Multiple sequence alignment - TraesCS2A01G495000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G495000 chr2A 100.000 2405 0 0 1 2405 726591804 726594208 0.000000e+00 4442.0
1 TraesCS2A01G495000 chr2A 79.494 712 88 33 980 1654 726560843 726561533 1.010000e-123 453.0
2 TraesCS2A01G495000 chr2A 85.279 394 34 12 937 1312 726756016 726756403 3.750000e-103 385.0
3 TraesCS2A01G495000 chr5A 93.782 788 35 7 1 786 622115108 622115883 0.000000e+00 1171.0
4 TraesCS2A01G495000 chr5A 93.782 788 35 6 1 786 708191066 708190291 0.000000e+00 1171.0
5 TraesCS2A01G495000 chr5A 87.654 81 8 2 824 903 589024039 589023960 2.550000e-15 93.5
6 TraesCS2A01G495000 chr7A 92.513 788 45 6 1 786 636732890 636733665 0.000000e+00 1116.0
7 TraesCS2A01G495000 chr7A 90.244 82 6 2 824 904 27643441 27643361 3.270000e-19 106.0
8 TraesCS2A01G495000 chr7A 90.244 82 6 2 824 904 27668089 27668009 3.270000e-19 106.0
9 TraesCS2A01G495000 chr2D 91.571 700 27 13 96 793 453705672 453705003 0.000000e+00 937.0
10 TraesCS2A01G495000 chr2D 92.965 597 41 1 901 1497 592080366 592080961 0.000000e+00 869.0
11 TraesCS2A01G495000 chr2D 91.734 617 49 2 901 1515 592092185 592092801 0.000000e+00 856.0
12 TraesCS2A01G495000 chr2D 91.262 618 47 5 901 1515 592115420 592116033 0.000000e+00 835.0
13 TraesCS2A01G495000 chr2D 82.516 938 93 28 1514 2405 592092841 592093753 0.000000e+00 758.0
14 TraesCS2A01G495000 chr2D 80.055 727 96 29 972 1652 592031200 592031923 5.970000e-136 494.0
15 TraesCS2A01G495000 chr2D 79.515 371 45 20 1570 1914 592116114 592116479 4.000000e-58 235.0
16 TraesCS2A01G495000 chr2D 86.486 185 10 4 1609 1778 592081077 592081261 3.160000e-44 189.0
17 TraesCS2A01G495000 chr2D 98.958 96 1 0 1 96 453711369 453711274 3.180000e-39 172.0
18 TraesCS2A01G495000 chr2B 89.251 614 60 5 901 1509 717775721 717776333 0.000000e+00 763.0
19 TraesCS2A01G495000 chr2B 89.462 446 37 3 1080 1515 717693910 717694355 2.700000e-154 555.0
20 TraesCS2A01G495000 chr2B 82.895 532 66 13 974 1480 717678658 717679189 2.820000e-124 455.0
21 TraesCS2A01G495000 chr2B 84.826 402 36 13 933 1312 717895995 717896393 4.850000e-102 381.0
22 TraesCS2A01G495000 chr2B 87.900 281 18 7 1514 1778 717694395 717694675 1.390000e-82 316.0
23 TraesCS2A01G495000 chr2B 83.774 265 35 8 1514 1778 717776391 717776647 6.640000e-61 244.0
24 TraesCS2A01G495000 chr2B 91.379 174 15 0 1 174 770341787 770341960 3.090000e-59 239.0
25 TraesCS2A01G495000 chr2B 91.139 79 7 0 824 902 483441486 483441408 9.090000e-20 108.0
26 TraesCS2A01G495000 chr2B 85.135 74 11 0 824 897 740741846 740741919 2.560000e-10 76.8
27 TraesCS2A01G495000 chr2B 100.000 31 0 0 1485 1515 717776321 717776351 9.290000e-05 58.4
28 TraesCS2A01G495000 chr4B 92.683 533 28 4 250 781 25010799 25011321 0.000000e+00 758.0
29 TraesCS2A01G495000 chr4B 85.890 163 22 1 2073 2235 624725207 624725046 3.180000e-39 172.0
30 TraesCS2A01G495000 chr1A 91.636 538 34 4 250 786 376753844 376753317 0.000000e+00 734.0
31 TraesCS2A01G495000 chr1A 85.632 174 22 1 2073 2246 469201957 469201787 1.900000e-41 180.0
32 TraesCS2A01G495000 chr1A 88.750 80 9 0 824 903 27382805 27382884 5.470000e-17 99.0
33 TraesCS2A01G495000 chr3D 86.628 172 23 0 2073 2244 562514485 562514314 8.780000e-45 191.0
34 TraesCS2A01G495000 chr6B 85.549 173 24 1 2073 2244 279006094 279006266 1.900000e-41 180.0
35 TraesCS2A01G495000 chr6B 84.971 173 26 0 2073 2245 518677192 518677020 2.460000e-40 176.0
36 TraesCS2A01G495000 chr6D 85.714 168 24 0 2073 2240 121386781 121386614 6.830000e-41 178.0
37 TraesCS2A01G495000 chr6D 97.436 39 1 0 748 786 59095012 59095050 1.540000e-07 67.6
38 TraesCS2A01G495000 chr4D 85.542 166 24 0 2073 2238 460585046 460585211 8.840000e-40 174.0
