Multiple sequence alignment - TraesCS2A01G494200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G494200 chr2A 100.000 2705 0 0 1 2705 726272052 726274756 0.000000e+00 4996.0
1 TraesCS2A01G494200 chr2A 84.402 936 89 27 1198 2100 726223972 726224883 0.000000e+00 867.0
2 TraesCS2A01G494200 chr2A 84.088 905 79 27 1196 2073 726295897 726296763 0.000000e+00 813.0
3 TraesCS2A01G494200 chr2A 83.092 414 32 19 540 943 726295472 726295857 2.580000e-90 342.0
4 TraesCS2A01G494200 chr2A 86.555 238 27 2 453 686 726223305 726223541 9.610000e-65 257.0
5 TraesCS2A01G494200 chr2A 88.889 135 10 3 682 816 726223722 726223851 7.750000e-36 161.0
6 TraesCS2A01G494200 chr2A 95.946 74 3 0 890 963 726223881 726223954 1.320000e-23 121.0
7 TraesCS2A01G494200 chr2A 86.957 92 8 2 876 963 726202792 726202883 1.710000e-17 100.0
8 TraesCS2A01G494200 chr2A 86.957 92 8 2 876 963 726214229 726214320 1.710000e-17 100.0
9 TraesCS2A01G494200 chr2A 94.737 38 2 0 826 863 726202758 726202795 2.910000e-05 60.2
10 TraesCS2A01G494200 chr2A 94.737 38 2 0 826 863 726214195 726214232 2.910000e-05 60.2
11 TraesCS2A01G494200 chr2D 88.889 1044 68 17 1176 2175 591388626 591389665 0.000000e+00 1242.0
12 TraesCS2A01G494200 chr2D 88.481 981 65 21 1189 2129 591437783 591438755 0.000000e+00 1142.0
13 TraesCS2A01G494200 chr2D 87.871 742 56 14 1189 1898 591548178 591548917 0.000000e+00 841.0
14 TraesCS2A01G494200 chr2D 92.329 365 28 0 1229 1593 591320444 591320808 1.110000e-143 520.0
15 TraesCS2A01G494200 chr2D 88.471 399 43 3 1195 1593 591300862 591301257 1.880000e-131 479.0
16 TraesCS2A01G494200 chr2D 82.576 528 54 17 444 949 591319883 591320394 5.350000e-117 431.0
17 TraesCS2A01G494200 chr2D 85.093 322 18 11 2177 2498 591446900 591447191 4.380000e-78 302.0
18 TraesCS2A01G494200 chr2D 79.577 426 37 18 570 963 591547762 591548169 2.670000e-65 259.0
19 TraesCS2A01G494200 chr2D 81.416 339 34 18 630 963 591388309 591388623 1.610000e-62 250.0
20 TraesCS2A01G494200 chr2D 84.932 219 26 4 427 645 591385854 591386065 5.870000e-52 215.0
21 TraesCS2A01G494200 chr2D 84.951 206 24 3 607 810 591300496 591300696 4.570000e-48 202.0
22 TraesCS2A01G494200 chr2D 77.540 374 57 13 49 403 626651847 626651482 1.640000e-47 200.0
23 TraesCS2A01G494200 chr2D 77.338 278 31 13 686 963 591437529 591437774 4.700000e-28 135.0
24 TraesCS2A01G494200 chr2D 82.963 135 17 1 449 577 591540565 591540699 1.700000e-22 117.0
25 TraesCS2A01G494200 chr2D 72.917 336 66 20 87 402 460994893 460995223 2.870000e-15 93.5
26 TraesCS2A01G494200 chr2B 80.453 972 119 43 1183 2103 717098050 717099001 0.000000e+00 676.0
27 TraesCS2A01G494200 chr2B 89.189 407 39 5 1192 1594 717043451 717043856 1.120000e-138 503.0
28 TraesCS2A01G494200 chr2B 90.769 260 20 4 2241 2498 717045971 717046228 7.170000e-91 344.0
29 TraesCS2A01G494200 chr2B 89.069 247 22 5 2239 2482 717102069 717102313 4.380000e-78 302.0
30 TraesCS2A01G494200 chr2B 87.179 195 18 3 624 816 717097694 717097883 5.870000e-52 215.0
31 TraesCS2A01G494200 chr2B 91.026 156 12 2 2552 2705 717102443 717102598 2.730000e-50 209.0
32 TraesCS2A01G494200 chr2B 86.528 193 16 5 2232 2416 717039996 717040186 1.270000e-48 204.0
33 TraesCS2A01G494200 chr2B 85.128 195 24 2 622 816 717043086 717043275 7.640000e-46 195.0
34 TraesCS2A01G494200 chr2B 75.389 321 55 13 101 405 26451306 26450994 1.690000e-27 134.0
35 TraesCS2A01G494200 chr4A 94.737 209 10 1 961 1169 471663768 471663975 9.340000e-85 324.0
36 TraesCS2A01G494200 chr4A 94.258 209 11 1 961 1169 471662313 471662520 4.350000e-83 318.0
37 TraesCS2A01G494200 chr3A 95.522 201 8 1 962 1162 90481984 90481785 1.210000e-83 320.0
38 TraesCS2A01G494200 chr3A 95.500 200 8 1 963 1162 321099848 321100046 4.350000e-83 318.0
39 TraesCS2A01G494200 chr3A 91.667 48 4 0 98 145 711054636 711054683 1.740000e-07 67.6
40 TraesCS2A01G494200 chr6A 95.050 202 10 0 961 1162 85024779 85024980 4.350000e-83 318.0
41 TraesCS2A01G494200 chr6A 93.839 211 12 1 957 1167 164793546 164793755 1.560000e-82 316.0
42 TraesCS2A01G494200 chr6A 93.839 211 12 1 957 1167 164846565 164846774 1.560000e-82 316.0
43 TraesCS2A01G494200 chr7A 95.050 202 9 1 963 1164 352120989 352120789 1.560000e-82 316.0
44 TraesCS2A01G494200 chr7A 82.566 304 47 3 3 300 3773757 3773454 2.070000e-66 263.0
45 TraesCS2A01G494200 chr5A 94.634 205 10 1 957 1161 661179999 661180202 1.560000e-82 316.0
46 TraesCS2A01G494200 chr5A 77.594 424 64 12 1 402 31576108 31576522 7.530000e-56 228.0
47 TraesCS2A01G494200 chrUn 83.270 263 17 14 2242 2492 317869516 317869763 1.630000e-52 217.0
48 TraesCS2A01G494200 chrUn 84.343 198 21 5 1765 1958 317868281 317868472 4.600000e-43 185.0
49 TraesCS2A01G494200 chrUn 90.625 128 10 2 653 779 317867280 317867406 4.630000e-38 169.0
50 TraesCS2A01G494200 chr6D 75.862 435 68 12 1 405 115644786 115644359 1.280000e-43 187.0
51 TraesCS2A01G494200 chr1D 76.684 386 59 15 45 399 14721291 14721676 4.600000e-43 185.0
52 TraesCS2A01G494200 chr3B 75.837 418 62 12 1 388 167777370 167776962 2.770000e-40 176.0
53 TraesCS2A01G494200 chr3B 72.979 433 59 22 1 400 53144250 53143843 6.160000e-17 99.0
54 TraesCS2A01G494200 chr7D 75.250 400 65 16 26 402 600889706 600890094 2.790000e-35 159.0
55 TraesCS2A01G494200 chr5D 76.849 311 40 15 113 392 417381294 417381603 2.170000e-31 147.0
56 TraesCS2A01G494200 chr7B 72.300 426 90 11 1 405 44266477 44266059 1.020000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G494200 chr2A 726272052 726274756 2704 False 4996.0 4996 100.00000 1 2705 1 chr2A.!!$F1 2704
1 TraesCS2A01G494200 chr2A 726295472 726296763 1291 False 577.5 813 83.59000 540 2073 2 chr2A.!!$F5 1533
2 TraesCS2A01G494200 chr2A 726223305 726224883 1578 False 351.5 867 88.94800 453 2100 4 chr2A.!!$F4 1647
3 TraesCS2A01G494200 chr2D 591437529 591438755 1226 False 638.5 1142 82.90950 686 2129 2 chr2D.!!$F7 1443
4 TraesCS2A01G494200 chr2D 591385854 591389665 3811 False 569.0 1242 85.07900 427 2175 3 chr2D.!!$F6 1748
5 TraesCS2A01G494200 chr2D 591547762 591548917 1155 False 550.0 841 83.72400 570 1898 2 chr2D.!!$F8 1328
