Multiple sequence alignment - TraesCS2A01G494900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G494900 chr2A 100.000 2957 0 0 1 2957 726559763 726562719 0.000000e+00 5461.0
1 TraesCS2A01G494900 chr2A 89.960 498 36 8 2466 2957 726571780 726571291 5.380000e-177 630.0
2 TraesCS2A01G494900 chr2A 79.494 712 88 34 1081 1771 726592783 726593457 1.250000e-123 453.0
3 TraesCS2A01G494900 chr2A 94.048 168 10 0 496 663 43139885 43140052 3.780000e-64 255.0
4 TraesCS2A01G494900 chr2A 75.277 271 39 22 107 359 726568024 726568284 1.450000e-18 104.0
5 TraesCS2A01G494900 chr2D 84.080 1451 88 57 686 2043 592030773 592032173 0.000000e+00 1267.0
6 TraesCS2A01G494900 chr2D 80.676 740 80 31 1081 1775 592092264 592092985 1.570000e-142 516.0
7 TraesCS2A01G494900 chr2D 89.512 410 33 4 2551 2957 592036337 592035935 7.310000e-141 510.0
8 TraesCS2A01G494900 chr2D 84.630 527 47 21 1068 1585 592115493 592115994 7.360000e-136 494.0
9 TraesCS2A01G494900 chr2D 83.779 524 47 18 1081 1589 592080444 592080944 2.080000e-126 462.0
10 TraesCS2A01G494900 chr2D 86.786 280 29 6 2193 2470 592037825 592037552 3.700000e-79 305.0
11 TraesCS2A01G494900 chr2D 92.771 166 12 0 498 663 623354686 623354521 1.060000e-59 241.0
12 TraesCS2A01G494900 chr2D 78.797 349 40 14 107 430 592030284 592030623 1.390000e-48 204.0
13 TraesCS2A01G494900 chr2B 88.409 1018 58 23 867 1840 717678446 717679447 0.000000e+00 1171.0
14 TraesCS2A01G494900 chr2B 90.367 436 35 3 2522 2957 717682813 717682385 1.540000e-157 566.0
15 TraesCS2A01G494900 chr2B 83.977 518 51 15 1081 1585 717775799 717776297 4.460000e-128 468.0
16 TraesCS2A01G494900 chr2B 85.014 367 36 12 1190 1555 717693930 717694278 3.620000e-94 355.0
17 TraesCS2A01G494900 chr2B 82.036 334 33 15 87 396 717676904 717677234 2.920000e-65 259.0
18 TraesCS2A01G494900 chr2B 86.111 144 8 2 1911 2043 717679466 717679608 8.540000e-31 145.0
19 TraesCS2A01G494900 chr2B 86.916 107 13 1 2039 2144 46234619 46234513 5.180000e-23 119.0
20 TraesCS2A01G494900 chr5D 93.452 168 10 1 500 666 9947613 9947780 6.330000e-62 248.0
21 TraesCS2A01G494900 chr4A 93.333 165 11 0 499 663 625819062 625818898 8.190000e-61 244.0
22 TraesCS2A01G494900 chr4A 87.778 90 10 1 2055 2144 732007027 732006939 1.450000e-18 104.0
23 TraesCS2A01G494900 chr7D 92.857 168 11 1 496 663 327375413 327375579 2.940000e-60 243.0
24 TraesCS2A01G494900 chr6A 93.293 164 11 0 500 663 604587857 604588020 2.940000e-60 243.0
25 TraesCS2A01G494900 chr4D 93.293 164 11 0 500 663 391158410 391158573 2.940000e-60 243.0
26 TraesCS2A01G494900 chr5A 92.308 169 13 0 497 665 506546683 506546515 1.060000e-59 241.0
27 TraesCS2A01G494900 chr5A 83.810 105 12 3 2040 2144 381758713 381758812 8.730000e-16 95.3
28 TraesCS2A01G494900 chr1A 92.308 169 12 1 495 663 592833806 592833973 3.810000e-59 239.0
29 TraesCS2A01G494900 chrUn 87.143 210 20 5 1193 1401 317867820 317868023 6.370000e-57 231.0
30 TraesCS2A01G494900 chrUn 85.149 101 13 2 2044 2144 102553555 102553653 5.210000e-18 102.0
31 TraesCS2A01G494900 chr1D 89.888 89 7 2 2056 2144 8930465 8930379 2.410000e-21 113.0
32 TraesCS2A01G494900 chr7A 87.778 90 11 0 2054 2143 193587695 193587606 4.030000e-19 106.0
33 TraesCS2A01G494900 chr3A 86.667 90 12 0 2055 2144 646297297 646297208 1.880000e-17 100.0
34 TraesCS2A01G494900 chr3A 84.466 103 13 2 2056 2158 527944618 527944717 6.740000e-17 99.0
35 TraesCS2A01G494900 chr6D 84.158 101 12 4 2045 2144 469796490 469796393 8.730000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G494900 chr2A 726559763 726562719 2956 False 5461.0 5461 100.000000 1 2957 1 chr2A.!!$F2 2956
1 TraesCS2A01G494900 chr2A 726592783 726593457 674 False 453.0 453 79.494000 1081 1771 1 chr2A.!!$F4 690
2 TraesCS2A01G494900 chr2D 592030284 592032173 1889 False 735.5 1267 81.438500 107 2043 2 chr2D.!!$F4 1936
3 TraesCS2A01G494900 chr2D 592092264 592092985 721 False 516.0 516 80.676000 1081 1775 1 chr2D.!!$F2 694
4 TraesCS2A01G494900 chr2D 592115493 592115994 501 False 494.0 494 84.630000 1068 1585 1 chr2D.!!$F3 517
5 TraesCS2A01G494900 chr2D 592080444 592080944 500 False 462.0 462 83.779000 1081 1589 1 chr2D.!!$F1 508
6 TraesCS2A01G494900 chr2D 592035935 592037825 1890 True 407.5 510 88.149000 2193 2957 2 chr2D.!!$R2 764
7 TraesCS2A01G494900 chr2B 717676904 717679608 2704 False 525.0 1171 85.518667 87 2043 3 chr2B.!!$F3 1956

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 882 0.094046 GGCGTACGTGCATGTAACAC 59.906 55.0 20.12 10.12 36.28 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2087 3220 0.030638 AAAGTGGTTGCACGCATCAC 59.969 50.0 14.36 14.36 33.68 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.601443 AATCAACTCTTACGAGCAGCT 57.399 42.857 0.00 0.00 41.09 4.24
26 27 2.159366 TCAACTCTTACGAGCAGCTAGC 60.159 50.000 6.62 6.62 41.09 3.42
72 73 7.769272 TTTTGAAAGGATAGCACAAAAGTTG 57.231 32.000 0.00 0.00 36.16 3.16
73 74 6.707440 TTGAAAGGATAGCACAAAAGTTGA 57.293 33.333 0.00 0.00 0.00 3.18
74 75 6.072112 TGAAAGGATAGCACAAAAGTTGAC 57.928 37.500 0.00 0.00 0.00 3.18
75 76 4.749245 AAGGATAGCACAAAAGTTGACG 57.251 40.909 0.00 0.00 0.00 4.35
76 77 3.074412 AGGATAGCACAAAAGTTGACGG 58.926 45.455 0.00 0.00 0.00 4.79
77 78 2.161609 GGATAGCACAAAAGTTGACGGG 59.838 50.000 0.00 0.00 0.00 5.28
78 79 0.948678 TAGCACAAAAGTTGACGGGC 59.051 50.000 0.00 0.00 0.00 6.13
79 80 1.657181 GCACAAAAGTTGACGGGCG 60.657 57.895 0.00 0.00 0.00 6.13
80 81 1.657181 CACAAAAGTTGACGGGCGC 60.657 57.895 0.00 0.00 0.00 6.53
81 82 2.115911 ACAAAAGTTGACGGGCGCA 61.116 52.632 10.83 0.00 0.00 6.09
82 83 1.285641 CAAAAGTTGACGGGCGCAT 59.714 52.632 10.83 0.00 0.00 4.73
83 84 1.003262 CAAAAGTTGACGGGCGCATG 61.003 55.000 10.83 2.43 0.00 4.06
84 85 2.747507 AAAAGTTGACGGGCGCATGC 62.748 55.000 10.83 7.91 41.71 4.06
86 87 4.759096 GTTGACGGGCGCATGCAC 62.759 66.667 19.57 8.05 45.35 4.57
92 93 3.221389 GGGCGCATGCACATCCAT 61.221 61.111 19.57 0.00 46.60 3.41
93 94 1.898094 GGGCGCATGCACATCCATA 60.898 57.895 19.57 0.00 46.60 2.74
94 95 1.246056 GGGCGCATGCACATCCATAT 61.246 55.000 19.57 0.00 46.60 1.78
95 96 1.452110 GGCGCATGCACATCCATATA 58.548 50.000 19.57 0.00 45.35 0.86
96 97 1.399440 GGCGCATGCACATCCATATAG 59.601 52.381 19.57 0.00 45.35 1.31
97 98 1.202110 GCGCATGCACATCCATATAGC 60.202 52.381 19.57 4.19 42.15 2.97
98 99 1.061566 CGCATGCACATCCATATAGCG 59.938 52.381 19.57 0.00 31.83 4.26
99 100 1.202110 GCATGCACATCCATATAGCGC 60.202 52.381 14.21 0.00 0.00 5.92
100 101 2.353323 CATGCACATCCATATAGCGCT 58.647 47.619 17.26 17.26 0.00 5.92
101 102 1.799544 TGCACATCCATATAGCGCTG 58.200 50.000 22.90 3.25 0.00 5.18
102 103 1.344114 TGCACATCCATATAGCGCTGA 59.656 47.619 22.90 8.77 0.00 4.26
103 104 1.998315 GCACATCCATATAGCGCTGAG 59.002 52.381 22.90 6.71 0.00 3.35
198 199 3.124921 CGGCGCCAAAATCCGACT 61.125 61.111 28.98 0.00 45.53 4.18
199 200 2.485122 GGCGCCAAAATCCGACTG 59.515 61.111 24.80 0.00 0.00 3.51
200 201 2.038269 GGCGCCAAAATCCGACTGA 61.038 57.895 24.80 0.00 0.00 3.41
201 202 1.425428 GCGCCAAAATCCGACTGAG 59.575 57.895 0.00 0.00 0.00 3.35
202 203 1.019278 GCGCCAAAATCCGACTGAGA 61.019 55.000 0.00 0.00 0.00 3.27
203 204 1.656652 CGCCAAAATCCGACTGAGAT 58.343 50.000 0.00 0.00 0.00 2.75
204 205 2.821546 CGCCAAAATCCGACTGAGATA 58.178 47.619 0.00 0.00 0.00 1.98
205 206 3.393800 CGCCAAAATCCGACTGAGATAT 58.606 45.455 0.00 0.00 0.00 1.63
206 207 3.430218 CGCCAAAATCCGACTGAGATATC 59.570 47.826 0.00 0.00 0.00 1.63
207 208 3.430218 GCCAAAATCCGACTGAGATATCG 59.570 47.826 0.00 0.00 38.08 2.92
208 209 4.621991 CCAAAATCCGACTGAGATATCGT 58.378 43.478 0.00 0.00 36.60 3.73
209 210 4.681942 CCAAAATCCGACTGAGATATCGTC 59.318 45.833 0.00 0.00 36.60 4.20
212 213 0.882474 CCGACTGAGATATCGTCCCC 59.118 60.000 0.00 0.00 36.60 4.81
217 218 0.114560 TGAGATATCGTCCCCTCCCC 59.885 60.000 0.00 0.00 0.00 4.81
254 268 0.745486 CACATGCTGCTGGGATCGAA 60.745 55.000 0.00 0.00 0.00 3.71
328 359 3.056465 GTGACCAGACGATTCTCTTCCTT 60.056 47.826 0.00 0.00 0.00 3.36
333 364 4.629200 CCAGACGATTCTCTTCCTTTCTTG 59.371 45.833 0.00 0.00 0.00 3.02
353 384 2.429930 CTCTCCCCAACCACGCAA 59.570 61.111 0.00 0.00 0.00 4.85
