 718604206 3645 False 842.16 1622 90.1714 1 3596 5 chr2B.!!$F3 3595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
653 666 0.234884 GTGGACGCAAAAAGGACTCG 59.765 55.0 0.00 0.00 0.00 4.18 F
1551 1630 0.041135 CCGACGTAGCAGCTACTAGC 60.041 60.0 26.59 15.73 42.84 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1584 1663 0.093705 CAGTACTTTGCGCTCGAAGC 59.906 55.0 9.73 5.67 37.23 3.86 R
3170 3409 0.030908 GCGATCCCGTGACTCCTAAG 59.969 60.0 0.00 0.00 38.24 2.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.853671 GCCGCAATTCACAAATTCAGTAG 59.146 43.478 0.00 0.00 32.69 2.57
44 45 4.321899 GCAATTCACAAATTCAGTAGGCCA 60.322 41.667 5.01 0.00 32.69 5.36
63 64 1.531149 CACCACCGTAAAACAGCTCTG 59.469 52.381 0.00 0.00 0.00 3.35
114 115 1.202417 GCGGATCTAACAGCAGCTACA 60.202 52.381 0.00 0.00 0.00 2.74
219 220 2.759973 TAGCAGGGCAGAGACGGG 60.760 66.667 0.00 0.00 0.00 5.28
460 464 4.752879 CTCCCCTCGGCGCGAAAA 62.753 66.667 12.10 0.00 34.74 2.29
521 529 4.383861 TGTGCGGCTGCTCCTCTG 62.384 66.667 20.27 0.00 43.34 3.35
567 580 1.068264 CGCTTTGCTTCCCCTCTTTTC 60.068 52.381 0.00 0.00 0.00 2.29
571 584 3.328535 TTGCTTCCCCTCTTTTCCTTT 57.671 42.857 0.00 0.00 0.00 3.11
593 606 4.394712 CTTGCGGAGGCGGAAGGT 62.395 66.667 0.00 0.00 44.10 3.50
608 621 4.678743 GGTGCGGGGGCTCCTTTT 62.679 66.667 0.52 0.00 0.00 2.27
609 622 3.062466 GTGCGGGGGCTCCTTTTC 61.062 66.667 0.52 0.00 0.00 2.29
611 624 2.751837 GCGGGGGCTCCTTTTCAG 60.752 66.667 0.52 0.00 0.00 3.02
612 625 3.077907 CGGGGGCTCCTTTTCAGA 58.922 61.111 0.52 0.00 0.00 3.27
614 627 0.251165 CGGGGGCTCCTTTTCAGAAA 60.251 55.000 0.52 0.00 0.00 2.52
615 628 1.821666 CGGGGGCTCCTTTTCAGAAAA 60.822 52.381 0.52 8.09 0.00 2.29
617 630 2.037251 GGGGGCTCCTTTTCAGAAAAAC 59.963 50.000 0.52 0.54 31.23 2.43
619 632 2.621526 GGGCTCCTTTTCAGAAAAACGA 59.378 45.455 9.63 7.20 31.23 3.85
621 634 4.262036 GGGCTCCTTTTCAGAAAAACGATT 60.262 41.667 9.63 0.00 31.23 3.34
622 635 4.917998 GGCTCCTTTTCAGAAAAACGATTC 59.082 41.667 9.63 4.01 31.23 2.52
623 636 5.507315 GGCTCCTTTTCAGAAAAACGATTCA 60.507 40.000 9.63 0.00 31.23 2.57
624 637 5.977129 GCTCCTTTTCAGAAAAACGATTCAA 59.023 36.000 9.63 0.00 31.23 2.69
625 638 6.642540 GCTCCTTTTCAGAAAAACGATTCAAT 59.357 34.615 9.63 0.00 31.23 2.57
626 639 7.148902 GCTCCTTTTCAGAAAAACGATTCAATC 60.149 37.037 9.63 0.00 31.23 2.67
627 640 7.940850 TCCTTTTCAGAAAAACGATTCAATCT 58.059 30.769 9.63 0.00 31.23 2.40
628 641 9.062524 TCCTTTTCAGAAAAACGATTCAATCTA 57.937 29.630 9.63 0.00 31.23 1.98
632 645 6.707290 TCAGAAAAACGATTCAATCTAGGGA 58.293 36.000 0.00 0.00 0.00 4.20
633 646 6.594159 TCAGAAAAACGATTCAATCTAGGGAC 59.406 38.462 0.00 0.00 0.00 4.46
635 648 4.467198 AAACGATTCAATCTAGGGACGT 57.533 40.909 0.00 0.00 0.00 4.34
638 651 2.361119 CGATTCAATCTAGGGACGTGGA 59.639 50.000 0.00 0.00 0.00 4.02
639 652 3.718815 GATTCAATCTAGGGACGTGGAC 58.281 50.000 0.00 0.00 0.00 4.02
641 654 0.527817 CAATCTAGGGACGTGGACGC 60.528 60.000 0.00 0.00 44.43 5.19
642 655 0.968901 AATCTAGGGACGTGGACGCA 60.969 55.000 0.00 0.00 44.43 5.24
643 656 0.968901 ATCTAGGGACGTGGACGCAA 60.969 55.000 0.00 0.00 44.43 4.85
647 660 1.164041 AGGGACGTGGACGCAAAAAG 61.164 55.000 0.00 0.00 44.43 2.27
651 664 0.463116 ACGTGGACGCAAAAAGGACT 60.463 50.000 0.00 0.00 44.43 3.85
653 666 0.234884 GTGGACGCAAAAAGGACTCG 59.765 55.000 0.00 0.00 0.00 4.18
699 712 1.133025 GGCAAATGGACGGTTCAGATG 59.867 52.381 0.00 0.00 0.00 2.90
735 756 3.326578 CCCATCACCACCGTCCCA 61.327 66.667 0.00 0.00 0.00 4.37
737 758 1.153168 CCATCACCACCGTCCCATC 60.153 63.158 0.00 0.00 0.00 3.51
867 901 6.273825 AGGTACGAATCTGTATTACTTGCAG 58.726 40.000 0.00 0.00 39.24 4.41
891 925 2.105930 CTGCCTACTGCGCCTCTC 59.894 66.667 4.18 0.00 45.60 3.20
915 949 2.037847 GTTCCCAGCCCTGCCATT 59.962 61.111 0.00 0.00 0.00 3.16
923 957 0.610232 AGCCCTGCCATTTCACTCAC 60.610 55.000 0.00 0.00 0.00 3.51
961 995 1.849977 AACCCTAGTTCCTCTCGGTC 58.150 55.000 0.00 0.00 31.21 4.79
963 997 0.259356 CCCTAGTTCCTCTCGGTCCT 59.741 60.000 0.00 0.00 0.00 3.85
974 1008 0.305313 CTCGGTCCTCGTCTCGATTC 59.695 60.000 0.00 0.00 40.32 2.52
979 1013 1.473278 GTCCTCGTCTCGATTCCTTGT 59.527 52.381 0.00 0.00 34.61 3.16
1164 1198 4.005650 CAGTATGTTGCTCACCACATTCT 58.994 43.478 0.00 0.00 0.00 2.40
1167 1201 1.872952 TGTTGCTCACCACATTCTTCG 59.127 47.619 0.00 0.00 0.00 3.79
1168 1202 1.873591 GTTGCTCACCACATTCTTCGT 59.126 47.619 0.00 0.00 0.00 3.85
1172 1206 2.670229 GCTCACCACATTCTTCGTCGTA 60.670 50.000 0.00 0.00 0.00 3.43
1173 1207 3.571571 CTCACCACATTCTTCGTCGTAA 58.428 45.455 0.00 0.00 0.00 3.18
1177 1211 4.151689 CACCACATTCTTCGTCGTAATGTT 59.848 41.667 15.61 5.52 40.83 2.71
1178 1212 4.753107 ACCACATTCTTCGTCGTAATGTTT 59.247 37.500 15.61 7.64 40.83 2.83
1181 1215 6.009474 CACATTCTTCGTCGTAATGTTTCAG 58.991 40.000 15.61 6.28 40.83 3.02
1185 1219 2.063266 TCGTCGTAATGTTTCAGTGCC 58.937 47.619 0.00 0.00 0.00 5.01
1192 1226 2.346766 ATGTTTCAGTGCCTGTGTCA 57.653 45.000 2.68 2.05 32.61 3.58
1194 1228 2.016318 TGTTTCAGTGCCTGTGTCAAG 58.984 47.619 2.68 0.00 32.61 3.02
1195 1229 2.017049 GTTTCAGTGCCTGTGTCAAGT 58.983 47.619 2.68 0.00 32.61 3.16
1196 1230 1.953559 TTCAGTGCCTGTGTCAAGTC 58.046 50.000 2.68 0.00 32.61 3.01
1197 1231 1.123077 TCAGTGCCTGTGTCAAGTCT 58.877 50.000 2.68 0.00 32.61 3.24
1198 1232 1.202568 TCAGTGCCTGTGTCAAGTCTG 60.203 52.381 2.68 0.00 32.61 3.51
1199 1233 1.123077 AGTGCCTGTGTCAAGTCTGA 58.877 50.000 0.00 0.00 0.00 3.27
1209 1243 1.420430 TCAAGTCTGACTCCGGGTTT 58.580 50.000 11.31 0.00 0.00 3.27
1210 1244 1.766496 TCAAGTCTGACTCCGGGTTTT 59.234 47.619 11.31 0.00 0.00 2.43
1211 1245 1.873591 CAAGTCTGACTCCGGGTTTTG 59.126 52.381 11.31 0.00 0.00 2.44
1212 1246 0.250338 AGTCTGACTCCGGGTTTTGC 60.250 55.000 4.06 0.00 0.00 3.68
1217 1256 0.955919 GACTCCGGGTTTTGCCTCTG 60.956 60.000 0.00 0.00 37.43 3.35
1274 1313 0.887387 GTGTTCGCCAGCTTTACCCA 60.887 55.000 0.00 0.00 0.00 4.51
1310 1349 1.608025 GGTGCGTCTCATTCCTGTCAA 60.608 52.381 0.00 0.00 0.00 3.18
1371 1418 8.731275 TGGTTACTCTGTGATATGTTAAATGG 57.269 34.615 0.00 0.00 0.00 3.16
1372 1419 8.325787 TGGTTACTCTGTGATATGTTAAATGGT 58.674 33.333 0.00 0.00 0.00 3.55