6 TraesCS2A01G494200 chr2D 591319883 591320808 925 False 475.5 520 87.45250 444 1593 2 chr2D.!!$F5 1149
7 TraesCS2A01G494200 chr2D 591300496 591301257 761 False 340.5 479 86.71100 607 1593 2 chr2D.!!$F4 986
8 TraesCS2A01G494200 chr2B 717097694 717102598 4904 False 350.5 676 86.93175 624 2705 4 chr2B.!!$F2 2081
9 TraesCS2A01G494200 chr2B 717039996 717046228 6232 False 311.5 503 87.90350 622 2498 4 chr2B.!!$F1 1876
10 TraesCS2A01G494200 chr4A 471662313 471663975 1662 False 321.0 324 94.49750 961 1169 2 chr4A.!!$F1 208

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 385 0.106819 CCCATCTTCCTTGCCCTCTG 60.107 60.0 0.0 0.0 0.0 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2209 10043 0.038159 GTCCTGCTAGCGTGACACTT 60.038 55.0 23.9 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.388499 TCCTCGCCGGTCCTTTGC 62.388 66.667 1.90 0.00 0.00 3.68
22 23 2.600470 GCCGGTCCTTTGCCCTTT 60.600 61.111 1.90 0.00 0.00 3.11
24 25 2.332654 CCGGTCCTTTGCCCTTTCG 61.333 63.158 0.00 0.00 0.00 3.46
25 26 2.332654 CGGTCCTTTGCCCTTTCGG 61.333 63.158 0.00 0.00 0.00 4.30
26 27 1.228459 GGTCCTTTGCCCTTTCGGT 60.228 57.895 0.00 0.00 0.00 4.69
27 28 1.241990 GGTCCTTTGCCCTTTCGGTC 61.242 60.000 0.00 0.00 0.00 4.79
28 29 1.302192 TCCTTTGCCCTTTCGGTCG 60.302 57.895 0.00 0.00 0.00 4.79
30 31 1.966451 CTTTGCCCTTTCGGTCGCT 60.966 57.895 0.00 0.00 0.00 4.93
34 35 4.697756 CCCTTTCGGTCGCTGGCA 62.698 66.667 0.00 0.00 0.00 4.92
35 36 3.423154 CCTTTCGGTCGCTGGCAC 61.423 66.667 0.00 0.00 0.00 5.01
36 37 2.357517 CTTTCGGTCGCTGGCACT 60.358 61.111 0.00 0.00 0.00 4.40
42 43 1.301401 GGTCGCTGGCACTGTTGTA 60.301 57.895 0.00 0.00 0.00 2.41
50 51 3.118454 CACTGTTGTAGGCGGCCG 61.118 66.667 24.05 24.05 0.00 6.13
68 69 3.636231 CGGCAGGAGGTGGGTTGA 61.636 66.667 0.00 0.00 0.00 3.18
69 70 2.971598 CGGCAGGAGGTGGGTTGAT 61.972 63.158 0.00 0.00 0.00 2.57
71 72 1.380302 GCAGGAGGTGGGTTGATGT 59.620 57.895 0.00 0.00 0.00 3.06
72 73 0.678048 GCAGGAGGTGGGTTGATGTC 60.678 60.000 0.00 0.00 0.00 3.06
73 74 0.391661 CAGGAGGTGGGTTGATGTCG 60.392 60.000 0.00 0.00 0.00 4.35
74 75 1.078426 GGAGGTGGGTTGATGTCGG 60.078 63.158 0.00 0.00 0.00 4.79
75 76 1.550130 GGAGGTGGGTTGATGTCGGA 61.550 60.000 0.00 0.00 0.00 4.55
77 78 1.745489 GGTGGGTTGATGTCGGAGC 60.745 63.158 0.00 0.00 0.00 4.70
79 80 2.511600 GGGTTGATGTCGGAGCCG 60.512 66.667 1.74 1.74 41.35 5.52
80 81 2.511600 GGTTGATGTCGGAGCCGG 60.512 66.667 9.29 0.00 40.25 6.13
82 83 1.519455 GTTGATGTCGGAGCCGGAG 60.519 63.158 5.05 0.00 40.25 4.63
97 98 2.128507 GGAGGAGTCGGGCCAGTAG 61.129 68.421 4.39 0.00 0.00 2.57
98 99 1.380112 GAGGAGTCGGGCCAGTAGT 60.380 63.158 4.39 0.00 0.00 2.73
101 102 2.754658 AGTCGGGCCAGTAGTCGG 60.755 66.667 4.39 0.00 0.00 4.79
102 103 2.753043 GTCGGGCCAGTAGTCGGA 60.753 66.667 4.39 0.00 0.00 4.55
103 104 2.439701 TCGGGCCAGTAGTCGGAG 60.440 66.667 4.39 0.00 0.00 4.63
108 109 1.076923 GCCAGTAGTCGGAGGAGGA 60.077 63.158 0.00 0.00 0.00 3.71
110 111 2.030045 GCCAGTAGTCGGAGGAGGAAT 61.030 57.143 0.00 0.00 0.00 3.01
111 112 1.957877 CCAGTAGTCGGAGGAGGAATC 59.042 57.143 0.00 0.00 0.00 2.52
112 113 1.604755 CAGTAGTCGGAGGAGGAATCG 59.395 57.143 0.00 0.00 0.00 3.34
113 114 0.953003 GTAGTCGGAGGAGGAATCGG 59.047 60.000 0.00 0.00 0.00 4.18
115 116 0.466555 AGTCGGAGGAGGAATCGGAG 60.467 60.000 0.00 0.00 0.00 4.63
116 117 0.465824 GTCGGAGGAGGAATCGGAGA 60.466 60.000 0.00 0.00 45.75 3.71
118 119 0.600557 CGGAGGAGGAATCGGAGATG 59.399 60.000 0.00 0.00 45.12 2.90
123 124 3.768757 GAGGAGGAATCGGAGATGATGAT 59.231 47.826 0.00 0.00 45.12 2.45
124 125 3.514706 AGGAGGAATCGGAGATGATGATG 59.485 47.826 0.00 0.00 45.12 3.07
127 128 5.394005 GGAGGAATCGGAGATGATGATGTAG 60.394 48.000 0.00 0.00 45.12 2.74
129 130 3.883830 ATCGGAGATGATGATGTAGCC 57.116 47.619 0.00 0.00 45.12 3.93
130 131 1.895798 TCGGAGATGATGATGTAGCCC 59.104 52.381 0.00 0.00 0.00 5.19
133 134 3.616076 CGGAGATGATGATGTAGCCCTTC 60.616 52.174 0.00 0.00 0.00 3.46
134 135 3.326006 GGAGATGATGATGTAGCCCTTCA 59.674 47.826 0.00 0.00 0.00 3.02
135 136 4.202398 GGAGATGATGATGTAGCCCTTCAA 60.202 45.833 0.00 0.00 31.69 2.69
136 137 4.970711 AGATGATGATGTAGCCCTTCAAG 58.029 43.478 0.00 0.00 31.69 3.02
137 138 2.923121 TGATGATGTAGCCCTTCAAGC 58.077 47.619 0.00 0.00 31.69 4.01
138 139 1.869767 GATGATGTAGCCCTTCAAGCG 59.130 52.381 0.00 0.00 31.69 4.68
141 142 0.745845 ATGTAGCCCTTCAAGCGCTG 60.746 55.000 12.58 5.47 34.03 5.18
142 143 2.109126 GTAGCCCTTCAAGCGCTGG 61.109 63.158 12.58 8.66 34.03 4.85
146 147 1.600636 CCCTTCAAGCGCTGGACAA 60.601 57.895 15.80 0.00 0.00 3.18
147 148 0.962356 CCCTTCAAGCGCTGGACAAT 60.962 55.000 15.80 0.00 0.00 2.71
148 149 0.449388 CCTTCAAGCGCTGGACAATC 59.551 55.000 15.80 0.00 0.00 2.67
149 150 1.159285 CTTCAAGCGCTGGACAATCA 58.841 50.000 15.80 0.00 0.00 2.57
150 151 1.129998 CTTCAAGCGCTGGACAATCAG 59.870 52.381 15.80 4.86 37.79 2.90
151 152 0.674581 TCAAGCGCTGGACAATCAGG 60.675 55.000 12.58 0.00 35.43 3.86
153 154 0.957395 AAGCGCTGGACAATCAGGTG 60.957 55.000 12.58 0.00 35.43 4.00
154 155 1.375908 GCGCTGGACAATCAGGTGA 60.376 57.895 0.00 0.00 35.43 4.02
155 156 0.745845 GCGCTGGACAATCAGGTGAT 60.746 55.000 0.00 0.00 35.43 3.06
158 159 1.681166 GCTGGACAATCAGGTGATGCT 60.681 52.381 0.00 0.00 34.49 3.79
159 160 2.719739 CTGGACAATCAGGTGATGCTT 58.280 47.619 0.00 0.00 34.49 3.91
162 163 0.806868 ACAATCAGGTGATGCTTGCG 59.193 50.000 0.00 0.00 38.35 4.85
163 164 0.524816 CAATCAGGTGATGCTTGCGC 60.525 55.000 0.00 0.00 34.49 6.09
165 166 0.679002 ATCAGGTGATGCTTGCGCTT 60.679 50.000 9.73 0.00 36.97 4.68
169 170 1.513586 GTGATGCTTGCGCTTGAGC 60.514 57.895 19.36 19.36 39.33 4.26
170 171 1.673337 TGATGCTTGCGCTTGAGCT 60.673 52.632 23.97 13.96 39.60 4.09
171 172 1.239296 TGATGCTTGCGCTTGAGCTT 61.239 50.000 23.97 19.72 39.60 3.74
172 173 0.797249 GATGCTTGCGCTTGAGCTTG 60.797 55.000 23.97 3.33 39.60 4.01
173 174 2.126580 GCTTGCGCTTGAGCTTGG 60.127 61.111 19.05 0.00 39.32 3.61
174 175 2.126580 CTTGCGCTTGAGCTTGGC 60.127 61.111 9.73 0.00 39.32 4.52
177 178 4.112341 GCGCTTGAGCTTGGCCAG 62.112 66.667 5.11 1.08 39.32 4.85
179 180 2.684843 CGCTTGAGCTTGGCCAGTC 61.685 63.158 5.11 5.13 39.32 3.51
182 183 3.182590 TTGAGCTTGGCCAGTCGCT 62.183 57.895 21.61 21.61 37.74 4.93