39 TraesCS2A01G495000 chr4D 97.561 41 1 0 746 786 86778815 86778855 1.190000e-08 71.3
40 TraesCS2A01G495000 chr1D 85.542 166 24 0 2075 2240 441094165 441094330 8.840000e-40 174.0
41 TraesCS2A01G495000 chr3A 84.302 172 27 0 2073 2244 725469527 725469698 4.110000e-38 169.0
42 TraesCS2A01G495000 chr7B 89.041 73 8 0 837 909 484904803 484904731 9.160000e-15 91.6
43 TraesCS2A01G495000 chr7B 85.000 80 12 0 824 903 49368509 49368588 5.510000e-12 82.4
44 TraesCS2A01G495000 chr5B 86.250 80 11 0 824 903 579594469 579594390 1.180000e-13 87.9
45 TraesCS2A01G495000 chr4A 97.561 41 1 0 746 786 510639006 510638966 1.190000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G495000 chr2A 726591804 726594208 2404 False 4442.000000 4442 100.000000 1 2405 1 chr2A.!!$F2 2404
1 TraesCS2A01G495000 chr2A 726560843 726561533 690 False 453.000000 453 79.494000 980 1654 1 chr2A.!!$F1 674
2 TraesCS2A01G495000 chr5A 622115108 622115883 775 False 1171.000000 1171 93.782000 1 786 1 chr5A.!!$F1 785
3 TraesCS2A01G495000 chr5A 708190291 708191066 775 True 1171.000000 1171 93.782000 1 786 1 chr5A.!!$R2 785
4 TraesCS2A01G495000 chr7A 636732890 636733665 775 False 1116.000000 1116 92.513000 1 786 1 chr7A.!!$F1 785
5 TraesCS2A01G495000 chr2D 453705003 453705672 669 True 937.000000 937 91.571000 96 793 1 chr2D.!!$R1 697
6 TraesCS2A01G495000 chr2D 592092185 592093753 1568 False 807.000000 856 87.125000 901 2405 2 chr2D.!!$F3 1504
7 TraesCS2A01G495000 chr2D 592115420 592116479 1059 False 535.000000 835 85.388500 901 1914 2 chr2D.!!$F4 1013
8 TraesCS2A01G495000 chr2D 592080366 592081261 895 False 529.000000 869 89.725500 901 1778 2 chr2D.!!$F2 877
9 TraesCS2A01G495000 chr2D 592031200 592031923 723 False 494.000000 494 80.055000 972 1652 1 chr2D.!!$F1 680
10 TraesCS2A01G495000 chr2B 717678658 717679189 531 False 455.000000 455 82.895000 974 1480 1 chr2B.!!$F1 506
11 TraesCS2A01G495000 chr2B 717693910 717694675 765 False 435.500000 555 88.681000 1080 1778 2 chr2B.!!$F5 698
12 TraesCS2A01G495000 chr2B 717775721 717776647 926 False 355.133333 763 91.008333 901 1778 3 chr2B.!!$F6 877
13 TraesCS2A01G495000 chr4B 25010799 25011321 522 False 758.000000 758 92.683000 250 781 1 chr4B.!!$F1 531
14 TraesCS2A01G495000 chr1A 376753317 376753844 527 True 734.000000 734 91.636000 250 786 1 chr1A.!!$R1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
829 832 0.846693 GGGCCACTGGACTATTGGAT 59.153 55.0 4.39 0.0 30.93 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2306 2499 0.032615 CACTGCCTAGACCCCTCTCT 60.033 60.0 0.0 0.0 0.0 3.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 5.542779 ACACTCTTGGTTGATACAGAGAAC 58.457 41.667 2.09 0.00 0.00 3.01
132 134 5.344207 AGAAAACGTAGCACATCAAAGAC 57.656 39.130 0.00 0.00 0.00 3.01
161 163 6.474102 GGTTTCTTTAACAATCTTTGACGCAA 59.526 34.615 0.00 0.00 38.55 4.85
168 170 5.248870 ACAATCTTTGACGCAACTTCTTT 57.751 34.783 0.00 0.00 0.00 2.52
359 362 4.141937 CCGAATCTTGGATTGGTGAGTCTA 60.142 45.833 0.00 0.00 0.00 2.59
382 385 1.374631 GCAGCAGACCACATCGACA 60.375 57.895 0.00 0.00 0.00 4.35
439 442 2.324330 CCAGCGCACCATGAAACGA 61.324 57.895 11.47 0.00 0.00 3.85
457 460 2.348998 CACAGAGCTGGTCACCCC 59.651 66.667 9.78 0.00 34.19 4.95
718 721 2.833582 GAGGTCGCCGGATCCAGA 60.834 66.667 13.41 4.97 0.00 3.86
741 744 4.077184 GACATGGGTCCACGCGGA 62.077 66.667 12.47 0.00 38.12 5.54
822 825 3.953775 CAACCGGGCCACTGGACT 61.954 66.667 14.24 0.00 46.80 3.85
823 826 2.203877 AACCGGGCCACTGGACTA 60.204 61.111 14.24 0.00 46.80 2.59
824 827 1.615424 AACCGGGCCACTGGACTAT 60.615 57.895 14.24 0.00 46.80 2.12
825 828 1.205460 AACCGGGCCACTGGACTATT 61.205 55.000 14.24 0.00 46.80 1.73