1392 1439 4.990426 TGGTTTAAGGCTACTGTCGTAAAC 59.010 41.667 9.48 9.48 45.29 2.01
1411 1458 9.763468 TCGTAAACTATGACGAACCAAAGTGGT 62.763 40.741 0.00 0.00 43.66 4.16
1457 1512 4.402474 AGCCAATAAATCAGTTAACTGGCC 59.598 41.667 30.35 12.17 46.50 5.36
1462 1517 4.701956 AAATCAGTTAACTGGCCGATTG 57.298 40.909 30.35 8.15 43.91 2.67
1473 1528 1.599240 GCCGATTGATCCCTGCTCC 60.599 63.158 0.00 0.00 0.00 4.70
1480 1535 2.610859 ATCCCTGCTCCGTGGGTT 60.611 61.111 0.00 0.00 43.74 4.11
1512 1570 2.155732 CGATGAACTCATTTATCGGCCG 59.844 50.000 22.12 22.12 45.65 6.13
1518 1576 5.995282 TGAACTCATTTATCGGCCGATTAAT 59.005 36.000 42.74 38.32 35.19 1.40
1526 1605 1.891150 TCGGCCGATTAATCCCTACTC 59.109 52.381 27.28 0.00 0.00 2.59
1537 1616 2.632541 CCTACTCGCTAGCCGACG 59.367 66.667 9.66 6.77 41.89 5.12
1538 1617 2.178890 CCTACTCGCTAGCCGACGT 61.179 63.158 9.66 11.48 41.89 4.34
1551 1630 0.041135 CCGACGTAGCAGCTACTAGC 60.041 60.000 26.59 15.73 42.84 3.42
1841 1930 1.408822 CCAGGTATGAGCCCCAGTTTC 60.409 57.143 0.00 0.00 0.00 2.78
1842 1931 0.919710 AGGTATGAGCCCCAGTTTCC 59.080 55.000 0.00 0.00 0.00 3.13
1850 1939 3.011144 TGAGCCCCAGTTTCCATTTCATA 59.989 43.478 0.00 0.00 0.00 2.15
1856 1945 4.711355 CCCAGTTTCCATTTCATATGGTGT 59.289 41.667 2.13 0.00 40.06 4.16
1892 1981 8.243426 TGCAATTCACTACCATAACTCATTTTC 58.757 33.333 0.00 0.00 0.00 2.29
2097 2190 3.868757 AGACAACTAGCTATGCGTCAA 57.131 42.857 15.12 0.00 0.00 3.18
2367 2477 3.045601 ACCACTAACTGCATGTCAGAC 57.954 47.619 19.64 0.00 45.72 3.51
2508 2621 5.094429 TGTTGTTGATGTCGAATCAAGTG 57.906 39.130 17.60 0.00 38.54 3.16
2513 2741 6.198687 TGTTGATGTCGAATCAAGTGTTTTC 58.801 36.000 17.60 9.06 38.54 2.29
2793 3031 5.770162 GGAATCACTGGTTATTATTGAGGGG 59.230 44.000 0.00 0.00 0.00 4.79
2876 3114 1.002868 CCAGTGTGAAGGCCTCTGG 60.003 63.158 19.92 19.92 39.41 3.86
2957 3196 1.320507 TGCATTCTGCTGTTTGCTCA 58.679 45.000 16.58 1.40 45.31 4.26
3000 3239 9.994432 ACAATTATGAGAAATTTCTAGCTTTCG 57.006 29.630 20.51 10.10 37.73 3.46
3005 3244 7.962964 TGAGAAATTTCTAGCTTTCGAAGAA 57.037 32.000 20.51 0.00 38.93 2.52
3020 3259 7.615582 TTTCGAAGAAGAATTATGCATCTGT 57.384 32.000 0.19 0.00 45.90 3.41
3128 3367 4.022416 TCATTTCCATGTTTTCAACCGGAG 60.022 41.667 9.46 0.00 31.56 4.63
3152 3391 1.525535 CTGTAGCATGCTCCAGGCC 60.526 63.158 27.70 10.47 42.45 5.19
3169 3408 2.662309 CCTCCAAACTGGCAGCATT 58.338 52.632 15.89 7.40 37.47 3.56
3170 3409 0.529378 CCTCCAAACTGGCAGCATTC 59.471 55.000 15.89 0.00 37.47 2.67
3174 3413 3.084039 TCCAAACTGGCAGCATTCTTAG 58.916 45.455 15.89 0.00 37.47 2.18
3180 3419 1.908619 TGGCAGCATTCTTAGGAGTCA 59.091 47.619 0.00 0.00 0.00 3.41
3182 3421 1.929836 GCAGCATTCTTAGGAGTCACG 59.070 52.381 0.00 0.00 0.00 4.35
3188 3427 1.676746 TCTTAGGAGTCACGGGATCG 58.323 55.000 0.00 0.00 43.02 3.69
3242 3534 3.185203 TATGCCATCCCCAGCCCC 61.185 66.667 0.00 0.00 0.00 5.80
3274 3566 2.751837 CTTTTGCCGCTCCCCCTC 60.752 66.667 0.00 0.00 0.00 4.30
3303 3595 2.597510 AAGGGCGTGTGCTTTCCC 60.598 61.111 0.00 0.00 42.25 3.97
3315 3607 0.037046 GCTTTCCCTTTGCCACATGG 60.037 55.000 0.00 0.00 38.53 3.66
3329 3621 3.014538 ATGGCCACACCCATCCGA 61.015 61.111 8.16 0.00 41.75 4.55
3334 3626 2.659063 CCACACCCATCCGAGCTGA 61.659 63.158 0.00 0.00 0.00 4.26
3350 3642 1.307866 TGACCCTCTTCCCCATCCC 60.308 63.158 0.00 0.00 0.00 3.85
3353 3645 0.624795 ACCCTCTTCCCCATCCCTTC 60.625 60.000 0.00 0.00 0.00 3.46
3354 3646 0.327964 CCCTCTTCCCCATCCCTTCT 60.328 60.000 0.00 0.00 0.00 2.85
3358 3733 0.327964 CTTCCCCATCCCTTCTCCCT 60.328 60.000 0.00 0.00 0.00 4.20
3365 3740 0.045469 ATCCCTTCTCCCTCCTTGCT 59.955 55.000 0.00 0.00 0.00 3.91
3433 3808 8.754991 TTTCCAACCAAATTCCGTGTATATAT 57.245 30.769 0.00 0.00 0.00 0.86
3435 3810 7.510407 TCCAACCAAATTCCGTGTATATATCA 58.490 34.615 0.00 0.00 0.00 2.15
3478 3853 6.881065 ACTTCAACTTACATGTACAGATGCAT 59.119 34.615 4.68 0.00 0.00 3.96
3493 3868 9.823098 GTACAGATGCATGATCAATTTAATCTC 57.177 33.333 2.46 0.00 32.86 2.75
3532 3907 9.944376 GAAAAACATATATAGGATGTAGGCTCA 57.056 33.333 0.54 0.00 36.50 4.26
3545 3920 4.968259 TGTAGGCTCAAGCTGTAAGAAAA 58.032 39.130 1.46 0.00 41.70 2.29
3546 3921 5.560724 TGTAGGCTCAAGCTGTAAGAAAAT 58.439 37.500 1.46 0.00 41.70 1.82
3547 3922 6.707290 TGTAGGCTCAAGCTGTAAGAAAATA 58.293 36.000 1.46 0.00 41.70 1.40
3548 3923 6.818644 TGTAGGCTCAAGCTGTAAGAAAATAG 59.181 38.462 1.46 0.00 41.70 1.73
3550 3925 5.877564 AGGCTCAAGCTGTAAGAAAATAGTC 59.122 40.000 1.46 0.00 41.70 2.59
3551 3926 5.643777 GGCTCAAGCTGTAAGAAAATAGTCA 59.356 40.000 1.46 0.00 41.70 3.41
3563 3938 9.654663 GTAAGAAAATAGTCACCACTTCTACAT 57.345 33.333 0.00 0.00 33.62 2.29
3574 3949 6.042093 TCACCACTTCTACATCAAAAGAGTCT 59.958 38.462 0.00 0.00 0.00 3.24
3581 3956 7.397892 TCTACATCAAAAGAGTCTAGACCAG 57.602 40.000 19.38 3.72 0.00 4.00
3584 3959 4.955811 TCAAAAGAGTCTAGACCAGCAA 57.044 40.909 19.38 0.00 0.00 3.91
3612 3987 2.813100 CAACAATGCCCACGAAAGC 58.187 52.632 0.00 0.00 0.00 3.51
3613 3988 0.031857 CAACAATGCCCACGAAAGCA 59.968 50.000 0.00 0.00 44.45 3.91
3614 3989 0.749649 AACAATGCCCACGAAAGCAA 59.250 45.000 0.00 0.00 43.36 3.91
3615 3990 0.968405 ACAATGCCCACGAAAGCAAT 59.032 45.000 0.00 0.00 43.36 3.56
3616 3991 1.067635 ACAATGCCCACGAAAGCAATC 60.068 47.619 0.00 0.00 43.36 2.67
3617 3992 1.067706 CAATGCCCACGAAAGCAATCA 60.068 47.619 0.00 0.00 43.36 2.57
3618 3993 1.477553 ATGCCCACGAAAGCAATCAT 58.522 45.000 0.00 0.00 43.36 2.45
3619 3994 0.810648 TGCCCACGAAAGCAATCATC 59.189 50.000 0.00 0.00 35.69 2.92
3620 3995 0.810648 GCCCACGAAAGCAATCATCA 59.189 50.000 0.00 0.00 0.00 3.07
3621 3996 1.406539 GCCCACGAAAGCAATCATCAT 59.593 47.619 0.00 0.00 0.00 2.45
3622 3997 2.618241 GCCCACGAAAGCAATCATCATA 59.382 45.455 0.00 0.00 0.00 2.15
3623 3998 3.548818 GCCCACGAAAGCAATCATCATAC 60.549 47.826 0.00 0.00 0.00 2.39
3624 3999 3.879295 CCCACGAAAGCAATCATCATACT 59.121 43.478 0.00 0.00 0.00 2.12
3625 4000 5.056480 CCCACGAAAGCAATCATCATACTA 58.944 41.667 0.00 0.00 0.00 1.82
3626 4001 5.050091 CCCACGAAAGCAATCATCATACTAC 60.050 44.000 0.00 0.00 0.00 2.73
3627 4002 5.755375 CCACGAAAGCAATCATCATACTACT 59.245 40.000 0.00 0.00 0.00 2.57
3628 4003 6.923508 CCACGAAAGCAATCATCATACTACTA 59.076 38.462 0.00 0.00 0.00 1.82