186 187 4.711949 CTTGGCCAGTCGCTGCCT 62.712 66.667 5.11 0.00 37.74 4.75
187 188 4.704833 TTGGCCAGTCGCTGCCTC 62.705 66.667 5.11 0.00 37.74 4.70
202 203 3.775654 CTCCGCCACCTCCCACTC 61.776 72.222 0.00 0.00 0.00 3.51
209 210 2.997897 ACCTCCCACTCGGACTGC 60.998 66.667 0.00 0.00 34.86 4.40
210 211 2.681778 CCTCCCACTCGGACTGCT 60.682 66.667 0.00 0.00 34.86 4.24
212 213 1.979155 CTCCCACTCGGACTGCTCA 60.979 63.158 0.00 0.00 34.86 4.26
215 216 0.824109 CCCACTCGGACTGCTCAATA 59.176 55.000 0.00 0.00 0.00 1.90
216 217 1.471676 CCCACTCGGACTGCTCAATAC 60.472 57.143 0.00 0.00 0.00 1.89
217 218 1.471676 CCACTCGGACTGCTCAATACC 60.472 57.143 0.00 0.00 0.00 2.73
220 221 0.738975 TCGGACTGCTCAATACCGAG 59.261 55.000 0.00 0.00 45.87 4.63
221 222 0.456221 CGGACTGCTCAATACCGAGT 59.544 55.000 0.00 0.00 45.31 4.18
222 223 1.534175 CGGACTGCTCAATACCGAGTC 60.534 57.143 0.00 0.00 45.31 3.36
227 228 2.599082 CTGCTCAATACCGAGTCGAAAC 59.401 50.000 15.64 0.00 35.33 2.78
228 229 2.230508 TGCTCAATACCGAGTCGAAACT 59.769 45.455 15.64 0.00 38.88 2.66
229 230 2.599082 GCTCAATACCGAGTCGAAACTG 59.401 50.000 15.64 6.23 35.28 3.16
231 232 2.230508 TCAATACCGAGTCGAAACTGCT 59.769 45.455 15.64 0.00 35.28 4.24
233 234 2.060326 TACCGAGTCGAAACTGCTTG 57.940 50.000 15.64 0.00 35.28 4.01
234 235 0.600255 ACCGAGTCGAAACTGCTTGG 60.600 55.000 15.64 5.00 39.20 3.61
236 237 1.493311 GAGTCGAAACTGCTTGGCG 59.507 57.895 0.00 0.00 35.28 5.69
239 240 0.657368 GTCGAAACTGCTTGGCGTTG 60.657 55.000 0.00 0.00 0.00 4.10
240 241 0.812014 TCGAAACTGCTTGGCGTTGA 60.812 50.000 0.00 0.00 0.00 3.18
241 242 0.238289 CGAAACTGCTTGGCGTTGAT 59.762 50.000 0.00 0.00 0.00 2.57
246 247 1.372087 CTGCTTGGCGTTGATCCTCC 61.372 60.000 0.00 0.00 0.00 4.30
247 248 1.078143 GCTTGGCGTTGATCCTCCT 60.078 57.895 0.00 0.00 0.00 3.69
251 252 1.522580 GGCGTTGATCCTCCTGAGC 60.523 63.158 0.00 0.00 0.00 4.26
252 253 1.522580 GCGTTGATCCTCCTGAGCC 60.523 63.158 0.00 0.00 0.00 4.70
253 254 1.900351 CGTTGATCCTCCTGAGCCA 59.100 57.895 0.00 0.00 0.00 4.75
255 256 1.539929 CGTTGATCCTCCTGAGCCATC 60.540 57.143 0.00 0.00 0.00 3.51
257 258 1.117749 TGATCCTCCTGAGCCATCGG 61.118 60.000 0.00 0.00 0.00 4.18
275 276 4.873129 CGTCCGTCTCCGCCATGG 62.873 72.222 7.63 7.63 40.09 3.66
276 277 3.771160 GTCCGTCTCCGCCATGGT 61.771 66.667 14.67 0.00 39.52 3.55
277 278 2.043752 TCCGTCTCCGCCATGGTA 60.044 61.111 14.67 0.00 39.52 3.25
278 279 1.683025 TCCGTCTCCGCCATGGTAA 60.683 57.895 14.67 0.00 39.52 2.85
287 288 2.171725 GCCATGGTAAGCGACGGAC 61.172 63.158 14.67 0.00 0.00 4.79
298 299 2.259511 GACGGACGGTACACCCAC 59.740 66.667 0.00 0.00 0.00 4.61
300 301 2.205243 GACGGACGGTACACCCACTC 62.205 65.000 0.00 0.00 0.00 3.51
303 304 0.323725 GGACGGTACACCCACTCCTA 60.324 60.000 0.00 0.00 30.01 2.94
304 305 1.687368 GGACGGTACACCCACTCCTAT 60.687 57.143 0.00 0.00 30.01 2.57
306 307 2.100418 GACGGTACACCCACTCCTATTC 59.900 54.545 0.00 0.00 0.00 1.75
308 309 1.411612 GGTACACCCACTCCTATTCGG 59.588 57.143 0.00 0.00 0.00 4.30
310 311 1.146263 CACCCACTCCTATTCGGGC 59.854 63.158 0.00 0.00 42.97 6.13
312 313 1.146263 CCCACTCCTATTCGGGCAC 59.854 63.158 0.00 0.00 0.00 5.01
349 350 2.590007 CAGGCCGACTGCATAGCC 60.590 66.667 0.00 8.04 46.13 3.93
354 355 3.323136 CGACTGCATAGCCGCGTC 61.323 66.667 4.92 0.00 34.38 5.19
355 356 3.323136 GACTGCATAGCCGCGTCG 61.323 66.667 4.92 0.00 33.35 5.12
376 377 4.129148 GCGGCCCCCATCTTCCTT 62.129 66.667 0.00 0.00 0.00 3.36
377 378 2.124151 CGGCCCCCATCTTCCTTG 60.124 66.667 0.00 0.00 0.00 3.61
378 379 2.442830 GGCCCCCATCTTCCTTGC 60.443 66.667 0.00 0.00 0.00 4.01
379 380 2.442830 GCCCCCATCTTCCTTGCC 60.443 66.667 0.00 0.00 0.00 4.52
381 382 2.319762 CCCCCATCTTCCTTGCCCT 61.320 63.158 0.00 0.00 0.00 5.19
382 383 1.228510 CCCCATCTTCCTTGCCCTC 59.771 63.158 0.00 0.00 0.00 4.30
384 385 0.106819 CCCATCTTCCTTGCCCTCTG 60.107 60.000 0.00 0.00 0.00 3.35
385 386 0.750911 CCATCTTCCTTGCCCTCTGC 60.751 60.000 0.00 0.00 41.77 4.26
387 388 0.918310 ATCTTCCTTGCCCTCTGCCT 60.918 55.000 0.00 0.00 40.16 4.75
389 390 1.539869 TTCCTTGCCCTCTGCCTCT 60.540 57.895 0.00 0.00 40.16 3.69
391 392 2.186384 CTTGCCCTCTGCCTCTCG 59.814 66.667 0.00 0.00 40.16 4.04
392 393 4.087892 TTGCCCTCTGCCTCTCGC 62.088 66.667 0.00 0.00 40.16 5.03
395 396 4.200283 CCCTCTGCCTCTCGCGTC 62.200 72.222 5.77 0.00 42.08 5.19
408 409 3.204827 GCGTCGGGCGGTACTAGA 61.205 66.667 3.44 0.00 41.69 2.43
409 410 2.764314 GCGTCGGGCGGTACTAGAA 61.764 63.158 3.44 0.00 41.69 2.10
411 412 1.435105 GTCGGGCGGTACTAGAACC 59.565 63.158 0.00 0.00 36.08 3.62
412 413 1.754234 TCGGGCGGTACTAGAACCC 60.754 63.158 0.00 0.00 36.03 4.11
413 414 2.053865 CGGGCGGTACTAGAACCCA 61.054 63.158 0.00 0.00 40.87 4.51
417 418 0.828677 GCGGTACTAGAACCCACCAT 59.171 55.000 0.00 0.00 36.03 3.55
418 419 1.472728 GCGGTACTAGAACCCACCATG 60.473 57.143 0.00 0.00 36.03 3.66
419 420 2.104967 CGGTACTAGAACCCACCATGA 58.895 52.381 0.00 0.00 36.03 3.07
420 421 2.498481 CGGTACTAGAACCCACCATGAA 59.502 50.000 0.00 0.00 36.03 2.57
423 424 3.073274 ACTAGAACCCACCATGAAAGC 57.927 47.619 0.00 0.00 0.00 3.51
424 425 2.009774 CTAGAACCCACCATGAAAGCG 58.990 52.381 0.00 0.00 0.00 4.68
425 426 0.400213 AGAACCCACCATGAAAGCGA 59.600 50.000 0.00 0.00 0.00 4.93
430 431 1.335872 CCCACCATGAAAGCGAAACAC 60.336 52.381 0.00 0.00 0.00 3.32
437 438 2.166584 GAAAGCGAAACACGTCCGGG 62.167 60.000 0.00 0.00 44.60 5.73
473 474 1.340502 TGTGAGTTGTTTGACAGCCCA 60.341 47.619 0.00 0.00 28.84 5.36
485 486 1.746615 CAGCCCACGTTGGAGATGG 60.747 63.158 10.41 0.00 40.96 3.51
513 514 9.429359 CTTATGAACATATACTAAGCCAAGGAG 57.571 37.037 0.00 0.00 0.00 3.69
514 515 5.611374 TGAACATATACTAAGCCAAGGAGC 58.389 41.667 0.00 0.00 0.00 4.70
519 521 2.100605 ACTAAGCCAAGGAGCGAAAG 57.899 50.000 0.00 0.00 38.01 2.62
628 4207 1.714794 ATTGCTCAGGAACGAACTCG 58.285 50.000 0.00 0.00 46.33 4.18
690 4470 0.462759 GCTGGGTGCGCTAAGAGATT 60.463 55.000 9.73 0.00 0.00 2.40
702 4483 4.261783 CGCTAAGAGATTGCTCATGTCCTA 60.262 45.833 0.00 0.00 43.81 2.94
810 4597 1.391933 CCGATCTCATCCCGGTGTCA 61.392 60.000 0.00 0.00 38.55 3.58
865 4684 1.532794 TTTGCGCCAACCCCAAGAT 60.533 52.632 4.18 0.00 0.00 2.40