385 416 0.166597 CGTGACCATGTGCATGTGAC 59.833 55.000 10.76 4.15 37.11 3.67
388 419 1.304381 ACCATGTGCATGTGACCCC 60.304 57.895 10.76 0.00 37.11 4.95
396 427 2.104253 CATGTGACCCCGCGTAACC 61.104 63.158 4.92 0.00 0.00 2.85
398 429 3.698820 GTGACCCCGCGTAACCCT 61.699 66.667 4.92 0.00 0.00 4.34
404 435 2.262292 CCGCGTAACCCTCGGAAA 59.738 61.111 4.92 0.00 45.53 3.13
405 436 1.374505 CCGCGTAACCCTCGGAAAA 60.375 57.895 4.92 0.00 45.53 2.29
406 437 1.629345 CCGCGTAACCCTCGGAAAAC 61.629 60.000 4.92 0.00 45.53 2.43
408 439 0.794473 GCGTAACCCTCGGAAAACTG 59.206 55.000 0.00 0.00 0.00 3.16
409 440 1.875157 GCGTAACCCTCGGAAAACTGT 60.875 52.381 0.00 0.00 0.00 3.55
422 458 0.661020 AAACTGTTACGGTGCAGCAC 59.339 50.000 17.97 17.97 36.26 4.40
435 471 3.423848 CAGCACTGCGTGTCATCTA 57.576 52.632 9.76 0.00 35.75 1.98
436 472 0.994995 CAGCACTGCGTGTCATCTAC 59.005 55.000 9.76 0.00 35.75 2.59
437 473 0.891373 AGCACTGCGTGTCATCTACT 59.109 50.000 9.76 0.00 35.75 2.57
438 474 2.092323 AGCACTGCGTGTCATCTACTA 58.908 47.619 9.76 0.00 35.75 1.82
439 475 2.690497 AGCACTGCGTGTCATCTACTAT 59.310 45.455 9.76 0.00 35.75 2.12
440 476 3.131223 AGCACTGCGTGTCATCTACTATT 59.869 43.478 9.76 0.00 35.75 1.73
441 477 3.865745 GCACTGCGTGTCATCTACTATTT 59.134 43.478 9.76 0.00 35.75 1.40
442 478 4.330074 GCACTGCGTGTCATCTACTATTTT 59.670 41.667 9.76 0.00 35.75 1.82
443 479 5.725042 GCACTGCGTGTCATCTACTATTTTG 60.725 44.000 9.76 0.00 35.75 2.44
444 480 4.870426 ACTGCGTGTCATCTACTATTTTGG 59.130 41.667 0.00 0.00 0.00 3.28
445 481 5.079689 TGCGTGTCATCTACTATTTTGGA 57.920 39.130 0.00 0.00 0.00 3.53
446 482 5.483811 TGCGTGTCATCTACTATTTTGGAA 58.516 37.500 0.00 0.00 0.00 3.53
447 483 5.350365 TGCGTGTCATCTACTATTTTGGAAC 59.650 40.000 0.00 0.00 0.00 3.62
448 484 5.500290 GCGTGTCATCTACTATTTTGGAACG 60.500 44.000 0.00 0.00 0.00 3.95
449 485 5.005394 CGTGTCATCTACTATTTTGGAACGG 59.995 44.000 0.00 0.00 0.00 4.44
450 486 6.103997 GTGTCATCTACTATTTTGGAACGGA 58.896 40.000 0.00 0.00 0.00 4.69
451 487 6.255887 GTGTCATCTACTATTTTGGAACGGAG 59.744 42.308 0.00 0.00 0.00 4.63
452 488 5.753921 GTCATCTACTATTTTGGAACGGAGG 59.246 44.000 0.00 0.00 0.00 4.30
453 489 5.659525 TCATCTACTATTTTGGAACGGAGGA 59.340 40.000 0.00 0.00 0.00 3.71
454 490 6.155565 TCATCTACTATTTTGGAACGGAGGAA 59.844 38.462 0.00 0.00 0.00 3.36
455 491 6.555463 TCTACTATTTTGGAACGGAGGAAT 57.445 37.500 0.00 0.00 0.00 3.01
460 496 5.835113 ATTTTGGAACGGAGGAATACATG 57.165 39.130 0.00 0.00 0.00 3.21
462 498 1.837439 TGGAACGGAGGAATACATGCT 59.163 47.619 0.00 0.00 0.00 3.79
464 500 3.279434 GGAACGGAGGAATACATGCTTT 58.721 45.455 0.00 0.00 0.00 3.51
466 502 4.438744 GGAACGGAGGAATACATGCTTTTG 60.439 45.833 0.00 0.00 0.00 2.44
468 504 3.689649 ACGGAGGAATACATGCTTTTGTC 59.310 43.478 0.00 0.00 0.00 3.18
469 505 3.941483 CGGAGGAATACATGCTTTTGTCT 59.059 43.478 0.00 0.00 0.00 3.41
471 507 5.644644 GGAGGAATACATGCTTTTGTCTTG 58.355 41.667 0.00 0.00 0.00 3.02
488 524 9.959721 TTTTGTCTTGTAATAATTCTAGAGCCT 57.040 29.630 0.00 0.00 0.00 4.58
490 526 9.959721 TTGTCTTGTAATAATTCTAGAGCCTTT 57.040 29.630 0.00 0.00 0.00 3.11
491 527 9.959721 TGTCTTGTAATAATTCTAGAGCCTTTT 57.040 29.630 0.00 0.00 0.00 2.27
503 539 9.878667 ATTCTAGAGCCTTTTCTTTTAGTACTC 57.121 33.333 0.00 0.00 0.00 2.59
504 540 7.838884 TCTAGAGCCTTTTCTTTTAGTACTCC 58.161 38.462 0.00 0.00 0.00 3.85
505 541 6.435292 AGAGCCTTTTCTTTTAGTACTCCA 57.565 37.500 0.00 0.00 0.00 3.86
506 542 7.021998 AGAGCCTTTTCTTTTAGTACTCCAT 57.978 36.000 0.00 0.00 0.00 3.41
507 543 7.106890 AGAGCCTTTTCTTTTAGTACTCCATC 58.893 38.462 0.00 0.00 0.00 3.51
508 544 7.021998 AGCCTTTTCTTTTAGTACTCCATCT 57.978 36.000 0.00 0.00 0.00 2.90
509 545 8.147244 AGCCTTTTCTTTTAGTACTCCATCTA 57.853 34.615 0.00 0.00 0.00 1.98
510 546 8.773216 AGCCTTTTCTTTTAGTACTCCATCTAT 58.227 33.333 0.00 0.00 0.00 1.98
511 547 9.397280 GCCTTTTCTTTTAGTACTCCATCTATT 57.603 33.333 0.00 0.00 0.00 1.73
542 578 9.774742 AATATTTGTCTTTCTAGCGATTTCAAC 57.225 29.630 0.00 0.00 0.00 3.18
543 579 6.612247 TTTGTCTTTCTAGCGATTTCAACA 57.388 33.333 0.00 0.00 0.00 3.33
544 580 6.612247 TTGTCTTTCTAGCGATTTCAACAA 57.388 33.333 0.00 0.00 0.00 2.83
545 581 6.612247 TGTCTTTCTAGCGATTTCAACAAA 57.388 33.333 0.00 0.00 0.00 2.83
546 582 7.202016 TGTCTTTCTAGCGATTTCAACAAAT 57.798 32.000 0.00 0.00 34.70 2.32
547 583 7.077605 TGTCTTTCTAGCGATTTCAACAAATG 58.922 34.615 0.00 0.00 31.94 2.32
548 584 7.041440 TGTCTTTCTAGCGATTTCAACAAATGA 60.041 33.333 0.00 0.00 31.94 2.57
549 585 7.269297 GTCTTTCTAGCGATTTCAACAAATGAC 59.731 37.037 0.00 0.00 37.92 3.06
550 586 6.801539 TTCTAGCGATTTCAACAAATGACT 57.198 33.333 0.00 0.00 37.92 3.41
551 587 7.899178 TTCTAGCGATTTCAACAAATGACTA 57.101 32.000 0.00 0.00 37.92 2.59
552 588 7.290857 TCTAGCGATTTCAACAAATGACTAC 57.709 36.000 0.00 0.00 37.92 2.73
553 589 5.940192 AGCGATTTCAACAAATGACTACA 57.060 34.783 0.00 0.00 37.92 2.74
554 590 6.500684 AGCGATTTCAACAAATGACTACAT 57.499 33.333 0.00 0.00 37.92 2.29
555 591 7.609760 AGCGATTTCAACAAATGACTACATA 57.390 32.000 0.00 0.00 37.92 2.29
556 592 7.464358 AGCGATTTCAACAAATGACTACATAC 58.536 34.615 0.00 0.00 37.92 2.39
557 593 7.119116 AGCGATTTCAACAAATGACTACATACA 59.881 33.333 0.00 0.00 37.92 2.29
558 594 7.748683 GCGATTTCAACAAATGACTACATACAA 59.251 33.333 0.00 0.00 37.92 2.41
559 595 9.605955 CGATTTCAACAAATGACTACATACAAA 57.394 29.630 0.00 0.00 37.92 2.83
561 597 8.795786 TTTCAACAAATGACTACATACAAAGC 57.204 30.769 0.00 0.00 37.92 3.51
562 598 7.503521 TCAACAAATGACTACATACAAAGCA 57.496 32.000 0.00 0.00 35.50 3.91
563 599 7.935520 TCAACAAATGACTACATACAAAGCAA 58.064 30.769 0.00 0.00 35.50 3.91
564 600 8.409371 TCAACAAATGACTACATACAAAGCAAA 58.591 29.630 0.00 0.00 35.50 3.68
565 601 9.029243 CAACAAATGACTACATACAAAGCAAAA 57.971 29.630 0.00 0.00 35.50 2.44
566 602 9.762933 AACAAATGACTACATACAAAGCAAAAT 57.237 25.926 0.00 0.00 35.50 1.82
580 616 8.587952 ACAAAGCAAAATAAATGAACCTACAC 57.412 30.769 0.00 0.00 0.00 2.90
581 617 8.421002 ACAAAGCAAAATAAATGAACCTACACT 58.579 29.630 0.00 0.00 0.00 3.55
582 618 8.915654 CAAAGCAAAATAAATGAACCTACACTC 58.084 33.333 0.00 0.00 0.00 3.51
583 619 8.409358 AAGCAAAATAAATGAACCTACACTCT 57.591 30.769 0.00 0.00 0.00 3.24
584 620 9.515226 AAGCAAAATAAATGAACCTACACTCTA 57.485 29.630 0.00 0.00 0.00 2.43
585 621 9.515226 AGCAAAATAAATGAACCTACACTCTAA 57.485 29.630 0.00 0.00 0.00 2.10
620 656 7.490962 CATACATCCGTATGTTGTAACCATT 57.509 36.000 0.00 0.00 46.70 3.16
621 657 7.925993 CATACATCCGTATGTTGTAACCATTT 58.074 34.615 0.00 0.00 46.70 2.32
622 658 6.189677 ACATCCGTATGTTGTAACCATTTG 57.810 37.500 0.00 0.00 44.07 2.32
623 659 5.941058 ACATCCGTATGTTGTAACCATTTGA 59.059 36.000 0.00 0.00 44.07 2.69
624 660 6.431543 ACATCCGTATGTTGTAACCATTTGAA 59.568 34.615 0.00 0.00 44.07 2.69
625 661 6.879276 TCCGTATGTTGTAACCATTTGAAA 57.121 33.333 0.00 0.00 0.00 2.69
626 662 7.455641 TCCGTATGTTGTAACCATTTGAAAT 57.544 32.000 0.00 0.00 0.00 2.17
627 663 7.309177 TCCGTATGTTGTAACCATTTGAAATG 58.691 34.615 10.84 10.84 0.00 2.32
628 664 7.040340 TCCGTATGTTGTAACCATTTGAAATGT 60.040 33.333 15.93 2.12 0.00 2.71
629 665 7.061673 CCGTATGTTGTAACCATTTGAAATGTG 59.938 37.037 15.93 10.16 0.00 3.21
630 666 7.593273 CGTATGTTGTAACCATTTGAAATGTGT 59.407 33.333 15.93 10.72 0.00 3.72
631 667 9.900710 GTATGTTGTAACCATTTGAAATGTGTA 57.099 29.630 15.93 5.61 0.00 2.90
633 669 8.226819 TGTTGTAACCATTTGAAATGTGTAGA 57.773 30.769 15.93 4.46 0.00 2.59
634 670 8.687242 TGTTGTAACCATTTGAAATGTGTAGAA 58.313 29.630 15.93 9.47 0.00 2.10
635 671 9.522804 GTTGTAACCATTTGAAATGTGTAGAAA 57.477 29.630 15.93 6.79 0.00 2.52
636 672 9.743057 TTGTAACCATTTGAAATGTGTAGAAAG 57.257 29.630 15.93 1.80 0.00 2.62
637 673 9.126151 TGTAACCATTTGAAATGTGTAGAAAGA 57.874 29.630 15.93 0.00 0.00 2.52
638 674 9.394477 GTAACCATTTGAAATGTGTAGAAAGAC 57.606 33.333 15.93 4.19 0.00 3.01
639 675 7.581213 ACCATTTGAAATGTGTAGAAAGACA 57.419 32.000 15.93 0.00 32.75 3.41
640 676 8.006298 ACCATTTGAAATGTGTAGAAAGACAA 57.994 30.769 15.93 0.00 31.84 3.18
641 677 8.474025 ACCATTTGAAATGTGTAGAAAGACAAA 58.526 29.630 15.93 0.00 31.84 2.83
642 678 9.480053 CCATTTGAAATGTGTAGAAAGACAAAT 57.520 29.630 15.93 0.00 36.38 2.32
653 689 9.968743 GTGTAGAAAGACAAATATTTAGGAACG 57.031 33.333 0.00 0.00 0.00 3.95
