Multiple sequence alignment - TraesCS2A01G495800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G495800 chr2A 100.000 6028 0 0 1 6028 727190140 727184113 0.000000e+00 11132.0
1 TraesCS2A01G495800 chr2A 91.700 747 41 13 980 1721 576661912 576662642 0.000000e+00 1016.0
2 TraesCS2A01G495800 chr2A 96.711 152 5 0 5543 5694 155780172 155780323 2.790000e-63 254.0
3 TraesCS2A01G495800 chr2A 89.032 155 10 5 2964 3117 449271464 449271316 1.030000e-42 185.0
4 TraesCS2A01G495800 chr2A 95.062 81 4 0 2964 3044 155590906 155590986 1.760000e-25 128.0
5 TraesCS2A01G495800 chr2A 91.358 81 6 1 1952 2032 244313139 244313218 6.390000e-20 110.0
6 TraesCS2A01G495800 chr2A 91.525 59 5 0 3747 3805 727186363 727186305 1.390000e-11 82.4
7 TraesCS2A01G495800 chr2A 91.525 59 5 0 3778 3836 727186394 727186336 1.390000e-11 82.4
8 TraesCS2A01G495800 chr2B 93.470 1807 81 22 3565 5361 718598520 718596741 0.000000e+00 2649.0
9 TraesCS2A01G495800 chr2B 89.396 1754 124 33 66 1777 718601947 718600214 0.000000e+00 2152.0
10 TraesCS2A01G495800 chr2B 96.008 952 29 4 2531 3473 718599470 718598519 0.000000e+00 1539.0
11 TraesCS2A01G495800 chr2B 90.812 653 32 17 1774 2399 718600189 718599538 0.000000e+00 848.0
12 TraesCS2A01G495800 chr2B 82.544 338 20 18 5704 6008 718596380 718596049 1.670000e-65 261.0
13 TraesCS2A01G495800 chr2B 89.032 155 14 3 2964 3117 406878888 406878736 7.980000e-44 189.0
14 TraesCS2A01G495800 chr2B 89.109 101 8 3 2950 3047 448905709 448905809 8.200000e-24 122.0
15 TraesCS2A01G495800 chr2B 81.208 149 18 6 3913 4059 590633691 590633551 1.780000e-20 111.0
16 TraesCS2A01G495800 chr2B 81.553 103 8 7 5363 5464 718596675 718596583 2.330000e-09 75.0
17 TraesCS2A01G495800 chr2B 85.455 55 7 1 5484 5538 476564426 476564373 8.440000e-04 56.5
18 TraesCS2A01G495800 chr2B 96.970 33 0 1 5997 6028 718596030 718595998 3.000000e-03 54.7
19 TraesCS2A01G495800 chr2D 93.552 1737 68 17 1771 3473 592631245 592629519 0.000000e+00 2547.0
20 TraesCS2A01G495800 chr2D 89.895 1801 116 41 1 1777 592633028 592631270 0.000000e+00 2257.0
21 TraesCS2A01G495800 chr2D 95.300 1149 39 9 4222 5361 592628910 592627768 0.000000e+00 1808.0
22 TraesCS2A01G495800 chr2D 92.033 728 36 11 980 1700 533818515 533819227 0.000000e+00 1003.0
23 TraesCS2A01G495800 chr2D 92.810 612 38 4 3565 4175 592629520 592628914 0.000000e+00 881.0
24 TraesCS2A01G495800 chr2D 80.645 341 15 14 5707 6008 592627390 592627062 3.660000e-52 217.0
25 TraesCS2A01G495800 chr2D 91.743 109 6 2 3471 3576 260370092 260369984 1.350000e-31 148.0
26 TraesCS2A01G495800 chr2D 91.667 108 6 2 3472 3576 160195455 160195562 4.870000e-31 147.0
27 TraesCS2A01G495800 chr2D 91.525 59 5 0 3747 3805 592629306 592629248 1.390000e-11 82.4
28 TraesCS2A01G495800 chr2D 97.727 44 1 0 1774 1817 533819413 533819456 6.480000e-10 76.8
29 TraesCS2A01G495800 chr2D 85.246 61 5 4 5484 5544 523024843 523024787 6.520000e-05 60.2
30 TraesCS2A01G495800 chrUn 91.677 805 46 11 980 1777 25807399 25806609 0.000000e+00 1096.0
31 TraesCS2A01G495800 chrUn 91.677 805 46 11 980 1777 287201291 287200501 0.000000e+00 1096.0
32 TraesCS2A01G495800 chrUn 91.667 804 46 11 981 1777 213906387 213905598 0.000000e+00 1094.0
33 TraesCS2A01G495800 chrUn 91.667 804 46 11 981 1777 239203105 239203894 0.000000e+00 1094.0
34 TraesCS2A01G495800 chrUn 90.909 110 8 1 3463 3570 71312962 71312853 4.870000e-31 147.0
35 TraesCS2A01G495800 chrUn 92.593 54 2 2 1774 1827 25806584 25806533 6.480000e-10 76.8
36 TraesCS2A01G495800 chrUn 92.593 54 2 2 1774 1827 213905573 213905522 6.480000e-10 76.8
37 TraesCS2A01G495800 chrUn 97.727 44 1 0 1774 1817 239203919 239203962 6.480000e-10 76.8
38 TraesCS2A01G495800 chrUn 92.593 54 2 2 1774 1827 287200476 287200425 6.480000e-10 76.8
39 TraesCS2A01G495800 chr1A 88.944 805 70 12 980 1777 419804685 419803893 0.000000e+00 976.0
40 TraesCS2A01G495800 chr1D 91.059 727 45 9 981 1700 263326803 263327516 0.000000e+00 965.0
41 TraesCS2A01G495800 chr1D 97.727 44 1 0 1774 1817 263327702 263327745 6.480000e-10 76.8
42 TraesCS2A01G495800 chr1D 85.965 57 5 2 5484 5539 246650036 246649982 2.350000e-04 58.4
43 TraesCS2A01G495800 chr6B 88.117 749 64 15 1035 1776 441044500 441043770 0.000000e+00 867.0
44 TraesCS2A01G495800 chr6B 96.104 154 6 0 5541 5694 114057205 114057052 1.000000e-62 252.0
45 TraesCS2A01G495800 chr3B 91.213 569 41 6 1214 1777 47158797 47159361 0.000000e+00 765.0
46 TraesCS2A01G495800 chr3B 97.333 150 4 0 5545 5694 2103302 2103153 7.750000e-64 255.0
47 TraesCS2A01G495800 chr3B 94.444 162 8 1 5534 5694 18858970 18858809 1.300000e-61 248.0
48 TraesCS2A01G495800 chr3B 83.019 159 20 5 2964 3116 150655486 150655643 2.930000e-28 137.0
49 TraesCS2A01G495800 chr3B 95.455 44 2 0 1774 1817 47159386 47159429 3.010000e-08 71.3
50 TraesCS2A01G495800 chr3A 96.732 153 5 0 5542 5694 7202019 7201867 7.750000e-64 255.0
51 TraesCS2A01G495800 chr3A 96.711 152 5 0 5543 5694 710866862 710866711 2.790000e-63 254.0
52 TraesCS2A01G495800 chr3A 95.541 157 6 1 5539 5694 157045211 157045367 3.610000e-62 250.0
53 TraesCS2A01G495800 chr4B 95.570 158 5 2 5538 5694 658178333 658178177 1.000000e-62 252.0
54 TraesCS2A01G495800 chr4B 90.722 97 8 1 1935 2030 564650644 564650740 1.760000e-25 128.0
55 TraesCS2A01G495800 chr4B 84.211 57 9 0 5483 5539 60326716 60326772 8.440000e-04 56.5
56 TraesCS2A01G495800 chr7A 95.302 149 7 0 5546 5694 12118755 12118607 2.810000e-58 237.0
57 TraesCS2A01G495800 chr7A 87.234 94 10 2 1935 2027 686114889 686114981 8.260000e-19 106.0
58 TraesCS2A01G495800 chr7A 86.047 86 8 3 3981 4064 468602336 468602253 8.320000e-14 89.8
59 TraesCS2A01G495800 chr5A 87.333 150 14 3 2961 3109 458198350 458198205 3.740000e-37 167.0
60 TraesCS2A01G495800 chr5A 92.857 98 6 1 1935 2031 410509941 410510038 2.270000e-29 141.0
61 TraesCS2A01G495800 chr5B 92.241 116 4 4 3472 3585 474772887 474772775 6.250000e-35 159.0
62 TraesCS2A01G495800 chr5B 96.386 83 3 0 2964 3046 314957216 314957298 2.930000e-28 137.0
63 TraesCS2A01G495800 chr4D 91.743 109 7 2 3465 3573 509117702 509117808 3.760000e-32 150.0
64 TraesCS2A01G495800 chr4D 89.362 47 4 1 5493 5539 41723889 41723934 2.350000e-04 58.4
65 TraesCS2A01G495800 chr4D 85.185 54 6 1 5484 5535 462801221 462801274 3.000000e-03 54.7
66 TraesCS2A01G495800 chr1B 94.000 100 4 2 3472 3569 359902048 359902147 3.760000e-32 150.0
67 TraesCS2A01G495800 chr1B 85.965 57 5 2 5484 5539 331419515 331419569 2.350000e-04 58.4
68 TraesCS2A01G495800 chr7D 92.381 105 6 1 3472 3574 57100424 57100320 1.350000e-31 148.0
69 TraesCS2A01G495800 chr5D 91.743 109 5 3 3472 3577 521371581 521371688 1.350000e-31 148.0
70 TraesCS2A01G495800 chr5D 90.526 95 6 2 1936 2027 134780505 134780599 8.200000e-24 122.0
71 TraesCS2A01G495800 chr6A 91.589 107 7 1 3471 3575 499211792 499211686 4.870000e-31 147.0
