Multiple sequence alignment - TraesCS2A01G494100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G494100 chr2A 100.000 2450 0 0 1 2450 726158383 726160832 0.000000e+00 4525.0
1 TraesCS2A01G494100 chr2A 83.380 716 76 24 774 1456 726085528 726086233 7.440000e-175 623.0
2 TraesCS2A01G494100 chr2A 81.583 695 86 25 774 1451 726100093 726100762 9.970000e-149 536.0
3 TraesCS2A01G494100 chr2A 87.500 184 17 5 1180 1357 726273441 726273624 8.880000e-50 207.0
4 TraesCS2A01G494100 chr2A 80.753 239 25 10 1197 1429 726296105 726296328 1.510000e-37 167.0
5 TraesCS2A01G494100 chr2B 90.046 1316 83 22 774 2054 717009803 717011105 0.000000e+00 1661.0
6 TraesCS2A01G494100 chr2B 79.981 1049 131 48 774 1779 716977715 716978727 0.000000e+00 701.0
7 TraesCS2A01G494100 chr2B 89.453 512 42 3 1 500 717006057 717006568 9.560000e-179 636.0
8 TraesCS2A01G494100 chr2B 77.524 614 61 37 1 559 716972669 716973260 5.120000e-77 298.0
9 TraesCS2A01G494100 chr2B 81.338 284 32 17 1180 1457 717043652 717043920 6.860000e-51 211.0
10 TraesCS2A01G494100 chr2B 89.103 156 11 6 509 660 717008674 717008827 3.220000e-44 189.0
11 TraesCS2A01G494100 chr2B 80.392 102 18 1 2054 2153 601339320 601339219 2.610000e-10 76.8
12 TraesCS2A01G494100 chr2D 81.187 893 101 40 775 1618 591177925 591178799 0.000000e+00 656.0
13 TraesCS2A01G494100 chr2D 88.740 524 52 6 997 1519 591276016 591276533 3.440000e-178 634.0
14 TraesCS2A01G494100 chr2D 80.870 805 91 33 998 1783 591121599 591122359 2.110000e-160 575.0
15 TraesCS2A01G494100 chr2D 82.171 258 27 11 1180 1429 591388841 591389087 1.150000e-48 204.0
16 TraesCS2A01G494100 chr5A 90.217 92 9 0 1963 2054 17246297 17246206 1.190000e-23 121.0
17 TraesCS2A01G494100 chr1B 83.051 118 9 6 2052 2166 518867276 518867385 2.010000e-16 97.1
18 TraesCS2A01G494100 chr5B 100.000 32 0 0 2052 2083 679578246 679578277 2.630000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G494100 chr2A 726158383 726160832 2449 False 4525.000000 4525 100.000 1 2450 1 chr2A.!!$F3 2449
1 TraesCS2A01G494100 chr2A 726085528 726086233 705 False 623.000000 623 83.380 774 1456 1 chr2A.!!$F1 682
2 TraesCS2A01G494100 chr2A 726100093 726100762 669 False 536.000000 536 81.583 774 1451 1 chr2A.!!$F2 677
3 TraesCS2A01G494100 chr2B 717006057 717011105 5048 False 828.666667 1661 89.534 1 2054 3 chr2B.!!$F4 2053
4 TraesCS2A01G494100 chr2B 716977715 716978727 1012 False 701.000000 701 79.981 774 1779 1 chr2B.!!$F2 1005
5 TraesCS2A01G494100 chr2B 716972669 716973260 591 False 298.000000 298 77.524 1 559 1 chr2B.!!$F1 558
6 TraesCS2A01G494100 chr2D 591177925 591178799 874 False 656.000000 656 81.187 775 1618 1 chr2D.!!$F2 843