826 829 1.153168 CCGGGCCACTGGACTATTG 60.153 63.158 4.39 0.00 46.80 1.90
827 830 1.153168 CGGGCCACTGGACTATTGG 60.153 63.158 4.39 0.00 32.48 3.16
828 831 1.622607 CGGGCCACTGGACTATTGGA 61.623 60.000 4.39 0.00 30.93 3.53
829 832 0.846693 GGGCCACTGGACTATTGGAT 59.153 55.000 4.39 0.00 30.93 3.41
830 833 1.202818 GGGCCACTGGACTATTGGATC 60.203 57.143 4.39 0.00 30.93 3.36
831 834 1.771255 GGCCACTGGACTATTGGATCT 59.229 52.381 0.00 0.00 30.93 2.75
832 835 2.173569 GGCCACTGGACTATTGGATCTT 59.826 50.000 0.00 0.00 30.93 2.40
833 836 3.209410 GCCACTGGACTATTGGATCTTG 58.791 50.000 0.00 0.00 30.93 3.02
834 837 3.118261 GCCACTGGACTATTGGATCTTGA 60.118 47.826 0.00 0.00 30.93 3.02
835 838 4.445448 GCCACTGGACTATTGGATCTTGAT 60.445 45.833 0.00 0.00 30.93 2.57
836 839 5.061853 CCACTGGACTATTGGATCTTGATG 58.938 45.833 0.00 0.00 30.93 3.07
837 840 5.163269 CCACTGGACTATTGGATCTTGATGA 60.163 44.000 0.00 0.00 30.93 2.92
838 841 6.465464 CCACTGGACTATTGGATCTTGATGAT 60.465 42.308 0.00 0.00 38.27 2.45
839 842 6.427242 CACTGGACTATTGGATCTTGATGATG 59.573 42.308 0.00 0.00 35.14 3.07
840 843 6.328410 ACTGGACTATTGGATCTTGATGATGA 59.672 38.462 0.00 0.00 35.14 2.92
841 844 7.140522 TGGACTATTGGATCTTGATGATGAA 57.859 36.000 0.00 0.00 35.14 2.57
842 845 7.752638 TGGACTATTGGATCTTGATGATGAAT 58.247 34.615 0.00 0.00 35.14 2.57
843 846 7.664318 TGGACTATTGGATCTTGATGATGAATG 59.336 37.037 0.00 0.00 35.14 2.67
844 847 7.120873 GGACTATTGGATCTTGATGATGAATGG 59.879 40.741 0.00 0.00 35.14 3.16
845 848 7.752638 ACTATTGGATCTTGATGATGAATGGA 58.247 34.615 0.00 0.00 35.14 3.41
846 849 8.391699 ACTATTGGATCTTGATGATGAATGGAT 58.608 33.333 0.00 0.00 35.14 3.41
847 850 9.901172 CTATTGGATCTTGATGATGAATGGATA 57.099 33.333 0.00 0.00 35.14 2.59
849 852 8.575649 TTGGATCTTGATGATGAATGGATATG 57.424 34.615 0.00 0.00 35.14 1.78
850 853 7.924541 TGGATCTTGATGATGAATGGATATGA 58.075 34.615 0.00 0.00 35.14 2.15
851 854 8.557450 TGGATCTTGATGATGAATGGATATGAT 58.443 33.333 0.00 0.00 35.14 2.45
852 855 9.409918 GGATCTTGATGATGAATGGATATGATT 57.590 33.333 0.00 0.00 35.14 2.57
854 857 9.755122 ATCTTGATGATGAATGGATATGATTGT 57.245 29.630 0.00 0.00 33.43 2.71
855 858 9.582648 TCTTGATGATGAATGGATATGATTGTT 57.417 29.630 0.00 0.00 0.00 2.83
857 860 9.974980 TTGATGATGAATGGATATGATTGTTTG 57.025 29.630 0.00 0.00 0.00 2.93
858 861 9.357161 TGATGATGAATGGATATGATTGTTTGA 57.643 29.630 0.00 0.00 0.00 2.69
864 867 9.192642 TGAATGGATATGATTGTTTGAATCTGT 57.807 29.630 0.00 0.00 0.00 3.41
865 868 9.674824 GAATGGATATGATTGTTTGAATCTGTC 57.325 33.333 0.00 0.00 0.00 3.51
866 869 7.572523 TGGATATGATTGTTTGAATCTGTCC 57.427 36.000 0.00 0.00 0.00 4.02
867 870 7.348815 TGGATATGATTGTTTGAATCTGTCCT 58.651 34.615 0.00 0.00 0.00 3.85
868 871 7.835682 TGGATATGATTGTTTGAATCTGTCCTT 59.164 33.333 0.00 0.00 0.00 3.36
869 872 8.348507 GGATATGATTGTTTGAATCTGTCCTTC 58.651 37.037 0.00 0.00 0.00 3.46
870 873 9.118300 GATATGATTGTTTGAATCTGTCCTTCT 57.882 33.333 0.00 0.00 0.00 2.85
871 874 7.771927 ATGATTGTTTGAATCTGTCCTTCTT 57.228 32.000 0.00 0.00 0.00 2.52
872 875 7.587037 TGATTGTTTGAATCTGTCCTTCTTT 57.413 32.000 0.00 0.00 0.00 2.52
873 876 8.010733 TGATTGTTTGAATCTGTCCTTCTTTT 57.989 30.769 0.00 0.00 0.00 2.27
874 877 8.137437 TGATTGTTTGAATCTGTCCTTCTTTTC 58.863 33.333 0.00 0.00 0.00 2.29
875 878 6.391227 TGTTTGAATCTGTCCTTCTTTTCC 57.609 37.500 0.00 0.00 0.00 3.13
876 879 6.129179 TGTTTGAATCTGTCCTTCTTTTCCT 58.871 36.000 0.00 0.00 0.00 3.36
877 880 6.607198 TGTTTGAATCTGTCCTTCTTTTCCTT 59.393 34.615 0.00 0.00 0.00 3.36
878 881 7.124147 TGTTTGAATCTGTCCTTCTTTTCCTTT 59.876 33.333 0.00 0.00 0.00 3.11
879 882 7.660030 TTGAATCTGTCCTTCTTTTCCTTTT 57.340 32.000 0.00 0.00 0.00 2.27
880 883 8.760980 TTGAATCTGTCCTTCTTTTCCTTTTA 57.239 30.769 0.00 0.00 0.00 1.52