874 4693 2.488891 CCAACCCCAAGATGACACTGAA 60.489 50.000 0.00 0.00 0.00 3.02
963 4817 2.664851 CGCACCTCGCAACCAAGA 60.665 61.111 0.00 0.00 42.60 3.02
964 4818 2.671177 CGCACCTCGCAACCAAGAG 61.671 63.158 0.00 0.00 42.60 2.85
1044 4898 2.386661 ATACCGAGACTTGCCAACTG 57.613 50.000 0.00 0.00 0.00 3.16
1047 4901 1.414919 ACCGAGACTTGCCAACTGTTA 59.585 47.619 0.00 0.00 0.00 2.41
1091 4945 2.335316 ACAACTCGTAGCCAACCAAA 57.665 45.000 0.00 0.00 0.00 3.28
1094 4948 4.391155 ACAACTCGTAGCCAACCAAATAA 58.609 39.130 0.00 0.00 0.00 1.40
1108 4962 7.066766 GCCAACCAAATAATTGCCAATATTTGA 59.933 33.333 21.18 0.00 40.43 2.69
1169 5023 5.404946 CAAACCAATTATGCTCCAAGTCTG 58.595 41.667 0.00 0.00 0.00 3.51
1170 5024 3.019564 ACCAATTATGCTCCAAGTCTGC 58.980 45.455 0.00 0.00 0.00 4.26
1171 5025 2.360165 CCAATTATGCTCCAAGTCTGCC 59.640 50.000 0.00 0.00 0.00 4.85
1173 5027 2.877097 TTATGCTCCAAGTCTGCCAA 57.123 45.000 0.00 0.00 0.00 4.52
1174 5028 2.408271 TATGCTCCAAGTCTGCCAAG 57.592 50.000 0.00 0.00 0.00 3.61
1175 5029 0.403271 ATGCTCCAAGTCTGCCAAGT 59.597 50.000 0.00 0.00 0.00 3.16
1176 5030 0.535780 TGCTCCAAGTCTGCCAAGTG 60.536 55.000 0.00 0.00 0.00 3.16
1177 5031 1.860484 GCTCCAAGTCTGCCAAGTGC 61.860 60.000 0.00 0.00 41.77 4.40
1178 5032 1.228245 TCCAAGTCTGCCAAGTGCC 60.228 57.895 0.00 0.00 40.16 5.01
1179 5033 2.620112 CCAAGTCTGCCAAGTGCCG 61.620 63.158 0.00 0.00 40.16 5.69
1186 5040 4.021925 GCCAAGTGCCGAGTCCCT 62.022 66.667 0.00 0.00 0.00 4.20
1569 5449 4.779733 TCCCACTCCGAGGAGCCC 62.780 72.222 18.37 0.00 45.54 5.19
1653 5578 2.028190 CGCGGCATCGAAGGATCT 59.972 61.111 0.00 0.00 39.00 2.75
1660 5585 0.103026 CATCGAAGGATCTGGCGACA 59.897 55.000 0.00 0.00 35.44 4.35
1760 5703 1.632046 GCCGAAACGCTGATCCGAAA 61.632 55.000 0.00 0.00 0.00 3.46
1810 5758 3.047280 GGCAATCGGACACGCACA 61.047 61.111 0.00 0.00 40.69 4.57
1815 5763 1.999735 CAATCGGACACGCACATACTT 59.000 47.619 0.00 0.00 40.69 2.24
1825 5780 1.089920 GCACATACTTGAGCTGGGTG 58.910 55.000 0.00 0.00 36.62 4.61
1874 5847 3.340814 ACTGATTGAAGAAGGCGACAT 57.659 42.857 0.00 0.00 0.00 3.06
1899 5916 5.930837 TTTTGGGATTGTTTTCTCTGTGT 57.069 34.783 0.00 0.00 0.00 3.72
1900 5917 7.411486 TTTTTGGGATTGTTTTCTCTGTGTA 57.589 32.000 0.00 0.00 0.00 2.90
1901 5918 7.411486 TTTTGGGATTGTTTTCTCTGTGTAA 57.589 32.000 0.00 0.00 0.00 2.41
1902 5919 7.595819 TTTGGGATTGTTTTCTCTGTGTAAT 57.404 32.000 0.00 0.00 0.00 1.89
1906 5923 7.175990 TGGGATTGTTTTCTCTGTGTAATAACC 59.824 37.037 0.00 0.00 0.00 2.85
1921 5947 6.198591 GTGTAATAACCATTCTACTCGTCTGC 59.801 42.308 0.00 0.00 0.00 4.26
1959 5996 8.219105 CCGAGGCATACGAGTAAATTAATTAAC 58.781 37.037 0.01 0.00 0.00 2.01
1960 5997 8.975439 CGAGGCATACGAGTAAATTAATTAACT 58.025 33.333 0.01 0.00 0.00 2.24
1990 6043 6.605849 AGATTGATCGATTGTTCTTGTTGTG 58.394 36.000 0.00 0.00 0.00 3.33
2010 6068 5.398169 TGTGCATGGAATTTGTTATCGTTC 58.602 37.500 0.00 0.00 0.00 3.95
2031 6094 2.604462 CGTGATTCATGCATGTCTTCGA 59.396 45.455 25.43 2.81 0.00 3.71
2100 6351 6.091986 GCTTTTCCGAAATTTAATCATTGGCA 59.908 34.615 0.00 0.00 0.00 4.92
2102 6353 7.536895 TTTCCGAAATTTAATCATTGGCATG 57.463 32.000 0.00 0.00 0.00 4.06
2177 6467 8.076178 GCACTCTCTTTAAAGAAAACATTAGCA 58.924 33.333 18.25 0.00 34.03 3.49
2178 6468 9.604626 CACTCTCTTTAAAGAAAACATTAGCAG 57.395 33.333 18.25 3.34 34.03 4.24
2180 6470 7.593825 TCTCTTTAAAGAAAACATTAGCAGGC 58.406 34.615 18.25 0.00 34.03 4.85
2181 6471 7.448469 TCTCTTTAAAGAAAACATTAGCAGGCT 59.552 33.333 18.25 0.00 34.03 4.58
2182 6472 8.630054 TCTTTAAAGAAAACATTAGCAGGCTA 57.370 30.769 15.57 0.00 30.73 3.93
2183 6473 8.730680 TCTTTAAAGAAAACATTAGCAGGCTAG 58.269 33.333 15.57 0.00 30.73 3.42
2184 6474 4.972514 AAGAAAACATTAGCAGGCTAGC 57.027 40.909 6.04 6.04 0.00 3.42
2187 6477 5.934781 AGAAAACATTAGCAGGCTAGCTAT 58.065 37.500 15.72 0.30 45.72 2.97
2189 6479 3.971245 ACATTAGCAGGCTAGCTATCC 57.029 47.619 15.72 5.43 45.72 2.59
2190 6480 3.242867 ACATTAGCAGGCTAGCTATCCA 58.757 45.455 15.72 5.72 45.72 3.41
2191 6481 3.260380 ACATTAGCAGGCTAGCTATCCAG 59.740 47.826 15.72 8.91 45.72 3.86
2195 10029 1.967066 GCAGGCTAGCTATCCAGAGAA 59.033 52.381 15.72 0.00 0.00 2.87
2207 10041 7.341805 AGCTATCCAGAGAATTAGCTTGAAAA 58.658 34.615 0.00 0.00 43.61 2.29
2209 10043 7.066284 GCTATCCAGAGAATTAGCTTGAAAACA 59.934 37.037 0.00 0.00 35.34 2.83
2210 10044 7.765695 ATCCAGAGAATTAGCTTGAAAACAA 57.234 32.000 0.00 0.00 0.00 2.83
2212 10046 6.772716 TCCAGAGAATTAGCTTGAAAACAAGT 59.227 34.615 10.82 2.45 34.81 3.16
2213 10047 6.860023 CCAGAGAATTAGCTTGAAAACAAGTG 59.140 38.462 10.82 0.14 34.81 3.16
2214 10048 7.420800 CAGAGAATTAGCTTGAAAACAAGTGT 58.579 34.615 10.82 3.10 34.81 3.55
2215 10049 7.589221 CAGAGAATTAGCTTGAAAACAAGTGTC 59.411 37.037 10.82 0.00 34.81 3.67
2216 10050 7.283127 AGAGAATTAGCTTGAAAACAAGTGTCA 59.717 33.333 10.82 0.00 34.81 3.58
2217 10051 7.196331 AGAATTAGCTTGAAAACAAGTGTCAC 58.804 34.615 10.82 0.00 34.81 3.67
2218 10052 3.405170 AGCTTGAAAACAAGTGTCACG 57.595 42.857 10.82 0.00 34.81 4.35
2219 10053 1.846175 GCTTGAAAACAAGTGTCACGC 59.154 47.619 10.82 1.67 34.81 5.34
2220 10054 2.477863 GCTTGAAAACAAGTGTCACGCT 60.478 45.455 10.82 0.00 34.65 5.07
2221 10055 3.242608 GCTTGAAAACAAGTGTCACGCTA 60.243 43.478 10.82 0.00 34.65 4.26
2222 10056 4.518217 CTTGAAAACAAGTGTCACGCTAG 58.482 43.478 0.00 0.00 0.00 3.42
2223 10057 2.286833 TGAAAACAAGTGTCACGCTAGC 59.713 45.455 4.06 4.06 0.00 3.42
2224 10058 1.948104 AAACAAGTGTCACGCTAGCA 58.052 45.000 16.45 0.00 0.00 3.49
2225 10059 1.502231 AACAAGTGTCACGCTAGCAG 58.498 50.000 16.45 10.16 0.00 4.24
2226 10060 0.319900 ACAAGTGTCACGCTAGCAGG 60.320 55.000 16.45 5.87 0.00 4.85
2227 10061 0.038251 CAAGTGTCACGCTAGCAGGA 60.038 55.000 16.45 8.43 0.00 3.86
2228 10062 0.038159 AAGTGTCACGCTAGCAGGAC 60.038 55.000 22.38 22.38 0.00 3.85
2229 10063 0.896019 AGTGTCACGCTAGCAGGACT 60.896 55.000 26.61 15.88 0.00 3.85
2230 10064 0.809385 GTGTCACGCTAGCAGGACTA 59.191 55.000 26.61 15.68 0.00 2.59
2231 10065 0.809385 TGTCACGCTAGCAGGACTAC 59.191 55.000 26.61 12.64 0.00 2.73
2232 10066 0.809385 GTCACGCTAGCAGGACTACA 59.191 55.000 22.05 0.00 0.00 2.74
2233 10067 1.201647 GTCACGCTAGCAGGACTACAA 59.798 52.381 22.05 0.00 0.00 2.41