72 TraesCS2A01G495800 chr7B 93.421 76 5 0 1952 2027 474550513 474550588 4.940000e-21 113.0
73 TraesCS2A01G495800 chr7B 86.316 95 9 3 1935 2028 329083560 329083651 3.840000e-17 100.0
74 TraesCS2A01G495800 chr3D 86.316 95 11 2 1936 2028 424659673 424659579 1.070000e-17 102.0
75 TraesCS2A01G495800 chr3D 85.965 57 5 2 5484 5539 29167352 29167298 2.350000e-04 58.4
76 TraesCS2A01G495800 chr6D 87.273 55 7 0 5485 5539 408903077 408903023 5.040000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G495800 chr2A 727184113 727190140 6027 True 3765.600000 11132 94.350000 1 6028 3 chr2A.!!$R2 6027
1 TraesCS2A01G495800 chr2A 576661912 576662642 730 False 1016.000000 1016 91.700000 980 1721 1 chr2A.!!$F4 741
2 TraesCS2A01G495800 chr2B 718595998 718601947 5949 True 1082.671429 2649 90.107571 66 6028 7 chr2B.!!$R4 5962
3 TraesCS2A01G495800 chr2D 592627062 592633028 5966 True 1298.733333 2547 90.621167 1 6008 6 chr2D.!!$R3 6007
4 TraesCS2A01G495800 chr2D 533818515 533819456 941 False 539.900000 1003 94.880000 980 1817 2 chr2D.!!$F2 837
5 TraesCS2A01G495800 chrUn 25806533 25807399 866 True 586.400000 1096 92.135000 980 1827 2 chrUn.!!$R2 847
6 TraesCS2A01G495800 chrUn 287200425 287201291 866 True 586.400000 1096 92.135000 980 1827 2 chrUn.!!$R4 847
7 TraesCS2A01G495800 chrUn 213905522 213906387 865 True 585.400000 1094 92.130000 981 1827 2 chrUn.!!$R3 846
8 TraesCS2A01G495800 chrUn 239203105 239203962 857 False 585.400000 1094 94.697000 981 1817 2 chrUn.!!$F1 836
9 TraesCS2A01G495800 chr1A 419803893 419804685 792 True 976.000000 976 88.944000 980 1777 1 chr1A.!!$R1 797
10 TraesCS2A01G495800 chr1D 263326803 263327745 942 False 520.900000 965 94.393000 981 1817 2 chr1D.!!$F1 836
11 TraesCS2A01G495800 chr6B 441043770 441044500 730 True 867.000000 867 88.117000 1035 1776 1 chr6B.!!$R2 741
12 TraesCS2A01G495800 chr3B 47158797 47159429 632 False 418.150000 765 93.334000 1214 1817 2 chr3B.!!$F2 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 230 0.103208 CCACATCCGTCTACAGAGGC 59.897 60.0 0.0 0.0 0.00 4.70 F
800 824 0.105224 TCGAGTCCTTTTTGCGTCCA 59.895 50.0 0.0 0.0 0.00 4.02 F
2100 2388 0.038251 TTGTGCTACTGTCCAGAGCG 60.038 55.0 0.4 0.0 35.68 5.03 F
3930 4254 0.107459 CTTAGGCCCTTCTCAGTGCC 60.107 60.0 0.0 0.0 44.35 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1910 2163 0.814457 AAGTTTTGTGCACAGGCGAA 59.186 45.000 20.59 8.7 45.35 4.70 R
2513 2804 1.642762 ACAAGAAAGGCATCCTGGGAT 59.357 47.619 0.00 0.0 32.13 3.85 R
3950 4274 1.408683 CCTACTTGGCAGCCATAGCAA 60.409 52.381 17.09 0.0 43.56 3.91 R
5871 6542 1.376037 GGCGGAGGAGGTTGAGTTG 60.376 63.158 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 7.756722 GTCATAGTTTACGACAGTAGCCTTAAA 59.243 37.037 0.00 0.00 33.87 1.52
64 65 7.756722 TCATAGTTTACGACAGTAGCCTTAAAC 59.243 37.037 0.00 0.00 33.87 2.01
155 161 0.952280 GAGACGCACCGATATCTGGA 59.048 55.000 17.05 0.00 0.00 3.86
161 167 1.141053 GCACCGATATCTGGACCCTTT 59.859 52.381 17.05 0.00 0.00 3.11
218 224 1.084370 GCAGCACCACATCCGTCTAC 61.084 60.000 0.00 0.00 0.00 2.59
222 228 1.469940 GCACCACATCCGTCTACAGAG 60.470 57.143 0.00 0.00 0.00 3.35
223 229 1.135139 CACCACATCCGTCTACAGAGG 59.865 57.143 0.00 0.00 0.00 3.69
224 230 0.103208 CCACATCCGTCTACAGAGGC 59.897 60.000 0.00 0.00 0.00 4.70
225 231 0.817654 CACATCCGTCTACAGAGGCA 59.182 55.000 0.00 0.00 0.00 4.75
227 233 1.899814 ACATCCGTCTACAGAGGCAAA 59.100 47.619 0.00 0.00 0.00 3.68
229 235 2.450609 TCCGTCTACAGAGGCAAAAC 57.549 50.000 0.00 0.00 0.00 2.43
230 236 1.001633 TCCGTCTACAGAGGCAAAACC 59.998 52.381 0.00 0.00 39.61 3.27
232 238 1.439679 GTCTACAGAGGCAAAACCCG 58.560 55.000 0.00 0.00 40.58 5.28
233 239 0.323629 TCTACAGAGGCAAAACCCGG 59.676 55.000 0.00 0.00 40.58 5.73
236 242 1.073199 CAGAGGCAAAACCCGGAGT 59.927 57.895 0.73 0.00 40.58 3.85
239 245 0.955919 GAGGCAAAACCCGGAGTCAG 60.956 60.000 0.73 0.00 40.58 3.51
241 247 1.235281 GGCAAAACCCGGAGTCAGAC 61.235 60.000 0.73 0.00 0.00 3.51
243 254 1.814248 GCAAAACCCGGAGTCAGACTT 60.814 52.381 0.73 0.00 0.00 3.01
254 265 3.686622 TCAGACTTGACACAGGCAC 57.313 52.632 0.00 0.00 0.00 5.01
271 282 2.477375 GGCACTGAAACATTACGACGAA 59.523 45.455 0.00 0.00 0.00 3.85
279 290 4.921470 AACATTACGACGAAGAATGTGG 57.079 40.909 20.11 3.70 41.71 4.17
304 315 3.513912 AGCAACATACTGTGTAGGTAGCA 59.486 43.478 0.00 0.00 41.14 3.49
456 467 0.108377 TCGCCTTATTCTTCTGCGCA 60.108 50.000 10.98 10.98 44.50 6.09
461 472 2.096496 CCTTATTCTTCTGCGCACAAGG 59.904 50.000 22.75 14.21 0.00 3.61
472 483 0.456142 CGCACAAGGAATCGAGACGA 60.456 55.000 0.00 0.00 41.13 4.20
474 485 1.914634 CACAAGGAATCGAGACGAGG 58.085 55.000 0.00 0.00 39.91 4.63
512 523 5.648092 AGGGTTACATTTGAATCGGAGAAAG 59.352 40.000 0.00 0.00 43.58 2.62
520 531 4.600692 TGAATCGGAGAAAGTGAGTGAA 57.399 40.909 0.00 0.00 43.58 3.18
568 579 1.520342 CGCAGTAGGCAGGAGAAGC 60.520 63.158 0.00 0.00 45.17 3.86
695 719 0.670854 GAGGCGACTGACCTTGGTTC 60.671 60.000 0.00 0.00 44.43 3.62
696 720 2.027625 GGCGACTGACCTTGGTTCG 61.028 63.158 7.71 7.71 0.00 3.95
697 721 1.006571 GCGACTGACCTTGGTTCGA 60.007 57.895 14.28 0.00 0.00 3.71
698 722 1.009389 GCGACTGACCTTGGTTCGAG 61.009 60.000 14.28 5.15 0.00 4.04
699 723 0.596577 CGACTGACCTTGGTTCGAGA 59.403 55.000 6.54 0.00 0.00 4.04
700 724 1.202582 CGACTGACCTTGGTTCGAGAT 59.797 52.381 6.54 0.00 0.00 2.75
729 753 2.111878 GATGGGCCAGGATCCACG 59.888 66.667 15.82 4.18 35.67 4.94
751 775 2.403252 GTTCCATCTGAACCGTCCAT 57.597 50.000 0.00 0.00 46.35 3.41
752 776 2.711542 GTTCCATCTGAACCGTCCATT 58.288 47.619 0.00 0.00 46.35 3.16
753 777 3.081804 GTTCCATCTGAACCGTCCATTT 58.918 45.455 0.00 0.00 46.35 2.32
756 780 1.133025 CATCTGAACCGTCCATTTGCC 59.867 52.381 0.00 0.00 0.00 4.52
762 786 1.451207 CCGTCCATTTGCCATCGGA 60.451 57.895 0.00 0.00 40.29 4.55
792 816 2.048503 CGCGGGTCGAGTCCTTTT 60.049 61.111 0.00 0.00 41.67 2.27
793 817 1.666872 CGCGGGTCGAGTCCTTTTT 60.667 57.895 0.00 0.00 41.67 1.94
796 820 1.866925 GGGTCGAGTCCTTTTTGCG 59.133 57.895 0.00 0.00 0.00 4.85
799 823 0.511653 GTCGAGTCCTTTTTGCGTCC 59.488 55.000 0.00 0.00 0.00 4.79
800 824 0.105224 TCGAGTCCTTTTTGCGTCCA 59.895 50.000 0.00 0.00 0.00 4.02
802 826 0.234884 GAGTCCTTTTTGCGTCCACG 59.765 55.000 0.00 0.00 43.27 4.94
803 827 0.463116 AGTCCTTTTTGCGTCCACGT 60.463 50.000 0.36 0.00 42.22 4.49
805 829 1.161563 TCCTTTTTGCGTCCACGTCC 61.162 55.000 0.36 0.00 42.22 4.79
807 831 1.153127 TTTTTGCGTCCACGTCCCT 60.153 52.632 0.36 0.00 42.22 4.20
809 833 0.320073 TTTTGCGTCCACGTCCCTAG 60.320 55.000 0.36 0.00 42.22 3.02
811 835 0.968901 TTGCGTCCACGTCCCTAGAT 60.969 55.000 0.36 0.00 42.22 1.98
812 836 0.968901 TGCGTCCACGTCCCTAGATT 60.969 55.000 0.36 0.00 42.22 2.40
813 837 0.527817 GCGTCCACGTCCCTAGATTG 60.528 60.000 0.36 0.00 42.22 2.67
814 838 1.100510 CGTCCACGTCCCTAGATTGA 58.899 55.000 0.00 0.00 34.11 2.57
815 839 1.475280 CGTCCACGTCCCTAGATTGAA 59.525 52.381 0.00 0.00 34.11 2.69