3629 4004 7.115520 CCACGAAAGCAATCATCATACTACTAG 59.884 40.741 0.00 0.00 0.00 2.57
3630 4005 7.649705 CACGAAAGCAATCATCATACTACTAGT 59.350 37.037 0.00 0.00 0.00 2.57
3631 4006 8.847196 ACGAAAGCAATCATCATACTACTAGTA 58.153 33.333 1.89 1.89 34.82 1.82
3632 4007 9.678941 CGAAAGCAATCATCATACTACTAGTAA 57.321 33.333 3.76 0.00 33.89 2.24
3636 4011 9.920133 AGCAATCATCATACTACTAGTAACATG 57.080 33.333 13.61 13.61 33.89 3.21
3637 4012 8.651588 GCAATCATCATACTACTAGTAACATGC 58.348 37.037 14.47 5.29 33.89 4.06
3638 4013 9.696917 CAATCATCATACTACTAGTAACATGCA 57.303 33.333 14.47 0.00 33.89 3.96
3641 4016 9.750125 TCATCATACTACTAGTAACATGCAAAG 57.250 33.333 14.47 1.50 33.89 2.77
3642 4017 8.491152 CATCATACTACTAGTAACATGCAAAGC 58.509 37.037 14.47 0.00 33.89 3.51
3643 4018 7.552459 TCATACTACTAGTAACATGCAAAGCA 58.448 34.615 14.47 0.00 37.30 3.91
3644 4019 8.204160 TCATACTACTAGTAACATGCAAAGCAT 58.796 33.333 14.47 0.00 41.12 3.79
3653 4028 1.667151 TGCAAAGCATGGAACCAGC 59.333 52.632 0.00 3.84 31.71 4.85
3654 4029 0.828762 TGCAAAGCATGGAACCAGCT 60.829 50.000 10.38 10.38 41.03 4.24
3655 4030 1.176527 GCAAAGCATGGAACCAGCTA 58.823 50.000 14.48 0.00 37.70 3.32
3656 4031 1.135286 GCAAAGCATGGAACCAGCTAC 60.135 52.381 14.48 7.28 37.70 3.58
3657 4032 2.440409 CAAAGCATGGAACCAGCTACT 58.560 47.619 14.48 6.28 37.70 2.57
3658 4033 2.821969 CAAAGCATGGAACCAGCTACTT 59.178 45.455 14.48 6.48 37.70 2.24
3659 4034 4.009675 CAAAGCATGGAACCAGCTACTTA 58.990 43.478 14.48 0.00 37.70 2.24
3660 4035 4.301072 AAGCATGGAACCAGCTACTTAA 57.699 40.909 14.48 0.00 37.70 1.85
3661 4036 4.510167 AGCATGGAACCAGCTACTTAAT 57.490 40.909 13.19 0.00 36.73 1.40
3662 4037 4.860022 AGCATGGAACCAGCTACTTAATT 58.140 39.130 13.19 0.00 36.73 1.40
3663 4038 4.884164 AGCATGGAACCAGCTACTTAATTC 59.116 41.667 13.19 0.00 36.73 2.17
3664 4039 4.036852 GCATGGAACCAGCTACTTAATTCC 59.963 45.833 0.00 0.00 36.86 3.01
3665 4040 5.440610 CATGGAACCAGCTACTTAATTCCT 58.559 41.667 0.00 0.00 37.18 3.36
3666 4041 5.514500 TGGAACCAGCTACTTAATTCCTT 57.486 39.130 0.00 0.00 37.18 3.36
3667 4042 6.630203 TGGAACCAGCTACTTAATTCCTTA 57.370 37.500 0.00 0.00 37.18 2.69
3668 4043 7.023171 TGGAACCAGCTACTTAATTCCTTAA 57.977 36.000 0.00 0.00 37.18 1.85
3669 4044 7.463431 TGGAACCAGCTACTTAATTCCTTAAA 58.537 34.615 0.00 0.00 37.18 1.52
3670 4045 7.945664 TGGAACCAGCTACTTAATTCCTTAAAA 59.054 33.333 0.00 0.00 37.18 1.52
3671 4046 8.967918 GGAACCAGCTACTTAATTCCTTAAAAT 58.032 33.333 0.00 0.00 34.11 1.82
3674 4049 9.969001 ACCAGCTACTTAATTCCTTAAAATACA 57.031 29.630 0.00 0.00 0.00 2.29
3684 4059 8.810990 AATTCCTTAAAATACATGTAACCCGA 57.189 30.769 10.14 0.00 0.00 5.14
3685 4060 8.810990 ATTCCTTAAAATACATGTAACCCGAA 57.189 30.769 10.14 6.17 0.00 4.30
3686 4061 8.632906 TTCCTTAAAATACATGTAACCCGAAA 57.367 30.769 10.14 0.00 0.00 3.46
3687 4062 8.810990 TCCTTAAAATACATGTAACCCGAAAT 57.189 30.769 10.14 0.00 0.00 2.17
3688 4063 9.245481 TCCTTAAAATACATGTAACCCGAAATT 57.755 29.630 10.14 0.00 0.00 1.82
3693 4068 7.754851 AATACATGTAACCCGAAATTATCCC 57.245 36.000 10.14 0.00 0.00 3.85
3694 4069 5.118729 ACATGTAACCCGAAATTATCCCA 57.881 39.130 0.00 0.00 0.00 4.37
3695 4070 5.511363 ACATGTAACCCGAAATTATCCCAA 58.489 37.500 0.00 0.00 0.00 4.12
3696 4071 5.358725 ACATGTAACCCGAAATTATCCCAAC 59.641 40.000 0.00 0.00 0.00 3.77
3697 4072 4.271661 TGTAACCCGAAATTATCCCAACC 58.728 43.478 0.00 0.00 0.00 3.77
3698 4073 3.459710 AACCCGAAATTATCCCAACCA 57.540 42.857 0.00 0.00 0.00 3.67
3699 4074 3.012934 ACCCGAAATTATCCCAACCAG 57.987 47.619 0.00 0.00 0.00 4.00
3700 4075 2.578940 ACCCGAAATTATCCCAACCAGA 59.421 45.455 0.00 0.00 0.00 3.86
3701 4076 3.214328 CCCGAAATTATCCCAACCAGAG 58.786 50.000 0.00 0.00 0.00 3.35
3702 4077 2.618709 CCGAAATTATCCCAACCAGAGC 59.381 50.000 0.00 0.00 0.00 4.09
3703 4078 2.618709 CGAAATTATCCCAACCAGAGCC 59.381 50.000 0.00 0.00 0.00 4.70
3704 4079 3.631250 GAAATTATCCCAACCAGAGCCA 58.369 45.455 0.00 0.00 0.00 4.75
3705 4080 3.979501 AATTATCCCAACCAGAGCCAT 57.020 42.857 0.00 0.00 0.00 4.40
3706 4081 3.515602 ATTATCCCAACCAGAGCCATC 57.484 47.619 0.00 0.00 0.00 3.51
3707 4082 1.891933 TATCCCAACCAGAGCCATCA 58.108 50.000 0.00 0.00 0.00 3.07
3708 4083 0.257039 ATCCCAACCAGAGCCATCAC 59.743 55.000 0.00 0.00 0.00 3.06
3709 4084 1.379044 CCCAACCAGAGCCATCACC 60.379 63.158 0.00 0.00 0.00 4.02
3710 4085 1.379044 CCAACCAGAGCCATCACCC 60.379 63.158 0.00 0.00 0.00 4.61
3711 4086 1.379916 CAACCAGAGCCATCACCCA 59.620 57.895 0.00 0.00 0.00 4.51
3712 4087 0.679002 CAACCAGAGCCATCACCCAG 60.679 60.000 0.00 0.00 0.00 4.45
3713 4088 0.842030 AACCAGAGCCATCACCCAGA 60.842 55.000 0.00 0.00 0.00 3.86
3714 4089 1.222936 CCAGAGCCATCACCCAGAC 59.777 63.158 0.00 0.00 0.00 3.51
3715 4090 1.270414 CCAGAGCCATCACCCAGACT 61.270 60.000 0.00 0.00 0.00 3.24
3716 4091 0.177604 CAGAGCCATCACCCAGACTC 59.822 60.000 0.00 0.00 0.00 3.36
3717 4092 0.042431 AGAGCCATCACCCAGACTCT 59.958 55.000 0.00 0.00 0.00 3.24
3718 4093 0.177604 GAGCCATCACCCAGACTCTG 59.822 60.000 0.00 0.00 0.00 3.35
3719 4094 1.451028 GCCATCACCCAGACTCTGC 60.451 63.158 0.00 0.00 0.00 4.26
3720 4095 1.908340 GCCATCACCCAGACTCTGCT 61.908 60.000 0.00 0.00 0.00 4.24
3721 4096 0.617413 CCATCACCCAGACTCTGCTT 59.383 55.000 0.00 0.00 0.00 3.91
3722 4097 1.004044 CCATCACCCAGACTCTGCTTT 59.996 52.381 0.00 0.00 0.00 3.51
3723 4098 2.082231 CATCACCCAGACTCTGCTTTG 58.918 52.381 0.00 0.00 0.00 2.77
3724 4099 1.423584 TCACCCAGACTCTGCTTTGA 58.576 50.000 0.00 0.26 0.00 2.69
3725 4100 1.345741 TCACCCAGACTCTGCTTTGAG 59.654 52.381 0.00 0.00 39.78 3.02
3727 4102 2.300152 CACCCAGACTCTGCTTTGAGTA 59.700 50.000 0.00 0.00 46.11 2.59
3728 4103 2.972713 ACCCAGACTCTGCTTTGAGTAA 59.027 45.455 0.00 0.00 46.11 2.24
3729 4104 3.244249 ACCCAGACTCTGCTTTGAGTAAC 60.244 47.826 0.00 0.00 46.11 2.50
3730 4105 3.244215 CCCAGACTCTGCTTTGAGTAACA 60.244 47.826 0.00 0.00 46.11 2.41
3731 4106 4.564406 CCCAGACTCTGCTTTGAGTAACAT 60.564 45.833 0.00 0.00 46.11 2.71
3732 4107 4.629200 CCAGACTCTGCTTTGAGTAACATC 59.371 45.833 0.00 0.00 46.11 3.06
3733 4108 5.233225 CAGACTCTGCTTTGAGTAACATCA 58.767 41.667 7.39 0.00 46.11 3.07
3734 4109 5.348179 CAGACTCTGCTTTGAGTAACATCAG 59.652 44.000 7.39 0.00 46.11 2.90