881 884 8.940397 TGAATCTGTCCTTCTTTTCCTTTTAT 57.060 30.769 0.00 0.00 0.00 1.40
885 888 8.848474 TCTGTCCTTCTTTTCCTTTTATAGTG 57.152 34.615 0.00 0.00 0.00 2.74
886 889 7.883311 TCTGTCCTTCTTTTCCTTTTATAGTGG 59.117 37.037 0.00 0.00 0.00 4.00
887 890 7.523415 TGTCCTTCTTTTCCTTTTATAGTGGT 58.477 34.615 0.00 0.00 0.00 4.16
888 891 8.662255 TGTCCTTCTTTTCCTTTTATAGTGGTA 58.338 33.333 0.00 0.00 0.00 3.25
889 892 9.163899 GTCCTTCTTTTCCTTTTATAGTGGTAG 57.836 37.037 0.00 0.00 0.00 3.18
890 893 8.887393 TCCTTCTTTTCCTTTTATAGTGGTAGT 58.113 33.333 0.00 0.00 0.00 2.73
927 930 4.690719 CTGCCCCGCCACGTACAA 62.691 66.667 0.00 0.00 0.00 2.41
935 938 1.019278 CGCCACGTACAAGAAGCCAT 61.019 55.000 0.00 0.00 0.00 4.40
942 945 2.854777 CGTACAAGAAGCCATCTCTTCG 59.145 50.000 0.00 0.00 45.28 3.79
1028 1033 0.385029 TGCAGCAACATCCACAACAC 59.615 50.000 0.00 0.00 0.00 3.32
1227 1235 1.484444 GGCAGGCGGAGGAGGAATAT 61.484 60.000 0.00 0.00 0.00 1.28
1408 1434 2.024319 GAGCTCGTGTGGTGACTGC 61.024 63.158 0.00 0.00 0.00 4.40
1413 1439 2.302952 CGTGTGGTGACTGCTGACG 61.303 63.158 0.00 0.00 0.00 4.35
1415 1441 2.131067 TGTGGTGACTGCTGACGGA 61.131 57.895 0.00 0.00 0.00 4.69
1416 1442 1.293498 GTGGTGACTGCTGACGGAT 59.707 57.895 0.00 0.00 0.00 4.18
1467 1503 3.194542 GCTCTGTTCTCACATGAGGTAGT 59.805 47.826 8.99 0.00 42.30 2.73
1599 1721 3.315949 GGTCCGGTGCCTGGTGTA 61.316 66.667 0.00 0.00 0.00 2.90
1600 1722 2.264794 GTCCGGTGCCTGGTGTAG 59.735 66.667 0.00 0.00 0.00 2.74
1601 1723 3.702048 TCCGGTGCCTGGTGTAGC 61.702 66.667 0.00 0.00 0.00 3.58
1765 1906 0.385390 GCATTCCTTGCCGGTAATGG 59.615 55.000 5.11 9.73 46.15 3.16
1778 1919 4.577283 GCCGGTAATGGTAAAGAATTGCTA 59.423 41.667 1.90 0.00 0.00 3.49
1779 1920 5.066764 GCCGGTAATGGTAAAGAATTGCTAA 59.933 40.000 1.90 0.00 0.00 3.09
1780 1921 6.238925 GCCGGTAATGGTAAAGAATTGCTAAT 60.239 38.462 1.90 0.00 0.00 1.73
1798 1961 1.588239 ATGTCTTGGCTCTCCATGGA 58.412 50.000 15.27 15.27 43.05 3.41
1799 1962 0.615331 TGTCTTGGCTCTCCATGGAC 59.385 55.000 11.44 1.07 43.05 4.02
1800 1963 0.107459 GTCTTGGCTCTCCATGGACC 60.107 60.000 11.44 11.82 43.05 4.46
1801 1964 0.547471 TCTTGGCTCTCCATGGACCA 60.547 55.000 16.68 16.68 43.05 4.02
1802 1965 0.549950 CTTGGCTCTCCATGGACCAT 59.450 55.000 20.22 0.00 43.05 3.55
1803 1966 0.256752 TTGGCTCTCCATGGACCATG 59.743 55.000 25.27 25.27 43.05 3.66
1821 1984 1.533625 TGGGTGTCATTAGCTGTTGC 58.466 50.000 0.00 0.00 40.05 4.17
1841 2004 8.105097 TGTTGCATTATCTGTTTTGCTAACTA 57.895 30.769 0.00 0.00 36.10 2.24
1863 2026 7.484975 ACTATCCATCGACTAAGAACTTTCTG 58.515 38.462 0.00 0.00 37.65 3.02
1864 2027 5.723672 TCCATCGACTAAGAACTTTCTGT 57.276 39.130 0.00 0.00 37.65 3.41
1874 2037 7.352739 ACTAAGAACTTTCTGTTTAATGTGCG 58.647 34.615 0.00 0.00 39.30 5.34
1883 2046 4.391830 TCTGTTTAATGTGCGAGATTCACC 59.608 41.667 0.00 0.00 33.71 4.02
1910 2073 7.011482 GCTTTATAAACTCCGAGATCACATGTT 59.989 37.037 1.33 0.00 0.00 2.71
1921 2084 5.402568 CGAGATCACATGTTAAGGATAACCG 59.597 44.000 0.00 0.00 40.61 4.44
1935 2098 2.023414 TAACCGCGGCCGAGATCAAT 62.023 55.000 33.48 12.85 36.29 2.57
1981 2144 5.751586 TCGAAAATAAAGATAACCCAGCCT 58.248 37.500 0.00 0.00 0.00 4.58
1983 2146 6.317893 TCGAAAATAAAGATAACCCAGCCTTC 59.682 38.462 0.00 0.00 0.00 3.46
1984 2147 6.451064 AAAATAAAGATAACCCAGCCTTCG 57.549 37.500 0.00 0.00 0.00 3.79
1985 2148 1.751437 AAAGATAACCCAGCCTTCGC 58.249 50.000 0.00 0.00 0.00 4.70
1986 2149 0.618458 AAGATAACCCAGCCTTCGCA 59.382 50.000 0.00 0.00 37.52 5.10
1987 2150 0.839946 AGATAACCCAGCCTTCGCAT 59.160 50.000 0.00 0.00 37.52 4.73
1988 2151 1.202698 AGATAACCCAGCCTTCGCATC 60.203 52.381 0.00 0.00 37.52 3.91
1989 2152 0.532862 ATAACCCAGCCTTCGCATCG 60.533 55.000 0.00 0.00 37.52 3.84
1990 2153 1.609635 TAACCCAGCCTTCGCATCGA 61.610 55.000 0.00 0.00 37.52 3.59