817 841 3.718815 GTCCACGTCCCTAGATTGAATC 58.281 50.000 0.00 0.00 0.00 2.52
818 842 2.361119 TCCACGTCCCTAGATTGAATCG 59.639 50.000 0.00 0.00 0.00 3.34
820 844 3.430374 CCACGTCCCTAGATTGAATCGTT 60.430 47.826 0.00 0.00 0.00 3.85
821 845 4.181578 CACGTCCCTAGATTGAATCGTTT 58.818 43.478 0.00 0.00 0.00 3.60
824 848 5.350640 ACGTCCCTAGATTGAATCGTTTTTC 59.649 40.000 0.00 0.00 0.00 2.29
826 850 6.455646 CGTCCCTAGATTGAATCGTTTTTCTG 60.456 42.308 0.00 0.00 0.00 3.02
830 854 8.296713 CCCTAGATTGAATCGTTTTTCTGAAAA 58.703 33.333 11.33 11.33 32.53 2.29
831 855 9.334693 CCTAGATTGAATCGTTTTTCTGAAAAG 57.665 33.333 14.52 5.86 35.53 2.27
834 858 8.078596 AGATTGAATCGTTTTTCTGAAAAGGAG 58.921 33.333 14.52 10.53 46.54 3.69
835 859 5.519722 TGAATCGTTTTTCTGAAAAGGAGC 58.480 37.500 14.52 12.24 46.54 4.70
840 864 0.251165 TTTCTGAAAAGGAGCCCCCG 60.251 55.000 0.00 0.00 40.87 5.73
842 866 3.567579 CTGAAAAGGAGCCCCCGCA 62.568 63.158 0.00 0.00 40.87 5.69
864 888 2.047274 CCGCCTCCGCAAGAAAGA 60.047 61.111 0.00 0.00 43.02 2.52
868 892 0.523519 GCCTCCGCAAGAAAGAAAGG 59.476 55.000 0.00 0.00 43.02 3.11
888 912 0.961753 AAAAGAGGGGAAGCAAAGCG 59.038 50.000 0.00 0.00 0.00 4.68
1208 1249 4.368543 GCGAACGACCGAACCCCT 62.369 66.667 5.50 0.00 0.00 4.79
1209 1250 2.126189 CGAACGACCGAACCCCTC 60.126 66.667 0.00 0.00 0.00 4.30
1210 1251 2.633509 CGAACGACCGAACCCCTCT 61.634 63.158 0.00 0.00 0.00 3.69
1372 1416 1.869767 CCCTTGCGTGATTAGATCTGC 59.130 52.381 5.18 0.00 33.80 4.26
1566 1617 8.689972 AGAATTTTTAGATATGCTTGGACTTGG 58.310 33.333 0.00 0.00 0.00 3.61
1567 1618 8.593945 AATTTTTAGATATGCTTGGACTTGGA 57.406 30.769 0.00 0.00 0.00 3.53
1575 1626 2.229792 GCTTGGACTTGGAATGTGTGA 58.770 47.619 0.00 0.00 0.00 3.58
1603 1655 4.763073 TCTGTTGAATACTGATGAGCTGG 58.237 43.478 0.00 0.00 30.69 4.85
1726 1946 2.360165 CTGCTCTGCAACCATTTATCCC 59.640 50.000 0.00 0.00 38.41 3.85
1765 1986 6.017605 AGCTCTTCTCAGTTTGTACACAATTG 60.018 38.462 3.24 3.24 35.55 2.32
1872 2125 5.652994 AGTTTGGTTTCAGTTGCTGTTTA 57.347 34.783 0.00 0.00 32.61 2.01
1882 2135 5.414360 TCAGTTGCTGTTTAATTTTGTGCA 58.586 33.333 0.00 0.00 32.61 4.57
1910 2163 1.274167 CCACATGTGGCTGCAGAAATT 59.726 47.619 31.13 0.00 44.73 1.82
1946 2199 7.669438 CAAAACTTTGTTGTACTCATCTGTG 57.331 36.000 0.00 0.00 33.59 3.66
1965 2218 7.757097 TCTGTGAAGAAATATAAGAGCGTTC 57.243 36.000 0.00 0.00 0.00 3.95
1981 2259 5.416326 AGAGCGTTCAGATCACTACTTTAGT 59.584 40.000 1.01 0.00 37.82 2.24
2057 2345 1.735571 GCAAAGCTCCCAAAATGCATG 59.264 47.619 0.00 0.00 34.10 4.06
2062 2350 1.690352 GCTCCCAAAATGCATGGCTAT 59.310 47.619 0.00 0.00 36.58 2.97
2100 2388 0.038251 TTGTGCTACTGTCCAGAGCG 60.038 55.000 0.40 0.00 35.68 5.03
2136 2424 4.959839 TGATGGCCTTATGTAGAGTGTGTA 59.040 41.667 3.32 0.00 0.00 2.90
2137 2425 5.423931 TGATGGCCTTATGTAGAGTGTGTAA 59.576 40.000 3.32 0.00 0.00 2.41
2196 2484 4.836125 ATTGGCAATCTTAGGCATTACG 57.164 40.909 6.96 0.00 41.43 3.18
2202 2490 4.275936 GCAATCTTAGGCATTACGGTGAAT 59.724 41.667 0.00 0.00 0.00 2.57
2416 2707 5.105269 TGCGTTCACTACCCTTTATGTATCA 60.105 40.000 0.00 0.00 0.00 2.15
2456 2747 2.600470 GGGGACTGGGTTTGGTGC 60.600 66.667 0.00 0.00 0.00 5.01
2462 2753 0.755327 ACTGGGTTTGGTGCTGGAAC 60.755 55.000 0.00 0.00 0.00 3.62
2467 2758 2.092323 GGTTTGGTGCTGGAACTATCC 58.908 52.381 0.00 0.00 46.76 2.59
2468 2759 2.290960 GGTTTGGTGCTGGAACTATCCT 60.291 50.000 0.00 0.00 46.70 3.24
2498 2789 6.013206 TCTGCCACCCTTCTAAACTAATGTTA 60.013 38.462 0.00 0.00 34.96 2.41
2527 2818 1.777272 GGTTAGATCCCAGGATGCCTT 59.223 52.381 3.29 0.00 34.60 4.35
2554 2845 2.863132 TTCCCTTGTTAGGCGCTTAA 57.137 45.000 8.03 8.03 40.50 1.85
2696 2993 1.351350 AGAGGTTAAAGAGGTGGGTGC 59.649 52.381 0.00 0.00 0.00 5.01
2916 3213 7.615582 TGGCACTTTCAAGTTATAGATTCAG 57.384 36.000 0.00 0.00 37.08 3.02
2940 3237 4.883083 AGTTCAGTCACGCTTTCTGATAA 58.117 39.130 0.00 0.00 37.91 1.75
3051 3372 7.466725 CGAATTTTCCAGTTAATCGGCTATTCA 60.467 37.037 0.00 0.00 0.00 2.57
3059 3380 0.389391 ATCGGCTATTCAGTGACCCG 59.611 55.000 12.16 12.16 37.21 5.28
3082 3404 4.938080 CTGAGTAGCATTAACTGACCGAT 58.062 43.478 0.00 0.00 0.00 4.18
3161 3483 5.535030 AGAGGTTTTGGGTTCACTTCATAAC 59.465 40.000 0.00 0.00 0.00 1.89
3429 3751 0.606673 GGAAGCTCCCACTGAACCAC 60.607 60.000 0.00 0.00 0.00 4.16
3453 3775 2.254546 TTCTGTACCACTTGCAGGTG 57.745 50.000 21.29 21.29 40.26 4.00
3471 3793 2.076863 GTGTGGCTCTCGCTATTTGTT 58.923 47.619 0.00 0.00 36.09 2.83
3472 3794 3.259064 GTGTGGCTCTCGCTATTTGTTA 58.741 45.455 0.00 0.00 36.09 2.41
3473 3795 3.062234 GTGTGGCTCTCGCTATTTGTTAC 59.938 47.826 0.00 0.00 36.09 2.50
3474 3796 3.056107 TGTGGCTCTCGCTATTTGTTACT 60.056 43.478 0.00 0.00 36.09 2.24
3475 3797 3.552294 GTGGCTCTCGCTATTTGTTACTC 59.448 47.826 0.00 0.00 36.09 2.59
3476 3798 3.124560 GGCTCTCGCTATTTGTTACTCC 58.875 50.000 0.00 0.00 36.09 3.85
3477 3799 3.124560 GCTCTCGCTATTTGTTACTCCC 58.875 50.000 0.00 0.00 0.00 4.30
3478 3800 3.181474 GCTCTCGCTATTTGTTACTCCCT 60.181 47.826 0.00 0.00 0.00 4.20
3479 3801 4.612943 CTCTCGCTATTTGTTACTCCCTC 58.387 47.826 0.00 0.00 0.00 4.30
3480 3802 3.383825 TCTCGCTATTTGTTACTCCCTCC 59.616 47.826 0.00 0.00 0.00 4.30
3481 3803 3.101437 TCGCTATTTGTTACTCCCTCCA 58.899 45.455 0.00 0.00 0.00 3.86
3482 3804 3.709653 TCGCTATTTGTTACTCCCTCCAT 59.290 43.478 0.00 0.00 0.00 3.41
3483 3805 4.058817 CGCTATTTGTTACTCCCTCCATC 58.941 47.826 0.00 0.00 0.00 3.51
3484 3806 4.390264 GCTATTTGTTACTCCCTCCATCC 58.610 47.826 0.00 0.00 0.00 3.51
3485 3807 3.953542 ATTTGTTACTCCCTCCATCCC 57.046 47.619 0.00 0.00 0.00 3.85
3486 3808 2.352561 TTGTTACTCCCTCCATCCCA 57.647 50.000 0.00 0.00 0.00 4.37
3487 3809 2.352561 TGTTACTCCCTCCATCCCAA 57.647 50.000 0.00 0.00 0.00 4.12
3488 3810 2.638325 TGTTACTCCCTCCATCCCAAA 58.362 47.619 0.00 0.00 0.00 3.28
3489 3811 2.990284 TGTTACTCCCTCCATCCCAAAA 59.010 45.455 0.00 0.00 0.00 2.44
3490 3812 3.596046 TGTTACTCCCTCCATCCCAAAAT 59.404 43.478 0.00 0.00 0.00 1.82
3491 3813 4.791334 TGTTACTCCCTCCATCCCAAAATA 59.209 41.667 0.00 0.00 0.00 1.40
3492 3814 5.254267 TGTTACTCCCTCCATCCCAAAATAA 59.746 40.000 0.00 0.00 0.00 1.40
3493 3815 4.526438 ACTCCCTCCATCCCAAAATAAG 57.474 45.455 0.00 0.00 0.00 1.73
3494 3816 3.858638 ACTCCCTCCATCCCAAAATAAGT 59.141 43.478 0.00 0.00 0.00 2.24
3495 3817 4.210331 CTCCCTCCATCCCAAAATAAGTG 58.790 47.826 0.00 0.00 0.00 3.16
3496 3818 3.596046 TCCCTCCATCCCAAAATAAGTGT 59.404 43.478 0.00 0.00 0.00 3.55
3497 3819 3.954258 CCCTCCATCCCAAAATAAGTGTC 59.046 47.826 0.00 0.00 0.00 3.67
3498 3820 4.325344 CCCTCCATCCCAAAATAAGTGTCT 60.325 45.833 0.00 0.00 0.00 3.41
3499 3821 4.884164 CCTCCATCCCAAAATAAGTGTCTC 59.116 45.833 0.00 0.00 0.00 3.36
3500 3822 5.500234 CTCCATCCCAAAATAAGTGTCTCA 58.500 41.667 0.00 0.00 0.00 3.27
3501 3823 5.886609 TCCATCCCAAAATAAGTGTCTCAA 58.113 37.500 0.00 0.00 0.00 3.02
3502 3824 5.945784 TCCATCCCAAAATAAGTGTCTCAAG 59.054 40.000 0.00 0.00 0.00 3.02
3503 3825 5.393461 CCATCCCAAAATAAGTGTCTCAAGC 60.393 44.000 0.00 0.00 0.00 4.01