3735 4110 5.244851 AGACTCTGCTTTGAGTAACATCAGA 59.755 40.000 7.39 0.00 46.11 3.27
3736 4111 5.477510 ACTCTGCTTTGAGTAACATCAGAG 58.522 41.667 12.99 12.99 44.53 3.35
3737 4112 5.244851 ACTCTGCTTTGAGTAACATCAGAGA 59.755 40.000 19.31 0.00 44.53 3.10
3738 4113 5.473931 TCTGCTTTGAGTAACATCAGAGAC 58.526 41.667 0.00 0.00 34.21 3.36
3739 4114 5.244851 TCTGCTTTGAGTAACATCAGAGACT 59.755 40.000 0.00 0.00 34.21 3.24
3740 4115 5.233225 TGCTTTGAGTAACATCAGAGACTG 58.767 41.667 0.00 0.00 34.21 3.51
3741 4116 5.011023 TGCTTTGAGTAACATCAGAGACTGA 59.989 40.000 3.95 3.95 44.99 3.41
3742 4117 5.576384 GCTTTGAGTAACATCAGAGACTGAG 59.424 44.000 7.50 3.13 44.08 3.35
3743 4118 4.710423 TGAGTAACATCAGAGACTGAGC 57.290 45.455 7.50 0.00 44.08 4.26
3744 4119 3.127721 TGAGTAACATCAGAGACTGAGCG 59.872 47.826 7.50 4.11 44.08 5.03
3745 4120 2.159310 AGTAACATCAGAGACTGAGCGC 60.159 50.000 0.00 0.00 44.08 5.92
3746 4121 0.605083 AACATCAGAGACTGAGCGCA 59.395 50.000 11.47 0.00 44.08 6.09
3747 4122 0.822811 ACATCAGAGACTGAGCGCAT 59.177 50.000 11.47 0.00 44.08 4.73
3748 4123 1.206610 ACATCAGAGACTGAGCGCATT 59.793 47.619 11.47 0.00 44.08 3.56
3749 4124 1.593469 CATCAGAGACTGAGCGCATTG 59.407 52.381 11.47 0.28 44.08 2.82
3750 4125 0.738762 TCAGAGACTGAGCGCATTGC 60.739 55.000 11.47 0.00 46.98 3.56
3760 4135 2.712077 GCGCATTGCACAACAGTAC 58.288 52.632 9.69 0.00 45.45 2.73
3761 4136 0.238289 GCGCATTGCACAACAGTACT 59.762 50.000 9.69 0.00 45.45 2.73
3762 4137 1.725931 GCGCATTGCACAACAGTACTC 60.726 52.381 9.69 0.00 45.45 2.59
3763 4138 1.135972 CGCATTGCACAACAGTACTCC 60.136 52.381 9.69 0.00 0.00 3.85
3764 4139 1.879380 GCATTGCACAACAGTACTCCA 59.121 47.619 3.15 0.00 0.00 3.86
3765 4140 2.095567 GCATTGCACAACAGTACTCCAG 60.096 50.000 3.15 0.00 0.00 3.86
3766 4141 1.593196 TTGCACAACAGTACTCCAGC 58.407 50.000 0.00 0.00 0.00 4.85
3767 4142 0.467804 TGCACAACAGTACTCCAGCA 59.532 50.000 0.00 0.00 0.00 4.41
3768 4143 1.134250 TGCACAACAGTACTCCAGCAA 60.134 47.619 0.00 0.00 0.00 3.91
3769 4144 1.946768 GCACAACAGTACTCCAGCAAA 59.053 47.619 0.00 0.00 0.00 3.68
3770 4145 2.357637 GCACAACAGTACTCCAGCAAAA 59.642 45.455 0.00 0.00 0.00 2.44
3771 4146 3.004734 GCACAACAGTACTCCAGCAAAAT 59.995 43.478 0.00 0.00 0.00 1.82
3772 4147 4.215399 GCACAACAGTACTCCAGCAAAATA 59.785 41.667 0.00 0.00 0.00 1.40
3773 4148 5.278266 GCACAACAGTACTCCAGCAAAATAA 60.278 40.000 0.00 0.00 0.00 1.40
3774 4149 6.734137 CACAACAGTACTCCAGCAAAATAAA 58.266 36.000 0.00 0.00 0.00 1.40
3775 4150 6.636850 CACAACAGTACTCCAGCAAAATAAAC 59.363 38.462 0.00 0.00 0.00 2.01
3776 4151 6.546034 ACAACAGTACTCCAGCAAAATAAACT 59.454 34.615 0.00 0.00 0.00 2.66
3777 4152 7.068226 ACAACAGTACTCCAGCAAAATAAACTT 59.932 33.333 0.00 0.00 0.00 2.66
3778 4153 6.970484 ACAGTACTCCAGCAAAATAAACTTG 58.030 36.000 0.00 0.00 0.00 3.16
3779 4154 6.546034 ACAGTACTCCAGCAAAATAAACTTGT 59.454 34.615 0.00 0.00 0.00 3.16
3780 4155 7.717875 ACAGTACTCCAGCAAAATAAACTTGTA 59.282 33.333 0.00 0.00 0.00 2.41
3781 4156 8.230486 CAGTACTCCAGCAAAATAAACTTGTAG 58.770 37.037 0.00 0.00 0.00 2.74
3782 4157 7.937394 AGTACTCCAGCAAAATAAACTTGTAGT 59.063 33.333 0.00 0.00 0.00 2.73
3783 4158 9.211485 GTACTCCAGCAAAATAAACTTGTAGTA 57.789 33.333 0.00 0.00 0.00 1.82
3784 4159 8.324163 ACTCCAGCAAAATAAACTTGTAGTAG 57.676 34.615 0.00 0.00 0.00 2.57
3785 4160 8.154856 ACTCCAGCAAAATAAACTTGTAGTAGA 58.845 33.333 0.00 0.00 0.00 2.59
3786 4161 8.911918 TCCAGCAAAATAAACTTGTAGTAGAA 57.088 30.769 0.00 0.00 0.00 2.10
3787 4162 8.780249 TCCAGCAAAATAAACTTGTAGTAGAAC 58.220 33.333 0.00 0.00 0.00 3.01
3788 4163 8.564574 CCAGCAAAATAAACTTGTAGTAGAACA 58.435 33.333 0.00 0.00 0.00 3.18
3789 4164 9.382244 CAGCAAAATAAACTTGTAGTAGAACAC 57.618 33.333 0.00 0.00 0.00 3.32
3790 4165 8.565416 AGCAAAATAAACTTGTAGTAGAACACC 58.435 33.333 0.00 0.00 0.00 4.16
3791 4166 7.806487 GCAAAATAAACTTGTAGTAGAACACCC 59.194 37.037 0.00 0.00 0.00 4.61
3792 4167 9.063615 CAAAATAAACTTGTAGTAGAACACCCT 57.936 33.333 0.00 0.00 0.00 4.34
3793 4168 8.617290 AAATAAACTTGTAGTAGAACACCCTG 57.383 34.615 0.00 0.00 0.00 4.45
3794 4169 5.881923 AAACTTGTAGTAGAACACCCTGA 57.118 39.130 0.00 0.00 0.00 3.86
3795 4170 4.868314 ACTTGTAGTAGAACACCCTGAC 57.132 45.455 0.00 0.00 0.00 3.51
3796 4171 3.577415 ACTTGTAGTAGAACACCCTGACC 59.423 47.826 0.00 0.00 0.00 4.02
3797 4172 3.247948 TGTAGTAGAACACCCTGACCA 57.752 47.619 0.00 0.00 0.00 4.02
3798 4173 3.786553 TGTAGTAGAACACCCTGACCAT 58.213 45.455 0.00 0.00 0.00 3.55
3799 4174 4.938028 TGTAGTAGAACACCCTGACCATA 58.062 43.478 0.00 0.00 0.00 2.74
3800 4175 4.708421 TGTAGTAGAACACCCTGACCATAC 59.292 45.833 0.00 0.00 0.00 2.39
3801 4176 3.786553 AGTAGAACACCCTGACCATACA 58.213 45.455 0.00 0.00 0.00 2.29
3802 4177 4.362677 AGTAGAACACCCTGACCATACAT 58.637 43.478 0.00 0.00 0.00 2.29
3803 4178 4.783227 AGTAGAACACCCTGACCATACATT 59.217 41.667 0.00 0.00 0.00 2.71
3804 4179 4.222124 AGAACACCCTGACCATACATTC 57.778 45.455 0.00 0.00 0.00 2.67
3805 4180 3.587061 AGAACACCCTGACCATACATTCA 59.413 43.478 0.00 0.00 0.00 2.57
3806 4181 3.634397 ACACCCTGACCATACATTCAG 57.366 47.619 0.00 0.00 39.25 3.02
3807 4182 3.181329 ACACCCTGACCATACATTCAGA 58.819 45.455 0.08 0.00 41.65 3.27
3808 4183 3.587061 ACACCCTGACCATACATTCAGAA 59.413 43.478 0.08 0.00 41.65 3.02
3809 4184 4.194640 CACCCTGACCATACATTCAGAAG 58.805 47.826 0.08 0.00 41.65 2.85
3810 4185 3.209410 CCCTGACCATACATTCAGAAGC 58.791 50.000 0.08 0.00 41.65 3.86
3811 4186 3.209410 CCTGACCATACATTCAGAAGCC 58.791 50.000 0.08 0.00 41.65 4.35
3812 4187 3.370846 CCTGACCATACATTCAGAAGCCA 60.371 47.826 0.08 0.00 41.65 4.75
3813 4188 3.609853 TGACCATACATTCAGAAGCCAC 58.390 45.455 0.00 0.00 0.00 5.01
3814 4189 3.008923 TGACCATACATTCAGAAGCCACA 59.991 43.478 0.00 0.00 0.00 4.17
3815 4190 4.009675 GACCATACATTCAGAAGCCACAA 58.990 43.478 0.00 0.00 0.00 3.33
3816 4191 4.406456 ACCATACATTCAGAAGCCACAAA 58.594 39.130 0.00 0.00 0.00 2.83
3817 4192 4.218417 ACCATACATTCAGAAGCCACAAAC 59.782 41.667 0.00 0.00 0.00 2.93
3818 4193 4.460382 CCATACATTCAGAAGCCACAAACT 59.540 41.667 0.00 0.00 0.00 2.66
3819 4194 5.392380 CCATACATTCAGAAGCCACAAACTC 60.392 44.000 0.00 0.00 0.00 3.01