2073 2238 7.413109 CGATCTATTCATCTTCAATCATGGCAG 60.413 40.741 0.00 0.00 0.00 4.85
2079 2244 4.918129 CAATCATGGCAGGCGCGC 62.918 66.667 25.94 25.94 39.92 6.86
2101 2266 3.917760 GTCATCGCCCCTCCCTCG 61.918 72.222 0.00 0.00 0.00 4.63
2102 2267 4.458829 TCATCGCCCCTCCCTCGT 62.459 66.667 0.00 0.00 0.00 4.18
2103 2268 3.470888 CATCGCCCCTCCCTCGTT 61.471 66.667 0.00 0.00 0.00 3.85
2104 2269 2.131709 CATCGCCCCTCCCTCGTTA 61.132 63.158 0.00 0.00 0.00 3.18
2111 2276 1.453379 CCTCCCTCGTTAGAGCCGA 60.453 63.158 0.00 0.00 43.05 5.54
2125 2290 1.065551 GAGCCGAGCAAAACTTGTTGT 59.934 47.619 0.00 0.00 0.00 3.32
2130 2295 4.610680 GCCGAGCAAAACTTGTTGTAGTAG 60.611 45.833 0.00 0.00 0.00 2.57
2132 2297 5.333111 CCGAGCAAAACTTGTTGTAGTAGAC 60.333 44.000 0.00 0.00 0.00 2.59
2139 2304 5.609533 ACTTGTTGTAGTAGACAGTTGGT 57.390 39.130 0.00 0.00 39.88 3.67
2146 2311 5.065914 TGTAGTAGACAGTTGGTAAGTCGT 58.934 41.667 0.00 0.00 37.36 4.34
2170 2335 1.138266 GCTAAGGCATCGTAGGACCAA 59.862 52.381 0.00 0.00 38.54 3.67
2181 2346 4.084287 TCGTAGGACCAACACACTAGAAT 58.916 43.478 0.00 0.00 0.00 2.40
2183 2348 5.356190 TCGTAGGACCAACACACTAGAATAG 59.644 44.000 0.00 0.00 46.50 1.73
2193 2358 1.457303 CACTAGAATAGCAATCGCCGC 59.543 52.381 0.00 0.00 44.39 6.53
2194 2359 1.071605 CTAGAATAGCAATCGCCGCC 58.928 55.000 0.00 0.00 39.83 6.13
2210 2375 1.121240 CGCCGATAAAGAGTAGCGTG 58.879 55.000 0.00 0.00 38.81 5.34
2216 2381 3.566523 GATAAAGAGTAGCGTGGATCGG 58.433 50.000 0.00 0.00 40.26 4.18
2249 2424 4.224433 TCTAAAGACACACGAACGATGAC 58.776 43.478 0.14 0.26 0.00 3.06
2268 2458 1.139734 CAGATCCACCGGAGACACG 59.860 63.158 9.46 0.00 34.05 4.49
2272 2462 4.003788 CCACCGGAGACACGCCTT 62.004 66.667 9.46 0.00 0.00 4.35
2284 2474 2.261671 CGCCTTCACACGCCTACT 59.738 61.111 0.00 0.00 0.00 2.57
2315 2508 2.930562 GCACCACCAGAGAGGGGT 60.931 66.667 0.00 0.00 40.16 4.95
2324 2517 0.032615 CAGAGAGGGGTCTAGGCAGT 60.033 60.000 0.00 0.00 0.00 4.40
2325 2518 0.032615 AGAGAGGGGTCTAGGCAGTG 60.033 60.000 0.00 0.00 0.00 3.66
2327 2520 0.413832 AGAGGGGTCTAGGCAGTGAA 59.586 55.000 0.00 0.00 0.00 3.18
2331 2524 1.562783 GGGTCTAGGCAGTGAAGACT 58.437 55.000 15.87 2.67 39.65 3.24
2351 2544 5.966935 AGACTTTATTCCATCTTCAGGGAGA 59.033 40.000 0.00 0.00 34.02 3.71
2352 2545 5.995446 ACTTTATTCCATCTTCAGGGAGAC 58.005 41.667 0.00 0.00 34.02 3.36
2353 2546 5.488919 ACTTTATTCCATCTTCAGGGAGACA 59.511 40.000 0.00 0.00 34.02 3.41
2356 2549 0.176680 CCATCTTCAGGGAGACACCG 59.823 60.000 0.00 0.00 40.11 4.94
2372 2565 2.488355 CGCCGTCTCGCCTTTCTA 59.512 61.111 0.00 0.00 0.00 2.10
2379 2572 1.936547 GTCTCGCCTTTCTAAGCATGG 59.063 52.381 0.00 0.00 0.00 3.66
2383 2576 0.099436 GCCTTTCTAAGCATGGCACG 59.901 55.000 0.00 0.00 42.79 5.34
2385 2578 2.292267 CCTTTCTAAGCATGGCACGAT 58.708 47.619 0.00 0.00 0.00 3.73
2393 2586 0.458370 GCATGGCACGATCCCAAAAC 60.458 55.000 0.00 0.00 35.67 2.43
2394 2587 1.176527 CATGGCACGATCCCAAAACT 58.823 50.000 0.00 0.00 35.67 2.66
2395 2588 1.133025 CATGGCACGATCCCAAAACTC 59.867 52.381 0.00 0.00 35.67 3.01
2398 2591 1.611491 GGCACGATCCCAAAACTCAAA 59.389 47.619 0.00 0.00 0.00 2.69
2399 2592 2.351738 GGCACGATCCCAAAACTCAAAG 60.352 50.000 0.00 0.00 0.00 2.77
2401 2594 3.365364 GCACGATCCCAAAACTCAAAGAG 60.365 47.826 0.00 0.00 35.52 2.85
2402 2595 4.065088 CACGATCCCAAAACTCAAAGAGA 58.935 43.478 0.31 0.00 33.32 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 116 4.083324 CCATTGTCTTTGATGTGCTACGTT 60.083 41.667 0.00 0.00 0.00 3.99
121 123 8.755018 GTTAAAGAAACCATTGTCTTTGATGTG 58.245 33.333 8.53 0.00 42.58 3.21
132 134 8.479280 CGTCAAAGATTGTTAAAGAAACCATTG 58.521 33.333 0.00 0.00 37.27 2.82
161 163 3.321111 TGCGTCCTCTCAACTAAAGAAGT 59.679 43.478 0.00 0.00 41.49 3.01