3504 3826 3.751175 TCCCAAAATAAGTGTCTCAAGCG 59.249 43.478 0.00 0.00 0.00 4.68
3505 3827 3.502211 CCCAAAATAAGTGTCTCAAGCGT 59.498 43.478 0.00 0.00 0.00 5.07
3506 3828 4.693566 CCCAAAATAAGTGTCTCAAGCGTA 59.306 41.667 0.00 0.00 0.00 4.42
3507 3829 5.163854 CCCAAAATAAGTGTCTCAAGCGTAG 60.164 44.000 0.00 0.00 0.00 3.51
3508 3830 5.408604 CCAAAATAAGTGTCTCAAGCGTAGT 59.591 40.000 0.00 0.00 0.00 2.73
3509 3831 6.588756 CCAAAATAAGTGTCTCAAGCGTAGTA 59.411 38.462 0.00 0.00 0.00 1.82
3510 3832 7.411588 CCAAAATAAGTGTCTCAAGCGTAGTAC 60.412 40.741 0.00 0.00 0.00 2.73
3511 3833 5.892160 ATAAGTGTCTCAAGCGTAGTACA 57.108 39.130 0.38 0.00 0.00 2.90
3512 3834 4.579454 AAGTGTCTCAAGCGTAGTACAA 57.421 40.909 0.38 0.00 0.00 2.41
3513 3835 3.898529 AGTGTCTCAAGCGTAGTACAAC 58.101 45.455 0.38 0.00 0.00 3.32
3514 3836 3.568853 AGTGTCTCAAGCGTAGTACAACT 59.431 43.478 0.38 0.00 0.00 3.16
3515 3837 4.037684 AGTGTCTCAAGCGTAGTACAACTT 59.962 41.667 0.38 0.59 0.00 2.66
3516 3838 4.743644 GTGTCTCAAGCGTAGTACAACTTT 59.256 41.667 0.38 0.00 0.00 2.66
3517 3839 5.916883 GTGTCTCAAGCGTAGTACAACTTTA 59.083 40.000 0.38 0.00 0.00 1.85
3518 3840 5.916883 TGTCTCAAGCGTAGTACAACTTTAC 59.083 40.000 0.38 3.12 0.00 2.01
3519 3841 5.916883 GTCTCAAGCGTAGTACAACTTTACA 59.083 40.000 0.38 0.00 0.00 2.41
3520 3842 5.916883 TCTCAAGCGTAGTACAACTTTACAC 59.083 40.000 0.38 0.00 0.00 2.90
3521 3843 5.835257 TCAAGCGTAGTACAACTTTACACT 58.165 37.500 0.38 0.00 0.00 3.55
3522 3844 6.969366 TCAAGCGTAGTACAACTTTACACTA 58.031 36.000 0.38 0.00 0.00 2.74
3523 3845 7.424803 TCAAGCGTAGTACAACTTTACACTAA 58.575 34.615 0.38 0.00 0.00 2.24
3524 3846 7.920151 TCAAGCGTAGTACAACTTTACACTAAA 59.080 33.333 0.38 0.00 0.00 1.85
3543 3865 9.310716 ACACTAAAGTTAGTACAAAGTTGAGAC 57.689 33.333 3.46 0.00 41.82 3.36
3544 3866 9.309516 CACTAAAGTTAGTACAAAGTTGAGACA 57.690 33.333 3.46 0.00 41.82 3.41
3545 3867 9.310716 ACTAAAGTTAGTACAAAGTTGAGACAC 57.689 33.333 1.81 0.00 41.92 3.67
3546 3868 9.530633 CTAAAGTTAGTACAAAGTTGAGACACT 57.469 33.333 0.00 0.00 0.00 3.55
3547 3869 8.788325 AAAGTTAGTACAAAGTTGAGACACTT 57.212 30.769 0.00 0.98 38.74 3.16
3548 3870 9.880157 AAAGTTAGTACAAAGTTGAGACACTTA 57.120 29.630 0.00 0.00 35.87 2.24
3554 3876 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
3555 3877 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
3556 3878 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
3557 3879 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
3558 3880 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
3559 3881 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
3560 3882 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
3561 3883 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
3562 3884 3.581332 AGACACTTATTTTGGGACGGAGA 59.419 43.478 0.00 0.00 0.00 3.71
3563 3885 3.933332 GACACTTATTTTGGGACGGAGAG 59.067 47.826 0.00 0.00 0.00 3.20
3579 3901 7.392673 GGGACGGAGAGTATATGTTATGTTAGA 59.607 40.741 0.00 0.00 0.00 2.10
3594 3916 3.827722 TGTTAGACACTTCTTTTGGGGG 58.172 45.455 0.00 0.00 32.75 5.40
3671 3994 2.158755 CCTCACCAGGAAGTTCTGTTGT 60.159 50.000 2.25 0.00 43.65 3.32
3744 4067 5.988310 TCTGGGACGAACTAGTTAATTGA 57.012 39.130 8.42 0.00 0.00 2.57
3754 4077 8.958506 ACGAACTAGTTAATTGATGTAGTCTCT 58.041 33.333 8.42 0.00 0.00 3.10
3814 4137 2.941453 TTGTGATGCTCGAGTACTCC 57.059 50.000 17.23 4.06 0.00 3.85
3868 4192 8.850156 CGATGGATGTTTTTCCTTAGGAATTAT 58.150 33.333 15.09 6.97 41.71 1.28
3930 4254 0.107459 CTTAGGCCCTTCTCAGTGCC 60.107 60.000 0.00 0.00 44.35 5.01
3931 4255 1.562672 TTAGGCCCTTCTCAGTGCCC 61.563 60.000 0.00 0.00 45.14 5.36
4010 4335 8.200792 GTGGCAAGATAATTAAGAAGAGAGAGA 58.799 37.037 0.00 0.00 0.00 3.10
4011 4336 8.420222 TGGCAAGATAATTAAGAAGAGAGAGAG 58.580 37.037 0.00 0.00 0.00 3.20
4137 4462 6.299141 TGAAGGAAGCTTATCAACAAGAAGT 58.701 36.000 0.00 0.00 0.00 3.01
4145 4470 6.712547 AGCTTATCAACAAGAAGTTAAGCACT 59.287 34.615 13.16 0.00 45.36 4.40
4175 4500 1.016130 CAGAGGCCTTAGTGCGTGTG 61.016 60.000 6.77 0.00 34.73 3.82
4176 4501 1.741770 GAGGCCTTAGTGCGTGTGG 60.742 63.158 6.77 0.00 0.00 4.17
4183 4508 2.094182 CCTTAGTGCGTGTGGTATCACT 60.094 50.000 7.81 0.00 43.94 3.41
4198 4523 0.037326 TCACTAGCAGTTTCCGCCAG 60.037 55.000 0.00 0.00 0.00 4.85
4204 4529 1.071699 AGCAGTTTCCGCCAGAAGTTA 59.928 47.619 0.00 0.00 35.40 2.24
4233 4558 1.004277 AGGATGCGAAGGGTGCTTTAA 59.996 47.619 0.00 0.00 0.00 1.52
4274 4599 7.829211 CACTTTGGTTGGGGGATATACTATATG 59.171 40.741 0.00 0.00 0.00 1.78
4296 4622 4.346418 TGTGGGTGGTTAAATCATGCTTTT 59.654 37.500 0.00 0.00 0.00 2.27
4338 4664 5.992217 GTCCTCAGAACAGTAATTTGTCTGT 59.008 40.000 0.00 5.28 45.21 3.41
4370 4696 3.200165 AGCTTCACCACTTATTAGGTCCC 59.800 47.826 0.00 0.00 35.52 4.46
4515 4842 8.220755 TGTTACTGAAGCAGTTCTACATTTTT 57.779 30.769 5.31 0.00 42.59 1.94
4605 4937 5.143916 ACGTAAATGAGCTCATTAAAGCG 57.856 39.130 35.78 32.63 45.06 4.68
4745 5078 6.971726 ACAAATGATATGATGCTGGTCATT 57.028 33.333 5.40 0.00 40.22 2.57
4894 5227 8.853077 TTCATGTTGATCTTATGAAGTCAAGT 57.147 30.769 12.62 0.00 36.28 3.16
5338 5674 5.280945 CCAGTTTACAATGTTGTCTTGGTG 58.719 41.667 0.99 0.00 42.35 4.17
5351 5687 3.644265 TGTCTTGGTGCTTTGGTAGAGTA 59.356 43.478 0.00 0.00 0.00 2.59
5357 5693 3.510360 GGTGCTTTGGTAGAGTAGTCAGA 59.490 47.826 0.00 0.00 0.00 3.27
5369 5705 5.054390 GAGTAGTCAGACTCTTTGGACAG 57.946 47.826 6.27 0.00 42.26 3.51
5371 5707 5.329399 AGTAGTCAGACTCTTTGGACAGAT 58.671 41.667 6.27 0.00 32.79 2.90
5377 5777 5.046304 TCAGACTCTTTGGACAGATAAAGGG 60.046 44.000 0.00 0.00 39.65 3.95
5401 5801 4.099380 TCAAACACCAAACGAAAGAACC 57.901 40.909 0.00 0.00 0.00 3.62
5422 5822 9.352191 AGAACCTACTTGTACAGTTATATCGAT 57.648 33.333 2.16 2.16 36.88 3.59
5423 5823 9.395707 GAACCTACTTGTACAGTTATATCGATG 57.604 37.037 8.54 0.00 36.88 3.84
5424 5824 7.368833 ACCTACTTGTACAGTTATATCGATGC 58.631 38.462 8.54 0.00 36.88 3.91
5425 5825 7.230913 ACCTACTTGTACAGTTATATCGATGCT 59.769 37.037 8.54 0.00 36.88 3.79
5464 5865 1.410153 AGCACAGAAAAGGCAACCAAG 59.590 47.619 0.00 0.00 37.17 3.61
5466 5867 2.799562 GCACAGAAAAGGCAACCAAGAC 60.800 50.000 0.00 0.00 37.17 3.01
5470 5871 4.580580 ACAGAAAAGGCAACCAAGACTAAG 59.419 41.667 0.00 0.00 37.17 2.18
5472 5873 5.049129 CAGAAAAGGCAACCAAGACTAAGAG 60.049 44.000 0.00 0.00 37.17 2.85
5473 5874 4.706842 AAAGGCAACCAAGACTAAGAGA 57.293 40.909 0.00 0.00 37.17 3.10
5475 5876 4.278975 AGGCAACCAAGACTAAGAGAAG 57.721 45.455 0.00 0.00 37.17 2.85
5476 5877 3.008485 AGGCAACCAAGACTAAGAGAAGG 59.992 47.826 0.00 0.00 37.17 3.46
5477 5878 3.339141 GCAACCAAGACTAAGAGAAGGG 58.661 50.000 0.00 0.00 0.00 3.95
5478 5879 3.008049 GCAACCAAGACTAAGAGAAGGGA 59.992 47.826 0.00 0.00 0.00 4.20
5481 5882 6.241645 CAACCAAGACTAAGAGAAGGGAAAT 58.758 40.000 0.00 0.00 0.00 2.17
5482 5883 6.056090 ACCAAGACTAAGAGAAGGGAAATC 57.944 41.667 0.00 0.00 0.00 2.17