3820 4195 2.549754 ACATTCAGAAGCCACAAACTCG 59.450 45.455 0.00 0.00 0.00 4.18
3821 4196 2.325583 TTCAGAAGCCACAAACTCGT 57.674 45.000 0.00 0.00 0.00 4.18
3822 4197 2.325583 TCAGAAGCCACAAACTCGTT 57.674 45.000 0.00 0.00 0.00 3.85
3823 4198 1.939934 TCAGAAGCCACAAACTCGTTG 59.060 47.619 0.00 0.00 43.43 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.953772 CTGTTTTACGGTGGTGGCC 59.046 57.895 0.00 0.00 0.00 5.36
44 45 1.878953 CAGAGCTGTTTTACGGTGGT 58.121 50.000 0.00 0.00 0.00 4.16
63 64 1.869767 CCCTTGCGTGATTAGATCTGC 59.130 52.381 5.18 0.00 33.80 4.26
225 226 2.633509 CGAACGACCGAACCCCTCT 61.634 63.158 0.00 0.00 0.00 3.69
226 227 2.126189 CGAACGACCGAACCCCTC 60.126 66.667 0.00 0.00 0.00 4.30
227 228 4.368543 GCGAACGACCGAACCCCT 62.369 66.667 5.50 0.00 0.00 4.79
379 380 1.302832 GCTGGAGAAGGTGGTGGTG 60.303 63.158 0.00 0.00 0.00 4.17
508 516 4.834453 CCAGCAGAGGAGCAGCCG 62.834 72.222 0.00 0.00 43.43 5.52
547 560 0.961753 AAAAGAGGGGAAGCAAAGCG 59.038 50.000 0.00 0.00 0.00 4.68
567 580 0.523519 GCCTCCGCAAGAAAGAAAGG 59.476 55.000 0.00 0.00 43.02 3.11
571 584 2.047274 CCGCCTCCGCAAGAAAGA 60.047 61.111 0.00 0.00 43.02 2.52
593 606 3.567579 CTGAAAAGGAGCCCCCGCA 62.568 63.158 0.00 0.00 40.87 5.69
595 608 0.251165 TTTCTGAAAAGGAGCCCCCG 60.251 55.000 0.00 0.00 40.87 5.73
600 613 5.519722 TGAATCGTTTTTCTGAAAAGGAGC 58.480 37.500 14.52 12.24 46.54 4.70
601 614 8.078596 AGATTGAATCGTTTTTCTGAAAAGGAG 58.921 33.333 14.52 10.53 46.54 3.69
603 616 9.334693 CTAGATTGAATCGTTTTTCTGAAAAGG 57.665 33.333 14.52 11.30 40.30 3.11
604 617 9.334693 CCTAGATTGAATCGTTTTTCTGAAAAG 57.665 33.333 14.52 5.86 35.53 2.27
608 621 6.594159 GTCCCTAGATTGAATCGTTTTTCTGA 59.406 38.462 0.00 0.00 0.00 3.27
609 622 6.455646 CGTCCCTAGATTGAATCGTTTTTCTG 60.456 42.308 0.00 0.00 0.00 3.02
611 624 5.350640 ACGTCCCTAGATTGAATCGTTTTTC 59.649 40.000 0.00 0.00 0.00 2.29
612 625 5.121768 CACGTCCCTAGATTGAATCGTTTTT 59.878 40.000 0.00 0.00 0.00 1.94
614 627 4.181578 CACGTCCCTAGATTGAATCGTTT 58.818 43.478 0.00 0.00 0.00 3.60
615 628 3.430374 CCACGTCCCTAGATTGAATCGTT 60.430 47.826 0.00 0.00 0.00 3.85
617 630 2.361119 TCCACGTCCCTAGATTGAATCG 59.639 50.000 0.00 0.00 0.00 3.34
619 632 2.100916 CGTCCACGTCCCTAGATTGAAT 59.899 50.000 0.00 0.00 34.11 2.57
621 634 1.100510 CGTCCACGTCCCTAGATTGA 58.899 55.000 0.00 0.00 34.11 2.57
622 635 0.527817 GCGTCCACGTCCCTAGATTG 60.528 60.000 0.36 0.00 42.22 2.67
623 636 0.968901 TGCGTCCACGTCCCTAGATT 60.969 55.000 0.36 0.00 42.22 2.40
624 637 0.968901 TTGCGTCCACGTCCCTAGAT 60.969 55.000 0.36 0.00 42.22 1.98
625 638 1.180456 TTTGCGTCCACGTCCCTAGA 61.180 55.000 0.36 0.00 42.22 2.43
626 639 0.320073 TTTTGCGTCCACGTCCCTAG 60.320 55.000 0.36 0.00 42.22 3.02
627 640 0.106335 TTTTTGCGTCCACGTCCCTA 59.894 50.000 0.36 0.00 42.22 3.53
628 641 1.153127 TTTTTGCGTCCACGTCCCT 60.153 52.632 0.36 0.00 42.22 4.20
632 645 0.463116 AGTCCTTTTTGCGTCCACGT 60.463 50.000 0.36 0.00 42.22 4.49
633 646 0.234884 GAGTCCTTTTTGCGTCCACG 59.765 55.000 0.00 0.00 43.27 4.94
635 648 0.105224 TCGAGTCCTTTTTGCGTCCA 59.895 50.000 0.00 0.00 0.00 4.02
638 651 0.883370 GGGTCGAGTCCTTTTTGCGT 60.883 55.000 0.00 0.00 0.00 5.24
639 652 1.866925 GGGTCGAGTCCTTTTTGCG 59.133 57.895 0.00 0.00 0.00 4.85
641 654 1.866925 GCGGGTCGAGTCCTTTTTG 59.133 57.895 3.60 0.00 0.00 2.44
642 655 1.666872 CGCGGGTCGAGTCCTTTTT 60.667 57.895 0.00 0.00 41.67 1.94
643 656 2.048503 CGCGGGTCGAGTCCTTTT 60.049 61.111 0.00 0.00 41.67 2.27
673 686 1.451207 CCGTCCATTTGCCATCGGA 60.451 57.895 0.00 0.00 40.29 4.55
679 692 1.133025 CATCTGAACCGTCCATTTGCC 59.867 52.381 0.00 0.00 0.00 4.52
682 695 3.081804 GTTCCATCTGAACCGTCCATTT 58.918 45.455 0.00 0.00 46.35 2.32
683 696 2.711542 GTTCCATCTGAACCGTCCATT 58.288 47.619 0.00 0.00 46.35 3.16
684 697 2.403252 GTTCCATCTGAACCGTCCAT 57.597 50.000 0.00 0.00 46.35 3.41
706 719 2.111878 GATGGGCCAGGATCCACG 59.888 66.667 15.82 4.18 35.67 4.94
735 756 1.202582 CGACTGACCTTGGTTCGAGAT 59.797 52.381 6.54 0.00 0.00 2.75
737 758 1.009389 GCGACTGACCTTGGTTCGAG 61.009 60.000 14.28 5.15 0.00 4.04
867 901 1.520342 CGCAGTAGGCAGGAGAAGC 60.520 63.158 0.00 0.00 45.17 3.86
915 949 4.600692 TGAATCGGAGAAAGTGAGTGAA 57.399 40.909 0.00 0.00 43.58 3.18
923 957 5.648092 AGGGTTACATTTGAATCGGAGAAAG 59.352 40.000 0.00 0.00 43.58 2.62
961 995 1.914634 CACAAGGAATCGAGACGAGG 58.085 55.000 0.00 0.00 39.91 4.63
963 997 0.456142 CGCACAAGGAATCGAGACGA 60.456 55.000 0.00 0.00 41.13 4.20
974 1008 2.096496 CCTTATTCTTCTGCGCACAAGG 59.904 50.000 22.75 14.21 0.00 3.61
979 1013 0.108377 TCGCCTTATTCTTCTGCGCA 60.108 50.000 10.98 10.98 44.50 6.09
1131 1165 3.513912 AGCAACATACTGTGTAGGTAGCA 59.486 43.478 0.00 0.00 41.14 3.49
1156 1190 4.921470 AACATTACGACGAAGAATGTGG 57.079 40.909 20.11 3.70 41.71 4.17
1164 1198 2.477375 GGCACTGAAACATTACGACGAA 59.523 45.455 0.00 0.00 0.00 3.85
1181 1215 3.686622 TCAGACTTGACACAGGCAC 57.313 52.632 0.00 0.00 0.00 5.01
1192 1226 1.814248 GCAAAACCCGGAGTCAGACTT 60.814 52.381 0.73 0.00 0.00 3.01
1194 1228 1.235281 GGCAAAACCCGGAGTCAGAC 61.235 60.000 0.73 0.00 0.00 3.51
1195 1229 1.072505 GGCAAAACCCGGAGTCAGA 59.927 57.895 0.73 0.00 0.00 3.27
1196 1230 0.955919 GAGGCAAAACCCGGAGTCAG 60.956 60.000 0.73 0.00 40.58 3.51
1197 1231 1.072505 GAGGCAAAACCCGGAGTCA 59.927 57.895 0.73 0.00 40.58 3.41
1198 1232 0.955919 CAGAGGCAAAACCCGGAGTC 60.956 60.000 0.73 0.00 40.58 3.36
1199 1233 1.073199 CAGAGGCAAAACCCGGAGT 59.927 57.895 0.73 0.00 40.58 3.85
1200 1234 0.323629 TACAGAGGCAAAACCCGGAG 59.676 55.000 0.73 0.00 40.58 4.63
1201 1235 0.323629 CTACAGAGGCAAAACCCGGA 59.676 55.000 0.73 0.00 40.58 5.14
1202 1236 0.323629 TCTACAGAGGCAAAACCCGG 59.676 55.000 0.00 0.00 40.58 5.73
1203 1237 1.439679 GTCTACAGAGGCAAAACCCG 58.560 55.000 0.00 0.00 40.58 5.28
1205 1239 1.001633 TCCGTCTACAGAGGCAAAACC 59.998 52.381 0.00 0.00 39.61 3.27
1206 1240 2.450609 TCCGTCTACAGAGGCAAAAC 57.549 50.000 0.00 0.00 0.00 2.43
1209 1243 1.204704 CACATCCGTCTACAGAGGCAA 59.795 52.381 0.00 0.00 0.00 4.52
1210 1244 0.817654 CACATCCGTCTACAGAGGCA 59.182 55.000 0.00 0.00 0.00 4.75
1211 1245 0.103208 CCACATCCGTCTACAGAGGC 59.897 60.000 0.00 0.00 0.00 4.70