2234 10068 2.100197 TCACGCTAGCAGGACTACAAT 58.900 47.619 16.45 0.00 0.00 2.71
2235 10069 2.496070 TCACGCTAGCAGGACTACAATT 59.504 45.455 16.45 0.00 0.00 2.32
2236 10070 3.697542 TCACGCTAGCAGGACTACAATTA 59.302 43.478 16.45 0.00 0.00 1.40
2237 10071 4.341235 TCACGCTAGCAGGACTACAATTAT 59.659 41.667 16.45 0.00 0.00 1.28
2311 10146 1.710809 AGGTGGACTGGTTTTAGGCAT 59.289 47.619 0.00 0.00 0.00 4.40
2333 10169 1.580893 CATGCGTGCAATCCGAACG 60.581 57.895 0.00 0.00 40.22 3.95
2337 10173 1.058057 GCGTGCAATCCGAACGAAAC 61.058 55.000 0.00 0.00 39.64 2.78
2339 10175 0.872388 GTGCAATCCGAACGAAACCT 59.128 50.000 0.00 0.00 0.00 3.50
2340 10176 1.136057 GTGCAATCCGAACGAAACCTC 60.136 52.381 0.00 0.00 0.00 3.85
2348 10184 3.061322 CCGAACGAAACCTCACATTACA 58.939 45.455 0.00 0.00 0.00 2.41
2365 10201 8.100164 TCACATTACATGTTGATTAGGAACTCA 58.900 33.333 2.30 0.00 42.70 3.41
2374 10210 1.438651 TTAGGAACTCATGCACGTGC 58.561 50.000 33.11 33.11 41.75 5.34
2405 10241 2.507339 AAAAACAGGACATGCAACGG 57.493 45.000 0.00 0.00 0.00 4.44
2436 10273 3.063510 TGCCAGAATCTCAACCTCTTG 57.936 47.619 0.00 0.00 0.00 3.02
2498 10428 0.179100 CAGATCTACACACCGGCCAG 60.179 60.000 0.00 0.00 0.00 4.85
2500 10430 2.925162 GATCTACACACCGGCCAGGC 62.925 65.000 1.26 1.26 46.52 4.85
2528 10458 5.035443 GCCATACGCTATTCTTATCTACCG 58.965 45.833 0.00 0.00 0.00 4.02
2529 10459 5.163683 GCCATACGCTATTCTTATCTACCGA 60.164 44.000 0.00 0.00 0.00 4.69
2530 10460 6.459848 GCCATACGCTATTCTTATCTACCGAT 60.460 42.308 0.00 0.00 0.00 4.18
2531 10461 7.133513 CCATACGCTATTCTTATCTACCGATC 58.866 42.308 0.00 0.00 0.00 3.69
2532 10462 5.564048 ACGCTATTCTTATCTACCGATCC 57.436 43.478 0.00 0.00 0.00 3.36
2533 10463 5.008331 ACGCTATTCTTATCTACCGATCCA 58.992 41.667 0.00 0.00 0.00 3.41
2534 10464 5.124138 ACGCTATTCTTATCTACCGATCCAG 59.876 44.000 0.00 0.00 0.00 3.86
2535 10465 5.344884 GCTATTCTTATCTACCGATCCAGC 58.655 45.833 0.00 0.00 0.00 4.85
2536 10466 3.917329 TTCTTATCTACCGATCCAGCG 57.083 47.619 0.00 0.00 0.00 5.18
2537 10467 2.860009 TCTTATCTACCGATCCAGCGT 58.140 47.619 0.00 0.00 0.00 5.07
2538 10468 2.812591 TCTTATCTACCGATCCAGCGTC 59.187 50.000 0.00 0.00 0.00 5.19
2539 10469 2.265589 TATCTACCGATCCAGCGTCA 57.734 50.000 0.00 0.00 0.00 4.35
2540 10470 0.955178 ATCTACCGATCCAGCGTCAG 59.045 55.000 0.00 0.00 0.00 3.51
2541 10471 0.107361 TCTACCGATCCAGCGTCAGA 60.107 55.000 0.00 0.00 0.00 3.27
2542 10472 0.309302 CTACCGATCCAGCGTCAGAG 59.691 60.000 0.00 0.00 0.00 3.35
2543 10473 0.107361 TACCGATCCAGCGTCAGAGA 60.107 55.000 0.00 0.00 0.00 3.10
2544 10474 0.753479 ACCGATCCAGCGTCAGAGAT 60.753 55.000 0.00 0.00 0.00 2.75
2545 10475 0.039617 CCGATCCAGCGTCAGAGATC 60.040 60.000 0.00 0.00 33.34 2.75
2546 10476 3.470520 GATCCAGCGTCAGAGATCG 57.529 57.895 0.00 0.00 0.00 3.69
2547 10477 0.039617 GATCCAGCGTCAGAGATCGG 60.040 60.000 0.00 0.00 0.00 4.18
2548 10478 1.459455 ATCCAGCGTCAGAGATCGGG 61.459 60.000 0.00 0.00 0.00 5.14
2549 10479 2.418910 CCAGCGTCAGAGATCGGGT 61.419 63.158 0.00 0.00 0.00 5.28
2550 10480 1.226802 CAGCGTCAGAGATCGGGTG 60.227 63.158 0.00 0.00 0.00 4.61
2551 10481 1.378646 AGCGTCAGAGATCGGGTGA 60.379 57.895 0.00 0.00 0.00 4.02
2552 10482 0.965866 AGCGTCAGAGATCGGGTGAA 60.966 55.000 0.00 0.00 0.00 3.18
2553 10483 0.108804 GCGTCAGAGATCGGGTGAAA 60.109 55.000 0.00 0.00 0.00 2.69
2554 10484 1.630148 CGTCAGAGATCGGGTGAAAC 58.370 55.000 0.00 0.00 0.00 2.78
2555 10485 1.067846 CGTCAGAGATCGGGTGAAACA 60.068 52.381 0.00 0.00 39.98 2.83
2594 10524 1.402613 AGGCAACCGTAACACACAAAC 59.597 47.619 0.00 0.00 37.17 2.93
2595 10525 1.402613 GGCAACCGTAACACACAAACT 59.597 47.619 0.00 0.00 0.00 2.66
2596 10526 2.446282 GCAACCGTAACACACAAACTG 58.554 47.619 0.00 0.00 0.00 3.16
2597 10527 2.159490 GCAACCGTAACACACAAACTGT 60.159 45.455 0.00 0.00 0.00 3.55
2599 10529 4.092816 CAACCGTAACACACAAACTGTTC 58.907 43.478 0.00 0.00 33.79 3.18
2600 10530 3.336468 ACCGTAACACACAAACTGTTCA 58.664 40.909 0.00 0.00 33.79 3.18
2601 10531 3.942748 ACCGTAACACACAAACTGTTCAT 59.057 39.130 0.00 0.00 33.79 2.57
2602 10532 4.201871 ACCGTAACACACAAACTGTTCATG 60.202 41.667 0.00 0.00 33.79 3.07
2604 10534 4.034626 CGTAACACACAAACTGTTCATGGA 59.965 41.667 0.00 0.00 33.79 3.41
2607 10537 3.627577 ACACACAAACTGTTCATGGAGTC 59.372 43.478 0.00 0.00 0.00 3.36
2617 10549 5.418840 ACTGTTCATGGAGTCTGTTGTTTTT 59.581 36.000 0.00 0.00 0.00 1.94
2630 10562 2.979813 GTTGTTTTTACATGCCTCTGCG 59.020 45.455 0.00 0.00 41.78 5.18
2643 10575 2.694065 TCTGCGTGCAGATATTGGC 58.306 52.632 19.99 0.00 46.80 4.52
2652 10584 1.198637 GCAGATATTGGCGCTGATTCC 59.801 52.381 7.64 0.00 0.00 3.01
2681 10613 7.377928 GTCCAATCTTGAATGCATTTTCTATCG 59.622 37.037 14.33 1.18 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.923864 AACAGTGCCAGCGACCGA 61.924 61.111 0.00 0.00 0.00 4.69
24 25 1.291877 CTACAACAGTGCCAGCGACC 61.292 60.000 0.00 0.00 0.00 4.79
25 26 1.291877 CCTACAACAGTGCCAGCGAC 61.292 60.000 0.00 0.00 0.00 5.19
26 27 1.005037 CCTACAACAGTGCCAGCGA 60.005 57.895 0.00 0.00 0.00 4.93
27 28 2.680913 GCCTACAACAGTGCCAGCG 61.681 63.158 0.00 0.00 0.00 5.18
28 29 2.680913 CGCCTACAACAGTGCCAGC 61.681 63.158 0.00 0.00 0.00 4.85
30 31 2.031919 CCGCCTACAACAGTGCCA 59.968 61.111 0.00 0.00 0.00 4.92
51 52 2.971598 ATCAACCCACCTCCTGCCG 61.972 63.158 0.00 0.00 0.00 5.69
52 53 1.379044 CATCAACCCACCTCCTGCC 60.379 63.158 0.00 0.00 0.00 4.85
53 54 0.678048 GACATCAACCCACCTCCTGC 60.678 60.000 0.00 0.00 0.00 4.85
54 55 0.391661 CGACATCAACCCACCTCCTG 60.392 60.000 0.00 0.00 0.00 3.86
59 60 1.745489 GCTCCGACATCAACCCACC 60.745 63.158 0.00 0.00 0.00 4.61
60 61 1.745489 GGCTCCGACATCAACCCAC 60.745 63.158 0.00 0.00 0.00 4.61
61 62 2.668632 GGCTCCGACATCAACCCA 59.331 61.111 0.00 0.00 0.00 4.51
63 64 2.511600 CCGGCTCCGACATCAACC 60.512 66.667 10.28 0.00 42.83 3.77
64 65 1.519455 CTCCGGCTCCGACATCAAC 60.519 63.158 10.28 0.00 42.83 3.18
65 66 2.721167 CCTCCGGCTCCGACATCAA 61.721 63.158 10.28 0.00 42.83 2.57
67 68 2.833582 TCCTCCGGCTCCGACATC 60.834 66.667 10.28 0.00 42.83 3.06
68 69 2.835431 CTCCTCCGGCTCCGACAT 60.835 66.667 10.28 0.00 42.83 3.06
69 70 4.361971 ACTCCTCCGGCTCCGACA 62.362 66.667 10.28 0.00 42.83 4.35