359 362 3.541950 ATGTGGTCTGCTGCGTGCT 62.542 57.895 0.00 0.00 43.37 4.40
591 594 4.250305 ACAAGCGGTGCCGACCTT 62.250 61.111 15.45 6.26 40.58 3.50
739 742 2.257409 ATCTGATGGCGGTGTGGTCC 62.257 60.000 0.00 0.00 0.00 4.46
740 743 1.091771 CATCTGATGGCGGTGTGGTC 61.092 60.000 9.82 0.00 0.00 4.02
741 744 1.078214 CATCTGATGGCGGTGTGGT 60.078 57.895 9.82 0.00 0.00 4.16
742 745 1.820906 CCATCTGATGGCGGTGTGG 60.821 63.158 22.79 0.00 44.70 4.17
743 746 3.817787 CCATCTGATGGCGGTGTG 58.182 61.111 22.79 0.00 44.70 3.82
805 808 1.910580 ATAGTCCAGTGGCCCGGTTG 61.911 60.000 3.51 0.00 0.00 3.77
806 809 1.205460 AATAGTCCAGTGGCCCGGTT 61.205 55.000 3.51 0.00 0.00 4.44
807 810 1.615424 AATAGTCCAGTGGCCCGGT 60.615 57.895 3.51 0.00 0.00 5.28
808 811 1.153168 CAATAGTCCAGTGGCCCGG 60.153 63.158 3.51 0.00 0.00 5.73
809 812 1.153168 CCAATAGTCCAGTGGCCCG 60.153 63.158 3.51 0.00 35.19 6.13
810 813 0.846693 ATCCAATAGTCCAGTGGCCC 59.153 55.000 3.51 0.00 42.36 5.80
811 814 1.771255 AGATCCAATAGTCCAGTGGCC 59.229 52.381 3.51 0.00 42.36 5.36
812 815 3.118261 TCAAGATCCAATAGTCCAGTGGC 60.118 47.826 3.51 0.00 42.36 5.01
813 816 4.760530 TCAAGATCCAATAGTCCAGTGG 57.239 45.455 1.40 1.40 44.07 4.00
814 817 5.922053 TCATCAAGATCCAATAGTCCAGTG 58.078 41.667 0.00 0.00 0.00 3.66
815 818 6.328410 TCATCATCAAGATCCAATAGTCCAGT 59.672 38.462 0.00 0.00 33.72 4.00
816 819 6.766429 TCATCATCAAGATCCAATAGTCCAG 58.234 40.000 0.00 0.00 33.72 3.86
817 820 6.752285 TCATCATCAAGATCCAATAGTCCA 57.248 37.500 0.00 0.00 33.72 4.02
818 821 7.120873 CCATTCATCATCAAGATCCAATAGTCC 59.879 40.741 0.00 0.00 33.72 3.85
819 822 7.881751 TCCATTCATCATCAAGATCCAATAGTC 59.118 37.037 0.00 0.00 33.72 2.59
820 823 7.752638 TCCATTCATCATCAAGATCCAATAGT 58.247 34.615 0.00 0.00 33.72 2.12
821 824 8.809468 ATCCATTCATCATCAAGATCCAATAG 57.191 34.615 0.00 0.00 33.72 1.73
823 826 9.190317 CATATCCATTCATCATCAAGATCCAAT 57.810 33.333 0.00 0.00 33.72 3.16
824 827 8.387813 TCATATCCATTCATCATCAAGATCCAA 58.612 33.333 0.00 0.00 33.72 3.53
825 828 7.924541 TCATATCCATTCATCATCAAGATCCA 58.075 34.615 0.00 0.00 33.72 3.41
826 829 8.982091 ATCATATCCATTCATCATCAAGATCC 57.018 34.615 0.00 0.00 33.72 3.36
828 831 9.755122 ACAATCATATCCATTCATCATCAAGAT 57.245 29.630 0.00 0.00 37.48 2.40
829 832 9.582648 AACAATCATATCCATTCATCATCAAGA 57.417 29.630 0.00 0.00 0.00 3.02
831 834 9.974980 CAAACAATCATATCCATTCATCATCAA 57.025 29.630 0.00 0.00 0.00 2.57
832 835 9.357161 TCAAACAATCATATCCATTCATCATCA 57.643 29.630 0.00 0.00 0.00 3.07
838 841 9.192642 ACAGATTCAAACAATCATATCCATTCA 57.807 29.630 0.00 0.00 0.00 2.57
839 842 9.674824 GACAGATTCAAACAATCATATCCATTC 57.325 33.333 0.00 0.00 0.00 2.67
840 843 8.636213 GGACAGATTCAAACAATCATATCCATT 58.364 33.333 0.00 0.00 30.74 3.16
841 844 8.003044 AGGACAGATTCAAACAATCATATCCAT 58.997 33.333 11.24 0.00 31.80 3.41
842 845 7.348815 AGGACAGATTCAAACAATCATATCCA 58.651 34.615 11.24 0.00 31.80 3.41
843 846 7.814264 AGGACAGATTCAAACAATCATATCC 57.186 36.000 0.00 1.67 0.00 2.59
844 847 9.118300 AGAAGGACAGATTCAAACAATCATATC 57.882 33.333 0.00 0.00 0.00 1.63
845 848 9.471702 AAGAAGGACAGATTCAAACAATCATAT 57.528 29.630 0.00 0.00 0.00 1.78
846 849 8.868522 AAGAAGGACAGATTCAAACAATCATA 57.131 30.769 0.00 0.00 0.00 2.15
847 850 7.771927 AAGAAGGACAGATTCAAACAATCAT 57.228 32.000 0.00 0.00 0.00 2.45
848 851 7.587037 AAAGAAGGACAGATTCAAACAATCA 57.413 32.000 0.00 0.00 0.00 2.57
849 852 7.596621 GGAAAAGAAGGACAGATTCAAACAATC 59.403 37.037 0.00 0.00 0.00 2.67
850 853 7.288621 AGGAAAAGAAGGACAGATTCAAACAAT 59.711 33.333 0.00 0.00 0.00 2.71
851 854 6.607198 AGGAAAAGAAGGACAGATTCAAACAA 59.393 34.615 0.00 0.00 0.00 2.83
852 855 6.129179 AGGAAAAGAAGGACAGATTCAAACA 58.871 36.000 0.00 0.00 0.00 2.83