654 690 9.158233 TGTAGAAAGACAAATATTTAGGAACGG 57.842 33.333 0.00 0.00 0.00 4.44
655 691 9.374838 GTAGAAAGACAAATATTTAGGAACGGA 57.625 33.333 0.00 0.00 0.00 4.69
656 692 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
657 693 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
658 694 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
659 695 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
660 696 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
663 699 7.092757 ACAAATATTTAGGAACGGAGGGAGTAA 60.093 37.037 0.00 0.00 0.00 2.24
752 882 0.094046 GGCGTACGTGCATGTAACAC 59.906 55.000 20.12 10.12 36.28 3.32
763 907 1.330521 CATGTAACACGGCCATACAGC 59.669 52.381 2.24 0.00 33.44 4.40
780 924 2.364324 ACAGCTTCGTCAGGACAAGTTA 59.636 45.455 0.00 0.00 0.00 2.24
790 934 5.060569 CGTCAGGACAAGTTATTGACTAACG 59.939 44.000 0.00 0.00 43.78 3.18
797 941 8.408601 GGACAAGTTATTGACTAACGTAGGATA 58.591 37.037 0.00 0.00 43.78 2.59
802 946 9.578439 AGTTATTGACTAACGTAGGATAAACAC 57.422 33.333 0.00 0.00 43.78 3.32
810 954 0.834612 TAGGATAAACACCCGCCTGG 59.165 55.000 0.00 0.00 41.37 4.45
820 1817 2.192979 CCGCCTGGCATATGTGGT 59.807 61.111 20.29 0.00 0.00 4.16
824 1821 0.740737 GCCTGGCATATGTGGTTCAC 59.259 55.000 15.17 0.00 34.56 3.18
840 1837 3.921119 TTCACAATGTGAATGACAGCC 57.079 42.857 23.28 0.00 45.88 4.85
843 1855 4.587891 TCACAATGTGAATGACAGCCATA 58.412 39.130 14.37 0.00 39.78 2.74
844 1856 5.195185 TCACAATGTGAATGACAGCCATAT 58.805 37.500 14.37 0.00 39.78 1.78
845 1857 6.355747 TCACAATGTGAATGACAGCCATATA 58.644 36.000 14.37 0.00 39.78 0.86
846 1858 6.484308 TCACAATGTGAATGACAGCCATATAG 59.516 38.462 14.37 0.00 39.78 1.31
847 1859 5.766670 ACAATGTGAATGACAGCCATATAGG 59.233 40.000 0.00 0.00 38.23 2.57
848 1860 4.356405 TGTGAATGACAGCCATATAGGG 57.644 45.455 0.00 0.00 38.09 3.53
849 1861 3.973305 TGTGAATGACAGCCATATAGGGA 59.027 43.478 7.83 0.00 38.09 4.20
850 1862 4.411869 TGTGAATGACAGCCATATAGGGAA 59.588 41.667 7.83 0.00 38.09 3.97
851 1863 4.757149 GTGAATGACAGCCATATAGGGAAC 59.243 45.833 7.83 0.00 38.09 3.62
852 1864 4.411869 TGAATGACAGCCATATAGGGAACA 59.588 41.667 7.83 1.50 38.09 3.18
853 1865 3.838244 TGACAGCCATATAGGGAACAC 57.162 47.619 7.83 0.00 38.09 3.32
854 1866 3.111484 TGACAGCCATATAGGGAACACA 58.889 45.455 7.83 0.00 38.09 3.72
855 1867 3.134623 TGACAGCCATATAGGGAACACAG 59.865 47.826 7.83 0.00 38.09 3.66
856 1868 3.115390 ACAGCCATATAGGGAACACAGT 58.885 45.455 7.83 0.00 38.09 3.55
857 1869 4.295201 ACAGCCATATAGGGAACACAGTA 58.705 43.478 7.83 0.00 38.09 2.74
858 1870 4.719773 ACAGCCATATAGGGAACACAGTAA 59.280 41.667 7.83 0.00 38.09 2.24
859 1871 5.190925 ACAGCCATATAGGGAACACAGTAAA 59.809 40.000 7.83 0.00 38.09 2.01
860 1872 6.126478 ACAGCCATATAGGGAACACAGTAAAT 60.126 38.462 7.83 0.00 38.09 1.40
861 1873 6.205464 CAGCCATATAGGGAACACAGTAAATG 59.795 42.308 7.83 0.00 38.09 2.32
862 1874 6.062095 GCCATATAGGGAACACAGTAAATGT 58.938 40.000 7.83 0.00 39.70 2.71
863 1875 6.546034 GCCATATAGGGAACACAGTAAATGTT 59.454 38.462 7.83 0.00 39.44 2.71
864 1876 7.717875 GCCATATAGGGAACACAGTAAATGTTA 59.282 37.037 7.83 0.00 37.93 2.41
865 1877 9.052759 CCATATAGGGAACACAGTAAATGTTAC 57.947 37.037 0.00 0.00 41.41 2.50
866 1878 9.607988 CATATAGGGAACACAGTAAATGTTACA 57.392 33.333 2.73 0.00 41.89 2.41
923 1935 5.708544 TCAGATTATTTGATCCAGGCCAAT 58.291 37.500 5.01 0.00 0.00 3.16
950 1962 0.547075 TGACGAACCCAAGTCCCAAA 59.453 50.000 0.00 0.00 36.61 3.28
971 2014 8.212995 CCCAAAATTTCCAGCATCCTATAAAAT 58.787 33.333 0.00 0.00 0.00 1.82
982 2025 4.311208 TCCTATAAAATCTCCCACCCCT 57.689 45.455 0.00 0.00 0.00 4.79
1012 2059 0.969409 GAAGCCAGCCAGCTCCATTT 60.969 55.000 0.00 0.00 44.11 2.32
1021 2068 2.242043 CCAGCTCCATTTCACCAACTT 58.758 47.619 0.00 0.00 0.00 2.66
1033 2080 0.765510 ACCAACTTGTCCTCCTCCAC 59.234 55.000 0.00 0.00 0.00 4.02
1034 2081 0.036875 CCAACTTGTCCTCCTCCACC 59.963 60.000 0.00 0.00 0.00 4.61
1035 2082 0.320771 CAACTTGTCCTCCTCCACCG 60.321 60.000 0.00 0.00 0.00 4.94
1076 2129 1.303155 GCAGGCCAACAGAAGCTCT 60.303 57.895 5.01 0.00 0.00 4.09
1526 2594 0.249489 GGTGACGGATCGATGGAAGG 60.249 60.000 0.54 0.00 0.00 3.46
1563 2634 1.334992 CGGTGTACGTGCTCTGTTCG 61.335 60.000 4.97 0.00 37.93 3.95
1694 2809 0.526662 CCCGAGGCCGTATATCTGAC 59.473 60.000 0.00 0.00 0.00 3.51
1723 2845 4.091939 GTCCGGTGGTAGTGGCCC 62.092 72.222 0.00 0.00 0.00 5.80
1782 2904 4.357279 AGCAACTGAGGCAGGCCC 62.357 66.667 6.70 0.00 35.51 5.80
1810 2932 2.046285 GGGCGTGTGGCTAGCAAAT 61.046 57.895 18.24 0.00 42.94 2.32
1811 2933 1.429423 GGCGTGTGGCTAGCAAATC 59.571 57.895 18.24 0.00 42.94 2.17
1812 2934 1.026718 GGCGTGTGGCTAGCAAATCT 61.027 55.000 18.24 0.00 42.94 2.40
1813 2935 1.651987 GCGTGTGGCTAGCAAATCTA 58.348 50.000 18.24 0.00 39.11 1.98
1814 2936 1.327764 GCGTGTGGCTAGCAAATCTAC 59.672 52.381 18.24 5.87 39.11 2.59
1815 2937 2.893637 CGTGTGGCTAGCAAATCTACT 58.106 47.619 18.24 0.00 0.00 2.57
1816 2938 2.860735 CGTGTGGCTAGCAAATCTACTC 59.139 50.000 18.24 5.49 0.00 2.59
1840 2962 1.051812 ACCAGCTCTGTACTGCTTGT 58.948 50.000 6.00 6.47 37.44 3.16
1841 2963 2.248248 ACCAGCTCTGTACTGCTTGTA 58.752 47.619 9.66 0.00 37.44 2.41
1851 2973 2.620251 ACTGCTTGTACTGCTTGACA 57.380 45.000 11.48 0.00 0.00 3.58
1879 3001 8.999431 TGGTCAGAAGAAACTTGTAATGATTAC 58.001 33.333 8.35 8.35 36.67 1.89
1942 3064 3.073274 ACACTCCTTGCTGGGAATAAC 57.927 47.619 0.42 0.00 34.66 1.89
1998 3131 0.553862 TGGGGAGGGGAAATGGCTAA 60.554 55.000 0.00 0.00 0.00 3.09
2080 3213 2.050918 AGGAATACCCTTAGCCTCTGC 58.949 52.381 0.00 0.00 44.85 4.26
2081 3214 1.768870 GGAATACCCTTAGCCTCTGCA 59.231 52.381 0.00 0.00 41.13 4.41
2082 3215 2.373502 GGAATACCCTTAGCCTCTGCAT 59.626 50.000 0.00 0.00 41.13 3.96
2083 3216 3.181439 GGAATACCCTTAGCCTCTGCATT 60.181 47.826 0.00 0.00 41.13 3.56
2084 3217 4.464947 GAATACCCTTAGCCTCTGCATTT 58.535 43.478 0.00 0.00 41.13 2.32
2085 3218 2.134789 ACCCTTAGCCTCTGCATTTG 57.865 50.000 0.00 0.00 41.13 2.32
2086 3219 1.341383 ACCCTTAGCCTCTGCATTTGG 60.341 52.381 0.00 0.00 41.13 3.28
2087 3220 1.396653 CCTTAGCCTCTGCATTTGGG 58.603 55.000 0.00 0.00 41.13 4.12
2088 3221 1.341383 CCTTAGCCTCTGCATTTGGGT 60.341 52.381 8.98 8.98 41.13 4.51
2089 3222 1.747355 CTTAGCCTCTGCATTTGGGTG 59.253 52.381 12.68 0.00 41.13 4.61
2090 3223 0.991146 TAGCCTCTGCATTTGGGTGA 59.009 50.000 12.68 0.00 41.13 4.02
2091 3224 0.333993 AGCCTCTGCATTTGGGTGAT 59.666 50.000 4.10 0.00 41.13 3.06
2092 3225 0.458669 GCCTCTGCATTTGGGTGATG 59.541 55.000 0.00 0.00 37.47 3.07
2096 3229 4.481870 GCATTTGGGTGATGCGTG 57.518 55.556 0.00 0.00 40.30 5.34
2097 3230 1.806758 GCATTTGGGTGATGCGTGC 60.807 57.895 0.00 0.00 40.30 5.34
2098 3231 1.585517 CATTTGGGTGATGCGTGCA 59.414 52.632 0.00 0.00 0.00 4.57
2099 3232 0.038435 CATTTGGGTGATGCGTGCAA 60.038 50.000 0.00 0.00 0.00 4.08
2100 3233 0.038343 ATTTGGGTGATGCGTGCAAC 60.038 50.000 0.00 0.00 0.00 4.17
2101 3234 2.081425 TTTGGGTGATGCGTGCAACC 62.081 55.000 7.09 7.09 43.53 3.77
2102 3235 2.983030 GGGTGATGCGTGCAACCA 60.983 61.111 15.50 7.03 42.75 3.67
2103 3236 2.255252 GGTGATGCGTGCAACCAC 59.745 61.111 17.09 17.09 38.62 4.16
2104 3237 2.260869 GGTGATGCGTGCAACCACT 61.261 57.895 21.54 0.00 39.86 4.00
2105 3238 1.654220 GTGATGCGTGCAACCACTT 59.346 52.632 17.71 0.00 39.86 3.16
2106 3239 0.030638 GTGATGCGTGCAACCACTTT 59.969 50.000 17.71 0.00 39.86 2.66
2107 3240 1.265635 GTGATGCGTGCAACCACTTTA 59.734 47.619 17.71 0.00 39.86 1.85
2108 3241 2.095263 GTGATGCGTGCAACCACTTTAT 60.095 45.455 17.71 0.00 39.86 1.40
2109 3242 2.556189 TGATGCGTGCAACCACTTTATT 59.444 40.909 0.00 0.00 39.86 1.40
2110 3243 3.753797 TGATGCGTGCAACCACTTTATTA 59.246 39.130 0.00 0.00 39.86 0.98
2111 3244 4.397730 TGATGCGTGCAACCACTTTATTAT 59.602 37.500 0.00 0.00 39.86 1.28
2112 3245 4.775058 TGCGTGCAACCACTTTATTATT 57.225 36.364 0.00 0.00 39.86 1.40
2113 3246 5.127693 TGCGTGCAACCACTTTATTATTT 57.872 34.783 0.00 0.00 39.86 1.40
2114 3247 6.255596 TGCGTGCAACCACTTTATTATTTA 57.744 33.333 0.00 0.00 39.86 1.40
2115 3248 6.857956 TGCGTGCAACCACTTTATTATTTAT 58.142 32.000 0.00 0.00 39.86 1.40
2116 3249 7.316640 TGCGTGCAACCACTTTATTATTTATT 58.683 30.769 0.00 0.00 39.86 1.40
2117 3250 7.486551 TGCGTGCAACCACTTTATTATTTATTC 59.513 33.333 0.00 0.00 39.86 1.75