1212 1246 1.135139 CACCACATCCGTCTACAGAGG 59.865 57.143 0.00 0.00 0.00 3.69
1217 1256 1.084370 GCAGCACCACATCCGTCTAC 61.084 60.000 0.00 0.00 0.00 2.59
1274 1313 1.141053 GCACCGATATCTGGACCCTTT 59.859 52.381 17.05 0.00 0.00 3.11
1280 1319 0.952280 GAGACGCACCGATATCTGGA 59.048 55.000 17.05 0.00 0.00 3.86
1331 1378 9.959721 ACAGAGTAACCATTTGAAGTACATTAT 57.040 29.630 0.00 0.00 0.00 1.28
1371 1418 7.756722 TCATAGTTTACGACAGTAGCCTTAAAC 59.243 37.037 0.00 0.00 33.87 2.01
1372 1419 7.756722 GTCATAGTTTACGACAGTAGCCTTAAA 59.243 37.037 0.00 0.00 33.87 1.52
1411 1458 8.303876 GGCTGGTATTTTGAACAATAAGAAGAA 58.696 33.333 0.00 0.00 0.00 2.52
1457 1512 0.877649 CACGGAGCAGGGATCAATCG 60.878 60.000 0.00 0.00 0.00 3.34
1483 1538 3.460857 AATGAGTTCATCGGCTACTCC 57.539 47.619 0.00 0.00 37.97 3.85
1495 1550 5.917541 TTAATCGGCCGATAAATGAGTTC 57.082 39.130 39.08 0.00 33.97 3.01
1512 1570 3.427773 CGGCTAGCGAGTAGGGATTAATC 60.428 52.174 9.00 6.93 0.00 1.75
1518 1576 1.525535 GTCGGCTAGCGAGTAGGGA 60.526 63.158 9.00 0.00 0.00 4.20
1526 1605 2.352457 CTGCTACGTCGGCTAGCG 60.352 66.667 9.00 4.38 39.70 4.26
1551 1630 7.678947 AGTCCAATGTTCAGAAATTCAGTAG 57.321 36.000 0.00 0.00 0.00 2.57
1554 1633 7.211966 AGAAGTCCAATGTTCAGAAATTCAG 57.788 36.000 0.00 0.00 0.00 3.02
1584 1663 0.093705 CAGTACTTTGCGCTCGAAGC 59.906 55.000 9.73 5.67 37.23 3.86
1850 1939 8.752187 AGTGAATTGCAGAAATAAATACACCAT 58.248 29.630 0.00 0.00 0.00 3.55
2097 2190 9.435570 AATACACCTGTATTCTGTAAGAGGTAT 57.564 33.333 5.06 0.00 45.22 2.73
2367 2477 2.422832 ACTAACCCGAGCTTTCTCTACG 59.577 50.000 0.00 0.00 37.19 3.51
2508 2621 9.677567 TGTGCTCTTTACAAATCAATAGAAAAC 57.322 29.630 0.00 0.00 0.00 2.43
2513 2741 7.675270 GCATGTGCTCTTTACAAATCAATAG 57.325 36.000 0.00 0.00 38.21 1.73
2599 2832 6.322456 TGGAAGATCCAAACAAACACATGTAA 59.678 34.615 0.00 0.00 45.00 2.41
2793 3031 0.107508 TCATAACCTGCTGCTGGCTC 60.108 55.000 23.46 0.00 42.39 4.70
2876 3114 1.682087 GCACCAGGAAACCCAGGATAC 60.682 57.143 0.00 0.00 34.69 2.24
2907 3145 6.345298 TCACGCCAATACTTCATCTTAATCA 58.655 36.000 0.00 0.00 0.00 2.57
3000 3239 6.965500 CACACACAGATGCATAATTCTTCTTC 59.035 38.462 0.00 0.00 0.00 2.87
3005 3244 4.095932 CAGCACACACAGATGCATAATTCT 59.904 41.667 0.00 0.00 44.59 2.40
3128 3367 3.165670 GAGCATGCTACAGCTGCGC 62.166 63.158 22.74 17.33 44.21 6.09
3152 3391 1.542492 AGAATGCTGCCAGTTTGGAG 58.458 50.000 0.00 0.00 40.96 3.86
3169 3408 1.676746 CGATCCCGTGACTCCTAAGA 58.323 55.000 0.00 0.00 0.00 2.10
3170 3409 0.030908 GCGATCCCGTGACTCCTAAG 59.969 60.000 0.00 0.00 38.24 2.18
3174 3413 1.144057 ATTGCGATCCCGTGACTCC 59.856 57.895 0.00 0.00 38.24 3.85
3180 3419 1.048601 ACCTATCATTGCGATCCCGT 58.951 50.000 0.00 0.00 38.24 5.28
3182 3421 2.417719 GACACCTATCATTGCGATCCC 58.582 52.381 0.00 0.00 35.39 3.85
3188 3427 2.101582 AGTCCTCGACACCTATCATTGC 59.898 50.000 0.00 0.00 34.60 3.56
3291 3583 1.007387 GGCAAAGGGAAAGCACACG 60.007 57.895 0.00 0.00 0.00 4.49
3315 3607 4.101448 AGCTCGGATGGGTGTGGC 62.101 66.667 0.00 0.00 0.00 5.01
3329 3621 0.985490 GATGGGGAAGAGGGTCAGCT 60.985 60.000 0.00 0.00 0.00 4.24
3334 3626 0.624795 GAAGGGATGGGGAAGAGGGT 60.625 60.000 0.00 0.00 0.00 4.34
3350 3642 2.224621 TGTTGAAGCAAGGAGGGAGAAG 60.225 50.000 0.00 0.00 0.00 2.85
3353 3645 2.503895 ATGTTGAAGCAAGGAGGGAG 57.496 50.000 0.00 0.00 0.00 4.30
3354 3646 2.239654 CCTATGTTGAAGCAAGGAGGGA 59.760 50.000 0.00 0.00 0.00 4.20
3358 3733 3.561313 GGAACCCTATGTTGAAGCAAGGA 60.561 47.826 0.00 0.00 37.29 3.36
3365 3740 3.009033 CCTGTCTGGAACCCTATGTTGAA 59.991 47.826 0.00 0.00 37.29 2.69
3433 3808 9.627123 TTGAAGTTTTTAGAAAGATCTCCTTGA 57.373 29.630 0.00 0.00 37.10 3.02
3435 3810 9.634021 AGTTGAAGTTTTTAGAAAGATCTCCTT 57.366 29.630 0.00 0.00 37.10 3.36
3474 3849 8.789762 CCATGTAGAGATTAAATTGATCATGCA 58.210 33.333 0.00 0.00 0.00 3.96
3511 3886 6.900186 AGCTTGAGCCTACATCCTATATATGT 59.100 38.462 0.00 6.22 43.38 2.29
3512 3887 7.147759 ACAGCTTGAGCCTACATCCTATATATG 60.148 40.741 0.00 0.00 43.38 1.78
3532 3907 6.534634 AGTGGTGACTATTTTCTTACAGCTT 58.465 36.000 0.00 0.00 0.00 3.74
3545 3920 7.907389 TCTTTTGATGTAGAAGTGGTGACTAT 58.093 34.615 0.00 0.00 0.00 2.12
3546 3921 7.015292 ACTCTTTTGATGTAGAAGTGGTGACTA 59.985 37.037 0.00 0.00 0.00 2.59
3547 3922 6.174720 TCTTTTGATGTAGAAGTGGTGACT 57.825 37.500 0.00 0.00 0.00 3.41
3548 3923 5.992217 ACTCTTTTGATGTAGAAGTGGTGAC 59.008 40.000 0.00 0.00 0.00 3.67
3550 3925 6.226787 AGACTCTTTTGATGTAGAAGTGGTG 58.773 40.000 0.00 0.00 0.00 4.17
3551 3926 6.426646 AGACTCTTTTGATGTAGAAGTGGT 57.573 37.500 0.00 0.00 0.00 4.16
3563 3938 4.955811 TTGCTGGTCTAGACTCTTTTGA 57.044 40.909 21.88 1.03 0.00 2.69
3596 3971 0.968405 ATTGCTTTCGTGGGCATTGT 59.032 45.000 0.00 0.00 38.30 2.71
3597 3972 1.067706 TGATTGCTTTCGTGGGCATTG 60.068 47.619 0.00 0.00 38.30 2.82
3598 3973 1.255882 TGATTGCTTTCGTGGGCATT 58.744 45.000 0.00 0.00 38.30 3.56
3599 3974 1.406539 GATGATTGCTTTCGTGGGCAT 59.593 47.619 0.00 0.00 38.30 4.40
3600 3975 0.810648 GATGATTGCTTTCGTGGGCA 59.189 50.000 0.00 0.00 36.62 5.36
3601 3976 0.810648 TGATGATTGCTTTCGTGGGC 59.189 50.000 0.00 0.00 0.00 5.36
3602 3977 3.879295 AGTATGATGATTGCTTTCGTGGG 59.121 43.478 0.00 0.00 0.00 4.61
3603 3978 5.755375 AGTAGTATGATGATTGCTTTCGTGG 59.245 40.000 0.00 0.00 0.00 4.94
3604 3979 6.834959 AGTAGTATGATGATTGCTTTCGTG 57.165 37.500 0.00 0.00 0.00 4.35
3605 3980 7.717568 ACTAGTAGTATGATGATTGCTTTCGT 58.282 34.615 0.00 0.00 0.00 3.85
3606 3981 9.678941 TTACTAGTAGTATGATGATTGCTTTCG 57.321 33.333 10.82 0.00 29.64 3.46
3610 3985 9.920133 CATGTTACTAGTAGTATGATGATTGCT 57.080 33.333 10.82 0.00 29.64 3.91
3611 3986 8.651588 GCATGTTACTAGTAGTATGATGATTGC 58.348 37.037 22.58 15.42 29.64 3.56
3612 3987 9.696917 TGCATGTTACTAGTAGTATGATGATTG 57.303 33.333 22.58 11.59 29.64 2.67
3615 3990 9.750125 CTTTGCATGTTACTAGTAGTATGATGA 57.250 33.333 22.58 11.47 29.64 2.92
3616 3991 8.491152 GCTTTGCATGTTACTAGTAGTATGATG 58.509 37.037 22.58 14.90 29.64 3.07
3617 3992 8.204160 TGCTTTGCATGTTACTAGTAGTATGAT 58.796 33.333 22.58 3.77 31.71 2.45
3618 3993 7.552459 TGCTTTGCATGTTACTAGTAGTATGA 58.448 34.615 22.58 1.58 31.71 2.15
3619 3994 7.770801 TGCTTTGCATGTTACTAGTAGTATG 57.229 36.000 10.82 17.55 31.71 2.39