853 856 6.641169 AGGAAAAGAAGGACAGATTCAAAC 57.359 37.500 0.00 0.00 0.00 2.93
854 857 7.660030 AAAGGAAAAGAAGGACAGATTCAAA 57.340 32.000 0.00 0.00 0.00 2.69
855 858 7.660030 AAAAGGAAAAGAAGGACAGATTCAA 57.340 32.000 0.00 0.00 0.00 2.69
856 859 8.940397 ATAAAAGGAAAAGAAGGACAGATTCA 57.060 30.769 0.00 0.00 0.00 2.57
859 862 9.454859 CACTATAAAAGGAAAAGAAGGACAGAT 57.545 33.333 0.00 0.00 0.00 2.90
860 863 7.883311 CCACTATAAAAGGAAAAGAAGGACAGA 59.117 37.037 0.00 0.00 0.00 3.41
861 864 7.665974 ACCACTATAAAAGGAAAAGAAGGACAG 59.334 37.037 0.00 0.00 0.00 3.51
862 865 7.523415 ACCACTATAAAAGGAAAAGAAGGACA 58.477 34.615 0.00 0.00 0.00 4.02
863 866 7.997773 ACCACTATAAAAGGAAAAGAAGGAC 57.002 36.000 0.00 0.00 0.00 3.85
864 867 8.887393 ACTACCACTATAAAAGGAAAAGAAGGA 58.113 33.333 0.00 0.00 0.00 3.36
888 891 8.808092 GGCAGGATGTTTTATCTACTATCTACT 58.192 37.037 0.00 0.00 39.31 2.57
889 892 8.035984 GGGCAGGATGTTTTATCTACTATCTAC 58.964 40.741 0.00 0.00 39.31 2.59
890 893 7.180408 GGGGCAGGATGTTTTATCTACTATCTA 59.820 40.741 0.00 0.00 39.31 1.98
891 894 6.013293 GGGGCAGGATGTTTTATCTACTATCT 60.013 42.308 0.00 0.00 39.31 1.98
892 895 6.174049 GGGGCAGGATGTTTTATCTACTATC 58.826 44.000 0.00 0.00 39.31 2.08
893 896 5.280011 CGGGGCAGGATGTTTTATCTACTAT 60.280 44.000 0.00 0.00 39.31 2.12
894 897 4.039973 CGGGGCAGGATGTTTTATCTACTA 59.960 45.833 0.00 0.00 39.31 1.82
895 898 3.181454 CGGGGCAGGATGTTTTATCTACT 60.181 47.826 0.00 0.00 39.31 2.57
896 899 3.139077 CGGGGCAGGATGTTTTATCTAC 58.861 50.000 0.00 0.00 39.31 2.59
897 900 2.486548 GCGGGGCAGGATGTTTTATCTA 60.487 50.000 0.00 0.00 39.31 1.98
898 901 1.750682 GCGGGGCAGGATGTTTTATCT 60.751 52.381 0.00 0.00 39.31 1.98
899 902 0.668535 GCGGGGCAGGATGTTTTATC 59.331 55.000 0.00 0.00 39.31 1.75
922 925 3.851098 ACGAAGAGATGGCTTCTTGTAC 58.149 45.455 4.23 0.00 41.60 2.90
927 930 1.134848 GCAGACGAAGAGATGGCTTCT 60.135 52.381 2.05 2.05 41.60 2.85
935 938 2.283529 GGGTGGGCAGACGAAGAGA 61.284 63.158 0.00 0.00 0.00 3.10
942 945 0.827507 ATGTTGTTGGGTGGGCAGAC 60.828 55.000 0.00 0.00 0.00 3.51
1017 1022 0.238289 GCAAGACGGTGTTGTGGATG 59.762 55.000 17.83 0.00 0.00 3.51
1280 1288 2.042831 CGTAGGACGTCCCGGAAGT 61.043 63.158 30.82 13.92 40.87 3.01
1303 1311 4.244802 GCGCTCGTCGGAGGAGAG 62.245 72.222 26.86 24.28 40.80 3.20
1408 1434 2.420642 CTATGCCCATTGATCCGTCAG 58.579 52.381 0.00 0.00 35.39 3.51
1467 1503 1.218047 CGGAGTCAAATCGCCAGGA 59.782 57.895 0.00 0.00 0.00 3.86
1562 1661 4.617959 ACCACGTCCGTCAATAAGATATG 58.382 43.478 0.00 0.00 0.00 1.78
1707 1848 9.474920 ACAACAATCACAAAAATCGTCATATTT 57.525 25.926 0.00 0.00 0.00 1.40
1731 1872 6.559810 CAAGGAATGCAACCGATTAATTACA 58.440 36.000 0.00 0.00 0.00 2.41
1765 1906 6.856895 AGCCAAGACATTAGCAATTCTTTAC 58.143 36.000 0.00 0.00 0.00 2.01
1798 1961 1.635487 ACAGCTAATGACACCCATGGT 59.365 47.619 11.73 0.00 35.24 3.55
1799 1962 2.424601 CAACAGCTAATGACACCCATGG 59.575 50.000 4.14 4.14 35.24 3.66
1800 1963 2.159338 GCAACAGCTAATGACACCCATG 60.159 50.000 2.26 0.00 35.24 3.66
1801 1964 2.094675 GCAACAGCTAATGACACCCAT 58.905 47.619 2.26 0.00 36.99 4.00
1802 1965 1.202867 TGCAACAGCTAATGACACCCA 60.203 47.619 2.26 0.00 0.00 4.51
1803 1966 1.533625 TGCAACAGCTAATGACACCC 58.466 50.000 2.26 0.00 0.00 4.61
1804 1967 3.855689 AATGCAACAGCTAATGACACC 57.144 42.857 0.00 0.00 0.00 4.16
1841 2004 6.287589 ACAGAAAGTTCTTAGTCGATGGAT 57.712 37.500 0.00 0.00 34.74 3.41
1863 2026 3.670203 CGGTGAATCTCGCACATTAAAC 58.330 45.455 0.00 0.00 37.99 2.01
1874 2037 5.050972 CGGAGTTTATAAAGCGGTGAATCTC 60.051 44.000 0.00 0.00 0.00 2.75
1883 2046 5.041287 TGTGATCTCGGAGTTTATAAAGCG 58.959 41.667 4.69 0.00 0.00 4.68
1910 2073 2.079020 CTCGGCCGCGGTTATCCTTA 62.079 60.000 28.70 8.93 0.00 2.69
1921 2084 1.195448 CATTACATTGATCTCGGCCGC 59.805 52.381 23.51 6.96 0.00 6.53