79 80 2.043248 TACTGGCCCGACTCCTCC 60.043 66.667 0.00 0.00 0.00 4.30
80 81 1.380112 ACTACTGGCCCGACTCCTC 60.380 63.158 0.00 0.00 0.00 3.71
82 83 2.772691 CGACTACTGGCCCGACTCC 61.773 68.421 0.00 0.00 0.00 3.85
85 86 2.753043 TCCGACTACTGGCCCGAC 60.753 66.667 0.00 0.00 0.00 4.79
87 88 3.528370 CCTCCGACTACTGGCCCG 61.528 72.222 0.00 0.00 0.00 6.13
89 90 2.128507 CCTCCTCCGACTACTGGCC 61.129 68.421 0.00 0.00 0.00 5.36
90 91 0.683504 TTCCTCCTCCGACTACTGGC 60.684 60.000 0.00 0.00 0.00 4.85
93 94 1.477195 CCGATTCCTCCTCCGACTACT 60.477 57.143 0.00 0.00 0.00 2.57
97 98 0.465824 TCTCCGATTCCTCCTCCGAC 60.466 60.000 0.00 0.00 0.00 4.79
98 99 0.478942 ATCTCCGATTCCTCCTCCGA 59.521 55.000 0.00 0.00 0.00 4.55
101 102 3.161067 TCATCATCTCCGATTCCTCCTC 58.839 50.000 0.00 0.00 0.00 3.71
102 103 3.251016 TCATCATCTCCGATTCCTCCT 57.749 47.619 0.00 0.00 0.00 3.69
103 104 3.260380 ACATCATCATCTCCGATTCCTCC 59.740 47.826 0.00 0.00 0.00 4.30
108 109 3.055530 GGGCTACATCATCATCTCCGATT 60.056 47.826 0.00 0.00 0.00 3.34
110 111 1.895798 GGGCTACATCATCATCTCCGA 59.104 52.381 0.00 0.00 0.00 4.55
111 112 1.898472 AGGGCTACATCATCATCTCCG 59.102 52.381 0.00 0.00 0.00 4.63
112 113 3.326006 TGAAGGGCTACATCATCATCTCC 59.674 47.826 0.00 0.00 0.00 3.71
113 114 4.613925 TGAAGGGCTACATCATCATCTC 57.386 45.455 0.00 0.00 0.00 2.75
115 116 3.501445 GCTTGAAGGGCTACATCATCATC 59.499 47.826 0.00 0.00 0.00 2.92
116 117 3.484407 GCTTGAAGGGCTACATCATCAT 58.516 45.455 0.00 0.00 0.00 2.45
118 119 1.869767 CGCTTGAAGGGCTACATCATC 59.130 52.381 0.00 0.00 0.00 2.92
129 130 0.449388 GATTGTCCAGCGCTTGAAGG 59.551 55.000 13.43 9.10 0.00 3.46
130 131 1.129998 CTGATTGTCCAGCGCTTGAAG 59.870 52.381 13.43 2.73 0.00 3.02
133 134 0.957395 ACCTGATTGTCCAGCGCTTG 60.957 55.000 7.50 3.96 32.97 4.01
134 135 0.957395 CACCTGATTGTCCAGCGCTT 60.957 55.000 7.50 0.00 32.97 4.68
135 136 1.376424 CACCTGATTGTCCAGCGCT 60.376 57.895 2.64 2.64 32.97 5.92
136 137 0.745845 ATCACCTGATTGTCCAGCGC 60.746 55.000 0.00 0.00 32.97 5.92
137 138 1.012086 CATCACCTGATTGTCCAGCG 58.988 55.000 0.00 0.00 32.97 5.18
138 139 0.737219 GCATCACCTGATTGTCCAGC 59.263 55.000 0.00 0.00 32.97 4.85
162 163 2.684843 CGACTGGCCAAGCTCAAGC 61.685 63.158 7.01 0.00 42.49 4.01
163 164 2.684843 GCGACTGGCCAAGCTCAAG 61.685 63.158 7.01 0.00 34.80 3.02
165 166 3.630013 AGCGACTGGCCAAGCTCA 61.630 61.111 20.37 0.00 45.17 4.26
195 196 0.904865 ATTGAGCAGTCCGAGTGGGA 60.905 55.000 5.37 0.00 44.68 4.37
196 197 0.824109 TATTGAGCAGTCCGAGTGGG 59.176 55.000 5.37 0.00 35.24 4.61
201 202 0.738975 CTCGGTATTGAGCAGTCCGA 59.261 55.000 0.00 0.00 46.14 4.55
202 203 0.456221 ACTCGGTATTGAGCAGTCCG 59.544 55.000 0.00 0.00 39.68 4.79
205 206 1.460504 TCGACTCGGTATTGAGCAGT 58.539 50.000 0.00 0.00 39.68 4.40
209 210 2.599082 GCAGTTTCGACTCGGTATTGAG 59.401 50.000 0.00 0.00 41.86 3.02
210 211 2.230508 AGCAGTTTCGACTCGGTATTGA 59.769 45.455 0.00 0.00 0.00 2.57
212 213 2.993899 CAAGCAGTTTCGACTCGGTATT 59.006 45.455 0.00 0.00 0.00 1.89
215 216 0.600255 CCAAGCAGTTTCGACTCGGT 60.600 55.000 0.00 0.00 0.00 4.69
216 217 1.901650 GCCAAGCAGTTTCGACTCGG 61.902 60.000 0.00 0.00 0.00 4.63
217 218 1.493311 GCCAAGCAGTTTCGACTCG 59.507 57.895 0.00 0.00 0.00 4.18
219 220 0.814010 AACGCCAAGCAGTTTCGACT 60.814 50.000 0.00 0.00 0.00 4.18
220 221 0.657368 CAACGCCAAGCAGTTTCGAC 60.657 55.000 0.00 0.00 0.00 4.20
221 222 0.812014 TCAACGCCAAGCAGTTTCGA 60.812 50.000 0.00 0.00 0.00 3.71
222 223 0.238289 ATCAACGCCAAGCAGTTTCG 59.762 50.000 0.00 0.00 0.00 3.46
227 228 1.372087 GGAGGATCAACGCCAAGCAG 61.372 60.000 0.00 0.00 36.25 4.24
228 229 1.377202 GGAGGATCAACGCCAAGCA 60.377 57.895 0.00 0.00 36.25 3.91
229 230 1.078143 AGGAGGATCAACGCCAAGC 60.078 57.895 0.00 0.00 36.25 4.01
231 232 0.250234 CTCAGGAGGATCAACGCCAA 59.750 55.000 0.00 0.00 36.25 4.52
233 234 1.522580 GCTCAGGAGGATCAACGCC 60.523 63.158 0.00 0.00 36.25 5.68
234 235 1.522580 GGCTCAGGAGGATCAACGC 60.523 63.158 0.00 0.00 36.25 4.84
236 237 1.539929 CGATGGCTCAGGAGGATCAAC 60.540 57.143 0.00 0.00 36.25 3.18
239 240 1.670590 CCGATGGCTCAGGAGGATC 59.329 63.158 0.00 0.00 0.00 3.36
240 241 2.515071 GCCGATGGCTCAGGAGGAT 61.515 63.158 0.00 0.00 46.69 3.24
241 242 3.157252 GCCGATGGCTCAGGAGGA 61.157 66.667 0.00 0.00 46.69 3.71
263 264 1.883084 CGCTTACCATGGCGGAGAC 60.883 63.158 13.04 3.30 46.42 3.36
269 270 2.171725 GTCCGTCGCTTACCATGGC 61.172 63.158 13.04 0.00 0.00 4.40
270 271 1.876714 CGTCCGTCGCTTACCATGG 60.877 63.158 11.19 11.19 0.00 3.66
271 272 1.876714 CCGTCCGTCGCTTACCATG 60.877 63.158 0.00 0.00 38.35 3.66
273 274 1.673993 TACCGTCCGTCGCTTACCA 60.674 57.895 0.00 0.00 38.35 3.25
275 276 0.794605 GTGTACCGTCCGTCGCTTAC 60.795 60.000 0.00 0.00 38.35 2.34
276 277 1.501741 GTGTACCGTCCGTCGCTTA 59.498 57.895 0.00 0.00 38.35 3.09
277 278 2.256461 GTGTACCGTCCGTCGCTT 59.744 61.111 0.00 0.00 38.35 4.68
278 279 3.741476 GGTGTACCGTCCGTCGCT 61.741 66.667 0.00 0.00 38.35 4.93
281 282 2.205243 GAGTGGGTGTACCGTCCGTC 62.205 65.000 0.00 0.00 44.64 4.79
283 284 2.570181 GAGTGGGTGTACCGTCCG 59.430 66.667 0.00 0.00 44.64 4.79
284 285 0.323725 TAGGAGTGGGTGTACCGTCC 60.324 60.000 7.35 7.35 44.64 4.79
287 288 1.066605 CGAATAGGAGTGGGTGTACCG 59.933 57.143 0.00 0.00 44.64 4.02
291 292 1.623542 GCCCGAATAGGAGTGGGTGT 61.624 60.000 0.00 0.00 45.00 4.16
332 333 2.590007 GGCTATGCAGTCGGCCTG 60.590 66.667 0.00 0.00 43.89 4.85
333 334 4.227134 CGGCTATGCAGTCGGCCT 62.227 66.667 16.18 0.00 46.20 5.19
360 361 2.124151 CAAGGAAGATGGGGGCCG 60.124 66.667 0.00 0.00 0.00 6.13
363 364 2.280079 GGGCAAGGAAGATGGGGG 59.720 66.667 0.00 0.00 0.00 5.40
366 367 0.750911 GCAGAGGGCAAGGAAGATGG 60.751 60.000 0.00 0.00 43.97 3.51
367 368 2.791170 GCAGAGGGCAAGGAAGATG 58.209 57.895 0.00 0.00 43.97 2.90
378 379 4.200283 GACGCGAGAGGCAGAGGG 62.200 72.222 15.93 0.00 43.84 4.30
379 380 4.544689 CGACGCGAGAGGCAGAGG 62.545 72.222 15.93 0.00 43.84 3.69
391 392 2.764314 TTCTAGTACCGCCCGACGC 61.764 63.158 0.00 0.00 41.76 5.19
392 393 1.063166 GTTCTAGTACCGCCCGACG 59.937 63.158 0.00 0.00 43.15 5.12
393 394 1.435105 GGTTCTAGTACCGCCCGAC 59.565 63.158 2.42 0.00 0.00 4.79