2118 3251 7.486551 GCGTGCAACCACTTTATTATTTATTCA 59.513 33.333 0.00 0.00 39.86 2.57
2119 3252 8.794406 CGTGCAACCACTTTATTATTTATTCAC 58.206 33.333 0.00 0.00 39.86 3.18
2120 3253 9.632807 GTGCAACCACTTTATTATTTATTCACA 57.367 29.630 0.00 0.00 38.93 3.58
2141 3274 9.616156 TTCACAAAGACCTTACAAAATAGTACA 57.384 29.630 0.00 0.00 0.00 2.90
2142 3275 9.787435 TCACAAAGACCTTACAAAATAGTACAT 57.213 29.630 0.00 0.00 0.00 2.29
2148 3281 9.877178 AGACCTTACAAAATAGTACATCTGAAG 57.123 33.333 0.00 0.00 0.00 3.02
2149 3282 8.494016 ACCTTACAAAATAGTACATCTGAAGC 57.506 34.615 0.00 0.00 0.00 3.86
2150 3283 7.553044 ACCTTACAAAATAGTACATCTGAAGCC 59.447 37.037 0.00 0.00 0.00 4.35
2151 3284 7.552687 CCTTACAAAATAGTACATCTGAAGCCA 59.447 37.037 0.00 0.00 0.00 4.75
2152 3285 9.113838 CTTACAAAATAGTACATCTGAAGCCAT 57.886 33.333 0.00 0.00 0.00 4.40
2153 3286 7.559590 ACAAAATAGTACATCTGAAGCCATC 57.440 36.000 0.00 0.00 0.00 3.51
2154 3287 7.112122 ACAAAATAGTACATCTGAAGCCATCA 58.888 34.615 0.00 0.00 36.38 3.07
2155 3288 7.776969 ACAAAATAGTACATCTGAAGCCATCAT 59.223 33.333 0.00 0.00 37.44 2.45
2156 3289 7.976135 AAATAGTACATCTGAAGCCATCATC 57.024 36.000 0.00 0.00 37.44 2.92
2157 3290 6.931790 ATAGTACATCTGAAGCCATCATCT 57.068 37.500 0.00 0.00 37.44 2.90
2158 3291 5.627182 AGTACATCTGAAGCCATCATCTT 57.373 39.130 0.00 0.00 37.44 2.40
2159 3292 5.999044 AGTACATCTGAAGCCATCATCTTT 58.001 37.500 0.00 0.00 37.44 2.52
2160 3293 7.129457 AGTACATCTGAAGCCATCATCTTTA 57.871 36.000 0.00 0.00 37.44 1.85
2161 3294 6.989169 AGTACATCTGAAGCCATCATCTTTAC 59.011 38.462 0.00 0.00 37.44 2.01
2162 3295 5.128919 ACATCTGAAGCCATCATCTTTACC 58.871 41.667 0.00 0.00 37.44 2.85
2163 3296 3.797039 TCTGAAGCCATCATCTTTACCG 58.203 45.455 0.00 0.00 37.44 4.02
2164 3297 2.874701 CTGAAGCCATCATCTTTACCGG 59.125 50.000 0.00 0.00 37.44 5.28
2165 3298 1.604278 GAAGCCATCATCTTTACCGGC 59.396 52.381 0.00 0.00 39.90 6.13
2166 3299 0.179018 AGCCATCATCTTTACCGGCC 60.179 55.000 0.00 0.00 40.49 6.13
2167 3300 0.465460 GCCATCATCTTTACCGGCCA 60.465 55.000 0.00 0.00 33.31 5.36
2168 3301 1.819305 GCCATCATCTTTACCGGCCAT 60.819 52.381 0.00 0.00 33.31 4.40
2169 3302 2.586425 CCATCATCTTTACCGGCCATT 58.414 47.619 0.00 0.00 0.00 3.16
2170 3303 2.554032 CCATCATCTTTACCGGCCATTC 59.446 50.000 0.00 0.00 0.00 2.67
2171 3304 3.480470 CATCATCTTTACCGGCCATTCT 58.520 45.455 0.00 0.00 0.00 2.40
2172 3305 2.917933 TCATCTTTACCGGCCATTCTG 58.082 47.619 0.00 0.00 0.00 3.02
2173 3306 2.238646 TCATCTTTACCGGCCATTCTGT 59.761 45.455 0.00 0.00 0.00 3.41
2174 3307 2.871096 TCTTTACCGGCCATTCTGTT 57.129 45.000 0.00 0.00 0.00 3.16
2175 3308 2.432444 TCTTTACCGGCCATTCTGTTG 58.568 47.619 0.00 0.00 0.00 3.33
2176 3309 0.885196 TTTACCGGCCATTCTGTTGC 59.115 50.000 0.00 0.00 0.00 4.17
2177 3310 0.037590 TTACCGGCCATTCTGTTGCT 59.962 50.000 0.00 0.00 0.00 3.91
2178 3311 0.037590 TACCGGCCATTCTGTTGCTT 59.962 50.000 0.00 0.00 0.00 3.91
2179 3312 0.037590 ACCGGCCATTCTGTTGCTTA 59.962 50.000 0.00 0.00 0.00 3.09
2180 3313 0.734889 CCGGCCATTCTGTTGCTTAG 59.265 55.000 2.24 0.00 0.00 2.18
2181 3314 1.453155 CGGCCATTCTGTTGCTTAGT 58.547 50.000 2.24 0.00 0.00 2.24
2182 3315 1.812571 CGGCCATTCTGTTGCTTAGTT 59.187 47.619 2.24 0.00 0.00 2.24
2183 3316 2.414559 CGGCCATTCTGTTGCTTAGTTG 60.415 50.000 2.24 0.00 0.00 3.16
2184 3317 2.599659 GCCATTCTGTTGCTTAGTTGC 58.400 47.619 0.00 0.00 0.00 4.17
2185 3318 2.030007 GCCATTCTGTTGCTTAGTTGCA 60.030 45.455 0.00 0.00 41.65 4.08
2186 3319 3.568538 CCATTCTGTTGCTTAGTTGCAC 58.431 45.455 0.00 0.00 43.20 4.57
2187 3320 3.254166 CCATTCTGTTGCTTAGTTGCACT 59.746 43.478 0.00 0.00 43.20 4.40
2188 3321 4.455533 CCATTCTGTTGCTTAGTTGCACTA 59.544 41.667 0.00 0.00 43.20 2.74
2189 3322 5.048782 CCATTCTGTTGCTTAGTTGCACTAA 60.049 40.000 8.02 8.02 43.20 2.24
2190 3323 5.418310 TTCTGTTGCTTAGTTGCACTAAC 57.582 39.130 0.00 0.00 43.20 2.34
2191 3324 3.813166 TCTGTTGCTTAGTTGCACTAACC 59.187 43.478 0.00 0.00 43.20 2.85
2200 3333 2.870411 AGTTGCACTAACCGTTTGACTC 59.130 45.455 0.00 0.00 40.24 3.36
2212 3345 2.839026 CGTTTGACTCGTACGAGATGTC 59.161 50.000 42.94 31.98 44.53 3.06
2259 3392 4.627611 ATGTATGCTTTGTGTGCTGATC 57.372 40.909 0.00 0.00 0.00 2.92
2262 3395 0.867746 TGCTTTGTGTGCTGATCGAC 59.132 50.000 0.00 0.00 0.00 4.20
2267 3400 2.078849 TGTGTGCTGATCGACGAATT 57.921 45.000 0.00 0.00 0.00 2.17
2272 3405 3.991121 TGTGCTGATCGACGAATTTGTTA 59.009 39.130 0.00 0.00 0.00 2.41
2287 3420 2.172851 TGTTATGTTCCCACGGTGAC 57.827 50.000 10.28 0.26 0.00 3.67
2303 3436 7.255001 CCCACGGTGACCAACTAATTATAAATC 60.255 40.741 10.28 0.00 0.00 2.17
2305 3438 8.335356 CACGGTGACCAACTAATTATAAATCTG 58.665 37.037 0.74 0.00 0.00 2.90
2350 3483 3.837146 ACAAATGTCATATGGTGGCCAAA 59.163 39.130 7.24 0.00 36.95 3.28
2358 3491 5.122082 GTCATATGGTGGCCAAACATTTTTG 59.878 40.000 24.35 19.16 41.71 2.44
2361 3494 3.274288 TGGTGGCCAAACATTTTTGTTC 58.726 40.909 7.24 0.00 40.61 3.18
2362 3495 2.616376 GGTGGCCAAACATTTTTGTTCC 59.384 45.455 7.24 0.00 40.61 3.62
2370 3503 6.648725 GCCAAACATTTTTGTTCCTTAGCATA 59.351 34.615 3.78 0.00 40.61 3.14
2376 3509 9.206870 ACATTTTTGTTCCTTAGCATATTGTTG 57.793 29.630 0.00 0.00 0.00 3.33
2385 3518 7.044181 TCCTTAGCATATTGTTGAGTTGAGAG 58.956 38.462 0.00 0.00 0.00 3.20
2391 3524 8.263640 AGCATATTGTTGAGTTGAGAGTTATCT 58.736 33.333 0.00 0.00 38.98 1.98
2404 3537 7.815840 TGAGAGTTATCTGATGAGTAGAAGG 57.184 40.000 0.00 0.00 35.30 3.46
2410 3544 9.660180 AGTTATCTGATGAGTAGAAGGTTTTTC 57.340 33.333 0.00 0.00 0.00 2.29
2485 3652 3.356290 ACTTTGCAGTCAGTTTGGACTT 58.644 40.909 0.00 0.00 45.59 3.01
2487 3654 3.781079 TTGCAGTCAGTTTGGACTTTG 57.219 42.857 0.00 0.00 45.59 2.77
2502 3669 4.065789 GGACTTTGAAGGTGGAACTACTG 58.934 47.826 0.00 0.00 36.74 2.74
2512 3679 3.058224 GGTGGAACTACTGATGCAACAAC 60.058 47.826 0.00 0.00 36.74 3.32
2525 3692 1.859998 GCAACAACTTGCCTCGTGAAC 60.860 52.381 0.00 0.00 46.27 3.18
2549 3724 8.635877 ACGAGAGATTTTCTATGACATAACAC 57.364 34.615 0.00 0.00 35.87 3.32
2633 4901 8.134895 TCCTCATTGTTGATTTGTTGTTTCTAC 58.865 33.333 0.00 0.00 0.00 2.59
2634 4902 7.920151 CCTCATTGTTGATTTGTTGTTTCTACA 59.080 33.333 0.00 0.00 0.00 2.74
2635 4903 9.299963 CTCATTGTTGATTTGTTGTTTCTACAA 57.700 29.630 0.00 0.00 41.82 2.41
2655 4923 2.379972 ACAAACGAAATGGGTGGTTGA 58.620 42.857 0.00 0.00 0.00 3.18
2668 4936 0.660488 TGGTTGACGTTGACATGCAC 59.340 50.000 0.00 0.00 0.00 4.57
2669 4937 0.660488 GGTTGACGTTGACATGCACA 59.340 50.000 0.00 0.00 0.00 4.57
2670 4938 1.334059 GGTTGACGTTGACATGCACAG 60.334 52.381 0.00 0.00 0.00 3.66
2672 4940 0.813210 TGACGTTGACATGCACAGCA 60.813 50.000 0.00 0.00 44.86 4.41
2692 4960 9.248291 CACAGCATAAAACTACATTGTTCTTTT 57.752 29.630 0.00 2.46 0.00 2.27
2721 4989 6.606395 GGAAACCACCAGACTACTAGATCTTA 59.394 42.308 0.00 0.00 0.00 2.10
2729 4997 7.068839 ACCAGACTACTAGATCTTATTGTGGTG 59.931 40.741 10.89 4.05 27.41 4.17
2743 5011 5.902613 ATTGTGGTGGAACAAGATACATG 57.097 39.130 0.00 0.00 44.16 3.21
2748 5016 3.947196 GGTGGAACAAGATACATGCATGA 59.053 43.478 32.75 16.49 44.16 3.07
2761 5029 4.520179 ACATGCATGATTAGCAGAGACAA 58.480 39.130 32.75 0.00 46.36 3.18
2773 5041 8.752766 ATTAGCAGAGACAAACAATTGAAATG 57.247 30.769 13.59 10.02 38.94 2.32
2780 5048 2.522836 AACAATTGAAATGGCGCACA 57.477 40.000 13.59 5.20 0.00 4.57
2809 5077 1.757682 AGCACCCTGTTTGACGAAAA 58.242 45.000 0.00 0.00 0.00 2.29
2816 5084 5.175491 CACCCTGTTTGACGAAAAATGATTG 59.825 40.000 0.00 0.00 0.00 2.67
2820 5088 6.257630 CCTGTTTGACGAAAAATGATTGGTTT 59.742 34.615 0.00 0.00 0.00 3.27
2880 5151 7.106890 TGATTTACTTATCATTTCACCGACCA 58.893 34.615 0.00 0.00 29.82 4.02
2911 5182 5.006649 CCGTCGATCTGCATTAGAATGAAAA 59.993 40.000 6.43 0.00 39.30 2.29
2912 5183 5.898606 CGTCGATCTGCATTAGAATGAAAAC 59.101 40.000 6.43 0.00 39.30 2.43
2913 5184 5.898606 GTCGATCTGCATTAGAATGAAAACG 59.101 40.000 6.43 5.13 39.30 3.60
2914 5185 5.810074 TCGATCTGCATTAGAATGAAAACGA 59.190 36.000 6.43 7.03 39.30 3.85
2915 5186 6.479990 TCGATCTGCATTAGAATGAAAACGAT 59.520 34.615 6.43 0.00 39.30 3.73
2916 5187 7.651704 TCGATCTGCATTAGAATGAAAACGATA 59.348 33.333 6.43 0.00 39.30 2.92
2943 5214 5.124138 GCAAGAAGATCTATACGCTAGCCTA 59.876 44.000 9.66 2.05 0.00 3.93