5498 6007 7.384524 AGGGAAATCATACATCTGATTCAGA 57.615 36.000 18.29 18.29 43.37 3.27
5506 6015 8.498054 TCATACATCTGATTCAGAAAAGTTCC 57.502 34.615 19.73 0.00 44.04 3.62
5514 6029 8.378565 TCTGATTCAGAAAAGTTCCTAGAACAT 58.621 33.333 13.96 0.00 37.57 2.71
5533 6048 8.786826 AGAACATCTTATATTTGTGAACGGAA 57.213 30.769 0.00 0.00 0.00 4.30
5559 6074 6.936968 AGTTCATACTACTCCCTCTGTTTT 57.063 37.500 0.00 0.00 31.21 2.43
5560 6075 7.317722 AGTTCATACTACTCCCTCTGTTTTT 57.682 36.000 0.00 0.00 31.21 1.94
5561 6076 8.431910 AGTTCATACTACTCCCTCTGTTTTTA 57.568 34.615 0.00 0.00 31.21 1.52
5562 6077 8.877195 AGTTCATACTACTCCCTCTGTTTTTAA 58.123 33.333 0.00 0.00 31.21 1.52
5563 6078 9.498176 GTTCATACTACTCCCTCTGTTTTTAAA 57.502 33.333 0.00 0.00 0.00 1.52
5572 6087 9.588096 ACTCCCTCTGTTTTTAAATATTTGTCT 57.412 29.630 11.05 0.00 0.00 3.41
5596 6111 9.778741 TCTTTGTAGACATTTCAAATGACTACT 57.221 29.630 33.32 21.35 42.98 2.57
5599 6114 9.990360 TTGTAGACATTTCAAATGACTACTACA 57.010 29.630 33.32 27.89 42.98 2.74
5603 6118 9.302345 AGACATTTCAAATGACTACTACATACG 57.698 33.333 17.30 0.00 0.00 3.06
5604 6119 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
5605 6120 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
5606 6121 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
5607 6122 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
5609 6124 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
5610 6125 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
5650 6165 7.516198 AGTGTAGATTCACTCATTTTGCTTT 57.484 32.000 0.00 0.00 44.07 3.51
5651 6166 7.365741 AGTGTAGATTCACTCATTTTGCTTTG 58.634 34.615 0.00 0.00 44.07 2.77
5652 6167 7.013655 AGTGTAGATTCACTCATTTTGCTTTGT 59.986 33.333 0.00 0.00 44.07 2.83
5653 6168 8.289618 GTGTAGATTCACTCATTTTGCTTTGTA 58.710 33.333 0.00 0.00 35.68 2.41
5654 6169 9.013229 TGTAGATTCACTCATTTTGCTTTGTAT 57.987 29.630 0.00 0.00 0.00 2.29
5655 6170 9.282247 GTAGATTCACTCATTTTGCTTTGTATG 57.718 33.333 0.00 0.00 0.00 2.39
5656 6171 7.889469 AGATTCACTCATTTTGCTTTGTATGT 58.111 30.769 0.00 0.00 0.00 2.29
5657 6172 9.013229 AGATTCACTCATTTTGCTTTGTATGTA 57.987 29.630 0.00 0.00 0.00 2.29
5658 6173 9.282247 GATTCACTCATTTTGCTTTGTATGTAG 57.718 33.333 0.00 0.00 0.00 2.74
5659 6174 7.744087 TCACTCATTTTGCTTTGTATGTAGT 57.256 32.000 0.00 0.00 0.00 2.73
5660 6175 7.806690 TCACTCATTTTGCTTTGTATGTAGTC 58.193 34.615 0.00 0.00 0.00 2.59
5661 6176 7.443879 TCACTCATTTTGCTTTGTATGTAGTCA 59.556 33.333 0.00 0.00 0.00 3.41
5662 6177 7.535258 CACTCATTTTGCTTTGTATGTAGTCAC 59.465 37.037 0.00 0.00 0.00 3.67
5663 6178 7.445402 ACTCATTTTGCTTTGTATGTAGTCACT 59.555 33.333 0.00 0.00 0.00 3.41
5664 6179 8.165239 TCATTTTGCTTTGTATGTAGTCACTT 57.835 30.769 0.00 0.00 0.00 3.16
5665 6180 8.075574 TCATTTTGCTTTGTATGTAGTCACTTG 58.924 33.333 0.00 0.00 0.00 3.16
5666 6181 6.935741 TTTGCTTTGTATGTAGTCACTTGT 57.064 33.333 0.00 0.00 0.00 3.16
5667 6182 6.935741 TTGCTTTGTATGTAGTCACTTGTT 57.064 33.333 0.00 0.00 0.00 2.83
5668 6183 6.299023 TGCTTTGTATGTAGTCACTTGTTG 57.701 37.500 0.00 0.00 0.00 3.33
5669 6184 6.052360 TGCTTTGTATGTAGTCACTTGTTGA 58.948 36.000 0.00 0.00 0.00 3.18
5670 6185 6.540551 TGCTTTGTATGTAGTCACTTGTTGAA 59.459 34.615 0.00 0.00 35.39 2.69
5671 6186 7.066404 TGCTTTGTATGTAGTCACTTGTTGAAA 59.934 33.333 0.00 0.00 35.39 2.69
5672 6187 8.076178 GCTTTGTATGTAGTCACTTGTTGAAAT 58.924 33.333 0.00 0.00 35.39 2.17
5673 6188 9.385902 CTTTGTATGTAGTCACTTGTTGAAATG 57.614 33.333 0.00 0.00 35.39 2.32
5674 6189 6.898041 TGTATGTAGTCACTTGTTGAAATGC 58.102 36.000 0.00 0.00 35.39 3.56
5675 6190 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
5676 6191 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
5677 6192 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
5678 6193 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
5679 6194 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
5680 6195 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
5681 6196 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
5682 6197 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
5683 6198 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
5684 6199 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
5685 6200 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
5686 6201 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
5687 6202 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
5712 6374 9.507329 AGTATTTAACTTTCTGATTCTGAAGCA 57.493 29.630 8.20 8.20 33.35 3.91
5738 6401 4.591072 GCTATCTCCAGATTAGTTCCAGGT 59.409 45.833 0.00 0.00 36.05 4.00
5759 6427 6.925165 CAGGTTTGAATTTGTTATCTGCTGTT 59.075 34.615 0.00 0.00 0.00 3.16
5789 6457 7.334171 ACCGAATTGGAATTGGAATTTGAATTC 59.666 33.333 7.73 7.73 41.35 2.17
5816 6487 8.596380 GCTGCTGAAATAAGAATATACGGATAC 58.404 37.037 0.00 0.00 0.00 2.24
5829 6500 8.732746 AATATACGGATACAAAAGCTTCAACT 57.267 30.769 0.00 0.00 0.00 3.16
5871 6542 3.543670 GAACGCGCATAGTAGTACTCTC 58.456 50.000 5.73 0.00 0.00 3.20
5872 6543 2.558378 ACGCGCATAGTAGTACTCTCA 58.442 47.619 5.73 0.00 0.00 3.27
5884 6566 4.120946 AGTACTCTCAACTCAACCTCCT 57.879 45.455 0.00 0.00 0.00 3.69
5961 6670 2.420890 GCGATCAGCCCAGAGAGG 59.579 66.667 0.00 0.00 40.81 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 9.763468 TCGTAAACTATGACGAACCAAAGTGGT 62.763 40.741 0.00 0.00 43.66 4.16
43 44 4.990426 TGGTTTAAGGCTACTGTCGTAAAC 59.010 41.667 9.48 9.48 45.29 2.01
63 64 8.325787 TGGTTACTCTGTGATATGTTAAATGGT 58.674 33.333 0.00 0.00 0.00 3.55
64 65 8.731275 TGGTTACTCTGTGATATGTTAAATGG 57.269 34.615 0.00 0.00 0.00 3.16
116 117 3.879295 CTCATTCCTGTCAACACTTGTGT 59.121 43.478 0.00 0.00 0.00 3.72
125 131 1.608025 GGTGCGTCTCATTCCTGTCAA 60.608 52.381 0.00 0.00 0.00 3.18
161 167 0.887387 GTGTTCGCCAGCTTTACCCA 60.887 55.000 0.00 0.00 0.00 4.51
218 224 0.955919 GACTCCGGGTTTTGCCTCTG 60.956 60.000 0.00 0.00 37.43 3.35
222 228 1.072505 TCTGACTCCGGGTTTTGCC 59.927 57.895 0.00 0.00 0.00 4.52
223 229 0.250338 AGTCTGACTCCGGGTTTTGC 60.250 55.000 4.06 0.00 0.00 3.68
224 230 1.873591 CAAGTCTGACTCCGGGTTTTG 59.126 52.381 11.31 0.00 0.00 2.44
225 231 1.766496 TCAAGTCTGACTCCGGGTTTT 59.234 47.619 11.31 0.00 0.00 2.43
227 233 3.143010 TCAAGTCTGACTCCGGGTT 57.857 52.632 11.31 0.00 0.00 4.11
236 242 1.123077 AGTGCCTGTGTCAAGTCTGA 58.877 50.000 0.00 0.00 0.00 3.27
239 245 1.953559 TTCAGTGCCTGTGTCAAGTC 58.046 50.000 2.68 0.00 32.61 3.01
241 247 2.016318 TGTTTCAGTGCCTGTGTCAAG 58.984 47.619 2.68 0.00 32.61 3.02
243 254 2.346766 ATGTTTCAGTGCCTGTGTCA 57.653 45.000 2.68 2.05 32.61 3.58
250 261 2.063266 TCGTCGTAATGTTTCAGTGCC 58.937 47.619 0.00 0.00 0.00 5.01
254 265 6.009474 CACATTCTTCGTCGTAATGTTTCAG 58.991 40.000 15.61 6.28 40.83 3.02
257 268 4.753107 ACCACATTCTTCGTCGTAATGTTT 59.247 37.500 15.61 7.64 40.83 2.83
258 269 4.151689 CACCACATTCTTCGTCGTAATGTT 59.848 41.667 15.61 5.52 40.83 2.71
262 273 3.571571 CTCACCACATTCTTCGTCGTAA 58.428 45.455 0.00 0.00 0.00 3.18