395 396 2.053865 TGGGTTCTAGTACCGCCCG 61.054 63.158 11.95 0.00 42.10 6.13
400 401 4.514401 CTTTCATGGTGGGTTCTAGTACC 58.486 47.826 9.97 9.97 37.47 3.34
402 403 3.369052 CGCTTTCATGGTGGGTTCTAGTA 60.369 47.826 0.00 0.00 0.00 1.82
403 404 2.615493 CGCTTTCATGGTGGGTTCTAGT 60.615 50.000 0.00 0.00 0.00 2.57
405 406 1.626321 TCGCTTTCATGGTGGGTTCTA 59.374 47.619 0.00 0.00 0.00 2.10
406 407 0.400213 TCGCTTTCATGGTGGGTTCT 59.600 50.000 0.00 0.00 0.00 3.01
408 409 1.339929 GTTTCGCTTTCATGGTGGGTT 59.660 47.619 0.00 0.00 0.00 4.11
409 410 0.958822 GTTTCGCTTTCATGGTGGGT 59.041 50.000 0.00 0.00 0.00 4.51
411 412 1.662876 CGTGTTTCGCTTTCATGGTGG 60.663 52.381 0.00 0.00 0.00 4.61
412 413 1.002900 ACGTGTTTCGCTTTCATGGTG 60.003 47.619 0.00 0.00 44.19 4.17
413 414 1.263217 GACGTGTTTCGCTTTCATGGT 59.737 47.619 0.00 0.00 44.19 3.55
417 418 1.492319 CCGGACGTGTTTCGCTTTCA 61.492 55.000 0.00 0.00 44.19 2.69
418 419 1.203313 CCGGACGTGTTTCGCTTTC 59.797 57.895 0.00 0.00 44.19 2.62
419 420 2.248835 CCCGGACGTGTTTCGCTTT 61.249 57.895 0.73 0.00 44.19 3.51
420 421 2.663852 CCCGGACGTGTTTCGCTT 60.664 61.111 0.73 0.00 44.19 4.68
423 424 3.708734 GTGCCCGGACGTGTTTCG 61.709 66.667 0.73 0.00 46.00 3.46
424 425 2.589442 TGTGCCCGGACGTGTTTC 60.589 61.111 0.73 0.00 0.00 2.78
425 426 2.590575 CTGTGCCCGGACGTGTTT 60.591 61.111 0.73 0.00 0.00 2.83
430 431 1.890041 TTTGAACTGTGCCCGGACG 60.890 57.895 0.73 0.00 0.00 4.79
437 438 1.131504 TCACAACCGTTTGAACTGTGC 59.868 47.619 0.00 0.00 37.81 4.57
473 474 1.837439 TCATAAGGCCATCTCCAACGT 59.163 47.619 5.01 0.00 0.00 3.99
485 486 7.119846 CCTTGGCTTAGTATATGTTCATAAGGC 59.880 40.741 9.19 9.19 44.69 4.35
513 514 2.484264 ACTGAAACTACATGGCTTTCGC 59.516 45.455 0.00 0.00 0.00 4.70
514 515 4.688879 TGTACTGAAACTACATGGCTTTCG 59.311 41.667 0.00 1.23 0.00 3.46
519 521 6.371389 GTTTTCTGTACTGAAACTACATGGC 58.629 40.000 22.92 6.84 35.91 4.40
628 4207 3.571401 CCTGGGATTAATCAGGCATGTTC 59.429 47.826 17.07 0.00 43.22 3.18
690 4470 1.683385 CGATCAGGTAGGACATGAGCA 59.317 52.381 9.74 0.00 44.39 4.26
792 4573 0.676184 ATGACACCGGGATGAGATCG 59.324 55.000 6.32 0.00 0.00 3.69
865 4684 0.467290 GGGGCTTTGGTTCAGTGTCA 60.467 55.000 0.00 0.00 0.00 3.58
950 4800 1.737838 TTATGCTCTTGGTTGCGAGG 58.262 50.000 0.00 0.00 0.00 4.63
1014 4868 5.468746 GCAAGTCTCGGTATTGCCAATAATA 59.531 40.000 0.00 0.00 42.70 0.98
1016 4870 3.625764 GCAAGTCTCGGTATTGCCAATAA 59.374 43.478 0.00 0.00 42.70 1.40
1044 4898 5.064071 GCCTCTCTCACATAAAGTTGCTAAC 59.936 44.000 0.00 0.00 0.00 2.34
1047 4901 3.008375 TGCCTCTCTCACATAAAGTTGCT 59.992 43.478 0.00 0.00 0.00 3.91
1094 4948 8.442310 TTTGGCATTGTGTCAAATATTGGCAAT 61.442 33.333 18.01 18.01 45.74 3.56
1151 5005 3.018856 TGGCAGACTTGGAGCATAATTG 58.981 45.455 0.00 0.00 0.00 2.32
1169 5023 4.021925 AGGGACTCGGCACTTGGC 62.022 66.667 0.00 0.00 43.74 4.52
1170 5024 2.046892 CAGGGACTCGGCACTTGG 60.047 66.667 0.00 0.00 34.60 3.61
1171 5025 2.743928 GCAGGGACTCGGCACTTG 60.744 66.667 0.00 0.00 34.60 3.16
1174 5028 4.767255 CTGGCAGGGACTCGGCAC 62.767 72.222 6.61 0.00 37.20 5.01
1177 5031 4.463879 CAGCTGGCAGGGACTCGG 62.464 72.222 17.64 0.00 34.60 4.63
1178 5032 3.368190 CTCAGCTGGCAGGGACTCG 62.368 68.421 17.64 0.96 34.60 4.18
1179 5033 1.958902 CTCTCAGCTGGCAGGGACTC 61.959 65.000 17.64 0.00 34.60 3.36
1262 5139 0.512518 CGTGATGACGTTGCACATGT 59.487 50.000 14.04 0.00 40.91 3.21
1548 5428 2.360852 TCCTCGGAGTGGGACGAC 60.361 66.667 4.02 0.00 42.23 4.34
1609 5508 3.036429 GCTCACGGGAAGGCCATCT 62.036 63.158 5.01 0.00 35.15 2.90
1643 5568 0.679960 TCTGTCGCCAGATCCTTCGA 60.680 55.000 0.00 0.00 42.80 3.71
1648 5573 1.520342 GTGCTCTGTCGCCAGATCC 60.520 63.158 0.00 0.00 46.38 3.36
1653 5578 4.314440 GGGTGTGCTCTGTCGCCA 62.314 66.667 0.00 0.00 36.11 5.69
1660 5585 0.536006 GCAGAAACTGGGTGTGCTCT 60.536 55.000 0.00 0.00 31.21 4.09
1723 5661 3.169198 GCTTGCTGTGCGTACTCC 58.831 61.111 4.97 0.00 0.00 3.85
1796 5739 1.999735 CAAGTATGTGCGTGTCCGATT 59.000 47.619 0.00 0.00 35.63 3.34
1810 5758 2.501723 CTGTACCACCCAGCTCAAGTAT 59.498 50.000 0.00 0.00 0.00 2.12
1815 5763 1.831106 CATACTGTACCACCCAGCTCA 59.169 52.381 0.00 0.00 33.09 4.26
1825 5780 5.535406 AGCTAGTACCATCACATACTGTACC 59.465 44.000 0.00 0.00 33.87 3.34
1898 5915 5.398711 CGCAGACGAGTAGAATGGTTATTAC 59.601 44.000 0.00 0.00 43.93 1.89
1899 5916 5.516996 CGCAGACGAGTAGAATGGTTATTA 58.483 41.667 0.00 0.00 43.93 0.98
1900 5917 4.360563 CGCAGACGAGTAGAATGGTTATT 58.639 43.478 0.00 0.00 43.93 1.40
1901 5918 3.795826 GCGCAGACGAGTAGAATGGTTAT 60.796 47.826 0.30 0.00 43.93 1.89
1902 5919 2.479049 GCGCAGACGAGTAGAATGGTTA 60.479 50.000 0.30 0.00 43.93 2.85
1906 5923 1.321743 GTTGCGCAGACGAGTAGAATG 59.678 52.381 11.31 0.00 43.93 2.67
1962 5999 9.778993 CAACAAGAACAATCGATCAATCTTTAT 57.221 29.630 13.68 6.05 0.00 1.40
1974 6027 2.981805 CCATGCACAACAAGAACAATCG 59.018 45.455 0.00 0.00 0.00 3.34
1990 6043 4.495472 CACGAACGATAACAAATTCCATGC 59.505 41.667 0.14 0.00 0.00 4.06
2010 6068 2.604462 TCGAAGACATGCATGAATCACG 59.396 45.455 32.75 24.68 0.00 4.35
2031 6094 0.531974 AGTTTCGCCACGTCACATGT 60.532 50.000 0.00 0.00 0.00 3.21
2143 6425 6.851222 TCTTTAAAGAGAGTGCTTGACTTG 57.149 37.500 13.99 0.00 33.83 3.16
2177 6467 4.466015 GCTAATTCTCTGGATAGCTAGCCT 59.534 45.833 27.40 9.10 38.15 4.58
2178 6468 4.466015 AGCTAATTCTCTGGATAGCTAGCC 59.534 45.833 21.41 21.41 46.80 3.93
2183 6473 7.066284 TGTTTTCAAGCTAATTCTCTGGATAGC 59.934 37.037 0.00 0.00 40.77 2.97
2184 6474 8.498054 TGTTTTCAAGCTAATTCTCTGGATAG 57.502 34.615 0.00 0.00 0.00 2.08
2185 6475 8.862325 TTGTTTTCAAGCTAATTCTCTGGATA 57.138 30.769 0.00 0.00 34.60 2.59
2207 10041 0.319900 CCTGCTAGCGTGACACTTGT 60.320 55.000 10.77 0.00 0.00 3.16
2209 10043 0.038159 GTCCTGCTAGCGTGACACTT 60.038 55.000 23.90 0.00 0.00 3.16
2210 10044 0.896019 AGTCCTGCTAGCGTGACACT 60.896 55.000 27.94 15.61 0.00 3.55
2212 10046 0.809385 GTAGTCCTGCTAGCGTGACA 59.191 55.000 27.94 16.50 0.00 3.58
2213 10047 0.809385 TGTAGTCCTGCTAGCGTGAC 59.191 55.000 22.26 22.26 0.00 3.67
2214 10048 1.541379 TTGTAGTCCTGCTAGCGTGA 58.459 50.000 10.77 6.05 0.00 4.35
2215 10049 2.586258 ATTGTAGTCCTGCTAGCGTG 57.414 50.000 10.77 5.38 0.00 5.34