2946 5217 9.062524 CAAGAAGATCTATACGCTAGCCTATAT 57.937 37.037 9.66 7.51 0.00 0.86
2949 5220 5.708230 AGATCTATACGCTAGCCTATATGCC 59.292 44.000 9.66 4.33 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 8.755461 CACTTTAGTGCTAGCTGCTCGTAAGA 62.755 46.154 17.23 0.00 41.45 2.10
13 14 2.753452 ACTTTAGTGCTAGCTGCTCGTA 59.247 45.455 17.23 0.00 43.37 3.43
14 15 1.546476 ACTTTAGTGCTAGCTGCTCGT 59.454 47.619 17.23 9.22 43.37 4.18
46 47 9.474920 CAACTTTTGTGCTATCCTTTCAAAATA 57.525 29.630 0.00 0.00 37.36 1.40
47 48 8.203485 TCAACTTTTGTGCTATCCTTTCAAAAT 58.797 29.630 0.00 0.00 37.36 1.82
48 49 7.491048 GTCAACTTTTGTGCTATCCTTTCAAAA 59.509 33.333 0.00 0.00 36.81 2.44
49 50 6.978080 GTCAACTTTTGTGCTATCCTTTCAAA 59.022 34.615 0.00 0.00 0.00 2.69
50 51 6.503524 GTCAACTTTTGTGCTATCCTTTCAA 58.496 36.000 0.00 0.00 0.00 2.69
51 52 5.277779 CGTCAACTTTTGTGCTATCCTTTCA 60.278 40.000 0.00 0.00 0.00 2.69
52 53 5.147162 CGTCAACTTTTGTGCTATCCTTTC 58.853 41.667 0.00 0.00 0.00 2.62
53 54 4.023193 CCGTCAACTTTTGTGCTATCCTTT 60.023 41.667 0.00 0.00 0.00 3.11
54 55 3.502211 CCGTCAACTTTTGTGCTATCCTT 59.498 43.478 0.00 0.00 0.00 3.36
55 56 3.074412 CCGTCAACTTTTGTGCTATCCT 58.926 45.455 0.00 0.00 0.00 3.24
56 57 2.161609 CCCGTCAACTTTTGTGCTATCC 59.838 50.000 0.00 0.00 0.00 2.59
57 58 2.414161 GCCCGTCAACTTTTGTGCTATC 60.414 50.000 0.00 0.00 0.00 2.08
58 59 1.539827 GCCCGTCAACTTTTGTGCTAT 59.460 47.619 0.00 0.00 0.00 2.97
59 60 0.948678 GCCCGTCAACTTTTGTGCTA 59.051 50.000 0.00 0.00 0.00 3.49
60 61 1.733526 GCCCGTCAACTTTTGTGCT 59.266 52.632 0.00 0.00 0.00 4.40
61 62 1.657181 CGCCCGTCAACTTTTGTGC 60.657 57.895 0.00 0.00 0.00 4.57
62 63 1.657181 GCGCCCGTCAACTTTTGTG 60.657 57.895 0.00 0.00 0.00 3.33
63 64 1.452145 ATGCGCCCGTCAACTTTTGT 61.452 50.000 4.18 0.00 0.00 2.83
64 65 1.003262 CATGCGCCCGTCAACTTTTG 61.003 55.000 4.18 0.00 0.00 2.44
65 66 1.285641 CATGCGCCCGTCAACTTTT 59.714 52.632 4.18 0.00 0.00 2.27
66 67 2.953821 CATGCGCCCGTCAACTTT 59.046 55.556 4.18 0.00 0.00 2.66
67 68 3.737172 GCATGCGCCCGTCAACTT 61.737 61.111 4.18 0.00 0.00 2.66
69 70 4.759096 GTGCATGCGCCCGTCAAC 62.759 66.667 20.70 2.10 37.32 3.18
72 73 4.241999 GATGTGCATGCGCCCGTC 62.242 66.667 27.42 18.30 37.32 4.79
75 76 1.246056 ATATGGATGTGCATGCGCCC 61.246 55.000 27.42 21.71 37.32 6.13
76 77 1.399440 CTATATGGATGTGCATGCGCC 59.601 52.381 27.42 18.27 37.32 6.53
77 78 1.202110 GCTATATGGATGTGCATGCGC 60.202 52.381 24.25 24.25 39.24 6.09
78 79 1.061566 CGCTATATGGATGTGCATGCG 59.938 52.381 14.09 4.02 35.22 4.73
79 80 1.202110 GCGCTATATGGATGTGCATGC 60.202 52.381 11.82 11.82 37.20 4.06
80 81 2.095372 CAGCGCTATATGGATGTGCATG 59.905 50.000 10.99 0.00 39.38 4.06
81 82 2.027837 TCAGCGCTATATGGATGTGCAT 60.028 45.455 10.99 0.00 39.38 3.96
82 83 1.344114 TCAGCGCTATATGGATGTGCA 59.656 47.619 10.99 0.00 39.38 4.57
83 84 1.998315 CTCAGCGCTATATGGATGTGC 59.002 52.381 10.99 0.00 37.47 4.57
84 85 1.998315 GCTCAGCGCTATATGGATGTG 59.002 52.381 10.99 0.00 35.14 3.21
85 86 1.620323 TGCTCAGCGCTATATGGATGT 59.380 47.619 10.99 0.00 40.11 3.06
86 87 1.998315 GTGCTCAGCGCTATATGGATG 59.002 52.381 10.99 0.00 40.11 3.51
87 88 1.403382 CGTGCTCAGCGCTATATGGAT 60.403 52.381 10.99 0.00 40.11 3.41
88 89 0.039165 CGTGCTCAGCGCTATATGGA 60.039 55.000 10.99 0.93 40.11 3.41
89 90 0.039165 TCGTGCTCAGCGCTATATGG 60.039 55.000 10.99 0.00 40.11 2.74
90 91 1.334994 CTCGTGCTCAGCGCTATATG 58.665 55.000 10.99 0.00 40.11 1.78
91 92 0.242286 CCTCGTGCTCAGCGCTATAT 59.758 55.000 10.99 0.00 40.11 0.86
92 93 0.818040 TCCTCGTGCTCAGCGCTATA 60.818 55.000 10.99 0.00 40.11 1.31
93 94 1.459455 ATCCTCGTGCTCAGCGCTAT 61.459 55.000 10.99 0.00 40.11 2.97
94 95 2.121538 ATCCTCGTGCTCAGCGCTA 61.122 57.895 10.99 0.00 40.11 4.26
95 96 3.456365 ATCCTCGTGCTCAGCGCT 61.456 61.111 2.64 2.64 40.11 5.92
96 97 3.260483 CATCCTCGTGCTCAGCGC 61.260 66.667 0.00 0.00 39.77 5.92
97 98 3.260483 GCATCCTCGTGCTCAGCG 61.260 66.667 0.00 0.00 41.82 5.18
98 99 3.260483 CGCATCCTCGTGCTCAGC 61.260 66.667 0.00 0.00 42.88 4.26
99 100 2.182791 ACGCATCCTCGTGCTCAG 59.817 61.111 0.00 0.00 42.88 3.35
105 106 4.457496 CAGGCCACGCATCCTCGT 62.457 66.667 5.01 0.00 44.35 4.18
107 108 2.615227 ATTCCAGGCCACGCATCCTC 62.615 60.000 5.01 0.00 0.00 3.71
108 109 2.615227 GATTCCAGGCCACGCATCCT 62.615 60.000 5.01 0.00 0.00 3.24
109 110 2.124151 ATTCCAGGCCACGCATCC 60.124 61.111 5.01 0.00 0.00 3.51
110 111 2.189499 GGATTCCAGGCCACGCATC 61.189 63.158 5.01 0.51 0.00 3.91
111 112 2.124151 GGATTCCAGGCCACGCAT 60.124 61.111 5.01 0.00 0.00 4.73
142 143 1.949257 CCGGAGTTGTGGCTTTCAC 59.051 57.895 0.00 0.00 46.23 3.18
184 185 1.656652 ATCTCAGTCGGATTTTGGCG 58.343 50.000 0.00 0.00 0.00 5.69
196 197 1.203075 GGGAGGGGACGATATCTCAGT 60.203 57.143 0.34 0.00 0.00 3.41
198 199 0.114560 GGGGAGGGGACGATATCTCA 59.885 60.000 0.34 0.00 0.00 3.27
199 200 0.966370 CGGGGAGGGGACGATATCTC 60.966 65.000 0.34 0.00 0.00 2.75
200 201 1.076906 CGGGGAGGGGACGATATCT 59.923 63.158 0.34 0.00 0.00 1.98
201 202 1.228800 ACGGGGAGGGGACGATATC 60.229 63.158 0.00 0.00 0.00 1.63
202 203 1.228800 GACGGGGAGGGGACGATAT 60.229 63.158 0.00 0.00 0.00 1.63
203 204 2.196776 GACGGGGAGGGGACGATA 59.803 66.667 0.00 0.00 0.00 2.92
204 205 4.070265 TGACGGGGAGGGGACGAT 62.070 66.667 0.00 0.00 0.00 3.73
205 206 4.753662 CTGACGGGGAGGGGACGA 62.754 72.222 0.00 0.00 0.00 4.20
206 207 4.753662 TCTGACGGGGAGGGGACG 62.754 72.222 0.00 0.00 0.00 4.79
207 208 3.075641 GTCTGACGGGGAGGGGAC 61.076 72.222 0.00 0.00 0.00 4.46
208 209 4.753662 CGTCTGACGGGGAGGGGA 62.754 72.222 21.78 0.00 38.08 4.81
209 210 4.753662 TCGTCTGACGGGGAGGGG 62.754 72.222 27.69 0.00 42.81 4.79
212 213 3.188965 GTCTCGTCTGACGGGGAG 58.811 66.667 27.86 18.51 43.50 4.30
295 326 4.641645 TGGTCACCAGCCCAAGCG 62.642 66.667 0.00 0.00 46.67 4.68
296 327 2.674380 CTGGTCACCAGCCCAAGC 60.674 66.667 12.03 0.00 45.13 4.01
307 338 2.808919 AGGAAGAGAATCGTCTGGTCA 58.191 47.619 0.00 0.00 43.41 4.02
373 404 2.751436 GCGGGGTCACATGCACAT 60.751 61.111 0.00 0.00 0.00 3.21
388 419 0.668401 AGTTTTCCGAGGGTTACGCG 60.668 55.000 3.53 3.53 42.34 6.01
396 427 1.796459 CACCGTAACAGTTTTCCGAGG 59.204 52.381 0.00 0.00 0.00 4.63
398 429 1.219646 GCACCGTAACAGTTTTCCGA 58.780 50.000 0.00 0.00 0.00 4.55
401 432 1.332375 TGCTGCACCGTAACAGTTTTC 59.668 47.619 0.00 0.00 36.26 2.29
404 435 0.179056 AGTGCTGCACCGTAACAGTT 60.179 50.000 27.74 4.35 36.26 3.16
405 436 0.880278 CAGTGCTGCACCGTAACAGT 60.880 55.000 27.74 5.11 36.26 3.55
406 437 1.862123 CAGTGCTGCACCGTAACAG 59.138 57.895 27.74 6.90 34.49 3.16
422 458 5.109210 TCCAAAATAGTAGATGACACGCAG 58.891 41.667 0.00 0.00 0.00 5.18
425 461 5.005394 CCGTTCCAAAATAGTAGATGACACG 59.995 44.000 0.00 0.00 0.00 4.49
428 464 5.753921 CCTCCGTTCCAAAATAGTAGATGAC 59.246 44.000 0.00 0.00 0.00 3.06
430 466 5.914033 TCCTCCGTTCCAAAATAGTAGATG 58.086 41.667 0.00 0.00 0.00 2.90
431 467 6.555463 TTCCTCCGTTCCAAAATAGTAGAT 57.445 37.500 0.00 0.00 0.00 1.98
433 469 7.270047 TGTATTCCTCCGTTCCAAAATAGTAG 58.730 38.462 0.00 0.00 0.00 2.57
435 471 6.057321 TGTATTCCTCCGTTCCAAAATAGT 57.943 37.500 0.00 0.00 0.00 2.12
436 472 6.513393 GCATGTATTCCTCCGTTCCAAAATAG 60.513 42.308 0.00 0.00 0.00 1.73
437 473 5.298276 GCATGTATTCCTCCGTTCCAAAATA 59.702 40.000 0.00 0.00 0.00 1.40
438 474 4.097892 GCATGTATTCCTCCGTTCCAAAAT 59.902 41.667 0.00 0.00 0.00 1.82
439 475 3.442273 GCATGTATTCCTCCGTTCCAAAA 59.558 43.478 0.00 0.00 0.00 2.44
440 476 3.013921 GCATGTATTCCTCCGTTCCAAA 58.986 45.455 0.00 0.00 0.00 3.28
441 477 2.238646 AGCATGTATTCCTCCGTTCCAA 59.761 45.455 0.00 0.00 0.00 3.53
442 478 1.837439 AGCATGTATTCCTCCGTTCCA 59.163 47.619 0.00 0.00 0.00 3.53
443 479 2.622064 AGCATGTATTCCTCCGTTCC 57.378 50.000 0.00 0.00 0.00 3.62
444 480 4.156008 ACAAAAGCATGTATTCCTCCGTTC 59.844 41.667 0.00 0.00 0.00 3.95
445 481 4.079253 ACAAAAGCATGTATTCCTCCGTT 58.921 39.130 0.00 0.00 0.00 4.44
446 482 3.686016 ACAAAAGCATGTATTCCTCCGT 58.314 40.909 0.00 0.00 0.00 4.69
447 483 3.941483 AGACAAAAGCATGTATTCCTCCG 59.059 43.478 0.00 0.00 32.57 4.63
448 484 5.183904 ACAAGACAAAAGCATGTATTCCTCC 59.816 40.000 0.00 0.00 32.75 4.30
449 485 6.259550 ACAAGACAAAAGCATGTATTCCTC 57.740 37.500 0.00 0.00 32.75 3.71