263 274 2.670229 GCTCACCACATTCTTCGTCGTA 60.670 50.000 0.00 0.00 0.00 3.43
267 278 1.873591 GTTGCTCACCACATTCTTCGT 59.126 47.619 0.00 0.00 0.00 3.85
268 279 1.872952 TGTTGCTCACCACATTCTTCG 59.127 47.619 0.00 0.00 0.00 3.79
271 282 4.005650 CAGTATGTTGCTCACCACATTCT 58.994 43.478 0.00 0.00 0.00 2.40
456 467 1.473278 GTCCTCGTCTCGATTCCTTGT 59.527 52.381 0.00 0.00 34.61 3.16
461 472 0.305313 CTCGGTCCTCGTCTCGATTC 59.695 60.000 0.00 0.00 40.32 2.52
472 483 0.259356 CCCTAGTTCCTCTCGGTCCT 59.741 60.000 0.00 0.00 0.00 3.85
474 485 1.849977 AACCCTAGTTCCTCTCGGTC 58.150 55.000 0.00 0.00 31.21 4.79
512 523 0.610232 AGCCCTGCCATTTCACTCAC 60.610 55.000 0.00 0.00 0.00 3.51
520 531 2.037847 GTTCCCAGCCCTGCCATT 59.962 61.111 0.00 0.00 0.00 3.16
544 555 2.105930 CTGCCTACTGCGCCTCTC 59.894 66.667 4.18 0.00 45.60 3.20
568 579 6.273825 AGGTACGAATCTGTATTACTTGCAG 58.726 40.000 0.00 0.00 39.24 4.41
695 719 1.676678 ATCACCACCGTCCCATCTCG 61.677 60.000 0.00 0.00 0.00 4.04
696 720 0.179073 CATCACCACCGTCCCATCTC 60.179 60.000 0.00 0.00 0.00 2.75
697 721 1.626356 CCATCACCACCGTCCCATCT 61.626 60.000 0.00 0.00 0.00 2.90
698 722 1.153168 CCATCACCACCGTCCCATC 60.153 63.158 0.00 0.00 0.00 3.51
699 723 2.679342 CCCATCACCACCGTCCCAT 61.679 63.158 0.00 0.00 0.00 4.00
700 724 3.326578 CCCATCACCACCGTCCCA 61.327 66.667 0.00 0.00 0.00 4.37
736 760 1.133025 GGCAAATGGACGGTTCAGATG 59.867 52.381 0.00 0.00 0.00 2.90
782 806 0.234884 GTGGACGCAAAAAGGACTCG 59.765 55.000 0.00 0.00 0.00 4.18
784 808 0.463116 ACGTGGACGCAAAAAGGACT 60.463 50.000 0.00 0.00 44.43 3.85
788 812 1.164041 AGGGACGTGGACGCAAAAAG 61.164 55.000 0.00 0.00 44.43 2.27
792 816 0.968901 ATCTAGGGACGTGGACGCAA 60.969 55.000 0.00 0.00 44.43 4.85
793 817 0.968901 AATCTAGGGACGTGGACGCA 60.969 55.000 0.00 0.00 44.43 5.24
796 820 3.718815 GATTCAATCTAGGGACGTGGAC 58.281 50.000 0.00 0.00 0.00 4.02
799 823 3.438297 ACGATTCAATCTAGGGACGTG 57.562 47.619 0.00 0.00 0.00 4.49
800 824 4.467198 AAACGATTCAATCTAGGGACGT 57.533 40.909 0.00 0.00 0.00 4.34
802 826 6.594159 TCAGAAAAACGATTCAATCTAGGGAC 59.406 38.462 0.00 0.00 0.00 4.46
803 827 6.707290 TCAGAAAAACGATTCAATCTAGGGA 58.293 36.000 0.00 0.00 0.00 4.20
805 829 9.334693 CTTTTCAGAAAAACGATTCAATCTAGG 57.665 33.333 9.63 0.00 31.23 3.02
807 831 9.062524 TCCTTTTCAGAAAAACGATTCAATCTA 57.937 29.630 9.63 0.00 31.23 1.98
809 833 7.148902 GCTCCTTTTCAGAAAAACGATTCAATC 60.149 37.037 9.63 0.00 31.23 2.67
811 835 5.977129 GCTCCTTTTCAGAAAAACGATTCAA 59.023 36.000 9.63 0.00 31.23 2.69
812 836 5.507315 GGCTCCTTTTCAGAAAAACGATTCA 60.507 40.000 9.63 0.00 31.23 2.57
813 837 4.917998 GGCTCCTTTTCAGAAAAACGATTC 59.082 41.667 9.63 4.01 31.23 2.52
814 838 4.262036 GGGCTCCTTTTCAGAAAAACGATT 60.262 41.667 9.63 0.00 31.23 3.34
815 839 3.255888 GGGCTCCTTTTCAGAAAAACGAT 59.744 43.478 9.63 0.00 31.23 3.73
817 841 2.288213 GGGGCTCCTTTTCAGAAAAACG 60.288 50.000 9.63 3.41 31.23 3.60
818 842 2.037251 GGGGGCTCCTTTTCAGAAAAAC 59.963 50.000 0.52 0.54 31.23 2.43
820 844 1.821666 CGGGGGCTCCTTTTCAGAAAA 60.822 52.381 0.52 8.09 0.00 2.29
821 845 0.251165 CGGGGGCTCCTTTTCAGAAA 60.251 55.000 0.52 0.00 0.00 2.52
824 848 2.751837 GCGGGGGCTCCTTTTCAG 60.752 66.667 0.52 0.00 0.00 3.02
826 850 3.062466 GTGCGGGGGCTCCTTTTC 61.062 66.667 0.52 0.00 0.00 2.29
842 866 4.394712 CTTGCGGAGGCGGAAGGT 62.395 66.667 0.00 0.00 44.10 3.50
864 888 3.328535 TTGCTTCCCCTCTTTTCCTTT 57.671 42.857 0.00 0.00 0.00 3.11
868 892 1.068264 CGCTTTGCTTCCCCTCTTTTC 60.068 52.381 0.00 0.00 0.00 2.29
914 942 4.383861 TGTGCGGCTGCTCCTCTG 62.384 66.667 20.27 0.00 43.34 3.35
975 1008 4.752879 CTCCCCTCGGCGCGAAAA 62.753 66.667 12.10 0.00 34.74 2.29
1216 1257 2.759973 TAGCAGGGCAGAGACGGG 60.760 66.667 0.00 0.00 0.00 5.28
1372 1416 1.531149 CACCACCGTAAAACAGCTCTG 59.469 52.381 0.00 0.00 0.00 3.35
1566 1617 7.935338 ATTCAACAGAAACAATCACACATTC 57.065 32.000 0.00 0.00 0.00 2.67
1567 1618 8.632679 AGTATTCAACAGAAACAATCACACATT 58.367 29.630 0.00 0.00 0.00 2.71
1575 1626 7.392673 AGCTCATCAGTATTCAACAGAAACAAT 59.607 33.333 0.00 0.00 0.00 2.71
1603 1655 1.372087 CTCCTTGGCTGCATCCGAAC 61.372 60.000 1.44 0.00 0.00 3.95
1765 1986 4.626042 TGCATTCCAACATTGTACCAAAC 58.374 39.130 0.00 0.00 0.00 2.93
1840 2093 8.462016 GCAACTGAAACCAAACTAGATTATGAT 58.538 33.333 0.00 0.00 0.00 2.45
1857 2110 6.369890 TGCACAAAATTAAACAGCAACTGAAA 59.630 30.769 0.78 0.00 35.18 2.69
1903 2156 1.001487 TGTGCACAGGCGAAATTTCTG 60.001 47.619 17.42 9.99 45.35 3.02
1910 2163 0.814457 AAGTTTTGTGCACAGGCGAA 59.186 45.000 20.59 8.70 45.35 4.70
1940 2193 7.981789 TGAACGCTCTTATATTTCTTCACAGAT 59.018 33.333 0.00 0.00 0.00 2.90
1946 2199 8.484008 GTGATCTGAACGCTCTTATATTTCTTC 58.516 37.037 0.00 0.00 0.00 2.87
2018 2306 4.546829 TGCGACTAATTTGTACTCCCTT 57.453 40.909 0.00 0.00 0.00 3.95
2100 2388 2.027385 GGCCATCAGAACTTTCCCATC 58.973 52.381 0.00 0.00 0.00 3.51
2196 2484 3.827008 TCATCAGGCTGACTATTCACC 57.173 47.619 21.37 0.00 0.00 4.02
2202 2490 6.650427 ACGTAAATATCATCAGGCTGACTA 57.350 37.500 21.37 11.34 0.00 2.59
2511 2802 1.904440 AGAAAGGCATCCTGGGATCT 58.096 50.000 0.00 0.00 32.13 2.75
2513 2804 1.642762 ACAAGAAAGGCATCCTGGGAT 59.357 47.619 0.00 0.00 32.13 3.85
2527 2818 4.258543 CGCCTAACAAGGGAATACAAGAA 58.741 43.478 0.00 0.00 0.00 2.52
2696 2993 9.775854 ATCAAATCTCTAACATCTTAGACCATG 57.224 33.333 0.00 0.00 34.57 3.66
2916 3213 3.639538 TCAGAAAGCGTGACTGAACTAC 58.360 45.455 7.17 0.00 37.66 2.73
2940 3237 6.291377 TGATTTCTTGCAGAAAGTGACTAGT 58.709 36.000 13.99 0.00 46.15 2.57
3000 3300 2.561209 TTATCCCTACTCAGCACCCA 57.439 50.000 0.00 0.00 0.00 4.51
3051 3372 3.289525 GCTACTCAGCGGGTCACT 58.710 61.111 0.00 0.00 38.22 3.41
3279 3601 1.741706 CAAGCTGCAACCTGTATCCAG 59.258 52.381 1.02 0.00 38.50 3.86
3308 3630 6.166984 TGACCTACATTGGCAAATGAAAAA 57.833 33.333 20.90 2.31 45.17 1.94
3429 3751 2.926200 CTGCAAGTGGTACAGAATCTCG 59.074 50.000 0.00 0.00 41.80 4.04
3471 3793 5.043762 ACTTATTTTGGGATGGAGGGAGTA 58.956 41.667 0.00 0.00 0.00 2.59
3472 3794 3.858638 ACTTATTTTGGGATGGAGGGAGT 59.141 43.478 0.00 0.00 0.00 3.85
3473 3795 4.210331 CACTTATTTTGGGATGGAGGGAG 58.790 47.826 0.00 0.00 0.00 4.30
3474 3796 3.596046 ACACTTATTTTGGGATGGAGGGA 59.404 43.478 0.00 0.00 0.00 4.20
3475 3797 3.954258 GACACTTATTTTGGGATGGAGGG 59.046 47.826 0.00 0.00 0.00 4.30
3476 3798 4.860022 AGACACTTATTTTGGGATGGAGG 58.140 43.478 0.00 0.00 0.00 4.30
3477 3799 5.500234 TGAGACACTTATTTTGGGATGGAG 58.500 41.667 0.00 0.00 0.00 3.86
3478 3800 5.512942 TGAGACACTTATTTTGGGATGGA 57.487 39.130 0.00 0.00 0.00 3.41
3479 3801 5.393461 GCTTGAGACACTTATTTTGGGATGG 60.393 44.000 0.00 0.00 0.00 3.51
3480 3802 5.644644 GCTTGAGACACTTATTTTGGGATG 58.355 41.667 0.00 0.00 0.00 3.51
3481 3803 4.396166 CGCTTGAGACACTTATTTTGGGAT 59.604 41.667 0.00 0.00 0.00 3.85
3482 3804 3.751175 CGCTTGAGACACTTATTTTGGGA 59.249 43.478 0.00 0.00 0.00 4.37
3483 3805 3.502211 ACGCTTGAGACACTTATTTTGGG 59.498 43.478 0.00 0.00 0.00 4.12