3635 4010 0.828762 AGCTGGTTCCATGCTTTGCA 60.829 50.000 8.99 0.00 44.86 4.08
3636 4011 1.135286 GTAGCTGGTTCCATGCTTTGC 60.135 52.381 16.32 5.95 38.15 3.68
3637 4012 2.440409 AGTAGCTGGTTCCATGCTTTG 58.560 47.619 16.32 0.00 38.15 2.77
3638 4013 2.887151 AGTAGCTGGTTCCATGCTTT 57.113 45.000 16.32 7.26 38.15 3.51
3639 4014 2.887151 AAGTAGCTGGTTCCATGCTT 57.113 45.000 16.32 5.81 38.15 3.91
3640 4015 4.510167 ATTAAGTAGCTGGTTCCATGCT 57.490 40.909 15.73 15.73 40.43 3.79
3641 4016 4.036852 GGAATTAAGTAGCTGGTTCCATGC 59.963 45.833 0.00 0.00 36.13 4.06
3642 4017 5.440610 AGGAATTAAGTAGCTGGTTCCATG 58.559 41.667 0.00 0.00 38.02 3.66
3643 4018 5.717119 AGGAATTAAGTAGCTGGTTCCAT 57.283 39.130 0.00 0.00 38.02 3.41
3644 4019 5.514500 AAGGAATTAAGTAGCTGGTTCCA 57.486 39.130 0.00 0.00 38.02 3.53
3645 4020 7.933215 TTTAAGGAATTAAGTAGCTGGTTCC 57.067 36.000 0.00 1.15 36.29 3.62
3648 4023 9.969001 TGTATTTTAAGGAATTAAGTAGCTGGT 57.031 29.630 0.00 0.00 0.00 4.00
3658 4033 9.902684 TCGGGTTACATGTATTTTAAGGAATTA 57.097 29.630 6.36 0.00 0.00 1.40
3659 4034 8.810990 TCGGGTTACATGTATTTTAAGGAATT 57.189 30.769 6.36 0.00 0.00 2.17
3660 4035 8.810990 TTCGGGTTACATGTATTTTAAGGAAT 57.189 30.769 6.36 0.00 0.00 3.01
3661 4036 8.632906 TTTCGGGTTACATGTATTTTAAGGAA 57.367 30.769 6.36 2.42 0.00 3.36
3662 4037 8.810990 ATTTCGGGTTACATGTATTTTAAGGA 57.189 30.769 6.36 0.00 0.00 3.36
3667 4042 8.635328 GGGATAATTTCGGGTTACATGTATTTT 58.365 33.333 6.36 0.00 0.00 1.82
3668 4043 7.780745 TGGGATAATTTCGGGTTACATGTATTT 59.219 33.333 6.36 0.00 0.00 1.40
3669 4044 7.291566 TGGGATAATTTCGGGTTACATGTATT 58.708 34.615 6.36 0.00 0.00 1.89
3670 4045 6.843752 TGGGATAATTTCGGGTTACATGTAT 58.156 36.000 6.36 0.00 0.00 2.29
3671 4046 6.249911 TGGGATAATTTCGGGTTACATGTA 57.750 37.500 0.08 0.08 0.00 2.29
3672 4047 5.118729 TGGGATAATTTCGGGTTACATGT 57.881 39.130 2.69 2.69 0.00 3.21
3673 4048 5.221165 GGTTGGGATAATTTCGGGTTACATG 60.221 44.000 0.00 0.00 0.00 3.21
3674 4049 4.891168 GGTTGGGATAATTTCGGGTTACAT 59.109 41.667 0.00 0.00 0.00 2.29
3675 4050 4.263816 TGGTTGGGATAATTTCGGGTTACA 60.264 41.667 0.00 0.00 0.00 2.41
3676 4051 4.271661 TGGTTGGGATAATTTCGGGTTAC 58.728 43.478 0.00 0.00 0.00 2.50
3677 4052 4.227754 TCTGGTTGGGATAATTTCGGGTTA 59.772 41.667 0.00 0.00 0.00 2.85
3678 4053 3.010808 TCTGGTTGGGATAATTTCGGGTT 59.989 43.478 0.00 0.00 0.00 4.11
3679 4054 2.578940 TCTGGTTGGGATAATTTCGGGT 59.421 45.455 0.00 0.00 0.00 5.28
3680 4055 3.214328 CTCTGGTTGGGATAATTTCGGG 58.786 50.000 0.00 0.00 0.00 5.14
3681 4056 2.618709 GCTCTGGTTGGGATAATTTCGG 59.381 50.000 0.00 0.00 0.00 4.30
3682 4057 2.618709 GGCTCTGGTTGGGATAATTTCG 59.381 50.000 0.00 0.00 0.00 3.46
3683 4058 3.631250 TGGCTCTGGTTGGGATAATTTC 58.369 45.455 0.00 0.00 0.00 2.17
3684 4059 3.756082 TGGCTCTGGTTGGGATAATTT 57.244 42.857 0.00 0.00 0.00 1.82
3685 4060 3.205056 TGATGGCTCTGGTTGGGATAATT 59.795 43.478 0.00 0.00 0.00 1.40
3686 4061 2.785269 TGATGGCTCTGGTTGGGATAAT 59.215 45.455 0.00 0.00 0.00 1.28
3687 4062 2.092429 GTGATGGCTCTGGTTGGGATAA 60.092 50.000 0.00 0.00 0.00 1.75
3688 4063 1.490490 GTGATGGCTCTGGTTGGGATA 59.510 52.381 0.00 0.00 0.00 2.59
3689 4064 0.257039 GTGATGGCTCTGGTTGGGAT 59.743 55.000 0.00 0.00 0.00 3.85
3690 4065 1.685224 GTGATGGCTCTGGTTGGGA 59.315 57.895 0.00 0.00 0.00 4.37
3691 4066 1.379044 GGTGATGGCTCTGGTTGGG 60.379 63.158 0.00 0.00 0.00 4.12
3692 4067 1.379044 GGGTGATGGCTCTGGTTGG 60.379 63.158 0.00 0.00 0.00 3.77
3693 4068 0.679002 CTGGGTGATGGCTCTGGTTG 60.679 60.000 0.00 0.00 0.00 3.77
3694 4069 0.842030 TCTGGGTGATGGCTCTGGTT 60.842 55.000 0.00 0.00 0.00 3.67
3695 4070 1.229625 TCTGGGTGATGGCTCTGGT 60.230 57.895 0.00 0.00 0.00 4.00
3696 4071 1.222936 GTCTGGGTGATGGCTCTGG 59.777 63.158 0.00 0.00 0.00 3.86
3697 4072 0.177604 GAGTCTGGGTGATGGCTCTG 59.822 60.000 0.00 0.00 0.00 3.35
3698 4073 0.042431 AGAGTCTGGGTGATGGCTCT 59.958 55.000 0.00 0.00 0.00 4.09
3699 4074 0.177604 CAGAGTCTGGGTGATGGCTC 59.822 60.000 12.67 0.00 0.00 4.70
3700 4075 1.908340 GCAGAGTCTGGGTGATGGCT 61.908 60.000 21.54 0.00 31.21 4.75
3701 4076 1.451028 GCAGAGTCTGGGTGATGGC 60.451 63.158 21.54 0.53 31.21 4.40
3702 4077 0.617413 AAGCAGAGTCTGGGTGATGG 59.383 55.000 21.54 0.00 31.21 3.51
3703 4078 2.082231 CAAAGCAGAGTCTGGGTGATG 58.918 52.381 21.54 7.56 31.21 3.07
3704 4079 1.980765 TCAAAGCAGAGTCTGGGTGAT 59.019 47.619 21.54 0.00 31.21 3.06
3705 4080 1.345741 CTCAAAGCAGAGTCTGGGTGA 59.654 52.381 21.54 2.87 31.21 4.02
3706 4081 1.071385 ACTCAAAGCAGAGTCTGGGTG 59.929 52.381 21.54 0.00 45.35 4.61
3707 4082 1.428869 ACTCAAAGCAGAGTCTGGGT 58.571 50.000 21.54 5.46 45.35 4.51
3708 4083 3.244215 TGTTACTCAAAGCAGAGTCTGGG 60.244 47.826 21.54 0.00 45.35 4.45
3709 4084 3.995199 TGTTACTCAAAGCAGAGTCTGG 58.005 45.455 21.54 6.30 45.35 3.86
3710 4085 5.233225 TGATGTTACTCAAAGCAGAGTCTG 58.767 41.667 16.21 16.21 45.35 3.51
3711 4086 5.244851 TCTGATGTTACTCAAAGCAGAGTCT 59.755 40.000 9.36 0.00 45.35 3.24
3712 4087 5.473931 TCTGATGTTACTCAAAGCAGAGTC 58.526 41.667 9.36 0.00 45.35 3.36
3714 4089 5.576384 GTCTCTGATGTTACTCAAAGCAGAG 59.424 44.000 10.15 10.15 43.70 3.35
3715 4090 5.244851 AGTCTCTGATGTTACTCAAAGCAGA 59.755 40.000 0.00 0.00 34.33 4.26
3716 4091 5.348179 CAGTCTCTGATGTTACTCAAAGCAG 59.652 44.000 0.00 0.00 32.44 4.24
3717 4092 5.011023 TCAGTCTCTGATGTTACTCAAAGCA 59.989 40.000 0.00 0.00 35.39 3.91
3718 4093 5.473931 TCAGTCTCTGATGTTACTCAAAGC 58.526 41.667 0.00 0.00 35.39 3.51
3719 4094 5.576384 GCTCAGTCTCTGATGTTACTCAAAG 59.424 44.000 0.00 0.00 39.92 2.77
3720 4095 5.473931 GCTCAGTCTCTGATGTTACTCAAA 58.526 41.667 0.00 0.00 39.92 2.69
3721 4096 4.379918 CGCTCAGTCTCTGATGTTACTCAA 60.380 45.833 0.00 0.00 39.92 3.02
3722 4097 3.127721 CGCTCAGTCTCTGATGTTACTCA 59.872 47.826 0.00 0.00 39.92 3.41
3723 4098 3.690422 CGCTCAGTCTCTGATGTTACTC 58.310 50.000 0.00 0.00 39.92 2.59
3724 4099 2.159310 GCGCTCAGTCTCTGATGTTACT 60.159 50.000 0.00 0.00 39.92 2.24
3725 4100 2.189342 GCGCTCAGTCTCTGATGTTAC 58.811 52.381 0.00 0.00 39.92 2.50
3726 4101 1.818674 TGCGCTCAGTCTCTGATGTTA 59.181 47.619 9.73 0.00 39.92 2.41
3727 4102 0.605083 TGCGCTCAGTCTCTGATGTT 59.395 50.000 9.73 0.00 39.92 2.71