450 486 7.759489 TTACAAGACAAAAGCATGTATTCCT 57.241 32.000 0.00 0.00 32.75 3.36
460 496 9.709600 GCTCTAGAATTATTACAAGACAAAAGC 57.290 33.333 0.00 0.00 0.00 3.51
462 498 9.959721 AGGCTCTAGAATTATTACAAGACAAAA 57.040 29.630 0.00 0.00 0.00 2.44
464 500 9.959721 AAAGGCTCTAGAATTATTACAAGACAA 57.040 29.630 0.00 0.00 0.00 3.18
482 518 6.435292 TGGAGTACTAAAAGAAAAGGCTCT 57.565 37.500 0.00 0.00 0.00 4.09
516 552 9.774742 GTTGAAATCGCTAGAAAGACAAATATT 57.225 29.630 0.00 0.00 0.00 1.28
517 553 8.946085 TGTTGAAATCGCTAGAAAGACAAATAT 58.054 29.630 0.00 0.00 0.00 1.28
518 554 8.317891 TGTTGAAATCGCTAGAAAGACAAATA 57.682 30.769 0.00 0.00 0.00 1.40
519 555 7.202016 TGTTGAAATCGCTAGAAAGACAAAT 57.798 32.000 0.00 0.00 0.00 2.32
520 556 6.612247 TGTTGAAATCGCTAGAAAGACAAA 57.388 33.333 0.00 0.00 0.00 2.83
521 557 6.612247 TTGTTGAAATCGCTAGAAAGACAA 57.388 33.333 0.00 0.00 0.00 3.18
522 558 6.612247 TTTGTTGAAATCGCTAGAAAGACA 57.388 33.333 0.00 0.00 0.00 3.41
523 559 7.269297 GTCATTTGTTGAAATCGCTAGAAAGAC 59.731 37.037 0.00 0.00 35.70 3.01
524 560 7.173218 AGTCATTTGTTGAAATCGCTAGAAAGA 59.827 33.333 0.00 0.00 35.70 2.52
525 561 7.301054 AGTCATTTGTTGAAATCGCTAGAAAG 58.699 34.615 0.00 0.00 35.70 2.62
526 562 7.202016 AGTCATTTGTTGAAATCGCTAGAAA 57.798 32.000 0.00 0.00 35.70 2.52
527 563 6.801539 AGTCATTTGTTGAAATCGCTAGAA 57.198 33.333 0.00 0.00 35.70 2.10
528 564 6.871492 TGTAGTCATTTGTTGAAATCGCTAGA 59.129 34.615 0.00 0.00 35.70 2.43
529 565 7.060600 TGTAGTCATTTGTTGAAATCGCTAG 57.939 36.000 0.00 0.00 35.70 3.42
530 566 7.609760 ATGTAGTCATTTGTTGAAATCGCTA 57.390 32.000 0.00 0.00 35.70 4.26
531 567 5.940192 TGTAGTCATTTGTTGAAATCGCT 57.060 34.783 0.00 0.00 35.70 4.93
532 568 7.240674 TGTATGTAGTCATTTGTTGAAATCGC 58.759 34.615 0.00 0.00 35.70 4.58
533 569 9.605955 TTTGTATGTAGTCATTTGTTGAAATCG 57.394 29.630 0.00 0.00 35.70 3.34
535 571 9.410556 GCTTTGTATGTAGTCATTTGTTGAAAT 57.589 29.630 0.00 0.00 35.70 2.17
536 572 8.409371 TGCTTTGTATGTAGTCATTTGTTGAAA 58.591 29.630 0.00 0.00 35.70 2.69
537 573 7.935520 TGCTTTGTATGTAGTCATTTGTTGAA 58.064 30.769 0.00 0.00 35.70 2.69
538 574 7.503521 TGCTTTGTATGTAGTCATTTGTTGA 57.496 32.000 0.00 0.00 35.70 3.18
539 575 8.572828 TTTGCTTTGTATGTAGTCATTTGTTG 57.427 30.769 0.00 0.00 35.70 3.33
540 576 9.762933 ATTTTGCTTTGTATGTAGTCATTTGTT 57.237 25.926 0.00 0.00 35.70 2.83
554 590 9.685828 GTGTAGGTTCATTTATTTTGCTTTGTA 57.314 29.630 0.00 0.00 0.00 2.41
555 591 8.421002 AGTGTAGGTTCATTTATTTTGCTTTGT 58.579 29.630 0.00 0.00 0.00 2.83
556 592 8.816640 AGTGTAGGTTCATTTATTTTGCTTTG 57.183 30.769 0.00 0.00 0.00 2.77
557 593 8.860088 AGAGTGTAGGTTCATTTATTTTGCTTT 58.140 29.630 0.00 0.00 0.00 3.51
558 594 8.409358 AGAGTGTAGGTTCATTTATTTTGCTT 57.591 30.769 0.00 0.00 0.00 3.91
559 595 9.515226 TTAGAGTGTAGGTTCATTTATTTTGCT 57.485 29.630 0.00 0.00 0.00 3.91
597 633 7.771361 TCAAATGGTTACAACATACGGATGTAT 59.229 33.333 15.10 8.21 45.93 2.29
598 634 7.104290 TCAAATGGTTACAACATACGGATGTA 58.896 34.615 15.10 0.00 45.93 2.29
600 636 6.429791 TCAAATGGTTACAACATACGGATG 57.570 37.500 5.94 5.94 39.16 3.51
601 637 7.455641 TTTCAAATGGTTACAACATACGGAT 57.544 32.000 0.00 0.00 0.00 4.18
602 638 6.879276 TTTCAAATGGTTACAACATACGGA 57.121 33.333 0.00 0.00 0.00 4.69
603 639 7.061673 CACATTTCAAATGGTTACAACATACGG 59.938 37.037 14.70 0.00 0.00 4.02
604 640 7.593273 ACACATTTCAAATGGTTACAACATACG 59.407 33.333 14.70 0.00 0.00 3.06
605 641 8.810652 ACACATTTCAAATGGTTACAACATAC 57.189 30.769 14.70 0.00 0.00 2.39
607 643 8.855110 TCTACACATTTCAAATGGTTACAACAT 58.145 29.630 14.70 0.00 0.00 2.71
608 644 8.226819 TCTACACATTTCAAATGGTTACAACA 57.773 30.769 14.70 0.00 0.00 3.33
609 645 9.522804 TTTCTACACATTTCAAATGGTTACAAC 57.477 29.630 14.70 0.00 0.00 3.32
610 646 9.743057 CTTTCTACACATTTCAAATGGTTACAA 57.257 29.630 14.70 0.00 0.00 2.41
611 647 9.126151 TCTTTCTACACATTTCAAATGGTTACA 57.874 29.630 14.70 0.00 0.00 2.41
612 648 9.394477 GTCTTTCTACACATTTCAAATGGTTAC 57.606 33.333 14.70 0.00 0.00 2.50
613 649 9.126151 TGTCTTTCTACACATTTCAAATGGTTA 57.874 29.630 14.70 4.28 0.00 2.85
614 650 8.006298 TGTCTTTCTACACATTTCAAATGGTT 57.994 30.769 14.70 3.31 0.00 3.67
615 651 7.581213 TGTCTTTCTACACATTTCAAATGGT 57.419 32.000 14.70 11.25 0.00 3.55
616 652 8.870160 TTTGTCTTTCTACACATTTCAAATGG 57.130 30.769 14.70 6.13 0.00 3.16
627 663 9.968743 CGTTCCTAAATATTTGTCTTTCTACAC 57.031 33.333 11.05 0.00 0.00 2.90
628 664 9.158233 CCGTTCCTAAATATTTGTCTTTCTACA 57.842 33.333 11.05 0.00 0.00 2.74
629 665 9.374838 TCCGTTCCTAAATATTTGTCTTTCTAC 57.625 33.333 11.05 0.00 0.00 2.59
630 666 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
631 667 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
632 668 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
633 669 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
634 670 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
635 671 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
636 672 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
637 673 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
638 674 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
639 675 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
640 676 7.628501 ATTACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
641 677 7.291651 TCAATTACTCCCTCCGTTCCTAAATAT 59.708 37.037 0.00 0.00 0.00 1.28
642 678 6.612456 TCAATTACTCCCTCCGTTCCTAAATA 59.388 38.462 0.00 0.00 0.00 1.40
643 679 5.427481 TCAATTACTCCCTCCGTTCCTAAAT 59.573 40.000 0.00 0.00 0.00 1.40
644 680 4.778958 TCAATTACTCCCTCCGTTCCTAAA 59.221 41.667 0.00 0.00 0.00 1.85
645 681 4.355549 TCAATTACTCCCTCCGTTCCTAA 58.644 43.478 0.00 0.00 0.00 2.69
646 682 3.985127 TCAATTACTCCCTCCGTTCCTA 58.015 45.455 0.00 0.00 0.00 2.94
647 683 2.829023 TCAATTACTCCCTCCGTTCCT 58.171 47.619 0.00 0.00 0.00 3.36
648 684 3.840124 ATCAATTACTCCCTCCGTTCC 57.160 47.619 0.00 0.00 0.00 3.62
649 685 3.877508 CCAATCAATTACTCCCTCCGTTC 59.122 47.826 0.00 0.00 0.00 3.95
650 686 3.886123 CCAATCAATTACTCCCTCCGTT 58.114 45.455 0.00 0.00 0.00 4.44
651 687 2.421529 GCCAATCAATTACTCCCTCCGT 60.422 50.000 0.00 0.00 0.00 4.69
652 688 2.222027 GCCAATCAATTACTCCCTCCG 58.778 52.381 0.00 0.00 0.00 4.63
653 689 3.217626 CTGCCAATCAATTACTCCCTCC 58.782 50.000 0.00 0.00 0.00 4.30
654 690 2.620585 GCTGCCAATCAATTACTCCCTC 59.379 50.000 0.00 0.00 0.00 4.30
655 691 2.659428 GCTGCCAATCAATTACTCCCT 58.341 47.619 0.00 0.00 0.00 4.20
656 692 1.334869 CGCTGCCAATCAATTACTCCC 59.665 52.381 0.00 0.00 0.00 4.30
657 693 1.334869 CCGCTGCCAATCAATTACTCC 59.665 52.381 0.00 0.00 0.00 3.85
658 694 1.268743 GCCGCTGCCAATCAATTACTC 60.269 52.381 0.00 0.00 0.00 2.59
659 695 0.740737 GCCGCTGCCAATCAATTACT 59.259 50.000 0.00 0.00 0.00 2.24
660 696 0.455410 TGCCGCTGCCAATCAATTAC 59.545 50.000 0.00 0.00 36.33 1.89
663 699 1.216178 GTTGCCGCTGCCAATCAAT 59.784 52.632 0.00 0.00 36.33 2.57
705 835 1.336887 CCGTGACTTCACTGATTCCGT 60.337 52.381 7.74 0.00 44.34 4.69
710 840 1.000955 GTGTCCCGTGACTTCACTGAT 59.999 52.381 7.74 0.00 44.34 2.90
734 864 3.555817 GTGTTACATGCACGTACGC 57.444 52.632 16.72 0.00 0.00 4.42
752 882 1.148157 CTGACGAAGCTGTATGGCCG 61.148 60.000 0.00 0.00 0.00 6.13
763 907 5.230942 AGTCAATAACTTGTCCTGACGAAG 58.769 41.667 0.00 7.48 41.01 3.79
780 924 6.343703 GGGTGTTTATCCTACGTTAGTCAAT 58.656 40.000 0.00 0.00 0.00 2.57
790 934 1.474498 CCAGGCGGGTGTTTATCCTAC 60.474 57.143 0.00 0.00 0.00 3.18
797 941 1.037030 CATATGCCAGGCGGGTGTTT 61.037 55.000 7.03 0.00 39.65 2.83
800 944 2.188829 CACATATGCCAGGCGGGTG 61.189 63.158 7.03 8.48 39.65 4.61
802 946 2.595463 CCACATATGCCAGGCGGG 60.595 66.667 7.03 0.00 40.85 6.13
810 954 4.700268 TCACATTGTGAACCACATATGC 57.300 40.909 16.95 0.00 44.16 3.14
824 1821 5.182570 CCCTATATGGCTGTCATTCACATTG 59.817 44.000 0.00 0.00 37.30 2.82
838 1835 6.062095 ACATTTACTGTGTTCCCTATATGGC 58.938 40.000 0.00 0.00 36.48 4.40
840 1837 9.607988 TGTAACATTTACTGTGTTCCCTATATG 57.392 33.333 0.00 0.00 40.13 1.78
843 1855 7.556275 CCATGTAACATTTACTGTGTTCCCTAT 59.444 37.037 0.00 0.00 40.13 2.57
844 1856 6.882140 CCATGTAACATTTACTGTGTTCCCTA 59.118 38.462 0.00 0.00 40.13 3.53
845 1857 5.710099 CCATGTAACATTTACTGTGTTCCCT 59.290 40.000 0.00 0.00 40.13 4.20