3484 3806 4.749245 ACGCTTGAGACACTTATTTTGG 57.251 40.909 0.00 0.00 0.00 3.28
3485 3807 6.467723 ACTACGCTTGAGACACTTATTTTG 57.532 37.500 0.00 0.00 0.00 2.44
3486 3808 7.149973 TGTACTACGCTTGAGACACTTATTTT 58.850 34.615 0.00 0.00 0.00 1.82
3487 3809 6.684686 TGTACTACGCTTGAGACACTTATTT 58.315 36.000 0.00 0.00 0.00 1.40
3488 3810 6.263516 TGTACTACGCTTGAGACACTTATT 57.736 37.500 0.00 0.00 0.00 1.40
3489 3811 5.892160 TGTACTACGCTTGAGACACTTAT 57.108 39.130 0.00 0.00 0.00 1.73
3490 3812 5.240183 AGTTGTACTACGCTTGAGACACTTA 59.760 40.000 1.74 0.00 0.00 2.24
3491 3813 4.037684 AGTTGTACTACGCTTGAGACACTT 59.962 41.667 1.74 0.00 0.00 3.16
3492 3814 3.568853 AGTTGTACTACGCTTGAGACACT 59.431 43.478 1.74 0.00 0.00 3.55
3493 3815 3.898529 AGTTGTACTACGCTTGAGACAC 58.101 45.455 1.74 0.00 0.00 3.67
3494 3816 4.579454 AAGTTGTACTACGCTTGAGACA 57.421 40.909 1.74 0.00 0.00 3.41
3495 3817 5.916883 TGTAAAGTTGTACTACGCTTGAGAC 59.083 40.000 1.74 0.00 0.00 3.36
3496 3818 5.916883 GTGTAAAGTTGTACTACGCTTGAGA 59.083 40.000 1.74 0.00 0.00 3.27
3497 3819 5.919141 AGTGTAAAGTTGTACTACGCTTGAG 59.081 40.000 1.74 0.00 26.57 3.02
3498 3820 5.835257 AGTGTAAAGTTGTACTACGCTTGA 58.165 37.500 1.74 0.00 26.57 3.02
3499 3821 7.627585 TTAGTGTAAAGTTGTACTACGCTTG 57.372 36.000 9.68 0.00 31.96 4.01
3500 3822 8.290663 CTTTAGTGTAAAGTTGTACTACGCTT 57.709 34.615 9.68 6.78 40.13 4.68
3501 3823 7.864307 CTTTAGTGTAAAGTTGTACTACGCT 57.136 36.000 9.43 9.43 40.13 5.07
3517 3839 9.310716 GTCTCAACTTTGTACTAACTTTAGTGT 57.689 33.333 11.24 0.00 43.44 3.55
3518 3840 9.309516 TGTCTCAACTTTGTACTAACTTTAGTG 57.690 33.333 11.24 0.00 43.44 2.74
3519 3841 9.310716 GTGTCTCAACTTTGTACTAACTTTAGT 57.689 33.333 6.85 6.85 45.39 2.24
3520 3842 9.530633 AGTGTCTCAACTTTGTACTAACTTTAG 57.469 33.333 0.00 0.00 36.82 1.85
3521 3843 9.880157 AAGTGTCTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
3522 3844 8.788325 AAGTGTCTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
3528 3850 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
3529 3851 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
3530 3852 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
3531 3853 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
3532 3854 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
3533 3855 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
3534 3856 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
3535 3857 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
3536 3858 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
3537 3859 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3538 3860 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
3539 3861 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
3540 3862 3.581332 TCTCCGTCCCAAAATAAGTGTCT 59.419 43.478 0.00 0.00 0.00 3.41
3541 3863 3.933332 CTCTCCGTCCCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
3542 3864 3.326880 ACTCTCCGTCCCAAAATAAGTGT 59.673 43.478 0.00 0.00 0.00 3.55
3543 3865 3.939066 ACTCTCCGTCCCAAAATAAGTG 58.061 45.455 0.00 0.00 0.00 3.16
3544 3866 5.952347 ATACTCTCCGTCCCAAAATAAGT 57.048 39.130 0.00 0.00 0.00 2.24
3545 3867 7.442656 ACATATACTCTCCGTCCCAAAATAAG 58.557 38.462 0.00 0.00 0.00 1.73
3546 3868 7.369551 ACATATACTCTCCGTCCCAAAATAA 57.630 36.000 0.00 0.00 0.00 1.40
3547 3869 6.989155 ACATATACTCTCCGTCCCAAAATA 57.011 37.500 0.00 0.00 0.00 1.40
3548 3870 5.888982 ACATATACTCTCCGTCCCAAAAT 57.111 39.130 0.00 0.00 0.00 1.82
3549 3871 5.687166 AACATATACTCTCCGTCCCAAAA 57.313 39.130 0.00 0.00 0.00 2.44
3550 3872 6.325545 ACATAACATATACTCTCCGTCCCAAA 59.674 38.462 0.00 0.00 0.00 3.28
3551 3873 5.836898 ACATAACATATACTCTCCGTCCCAA 59.163 40.000 0.00 0.00 0.00 4.12
3552 3874 5.391256 ACATAACATATACTCTCCGTCCCA 58.609 41.667 0.00 0.00 0.00 4.37
3553 3875 5.979288 ACATAACATATACTCTCCGTCCC 57.021 43.478 0.00 0.00 0.00 4.46
3554 3876 8.235905 GTCTAACATAACATATACTCTCCGTCC 58.764 40.741 0.00 0.00 0.00 4.79
3555 3877 8.781196 TGTCTAACATAACATATACTCTCCGTC 58.219 37.037 0.00 0.00 0.00 4.79
3556 3878 8.566260 GTGTCTAACATAACATATACTCTCCGT 58.434 37.037 0.00 0.00 0.00 4.69
3557 3879 8.784994 AGTGTCTAACATAACATATACTCTCCG 58.215 37.037 0.00 0.00 0.00 4.63
3594 3916 6.037610 AGCAGAAGAAATGATCGAATGTTACC 59.962 38.462 0.00 0.00 0.00 2.85
3597 3919 6.072286 ACAAGCAGAAGAAATGATCGAATGTT 60.072 34.615 0.00 0.00 0.00 2.71
3608 3930 4.712476 ACTGAGACACAAGCAGAAGAAAT 58.288 39.130 0.00 0.00 33.94 2.17
3671 3994 7.857404 TTAAAACATTTAAGGTTCATGGGGA 57.143 32.000 0.00 0.00 0.00 4.81
3721 4044 6.540438 TCAATTAACTAGTTCGTCCCAGAT 57.460 37.500 12.39 0.00 0.00 2.90
3729 4052 9.227490 CAGAGACTACATCAATTAACTAGTTCG 57.773 37.037 12.39 0.00 0.00 3.95
3744 4067 7.453393 TCACAATTTTCTTCCAGAGACTACAT 58.547 34.615 0.00 0.00 33.02 2.29
3754 4077 7.288810 ACTAAAGCATCACAATTTTCTTCCA 57.711 32.000 0.00 0.00 0.00 3.53
3814 4137 2.493278 AGCATCACAATTTTCTTCCGGG 59.507 45.455 0.00 0.00 0.00 5.73
3868 4192 4.203226 TCACTGGTTGCACAACTTTCATA 58.797 39.130 12.87 0.00 40.94 2.15
3950 4274 1.408683 CCTACTTGGCAGCCATAGCAA 60.409 52.381 17.09 0.00 43.56 3.91
4093 4418 7.827236 TCCTTCATTTAATTAGTTGTGGACGAT 59.173 33.333 0.00 0.00 0.00 3.73
4126 4451 6.304356 CATGAGTGCTTAACTTCTTGTTGA 57.696 37.500 0.00 0.00 40.07 3.18
4156 4481 1.016130 CACACGCACTAAGGCCTCTG 61.016 60.000 5.23 4.25 0.00 3.35
4175 4500 2.202566 GCGGAAACTGCTAGTGATACC 58.797 52.381 0.00 0.00 0.00 2.73
4176 4501 2.202566 GGCGGAAACTGCTAGTGATAC 58.797 52.381 0.00 0.00 0.00 2.24
4183 4508 0.685097 ACTTCTGGCGGAAACTGCTA 59.315 50.000 10.47 0.00 33.07 3.49
4198 4523 3.743396 CGCATCCTATCTGCCTTAACTTC 59.257 47.826 0.00 0.00 36.24 3.01
4204 4529 1.071385 CCTTCGCATCCTATCTGCCTT 59.929 52.381 0.00 0.00 36.24 4.35
4233 4558 5.079643 ACCAAAGTGATGTATTGAAGGCTT 58.920 37.500 0.00 0.00 0.00 4.35
4274 4599 4.535526 AAAGCATGATTTAACCACCCAC 57.464 40.909 7.26 0.00 0.00 4.61
4296 4622 8.777865 CTGAGGACAGAAAAACAGACATATAA 57.222 34.615 0.00 0.00 46.03 0.98
4338 4664 4.085357 AGTGGTGAAGCTACAACATGAA 57.915 40.909 0.00 0.00 39.69 2.57
4343 4669 6.171213 ACCTAATAAGTGGTGAAGCTACAAC 58.829 40.000 0.00 0.00 34.90 3.32
4624 4956 1.899814 TCTGGTAAACTGATGGCGACT 59.100 47.619 0.00 0.00 0.00 4.18
4745 5078 4.863548 TCCGGATAAGAGAAGACAGGTAA 58.136 43.478 0.00 0.00 0.00 2.85
4890 5223 6.817765 TTGCAGAAAGAAGGGTATAACTTG 57.182 37.500 0.00 0.00 0.00 3.16
4891 5224 8.422577 AATTTGCAGAAAGAAGGGTATAACTT 57.577 30.769 0.00 0.00 0.00 2.66
4892 5225 8.422577 AAATTTGCAGAAAGAAGGGTATAACT 57.577 30.769 0.00 0.00 0.00 2.24
4893 5226 8.925700 CAAAATTTGCAGAAAGAAGGGTATAAC 58.074 33.333 0.00 0.00 0.00 1.89
5299 5635 7.867752 TGTAAACTGGCAGTAATGTTTCTAAC 58.132 34.615 22.37 6.98 34.88 2.34
5338 5674 4.989044 GAGTCTGACTACTCTACCAAAGC 58.011 47.826 10.86 0.00 42.21 3.51
5351 5687 6.295575 CCTTTATCTGTCCAAAGAGTCTGACT 60.296 42.308 10.66 10.66 34.35 3.41