3728 4103 0.822811 ATGCGCTCAGTCTCTGATGT 59.177 50.000 9.73 0.00 39.92 3.06
3729 4104 1.593469 CAATGCGCTCAGTCTCTGATG 59.407 52.381 9.73 0.00 39.92 3.07
3730 4105 1.937278 CAATGCGCTCAGTCTCTGAT 58.063 50.000 9.73 0.00 39.92 2.90
3731 4106 0.738762 GCAATGCGCTCAGTCTCTGA 60.739 55.000 9.73 0.00 38.25 3.27
3732 4107 1.017701 TGCAATGCGCTCAGTCTCTG 61.018 55.000 9.73 0.00 43.06 3.35
3733 4108 1.018226 GTGCAATGCGCTCAGTCTCT 61.018 55.000 12.00 0.00 43.06 3.10
3734 4109 1.293963 TGTGCAATGCGCTCAGTCTC 61.294 55.000 19.95 0.00 39.14 3.36
3735 4110 0.886043 TTGTGCAATGCGCTCAGTCT 60.886 50.000 19.95 0.00 44.41 3.24
3736 4111 0.727122 GTTGTGCAATGCGCTCAGTC 60.727 55.000 19.95 2.51 44.41 3.51
3737 4112 1.283793 GTTGTGCAATGCGCTCAGT 59.716 52.632 19.95 0.00 44.41 3.41
3738 4113 0.728129 CTGTTGTGCAATGCGCTCAG 60.728 55.000 19.95 20.84 44.41 3.35
3739 4114 1.283487 CTGTTGTGCAATGCGCTCA 59.717 52.632 19.95 16.33 42.18 4.26
3740 4115 0.516877 TACTGTTGTGCAATGCGCTC 59.483 50.000 19.95 12.86 43.06 5.03
3741 4116 0.238289 GTACTGTTGTGCAATGCGCT 59.762 50.000 19.95 1.43 43.06 5.92
3742 4117 0.238289 AGTACTGTTGTGCAATGCGC 59.762 50.000 12.40 12.40 42.89 6.09
3743 4118 1.135972 GGAGTACTGTTGTGCAATGCG 60.136 52.381 0.00 0.00 0.00 4.73
3744 4119 1.879380 TGGAGTACTGTTGTGCAATGC 59.121 47.619 0.00 0.00 0.00 3.56
3745 4120 2.095567 GCTGGAGTACTGTTGTGCAATG 60.096 50.000 0.00 0.00 0.00 2.82
3746 4121 2.154462 GCTGGAGTACTGTTGTGCAAT 58.846 47.619 0.00 0.00 0.00 3.56
3747 4122 1.134250 TGCTGGAGTACTGTTGTGCAA 60.134 47.619 0.00 0.00 0.00 4.08
3748 4123 0.467804 TGCTGGAGTACTGTTGTGCA 59.532 50.000 0.00 0.69 0.00 4.57
3749 4124 1.593196 TTGCTGGAGTACTGTTGTGC 58.407 50.000 0.00 0.00 0.00 4.57
3750 4125 4.836125 ATTTTGCTGGAGTACTGTTGTG 57.164 40.909 0.00 0.00 0.00 3.33
3751 4126 6.546034 AGTTTATTTTGCTGGAGTACTGTTGT 59.454 34.615 0.00 0.00 0.00 3.32
3752 4127 6.970484 AGTTTATTTTGCTGGAGTACTGTTG 58.030 36.000 0.00 0.00 0.00 3.33
3753 4128 7.068226 ACAAGTTTATTTTGCTGGAGTACTGTT 59.932 33.333 0.00 0.00 0.00 3.16
3754 4129 6.546034 ACAAGTTTATTTTGCTGGAGTACTGT 59.454 34.615 0.00 0.00 0.00 3.55
3755 4130 6.970484 ACAAGTTTATTTTGCTGGAGTACTG 58.030 36.000 0.00 0.00 0.00 2.74
3756 4131 7.937394 ACTACAAGTTTATTTTGCTGGAGTACT 59.063 33.333 0.00 0.00 0.00 2.73
3757 4132 8.095937 ACTACAAGTTTATTTTGCTGGAGTAC 57.904 34.615 0.00 0.00 0.00 2.73
3758 4133 9.431887 CTACTACAAGTTTATTTTGCTGGAGTA 57.568 33.333 0.00 0.00 0.00 2.59
3759 4134 8.154856 TCTACTACAAGTTTATTTTGCTGGAGT 58.845 33.333 0.00 0.00 0.00 3.85
3760 4135 8.547967 TCTACTACAAGTTTATTTTGCTGGAG 57.452 34.615 0.00 0.00 0.00 3.86
3761 4136 8.780249 GTTCTACTACAAGTTTATTTTGCTGGA 58.220 33.333 0.00 0.00 0.00 3.86
3762 4137 8.564574 TGTTCTACTACAAGTTTATTTTGCTGG 58.435 33.333 0.00 0.00 0.00 4.85
3763 4138 9.382244 GTGTTCTACTACAAGTTTATTTTGCTG 57.618 33.333 0.00 0.00 0.00 4.41
3764 4139 8.565416 GGTGTTCTACTACAAGTTTATTTTGCT 58.435 33.333 0.00 0.00 0.00 3.91
3765 4140 7.806487 GGGTGTTCTACTACAAGTTTATTTTGC 59.194 37.037 0.00 0.00 0.00 3.68
3766 4141 9.063615 AGGGTGTTCTACTACAAGTTTATTTTG 57.936 33.333 0.00 0.00 0.00 2.44
3767 4142 9.063615 CAGGGTGTTCTACTACAAGTTTATTTT 57.936 33.333 0.00 0.00 0.00 1.82
3768 4143 8.434392 TCAGGGTGTTCTACTACAAGTTTATTT 58.566 33.333 0.00 0.00 0.00 1.40
3769 4144 7.876582 GTCAGGGTGTTCTACTACAAGTTTATT 59.123 37.037 0.00 0.00 0.00 1.40
3770 4145 7.384477 GTCAGGGTGTTCTACTACAAGTTTAT 58.616 38.462 0.00 0.00 0.00 1.40
3771 4146 6.239402 GGTCAGGGTGTTCTACTACAAGTTTA 60.239 42.308 0.00 0.00 0.00 2.01
3772 4147 5.454329 GGTCAGGGTGTTCTACTACAAGTTT 60.454 44.000 0.00 0.00 0.00 2.66
3773 4148 4.040095 GGTCAGGGTGTTCTACTACAAGTT 59.960 45.833 0.00 0.00 0.00 2.66
3774 4149 3.577415 GGTCAGGGTGTTCTACTACAAGT 59.423 47.826 0.00 0.00 0.00 3.16
3775 4150 3.576982 TGGTCAGGGTGTTCTACTACAAG 59.423 47.826 0.00 0.00 0.00 3.16
3776 4151 3.578978 TGGTCAGGGTGTTCTACTACAA 58.421 45.455 0.00 0.00 0.00 2.41
3777 4152 3.247948 TGGTCAGGGTGTTCTACTACA 57.752 47.619 0.00 0.00 0.00 2.74
3778 4153 4.708421 TGTATGGTCAGGGTGTTCTACTAC 59.292 45.833 0.00 0.00 0.00 2.73
3779 4154 4.938028 TGTATGGTCAGGGTGTTCTACTA 58.062 43.478 0.00 0.00 0.00 1.82
3780 4155 3.786553 TGTATGGTCAGGGTGTTCTACT 58.213 45.455 0.00 0.00 0.00 2.57
3781 4156 4.755266 ATGTATGGTCAGGGTGTTCTAC 57.245 45.455 0.00 0.00 0.00 2.59
3782 4157 4.780554 TGAATGTATGGTCAGGGTGTTCTA 59.219 41.667 0.00 0.00 0.00 2.10
3783 4158 3.587061 TGAATGTATGGTCAGGGTGTTCT 59.413 43.478 0.00 0.00 0.00 3.01
3784 4159 3.941483 CTGAATGTATGGTCAGGGTGTTC 59.059 47.826 0.00 0.00 38.08 3.18
3785 4160 3.587061 TCTGAATGTATGGTCAGGGTGTT 59.413 43.478 1.14 0.00 41.38 3.32
3786 4161 3.181329 TCTGAATGTATGGTCAGGGTGT 58.819 45.455 1.14 0.00 41.38 4.16
3787 4162 3.912496 TCTGAATGTATGGTCAGGGTG 57.088 47.619 1.14 0.00 41.38 4.61
3788 4163 3.370953 GCTTCTGAATGTATGGTCAGGGT 60.371 47.826 1.14 0.00 41.38 4.34
3789 4164 3.209410 GCTTCTGAATGTATGGTCAGGG 58.791 50.000 1.14 0.00 41.38 4.45
3790 4165 3.209410 GGCTTCTGAATGTATGGTCAGG 58.791 50.000 1.14 0.00 41.38 3.86
3791 4166 3.624861 GTGGCTTCTGAATGTATGGTCAG 59.375 47.826 0.00 0.00 42.23 3.51
3792 4167 3.008923 TGTGGCTTCTGAATGTATGGTCA 59.991 43.478 0.00 0.00 0.00 4.02
3793 4168 3.609853 TGTGGCTTCTGAATGTATGGTC 58.390 45.455 0.00 0.00 0.00 4.02
3794 4169 3.719268 TGTGGCTTCTGAATGTATGGT 57.281 42.857 0.00 0.00 0.00 3.55
3795 4170 4.460382 AGTTTGTGGCTTCTGAATGTATGG 59.540 41.667 0.00 0.00 0.00 2.74
3796 4171 5.633830 AGTTTGTGGCTTCTGAATGTATG 57.366 39.130 0.00 0.00 0.00 2.39
3797 4172 4.393062 CGAGTTTGTGGCTTCTGAATGTAT 59.607 41.667 0.00 0.00 0.00 2.29
3798 4173 3.745975 CGAGTTTGTGGCTTCTGAATGTA 59.254 43.478 0.00 0.00 0.00 2.29
3799 4174 2.549754 CGAGTTTGTGGCTTCTGAATGT 59.450 45.455 0.00 0.00 0.00 2.71
3800 4175 2.549754 ACGAGTTTGTGGCTTCTGAATG 59.450 45.455 0.00 0.00 0.00 2.67
3801 4176 2.851195 ACGAGTTTGTGGCTTCTGAAT 58.149 42.857 0.00 0.00 0.00 2.57
3802 4177 2.325583 ACGAGTTTGTGGCTTCTGAA 57.674 45.000 0.00 0.00 0.00 3.02
3803 4178 1.939934 CAACGAGTTTGTGGCTTCTGA 59.060 47.619 0.00 0.00 0.00 3.27
3804 4179 2.389713 CAACGAGTTTGTGGCTTCTG 57.610 50.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.