846 1858 5.708230 TCCATGTAACATTTACTGTGTTCCC 59.292 40.000 0.00 0.00 40.13 3.97
847 1859 6.811253 TCCATGTAACATTTACTGTGTTCC 57.189 37.500 0.00 0.00 40.13 3.62
848 1860 8.094798 TCTTCCATGTAACATTTACTGTGTTC 57.905 34.615 0.00 0.00 40.13 3.18
849 1861 8.349983 GTTCTTCCATGTAACATTTACTGTGTT 58.650 33.333 0.00 0.00 42.12 3.32
850 1862 7.500892 TGTTCTTCCATGTAACATTTACTGTGT 59.499 33.333 0.00 0.00 38.39 3.72
851 1863 7.870826 TGTTCTTCCATGTAACATTTACTGTG 58.129 34.615 0.00 0.00 38.39 3.66
852 1864 8.635765 ATGTTCTTCCATGTAACATTTACTGT 57.364 30.769 6.98 0.00 40.07 3.55
854 1866 8.893727 GCTATGTTCTTCCATGTAACATTTACT 58.106 33.333 14.33 0.02 42.31 2.24
855 1867 8.129211 GGCTATGTTCTTCCATGTAACATTTAC 58.871 37.037 14.33 7.67 42.31 2.01
856 1868 7.284489 GGGCTATGTTCTTCCATGTAACATTTA 59.716 37.037 14.33 2.57 42.31 1.40
857 1869 6.096846 GGGCTATGTTCTTCCATGTAACATTT 59.903 38.462 14.33 1.05 42.31 2.32
858 1870 5.594317 GGGCTATGTTCTTCCATGTAACATT 59.406 40.000 14.33 4.34 42.31 2.71
859 1871 5.133221 GGGCTATGTTCTTCCATGTAACAT 58.867 41.667 13.85 13.85 44.01 2.71
860 1872 4.523083 GGGCTATGTTCTTCCATGTAACA 58.477 43.478 0.00 0.00 37.51 2.41
861 1873 3.883489 GGGGCTATGTTCTTCCATGTAAC 59.117 47.826 0.00 0.00 0.00 2.50
862 1874 3.525609 TGGGGCTATGTTCTTCCATGTAA 59.474 43.478 0.00 0.00 0.00 2.41
863 1875 3.119319 TGGGGCTATGTTCTTCCATGTA 58.881 45.455 0.00 0.00 0.00 2.29
864 1876 1.922447 TGGGGCTATGTTCTTCCATGT 59.078 47.619 0.00 0.00 0.00 3.21
865 1877 2.734755 TGGGGCTATGTTCTTCCATG 57.265 50.000 0.00 0.00 0.00 3.66
866 1878 2.108952 GGATGGGGCTATGTTCTTCCAT 59.891 50.000 0.00 0.00 37.66 3.41
867 1879 1.494721 GGATGGGGCTATGTTCTTCCA 59.505 52.381 0.00 0.00 0.00 3.53
923 1935 0.393448 TTGGGTTCGTCATCGTCCAA 59.607 50.000 0.00 0.00 38.77 3.53
950 1962 7.452813 GGGAGATTTTATAGGATGCTGGAAATT 59.547 37.037 0.00 0.00 0.00 1.82
971 2014 3.695825 GGAGGGAGGGGTGGGAGA 61.696 72.222 0.00 0.00 0.00 3.71
982 2025 1.920325 CTGGCTTCTGGTGGAGGGA 60.920 63.158 0.00 0.00 0.00 4.20
991 2034 2.438075 GGAGCTGGCTGGCTTCTG 60.438 66.667 0.00 0.00 43.20 3.02
1012 2059 1.056660 GGAGGAGGACAAGTTGGTGA 58.943 55.000 7.96 0.00 0.00 4.02
1021 2068 0.971386 GTTAACGGTGGAGGAGGACA 59.029 55.000 0.00 0.00 0.00 4.02
1033 2080 2.030958 GCTGGTCGTGGGTTAACGG 61.031 63.158 0.00 0.00 43.73 4.44
1034 2081 1.289109 CTGCTGGTCGTGGGTTAACG 61.289 60.000 0.00 0.00 44.92 3.18
1035 2082 1.574702 GCTGCTGGTCGTGGGTTAAC 61.575 60.000 0.00 0.00 0.00 2.01
1066 2119 1.969923 ACTTGAGAGCAGAGCTTCTGT 59.030 47.619 12.71 0.00 45.94 3.41
1076 2129 1.270518 GGCAGTTGAGACTTGAGAGCA 60.271 52.381 0.00 0.00 32.54 4.26
1077 2130 1.437625 GGCAGTTGAGACTTGAGAGC 58.562 55.000 0.00 0.00 32.54 4.09
1079 2132 1.328279 TCGGCAGTTGAGACTTGAGA 58.672 50.000 0.00 0.00 32.54 3.27
1103 2159 0.864377 CGCGGATCTTGCTGCATTTG 60.864 55.000 1.84 0.00 40.17 2.32
1526 2594 0.304705 CGAATGGCCTATGCGTGTTC 59.695 55.000 3.32 0.00 38.85 3.18
1685 2800 2.628178 CCACGCCCTTCAGTCAGATATA 59.372 50.000 0.00 0.00 0.00 0.86
1694 2809 4.760047 CCGGACCACGCCCTTCAG 62.760 72.222 0.00 0.00 42.52 3.02
1725 2847 3.851897 TTCACAATTCGGGGCGCCA 62.852 57.895 30.85 7.96 0.00 5.69
1755 2877 3.349006 CAGTTGCTCAAGCGCGGT 61.349 61.111 4.23 4.23 45.83 5.68
1792 2914 1.993369 GATTTGCTAGCCACACGCCC 61.993 60.000 13.29 0.00 38.78 6.13
1810 2932 5.916318 GTACAGAGCTGGTACTAGAGTAGA 58.084 45.833 10.90 0.00 38.42 2.59
1848 2970 4.192317 ACAAGTTTCTTCTGACCACTGTC 58.808 43.478 0.00 0.00 42.12 3.51
1851 2973 6.591935 TCATTACAAGTTTCTTCTGACCACT 58.408 36.000 0.00 0.00 0.00 4.00
1853 2975 8.999431 GTAATCATTACAAGTTTCTTCTGACCA 58.001 33.333 2.40 0.00 36.17 4.02
1942 3064 4.321230 GGAAGACAAGCTTGTAAATGGGTG 60.321 45.833 31.20 2.31 42.43 4.61
1949 3071 4.100963 TGACAGAGGAAGACAAGCTTGTAA 59.899 41.667 31.20 0.00 42.43 2.41
1998 3131 3.442625 TCGACAATCAGACGACCTACATT 59.557 43.478 0.00 0.00 39.36 2.71
2058 3191 5.135555 GCAGAGGCTAAGGGTATTCCTCC 62.136 56.522 3.23 0.00 43.21 4.30
2059 3192 2.037902 GCAGAGGCTAAGGGTATTCCTC 59.962 54.545 0.00 0.00 40.43 3.71
2060 3193 2.050918 GCAGAGGCTAAGGGTATTCCT 58.949 52.381 0.00 0.00 42.16 3.36
2061 3194 1.768870 TGCAGAGGCTAAGGGTATTCC 59.231 52.381 0.00 0.00 41.91 3.01
2062 3195 3.778954 ATGCAGAGGCTAAGGGTATTC 57.221 47.619 0.00 0.00 41.91 1.75
2063 3196 4.210331 CAAATGCAGAGGCTAAGGGTATT 58.790 43.478 0.00 0.00 41.91 1.89
2064 3197 3.435601 CCAAATGCAGAGGCTAAGGGTAT 60.436 47.826 0.00 0.00 41.91 2.73
2065 3198 2.092429 CCAAATGCAGAGGCTAAGGGTA 60.092 50.000 0.00 0.00 41.91 3.69
2066 3199 1.341383 CCAAATGCAGAGGCTAAGGGT 60.341 52.381 0.00 0.00 41.91 4.34
2067 3200 1.396653 CCAAATGCAGAGGCTAAGGG 58.603 55.000 0.00 0.00 41.91 3.95
2068 3201 1.341383 ACCCAAATGCAGAGGCTAAGG 60.341 52.381 0.00 0.00 41.91 2.69
2069 3202 1.747355 CACCCAAATGCAGAGGCTAAG 59.253 52.381 0.00 0.00 41.91 2.18
2070 3203 1.354031 TCACCCAAATGCAGAGGCTAA 59.646 47.619 0.00 0.00 41.91 3.09
2071 3204 0.991146 TCACCCAAATGCAGAGGCTA 59.009 50.000 0.00 0.00 41.91 3.93
2072 3205 0.333993 ATCACCCAAATGCAGAGGCT 59.666 50.000 0.00 0.00 41.91 4.58
2073 3206 0.458669 CATCACCCAAATGCAGAGGC 59.541 55.000 0.00 0.00 41.68 4.70
2074 3207 0.458669 GCATCACCCAAATGCAGAGG 59.541 55.000 3.35 0.00 46.93 3.69
2079 3212 1.806758 GCACGCATCACCCAAATGC 60.807 57.895 0.00 0.00 44.81 3.56
2080 3213 0.038435 TTGCACGCATCACCCAAATG 60.038 50.000 0.00 0.00 0.00 2.32
2081 3214 0.038343 GTTGCACGCATCACCCAAAT 60.038 50.000 0.00 0.00 0.00 2.32
2082 3215 1.361993 GTTGCACGCATCACCCAAA 59.638 52.632 0.00 0.00 0.00 3.28
2083 3216 2.560119 GGTTGCACGCATCACCCAA 61.560 57.895 2.03 0.00 0.00 4.12
2084 3217 2.983030 GGTTGCACGCATCACCCA 60.983 61.111 2.03 0.00 0.00 4.51
2085 3218 2.983030 TGGTTGCACGCATCACCC 60.983 61.111 9.77 1.63 0.00 4.61
2086 3219 1.795170 AAGTGGTTGCACGCATCACC 61.795 55.000 16.99 12.28 33.84 4.02
2087 3220 0.030638 AAAGTGGTTGCACGCATCAC 59.969 50.000 14.36 14.36 33.68 3.06
2088 3221 1.598882 TAAAGTGGTTGCACGCATCA 58.401 45.000 0.00 0.00 0.00 3.07
2089 3222 2.919666 ATAAAGTGGTTGCACGCATC 57.080 45.000 0.00 0.00 0.00 3.91
2090 3223 4.981806 ATAATAAAGTGGTTGCACGCAT 57.018 36.364 0.00 0.00 0.00 4.73
2091 3224 4.775058 AATAATAAAGTGGTTGCACGCA 57.225 36.364 0.00 0.00 0.00 5.24
2092 3225 7.486551 TGAATAAATAATAAAGTGGTTGCACGC 59.513 33.333 0.00 0.00 0.00 5.34
2093 3226 8.794406 GTGAATAAATAATAAAGTGGTTGCACG 58.206 33.333 0.00 0.00 0.00 5.34
2094 3227 9.632807 TGTGAATAAATAATAAAGTGGTTGCAC 57.367 29.630 0.00 0.00 0.00 4.57
2115 3248 9.616156 TGTACTATTTTGTAAGGTCTTTGTGAA 57.384 29.630 0.00 0.00 0.00 3.18
2116 3249 9.787435 ATGTACTATTTTGTAAGGTCTTTGTGA 57.213 29.630 0.00 0.00 0.00 3.58
2122 3255 9.877178 CTTCAGATGTACTATTTTGTAAGGTCT 57.123 33.333 0.00 0.00 0.00 3.85
2123 3256 8.604890 GCTTCAGATGTACTATTTTGTAAGGTC 58.395 37.037 0.00 0.00 0.00 3.85
2124 3257 7.553044 GGCTTCAGATGTACTATTTTGTAAGGT 59.447 37.037 0.00 0.00 0.00 3.50
2125 3258 7.552687 TGGCTTCAGATGTACTATTTTGTAAGG 59.447 37.037 0.00 0.00 0.00 2.69
2126 3259 8.492673 TGGCTTCAGATGTACTATTTTGTAAG 57.507 34.615 0.00 0.00 0.00 2.34
2127 3260 9.109393 GATGGCTTCAGATGTACTATTTTGTAA 57.891 33.333 0.00 0.00 0.00 2.41
2128 3261 8.264347 TGATGGCTTCAGATGTACTATTTTGTA 58.736 33.333 0.00 0.00 0.00 2.41
2129 3262 7.112122 TGATGGCTTCAGATGTACTATTTTGT 58.888 34.615 0.00 0.00 0.00 2.83
2130 3263 7.558161 TGATGGCTTCAGATGTACTATTTTG 57.442 36.000 0.00 0.00 0.00 2.44
2131 3264 8.216423 AGATGATGGCTTCAGATGTACTATTTT 58.784 33.333 9.09 0.00 37.89 1.82
2132 3265 7.743749 AGATGATGGCTTCAGATGTACTATTT 58.256 34.615 9.09 0.00 37.89 1.40
2133 3266 7.313740 AGATGATGGCTTCAGATGTACTATT 57.686 36.000 9.09 0.00 37.89 1.73
2134 3267 6.931790 AGATGATGGCTTCAGATGTACTAT 57.068 37.500 9.09 0.00 37.89 2.12
2135 3268 6.737720 AAGATGATGGCTTCAGATGTACTA 57.262 37.500 9.09 0.00 37.89 1.82
2136 3269 5.627182 AAGATGATGGCTTCAGATGTACT 57.373 39.130 9.09 0.00 37.89 2.73
2137 3270 6.203723 GGTAAAGATGATGGCTTCAGATGTAC 59.796 42.308 9.09 8.67 37.89 2.90
2138 3271 6.291377 GGTAAAGATGATGGCTTCAGATGTA 58.709 40.000 9.09 0.00 37.89 2.29
2139 3272 5.128919 GGTAAAGATGATGGCTTCAGATGT 58.871 41.667 9.09 0.00 37.89 3.06