2216 10050 4.585162 AGATAATTGTAGTCCTGCTAGCGT 59.415 41.667 10.77 0.00 0.00 5.07
2217 10051 4.920340 CAGATAATTGTAGTCCTGCTAGCG 59.080 45.833 10.77 4.90 0.00 4.26
2218 10052 4.688413 GCAGATAATTGTAGTCCTGCTAGC 59.312 45.833 8.10 8.10 42.46 3.42
2219 10053 5.847304 TGCAGATAATTGTAGTCCTGCTAG 58.153 41.667 12.62 0.00 45.02 3.42
2220 10054 5.869649 TGCAGATAATTGTAGTCCTGCTA 57.130 39.130 12.62 0.85 45.02 3.49
2221 10055 4.760530 TGCAGATAATTGTAGTCCTGCT 57.239 40.909 12.62 0.00 45.02 4.24
2222 10056 4.274459 CCTTGCAGATAATTGTAGTCCTGC 59.726 45.833 0.00 0.00 45.01 4.85
2223 10057 5.431765 ACCTTGCAGATAATTGTAGTCCTG 58.568 41.667 0.00 0.00 0.00 3.86
2224 10058 5.700402 ACCTTGCAGATAATTGTAGTCCT 57.300 39.130 0.00 0.00 0.00 3.85
2225 10059 6.555315 CAAACCTTGCAGATAATTGTAGTCC 58.445 40.000 0.00 0.00 0.00 3.85
2282 10116 3.314331 AGTCCACCTGTCCGCTGG 61.314 66.667 0.00 0.00 39.33 4.85
2286 10120 0.179029 AAAACCAGTCCACCTGTCCG 60.179 55.000 0.00 0.00 39.74 4.79
2299 10133 3.006323 ACGCATGAAAATGCCTAAAACCA 59.994 39.130 0.00 0.00 44.27 3.67
2303 10137 2.029560 TGCACGCATGAAAATGCCTAAA 60.030 40.909 0.00 0.00 44.27 1.85
2306 10140 0.317799 TTGCACGCATGAAAATGCCT 59.682 45.000 0.00 0.00 44.27 4.75
2311 10146 0.877743 TCGGATTGCACGCATGAAAA 59.122 45.000 0.00 0.00 0.00 2.29
2319 10154 0.452122 GGTTTCGTTCGGATTGCACG 60.452 55.000 0.00 0.00 35.18 5.34
2321 10156 1.153353 GAGGTTTCGTTCGGATTGCA 58.847 50.000 0.00 0.00 0.00 4.08
2348 10184 4.333649 CGTGCATGAGTTCCTAATCAACAT 59.666 41.667 0.00 0.00 0.00 2.71
2374 10210 4.278170 TGTCCTGTTTTTACTTGCCATGAG 59.722 41.667 0.00 0.00 0.00 2.90
2386 10222 1.537990 GCCGTTGCATGTCCTGTTTTT 60.538 47.619 0.00 0.00 37.47 1.94
2427 10263 1.339151 GCCCTACAGGACAAGAGGTTG 60.339 57.143 0.00 0.00 38.24 3.77
2436 10273 2.893398 CTGGTCGCCCTACAGGAC 59.107 66.667 0.00 0.00 38.24 3.85
2454 10291 4.989168 ACCTTATTCGTTCAGTCAAGTCAC 59.011 41.667 0.00 0.00 0.00 3.67
2504 10434 8.551280 ATCGGTAGATAAGAATAGCGTATGGCT 61.551 40.741 4.08 0.00 45.01 4.75
2505 10435 5.035443 CGGTAGATAAGAATAGCGTATGGC 58.965 45.833 0.00 0.00 44.05 4.40
2506 10436 6.432607 TCGGTAGATAAGAATAGCGTATGG 57.567 41.667 4.08 0.00 42.03 2.74
2507 10437 7.133513 GGATCGGTAGATAAGAATAGCGTATG 58.866 42.308 4.08 0.00 42.03 2.39
2508 10438 6.827251 TGGATCGGTAGATAAGAATAGCGTAT 59.173 38.462 4.08 0.00 42.03 3.06
2509 10439 6.175471 TGGATCGGTAGATAAGAATAGCGTA 58.825 40.000 4.08 0.00 42.03 4.42
2510 10440 5.008331 TGGATCGGTAGATAAGAATAGCGT 58.992 41.667 4.08 0.00 42.03 5.07
2511 10441 5.562506 TGGATCGGTAGATAAGAATAGCG 57.437 43.478 0.00 0.00 42.57 4.26
2512 10442 5.344884 GCTGGATCGGTAGATAAGAATAGC 58.655 45.833 0.00 0.00 37.19 2.97
2514 10444 5.008331 ACGCTGGATCGGTAGATAAGAATA 58.992 41.667 0.00 0.00 37.19 1.75
2516 10446 3.220110 ACGCTGGATCGGTAGATAAGAA 58.780 45.455 0.00 0.00 37.19 2.52
2517 10447 2.812591 GACGCTGGATCGGTAGATAAGA 59.187 50.000 0.00 0.00 37.19 2.10
2518 10448 2.552743 TGACGCTGGATCGGTAGATAAG 59.447 50.000 0.00 0.00 37.19 1.73
2519 10449 2.552743 CTGACGCTGGATCGGTAGATAA 59.447 50.000 0.00 0.00 37.19 1.75
2520 10450 2.152016 CTGACGCTGGATCGGTAGATA 58.848 52.381 0.00 0.00 37.19 1.98
2521 10451 0.955178 CTGACGCTGGATCGGTAGAT 59.045 55.000 0.00 0.00 40.38 1.98
2522 10452 0.107361 TCTGACGCTGGATCGGTAGA 60.107 55.000 0.00 0.00 0.00 2.59
2523 10453 0.309302 CTCTGACGCTGGATCGGTAG 59.691 60.000 0.00 0.00 0.00 3.18
2524 10454 0.107361 TCTCTGACGCTGGATCGGTA 60.107 55.000 0.00 0.00 0.00 4.02
2525 10455 0.753479 ATCTCTGACGCTGGATCGGT 60.753 55.000 0.00 0.00 0.00 4.69
2526 10456 0.039617 GATCTCTGACGCTGGATCGG 60.040 60.000 0.00 0.00 0.00 4.18
2527 10457 0.385348 CGATCTCTGACGCTGGATCG 60.385 60.000 10.50 10.50 46.78 3.69
2528 10458 0.039617 CCGATCTCTGACGCTGGATC 60.040 60.000 0.00 0.00 33.41 3.36
2529 10459 1.459455 CCCGATCTCTGACGCTGGAT 61.459 60.000 0.00 0.00 0.00 3.41
2530 10460 2.121538 CCCGATCTCTGACGCTGGA 61.122 63.158 0.00 0.00 0.00 3.86
2531 10461 2.415010 CCCGATCTCTGACGCTGG 59.585 66.667 0.00 0.00 0.00 4.85
2532 10462 1.226802 CACCCGATCTCTGACGCTG 60.227 63.158 0.00 0.00 0.00 5.18
2533 10463 0.965866 TTCACCCGATCTCTGACGCT 60.966 55.000 0.00 0.00 0.00 5.07
2534 10464 0.108804 TTTCACCCGATCTCTGACGC 60.109 55.000 0.00 0.00 0.00 5.19
2535 10465 1.067846 TGTTTCACCCGATCTCTGACG 60.068 52.381 0.00 0.00 0.00 4.35
2536 10466 2.338500 GTGTTTCACCCGATCTCTGAC 58.662 52.381 0.00 0.00 0.00 3.51
2537 10467 1.067846 CGTGTTTCACCCGATCTCTGA 60.068 52.381 0.00 0.00 0.00 3.27
2538 10468 1.350193 CGTGTTTCACCCGATCTCTG 58.650 55.000 0.00 0.00 0.00 3.35
2539 10469 0.246635 CCGTGTTTCACCCGATCTCT 59.753 55.000 0.00 0.00 0.00 3.10
2540 10470 1.359459 GCCGTGTTTCACCCGATCTC 61.359 60.000 0.00 0.00 0.00 2.75
2541 10471 1.375523 GCCGTGTTTCACCCGATCT 60.376 57.895 0.00 0.00 0.00 2.75
2542 10472 2.736682 CGCCGTGTTTCACCCGATC 61.737 63.158 0.00 0.00 30.81 3.69
2543 10473 2.740826 CGCCGTGTTTCACCCGAT 60.741 61.111 0.00 0.00 30.81 4.18
2544 10474 4.973055 CCGCCGTGTTTCACCCGA 62.973 66.667 8.41 0.00 30.81 5.14
2594 10524 5.505173 AAAACAACAGACTCCATGAACAG 57.495 39.130 0.00 0.00 0.00 3.16
2595 10525 5.913137 AAAAACAACAGACTCCATGAACA 57.087 34.783 0.00 0.00 0.00 3.18
2596 10526 6.791303 TGTAAAAACAACAGACTCCATGAAC 58.209 36.000 0.00 0.00 0.00 3.18
2597 10527 7.424803 CATGTAAAAACAACAGACTCCATGAA 58.575 34.615 0.00 0.00 0.00 2.57
2599 10529 5.630680 GCATGTAAAAACAACAGACTCCATG 59.369 40.000 0.00 0.00 0.00 3.66
2600 10530 5.278957 GGCATGTAAAAACAACAGACTCCAT 60.279 40.000 0.00 0.00 0.00 3.41
2601 10531 4.037446 GGCATGTAAAAACAACAGACTCCA 59.963 41.667 0.00 0.00 0.00 3.86
2602 10532 4.278419 AGGCATGTAAAAACAACAGACTCC 59.722 41.667 0.00 0.00 0.00 3.85
2604 10534 5.009010 CAGAGGCATGTAAAAACAACAGACT 59.991 40.000 0.00 0.00 0.00 3.24
2607 10537 3.983344 GCAGAGGCATGTAAAAACAACAG 59.017 43.478 0.00 0.00 40.72 3.16
2617 10549 1.448365 CTGCACGCAGAGGCATGTA 60.448 57.895 13.87 0.00 46.30 2.29
2630 10562 1.233019 ATCAGCGCCAATATCTGCAC 58.767 50.000 2.29 0.00 0.00 4.57
2652 10584 4.730949 AATGCATTCAAGATTGGACTGG 57.269 40.909 5.99 0.00 0.00 4.00
2681 10613 1.797025 CTCTTTGTCCCGTTCTGTCC 58.203 55.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.