5357 5693 5.843019 TTCCCTTTATCTGTCCAAAGAGT 57.157 39.130 0.00 0.00 34.35 3.24
5361 5697 6.780031 TGTTTGATTCCCTTTATCTGTCCAAA 59.220 34.615 0.00 0.00 0.00 3.28
5362 5698 6.208599 GTGTTTGATTCCCTTTATCTGTCCAA 59.791 38.462 0.00 0.00 0.00 3.53
5363 5699 5.710099 GTGTTTGATTCCCTTTATCTGTCCA 59.290 40.000 0.00 0.00 0.00 4.02
5366 5702 5.640147 TGGTGTTTGATTCCCTTTATCTGT 58.360 37.500 0.00 0.00 0.00 3.41
5367 5703 6.588719 TTGGTGTTTGATTCCCTTTATCTG 57.411 37.500 0.00 0.00 0.00 2.90
5369 5705 5.861787 CGTTTGGTGTTTGATTCCCTTTATC 59.138 40.000 0.00 0.00 0.00 1.75
5371 5707 4.888239 TCGTTTGGTGTTTGATTCCCTTTA 59.112 37.500 0.00 0.00 0.00 1.85
5377 5777 5.231357 GGTTCTTTCGTTTGGTGTTTGATTC 59.769 40.000 0.00 0.00 0.00 2.52
5401 5801 7.751348 GGAGCATCGATATAACTGTACAAGTAG 59.249 40.741 0.00 0.00 34.52 2.57
5422 5822 5.409214 GCTAAAGCAATCAAATTTTGGAGCA 59.591 36.000 17.28 0.00 41.59 4.26
5423 5823 5.861725 GCTAAAGCAATCAAATTTTGGAGC 58.138 37.500 9.18 10.27 41.59 4.70
5464 5865 8.646900 AGATGTATGATTTCCCTTCTCTTAGTC 58.353 37.037 0.00 0.00 0.00 2.59
5466 5867 8.646004 TCAGATGTATGATTTCCCTTCTCTTAG 58.354 37.037 0.00 0.00 0.00 2.18
5481 5882 8.324306 AGGAACTTTTCTGAATCAGATGTATGA 58.676 33.333 14.31 0.00 36.04 2.15
5482 5883 8.503458 AGGAACTTTTCTGAATCAGATGTATG 57.497 34.615 14.31 7.59 36.04 2.39
5504 6013 9.529325 CGTTCACAAATATAAGATGTTCTAGGA 57.471 33.333 0.00 0.00 0.00 2.94
5505 6014 8.765219 CCGTTCACAAATATAAGATGTTCTAGG 58.235 37.037 0.00 0.00 0.00 3.02
5506 6015 9.529325 TCCGTTCACAAATATAAGATGTTCTAG 57.471 33.333 0.00 0.00 0.00 2.43
5514 6029 9.362539 GAACTACTTCCGTTCACAAATATAAGA 57.637 33.333 0.00 0.00 40.27 2.10
5535 6050 8.431910 AAAAACAGAGGGAGTAGTATGAACTA 57.568 34.615 0.00 0.00 37.15 2.24
5546 6061 9.588096 AGACAAATATTTAAAAACAGAGGGAGT 57.412 29.630 0.00 0.00 0.00 3.85
5570 6085 9.778741 AGTAGTCATTTGAAATGTCTACAAAGA 57.221 29.630 34.42 14.49 40.54 2.52
5573 6088 9.990360 TGTAGTAGTCATTTGAAATGTCTACAA 57.010 29.630 34.42 24.59 40.54 2.41
5577 6092 9.302345 CGTATGTAGTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
5578 6093 8.540492 CCGTATGTAGTAGTCATTTGAAATGTC 58.460 37.037 16.62 11.74 0.00 3.06
5579 6094 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
5580 6095 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
5581 6096 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
5582 6097 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
5583 6098 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
5584 6099 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
5627 6142 7.141363 ACAAAGCAAAATGAGTGAATCTACAC 58.859 34.615 0.00 0.00 40.60 2.90
5628 6143 7.275888 ACAAAGCAAAATGAGTGAATCTACA 57.724 32.000 0.00 0.00 0.00 2.74
5629 6144 9.282247 CATACAAAGCAAAATGAGTGAATCTAC 57.718 33.333 0.00 0.00 0.00 2.59
5630 6145 9.013229 ACATACAAAGCAAAATGAGTGAATCTA 57.987 29.630 0.00 0.00 0.00 1.98
5631 6146 7.889469 ACATACAAAGCAAAATGAGTGAATCT 58.111 30.769 0.00 0.00 0.00 2.40
5632 6147 9.282247 CTACATACAAAGCAAAATGAGTGAATC 57.718 33.333 0.00 0.00 0.00 2.52
5633 6148 8.796475 ACTACATACAAAGCAAAATGAGTGAAT 58.204 29.630 0.00 0.00 0.00 2.57
5634 6149 8.165239 ACTACATACAAAGCAAAATGAGTGAA 57.835 30.769 0.00 0.00 0.00 3.18
5635 6150 7.443879 TGACTACATACAAAGCAAAATGAGTGA 59.556 33.333 0.00 0.00 0.00 3.41
5636 6151 7.535258 GTGACTACATACAAAGCAAAATGAGTG 59.465 37.037 0.00 0.00 0.00 3.51
5637 6152 7.445402 AGTGACTACATACAAAGCAAAATGAGT 59.555 33.333 0.00 0.00 0.00 3.41
5638 6153 7.810658 AGTGACTACATACAAAGCAAAATGAG 58.189 34.615 0.00 0.00 0.00 2.90
5639 6154 7.744087 AGTGACTACATACAAAGCAAAATGA 57.256 32.000 0.00 0.00 0.00 2.57
5640 6155 7.862372 ACAAGTGACTACATACAAAGCAAAATG 59.138 33.333 0.00 0.00 0.00 2.32
5641 6156 7.940850 ACAAGTGACTACATACAAAGCAAAAT 58.059 30.769 0.00 0.00 0.00 1.82
5642 6157 7.328277 ACAAGTGACTACATACAAAGCAAAA 57.672 32.000 0.00 0.00 0.00 2.44
5643 6158 6.935741 ACAAGTGACTACATACAAAGCAAA 57.064 33.333 0.00 0.00 0.00 3.68
5644 6159 6.540551 TCAACAAGTGACTACATACAAAGCAA 59.459 34.615 0.00 0.00 0.00 3.91
5645 6160 6.052360 TCAACAAGTGACTACATACAAAGCA 58.948 36.000 0.00 0.00 0.00 3.91
5646 6161 6.539649 TCAACAAGTGACTACATACAAAGC 57.460 37.500 0.00 0.00 0.00 3.51
5647 6162 9.385902 CATTTCAACAAGTGACTACATACAAAG 57.614 33.333 0.00 0.00 35.39 2.77
5648 6163 7.860373 GCATTTCAACAAGTGACTACATACAAA 59.140 33.333 0.00 0.00 35.39 2.83
5649 6164 7.359595 GCATTTCAACAAGTGACTACATACAA 58.640 34.615 0.00 0.00 35.39 2.41
5650 6165 6.072728 GGCATTTCAACAAGTGACTACATACA 60.073 38.462 0.00 0.00 35.39 2.29
5651 6166 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
5652 6167 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
5653 6168 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
5654 6169 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
5655 6170 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
5656 6171 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
5657 6172 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
5658 6173 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
5659 6174 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
5660 6175 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
5661 6176 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
5662 6177 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
5663 6178 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
5664 6179 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
5665 6180 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
5666 6181 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
5667 6182 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
5670 6185 9.740710 AGTTAAATACTTGTCTTTCTAGGCATT 57.259 29.630 0.00 0.00 35.56 3.56
5671 6186 9.740710 AAGTTAAATACTTGTCTTTCTAGGCAT 57.259 29.630 0.00 0.00 45.33 4.40
5672 6187 9.569122 AAAGTTAAATACTTGTCTTTCTAGGCA 57.431 29.630 0.00 0.00 46.34 4.75
5686 6201 9.507329 TGCTTCAGAATCAGAAAGTTAAATACT 57.493 29.630 0.00 0.00 39.32 2.12
5699 6214 5.179742 GGAGATAGCAATGCTTCAGAATCAG 59.820 44.000 14.85 0.00 40.44 2.90
5700 6215 5.061853 GGAGATAGCAATGCTTCAGAATCA 58.938 41.667 14.85 0.00 40.44 2.57
5701 6216 5.061853 TGGAGATAGCAATGCTTCAGAATC 58.938 41.667 14.85 9.98 40.44 2.52
5702 6217 5.045012 TGGAGATAGCAATGCTTCAGAAT 57.955 39.130 14.85 0.00 40.44 2.40
5712 6374 6.239829 CCTGGAACTAATCTGGAGATAGCAAT 60.240 42.308 0.00 0.00 33.73 3.56
5738 6401 8.816144 GTTTCAACAGCAGATAACAAATTCAAA 58.184 29.630 0.00 0.00 0.00 2.69
5759 6427 5.736951 ATTCCAATTCCAATTCGGTTTCA 57.263 34.783 0.00 0.00 35.57 2.69
5789 6457 5.633601 TCCGTATATTCTTATTTCAGCAGCG 59.366 40.000 0.00 0.00 0.00 5.18
5829 6500 3.328343 TCCCCGTCTTTAAACTTCATCCA 59.672 43.478 0.00 0.00 0.00 3.41
5871 6542 1.376037 GGCGGAGGAGGTTGAGTTG 60.376 63.158 0.00 0.00 0.00 3.16
5872 6543 2.943978 CGGCGGAGGAGGTTGAGTT 61.944 63.158 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.