2140 3273 4.212847 CGGTAAAGATGATGGCTTCAGATG 59.787 45.833 9.09 0.00 37.89 2.90
2141 3274 4.384056 CGGTAAAGATGATGGCTTCAGAT 58.616 43.478 9.09 0.00 37.89 2.90
2142 3275 3.432186 CCGGTAAAGATGATGGCTTCAGA 60.432 47.826 9.09 0.00 37.89 3.27
2143 3276 2.874701 CCGGTAAAGATGATGGCTTCAG 59.125 50.000 9.09 0.00 37.89 3.02
2144 3277 2.917933 CCGGTAAAGATGATGGCTTCA 58.082 47.619 5.47 5.47 39.12 3.02
2145 3278 1.604278 GCCGGTAAAGATGATGGCTTC 59.396 52.381 1.90 0.00 39.38 3.86
2146 3279 1.680338 GCCGGTAAAGATGATGGCTT 58.320 50.000 1.90 0.00 39.38 4.35
2147 3280 0.179018 GGCCGGTAAAGATGATGGCT 60.179 55.000 1.90 0.00 42.11 4.75
2148 3281 0.465460 TGGCCGGTAAAGATGATGGC 60.465 55.000 1.90 0.00 41.72 4.40
2149 3282 2.276732 ATGGCCGGTAAAGATGATGG 57.723 50.000 1.90 0.00 0.00 3.51
2150 3283 3.251729 CAGAATGGCCGGTAAAGATGATG 59.748 47.826 1.90 0.00 0.00 3.07
2151 3284 3.117888 ACAGAATGGCCGGTAAAGATGAT 60.118 43.478 1.90 0.00 43.62 2.45
2152 3285 2.238646 ACAGAATGGCCGGTAAAGATGA 59.761 45.455 1.90 0.00 43.62 2.92
2153 3286 2.643551 ACAGAATGGCCGGTAAAGATG 58.356 47.619 1.90 0.00 43.62 2.90
2154 3287 3.016736 CAACAGAATGGCCGGTAAAGAT 58.983 45.455 1.90 0.00 43.62 2.40
2155 3288 2.432444 CAACAGAATGGCCGGTAAAGA 58.568 47.619 1.90 0.00 43.62 2.52
2156 3289 1.135402 GCAACAGAATGGCCGGTAAAG 60.135 52.381 1.90 0.00 43.62 1.85
2157 3290 0.885196 GCAACAGAATGGCCGGTAAA 59.115 50.000 1.90 0.00 43.62 2.01
2158 3291 0.037590 AGCAACAGAATGGCCGGTAA 59.962 50.000 1.90 0.00 43.62 2.85
2159 3292 0.037590 AAGCAACAGAATGGCCGGTA 59.962 50.000 1.90 0.00 43.62 4.02
2160 3293 0.037590 TAAGCAACAGAATGGCCGGT 59.962 50.000 1.90 0.00 43.62 5.28
2161 3294 0.734889 CTAAGCAACAGAATGGCCGG 59.265 55.000 0.00 0.00 43.62 6.13
2162 3295 1.453155 ACTAAGCAACAGAATGGCCG 58.547 50.000 0.00 0.00 43.62 6.13
2163 3296 2.672195 GCAACTAAGCAACAGAATGGCC 60.672 50.000 0.00 0.00 43.62 5.36
2164 3297 2.030007 TGCAACTAAGCAACAGAATGGC 60.030 45.455 0.00 0.00 42.46 4.40
2165 3298 3.921119 TGCAACTAAGCAACAGAATGG 57.079 42.857 0.00 0.00 42.46 3.16
2178 3311 7.675455 ACGAGTCAAACGGTTAGTGCAACTA 62.675 44.000 0.00 0.00 40.93 2.24
2179 3312 6.989756 ACGAGTCAAACGGTTAGTGCAACT 62.990 45.833 0.00 0.00 42.45 3.16
2180 3313 2.348218 CGAGTCAAACGGTTAGTGCAAC 60.348 50.000 0.00 0.00 36.32 4.17
2181 3314 1.862201 CGAGTCAAACGGTTAGTGCAA 59.138 47.619 0.00 0.00 0.00 4.08
2182 3315 1.202440 ACGAGTCAAACGGTTAGTGCA 60.202 47.619 0.00 0.00 34.93 4.57
2183 3316 1.494824 ACGAGTCAAACGGTTAGTGC 58.505 50.000 0.00 0.00 34.93 4.40
2184 3317 2.653584 CGTACGAGTCAAACGGTTAGTG 59.346 50.000 10.44 0.00 33.13 2.74
2185 3318 2.548057 TCGTACGAGTCAAACGGTTAGT 59.452 45.455 15.28 0.00 37.24 2.24
2186 3319 3.120546 TCTCGTACGAGTCAAACGGTTAG 60.121 47.826 36.67 14.27 42.49 2.34
2187 3320 2.805671 TCTCGTACGAGTCAAACGGTTA 59.194 45.455 36.67 16.68 42.49 2.85
2188 3321 1.603802 TCTCGTACGAGTCAAACGGTT 59.396 47.619 36.67 0.00 42.49 4.44
2189 3322 1.229428 TCTCGTACGAGTCAAACGGT 58.771 50.000 36.67 0.00 42.49 4.83
2190 3323 2.174764 CATCTCGTACGAGTCAAACGG 58.825 52.381 36.67 16.29 42.49 4.44
2191 3324 2.839026 GACATCTCGTACGAGTCAAACG 59.161 50.000 36.67 23.39 42.49 3.60
2200 3333 0.384477 GGCTAGCGACATCTCGTACG 60.384 60.000 9.53 9.53 42.33 3.67
2212 3345 0.384309 TCTTACACGATGGGCTAGCG 59.616 55.000 7.05 7.05 45.27 4.26
2217 3350 5.065988 ACATTATTGTTCTTACACGATGGGC 59.934 40.000 0.00 0.00 32.98 5.36
2259 3392 4.399978 GTGGGAACATAACAAATTCGTCG 58.600 43.478 0.00 0.00 46.14 5.12
2262 3395 3.189702 ACCGTGGGAACATAACAAATTCG 59.810 43.478 0.00 0.00 46.14 3.34
2267 3400 2.496111 GTCACCGTGGGAACATAACAA 58.504 47.619 0.00 0.00 46.14 2.83
2272 3405 0.536460 GTTGGTCACCGTGGGAACAT 60.536 55.000 0.00 0.00 46.14 2.71
2328 3461 3.098774 TGGCCACCATATGACATTTGT 57.901 42.857 0.00 0.00 0.00 2.83
2350 3483 9.206870 CAACAATATGCTAAGGAACAAAAATGT 57.793 29.630 0.00 0.00 0.00 2.71
2358 3491 7.334421 TCTCAACTCAACAATATGCTAAGGAAC 59.666 37.037 0.00 0.00 0.00 3.62
2361 3494 6.820656 ACTCTCAACTCAACAATATGCTAAGG 59.179 38.462 0.00 0.00 0.00 2.69
2362 3495 7.840342 ACTCTCAACTCAACAATATGCTAAG 57.160 36.000 0.00 0.00 0.00 2.18
2370 3503 8.316946 TCATCAGATAACTCTCAACTCAACAAT 58.683 33.333 0.00 0.00 0.00 2.71
2376 3509 8.445275 TCTACTCATCAGATAACTCTCAACTC 57.555 38.462 0.00 0.00 0.00 3.01
2385 3518 9.660180 AGAAAAACCTTCTACTCATCAGATAAC 57.340 33.333 0.00 0.00 0.00 1.89
2391 3524 9.621629 TGTTTAAGAAAAACCTTCTACTCATCA 57.378 29.630 0.00 0.00 0.00 3.07
2394 3527 8.050930 AGGTGTTTAAGAAAAACCTTCTACTCA 58.949 33.333 7.83 0.00 34.88 3.41
2440 3574 9.520204 AGTAGACAACATTTTCATGAAAAGTTG 57.480 29.630 36.68 36.68 44.05 3.16
2444 3578 8.816144 GCAAAGTAGACAACATTTTCATGAAAA 58.184 29.630 30.27 30.27 43.48 2.29
2485 3652 3.072330 TGCATCAGTAGTTCCACCTTCAA 59.928 43.478 0.00 0.00 0.00 2.69
2487 3654 3.334583 TGCATCAGTAGTTCCACCTTC 57.665 47.619 0.00 0.00 0.00 3.46
2520 3687 7.763172 ATGTCATAGAAAATCTCTCGTTCAC 57.237 36.000 0.00 0.00 35.41 3.18
2525 3692 8.864069 AGTGTTATGTCATAGAAAATCTCTCG 57.136 34.615 0.00 0.00 35.41 4.04
2574 4842 4.520492 CCTCAATTATGTTGATGTAGCCCC 59.480 45.833 0.00 0.00 0.00 5.80
2582 4850 9.606631 GAGAGTAAGTTCCTCAATTATGTTGAT 57.393 33.333 0.00 0.00 0.00 2.57
2584 4852 8.043710 AGGAGAGTAAGTTCCTCAATTATGTTG 58.956 37.037 0.00 0.00 39.65 3.33
2633 4901 2.863137 CAACCACCCATTTCGTTTGTTG 59.137 45.455 0.00 0.00 0.00 3.33
2634 4902 2.761208 TCAACCACCCATTTCGTTTGTT 59.239 40.909 0.00 0.00 0.00 2.83
2635 4903 2.100087 GTCAACCACCCATTTCGTTTGT 59.900 45.455 0.00 0.00 0.00 2.83
2636 4904 2.738135 GTCAACCACCCATTTCGTTTG 58.262 47.619 0.00 0.00 0.00 2.93
2637 4905 1.335496 CGTCAACCACCCATTTCGTTT 59.665 47.619 0.00 0.00 0.00 3.60
2641 4909 1.950909 TCAACGTCAACCACCCATTTC 59.049 47.619 0.00 0.00 0.00 2.17
2655 4923 4.139510 TGCTGTGCATGTCAACGT 57.860 50.000 0.00 0.00 31.71 3.99
2668 4936 8.216453 GCAAAAGAACAATGTAGTTTTATGCTG 58.784 33.333 5.60 0.00 31.61 4.41
2669 4937 8.143835 AGCAAAAGAACAATGTAGTTTTATGCT 58.856 29.630 10.99 10.99 35.75 3.79
2670 4938 8.216453 CAGCAAAAGAACAATGTAGTTTTATGC 58.784 33.333 5.60 6.96 33.05 3.14
2672 4940 8.637986 TCCAGCAAAAGAACAATGTAGTTTTAT 58.362 29.630 5.60 0.00 0.00 1.40
2680 4948 4.081198 TGGTTTCCAGCAAAAGAACAATGT 60.081 37.500 0.00 0.00 0.00 2.71
2707 4975 7.584122 TCCACCACAATAAGATCTAGTAGTC 57.416 40.000 0.00 0.00 0.00 2.59
2708 4976 7.399191 TGTTCCACCACAATAAGATCTAGTAGT 59.601 37.037 0.00 0.00 0.00 2.73
2709 4977 7.782049 TGTTCCACCACAATAAGATCTAGTAG 58.218 38.462 0.00 0.00 0.00 2.57
2710 4978 7.727578 TGTTCCACCACAATAAGATCTAGTA 57.272 36.000 0.00 0.00 0.00 1.82
2721 4989 4.158394 GCATGTATCTTGTTCCACCACAAT 59.842 41.667 0.00 0.00 36.08 2.71
2729 4997 6.016860 TGCTAATCATGCATGTATCTTGTTCC 60.017 38.462 25.43 6.51 35.31 3.62
2743 5011 4.952262 TGTTTGTCTCTGCTAATCATGC 57.048 40.909 0.00 0.00 0.00 4.06
2748 5016 7.816031 CCATTTCAATTGTTTGTCTCTGCTAAT 59.184 33.333 5.13 0.00 34.32 1.73
2761 5029 2.522836 TGTGCGCCATTTCAATTGTT 57.477 40.000 4.18 0.00 0.00 2.83
2773 5041 0.938008 GCTAGGTAAAGATGTGCGCC 59.062 55.000 4.18 0.00 0.00 6.53
2780 5048 4.288626 TCAAACAGGGTGCTAGGTAAAGAT 59.711 41.667 0.00 0.00 0.00 2.40
2816 5084 2.368548 AGGCTCAATGGTTTTGGAAACC 59.631 45.455 14.15 14.15 40.67 3.27
2820 5088 0.968405 GCAGGCTCAATGGTTTTGGA 59.032 50.000 0.00 0.00 0.00 3.53
2827 5095 1.340405 ACTTGGTAGCAGGCTCAATGG 60.340 52.381 3.66 0.00 0.00 3.16
2828 5096 2.119801 ACTTGGTAGCAGGCTCAATG 57.880 50.000 3.66 0.00 0.00 2.82
2868 5139 2.418746 CGGAATCTCTGGTCGGTGAAAT 60.419 50.000 0.00 0.00 0.00 2.17
2878 5149 1.601663 GCAGATCGACGGAATCTCTGG 60.602 57.143 10.92 0.00 32.61 3.86
2880 5151 1.393603 TGCAGATCGACGGAATCTCT 58.606 50.000 0.00 0.00 0.00 3.10
2911 5182 6.528423 GCGTATAGATCTTCTTGCAATATCGT 59.472 38.462 0.00 0.00 0.00 3.73
2912 5183 6.749578 AGCGTATAGATCTTCTTGCAATATCG 59.250 38.462 0.00 1.44 0.00 2.92
2913 5184 9.232082 CTAGCGTATAGATCTTCTTGCAATATC 57.768 37.037 0.00 1.48 0.00 1.63
2914 5185 7.704472 GCTAGCGTATAGATCTTCTTGCAATAT 59.296 37.037 0.00 0.00 0.00 1.28
2915 5186 7.030165 GCTAGCGTATAGATCTTCTTGCAATA 58.970 38.462 0.00 0.00 0.00 1.90
2916 5187 5.866633 GCTAGCGTATAGATCTTCTTGCAAT 59.133 40.000 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.