1957 2120 6.184789 AGGCTGGGTTATCTTTATTTTCGAA 58.815 36.000 0.00 0.00 0.00 3.71
1958 2121 5.751586 AGGCTGGGTTATCTTTATTTTCGA 58.248 37.500 0.00 0.00 0.00 3.71
1959 2122 6.451064 AAGGCTGGGTTATCTTTATTTTCG 57.549 37.500 0.00 0.00 0.00 3.46
1960 2123 6.495706 CGAAGGCTGGGTTATCTTTATTTTC 58.504 40.000 0.00 0.00 0.00 2.29
1965 2128 2.237643 TGCGAAGGCTGGGTTATCTTTA 59.762 45.455 0.00 0.00 40.82 1.85
1968 2131 0.839946 ATGCGAAGGCTGGGTTATCT 59.160 50.000 0.00 0.00 40.82 1.98
1975 2138 0.740868 TCTTTCGATGCGAAGGCTGG 60.741 55.000 6.79 0.00 46.43 4.85
1977 2140 1.293924 CATCTTTCGATGCGAAGGCT 58.706 50.000 6.79 0.00 46.43 4.58
1986 2149 1.089920 GGCTGTGTGCATCTTTCGAT 58.910 50.000 0.00 0.00 45.15 3.59
1987 2150 0.250252 TGGCTGTGTGCATCTTTCGA 60.250 50.000 0.00 0.00 45.15 3.71
1988 2151 0.806868 ATGGCTGTGTGCATCTTTCG 59.193 50.000 0.00 0.00 45.15 3.46
1989 2152 3.308438 AAATGGCTGTGTGCATCTTTC 57.692 42.857 0.00 0.00 45.15 2.62
1990 2153 3.756933 AAAATGGCTGTGTGCATCTTT 57.243 38.095 0.00 0.00 45.15 2.52
2079 2244 4.530857 GAGGGGCGATGACGGTGG 62.531 72.222 0.00 0.00 40.15 4.61
2091 2256 2.134933 GGCTCTAACGAGGGAGGGG 61.135 68.421 0.00 0.00 37.75 4.79
2101 2266 2.548480 ACAAGTTTTGCTCGGCTCTAAC 59.452 45.455 0.00 0.00 0.00 2.34
2102 2267 2.846193 ACAAGTTTTGCTCGGCTCTAA 58.154 42.857 0.00 0.00 0.00 2.10
2103 2268 2.543777 ACAAGTTTTGCTCGGCTCTA 57.456 45.000 0.00 0.00 0.00 2.43
2104 2269 1.334869 CAACAAGTTTTGCTCGGCTCT 59.665 47.619 0.00 0.00 0.00 4.09
2111 2276 6.113411 ACTGTCTACTACAACAAGTTTTGCT 58.887 36.000 0.00 0.00 37.74 3.91
2125 2290 4.389992 CGACGACTTACCAACTGTCTACTA 59.610 45.833 0.00 0.00 0.00 1.82
2130 2295 2.049228 CACGACGACTTACCAACTGTC 58.951 52.381 0.00 0.00 0.00 3.51
2132 2297 0.782384 GCACGACGACTTACCAACTG 59.218 55.000 0.00 0.00 0.00 3.16
2139 2304 0.883153 TGCCTTAGCACGACGACTTA 59.117 50.000 0.00 0.00 46.52 2.24
2166 2331 4.870426 CGATTGCTATTCTAGTGTGTTGGT 59.130 41.667 0.00 0.00 0.00 3.67
2170 2335 3.458189 GGCGATTGCTATTCTAGTGTGT 58.542 45.455 4.59 0.00 42.25 3.72
2181 2346 0.249531 TTTATCGGCGGCGATTGCTA 60.250 50.000 44.59 28.15 42.25 3.49
2183 2348 1.082756 CTTTATCGGCGGCGATTGC 60.083 57.895 44.59 0.00 41.71 3.56
2193 2358 3.566523 GATCCACGCTACTCTTTATCGG 58.433 50.000 0.00 0.00 0.00 4.18
2194 2359 3.227147 CGATCCACGCTACTCTTTATCG 58.773 50.000 0.00 0.00 34.51 2.92
2198 2363 1.471119 TCCGATCCACGCTACTCTTT 58.529 50.000 0.00 0.00 41.07 2.52
2216 2381 5.292101 CGTGTGTCTTTAGATTGGATCCTTC 59.708 44.000 14.23 10.08 0.00 3.46
2230 2395 2.132762 GGTCATCGTTCGTGTGTCTTT 58.867 47.619 0.00 0.00 0.00 2.52
2249 2424 1.517832 GTGTCTCCGGTGGATCTGG 59.482 63.158 0.00 0.00 43.70 3.86
2268 2458 1.014564 GTCAGTAGGCGTGTGAAGGC 61.015 60.000 0.00 0.00 0.00 4.35
2272 2462 0.170339 CATCGTCAGTAGGCGTGTGA 59.830 55.000 0.00 0.00 0.00 3.58
2306 2499 0.032615 CACTGCCTAGACCCCTCTCT 60.033 60.000 0.00 0.00 0.00 3.10
2309 2502 0.827368 CTTCACTGCCTAGACCCCTC 59.173 60.000 0.00 0.00 0.00 4.30
2310 2503 0.413832 TCTTCACTGCCTAGACCCCT 59.586 55.000 0.00 0.00 0.00 4.79
2315 2508 5.483937 TGGAATAAAGTCTTCACTGCCTAGA 59.516 40.000 0.00 0.00 31.06 2.43
2325 2518 6.653989 TCCCTGAAGATGGAATAAAGTCTTC 58.346 40.000 6.95 6.95 44.18 2.87
2327 2520 5.966935 TCTCCCTGAAGATGGAATAAAGTCT 59.033 40.000 0.00 0.00 0.00 3.24
2331 2524 5.339200 GGTGTCTCCCTGAAGATGGAATAAA 60.339 44.000 0.00 0.00 0.00 1.40
2366 2559 2.289002 GGATCGTGCCATGCTTAGAAAG 59.711 50.000 0.00 0.00 0.00 2.62
2369 2562 0.106708 GGGATCGTGCCATGCTTAGA 59.893 55.000 0.00 0.00 0.00 2.10
2372 2565 0.611618 TTTGGGATCGTGCCATGCTT 60.612 50.000 0.00 0.00 37.82 3.91
2379 2572 2.552315 TCTTTGAGTTTTGGGATCGTGC 59.448 45.455 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.