7 TraesCS2A01G494100 chr2D 591276016 591276533 517 False 634.000000 634 88.740 997 1519 1 chr2D.!!$F3 522
8 TraesCS2A01G494100 chr2D 591121599 591122359 760 False 575.000000 575 80.870 998 1783 1 chr2D.!!$F1 785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 513 0.033366 GCCTTCTCTAGCTAGCCTGC 59.967 60.0 16.35 9.81 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2242 5399 0.028374 GTTTTTGTGTCCGGACCGTG 59.972 55.0 31.19 4.52 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 39 2.289820 TCATCGGATAGACTCGAAACGG 59.710 50.000 0.00 0.00 38.92 4.44
42 45 3.788163 CGGATAGACTCGAAACGGTAAAC 59.212 47.826 0.00 0.00 0.00 2.01
62 65 0.889186 GGAAACCAAGCTCAAGCCGA 60.889 55.000 0.00 0.00 43.38 5.54
136 139 4.202535 GGAGGTTTAGGAAGAAGGGAAACA 60.203 45.833 0.00 0.00 32.78 2.83
151 154 1.606668 GAAACAAAGATCCGTGGCACA 59.393 47.619 19.09 0.00 0.00 4.57
156 159 3.490759 GATCCGTGGCACAGCACG 61.491 66.667 19.09 6.28 41.80 5.34
180 183 2.156542 CGCATGCGTCATATGGAGG 58.843 57.895 31.33 0.00 34.35 4.30
188 191 0.249911 GTCATATGGAGGTGGACCGC 60.250 60.000 2.13 0.00 42.08 5.68
244 254 1.666872 CTTGCTTGCTTTGCCTGGC 60.667 57.895 12.87 12.87 0.00 4.85
377 407 4.988716 AGGTCCTCGACGGTGCCA 62.989 66.667 0.00 0.00 32.65 4.92
459 513 0.033366 GCCTTCTCTAGCTAGCCTGC 59.967 60.000 16.35 9.81 0.00 4.85
510 567 4.715130 TCCTCCCTGGGACACGGG 62.715 72.222 12.53 11.99 44.52 5.28
586 2740 0.171231 CTCGAGCACAGATGGACGAA 59.829 55.000 0.00 0.00 0.00 3.85
587 2741 0.817654 TCGAGCACAGATGGACGAAT 59.182 50.000 0.00 0.00 0.00 3.34
593 2747 3.191371 AGCACAGATGGACGAATTTTTCC 59.809 43.478 0.00 0.26 0.00 3.13
596 2750 4.697352 CACAGATGGACGAATTTTTCCTCT 59.303 41.667 7.57 5.60 32.55 3.69
691 3190 5.355350 AGAAAATGATCTAAGGAAGCGTTGG 59.645 40.000 0.00 0.00 0.00 3.77
711 3210 3.649277 ATCCGCCTGAGTGTCGCAC 62.649 63.158 2.28 2.28 34.10 5.34
712 3211 4.662961 CCGCCTGAGTGTCGCACA 62.663 66.667 11.58 0.00 36.74 4.57
730 3229 2.297701 ACATGCGGTGACAGAAAAAGT 58.702 42.857 0.00 0.00 0.00 2.66
732 3231 3.880490 ACATGCGGTGACAGAAAAAGTAA 59.120 39.130 0.00 0.00 0.00 2.24
736 3723 4.819630 TGCGGTGACAGAAAAAGTAAATCT 59.180 37.500 0.00 0.00 0.00 2.40
737 3724 5.992829 TGCGGTGACAGAAAAAGTAAATCTA 59.007 36.000 0.00 0.00 0.00 1.98
741 3728 7.119262 CGGTGACAGAAAAAGTAAATCTACCAT 59.881 37.037 0.00 0.00 0.00 3.55
755 3742 6.777213 AATCTACCATACTTCACTCGTCTT 57.223 37.500 0.00 0.00 0.00 3.01
764 3751 5.517322 ACTTCACTCGTCTTACTTTCACT 57.483 39.130 0.00 0.00 0.00 3.41
765 3752 5.282510 ACTTCACTCGTCTTACTTTCACTG 58.717 41.667 0.00 0.00 0.00 3.66
785 3803 5.007430 CACTGGAAATGAAGTGCTATGCTAG 59.993 44.000 0.00 0.00 37.58 3.42
867 3901 0.388520 GCAATTTCCGCCAACTCCAC 60.389 55.000 0.00 0.00 0.00 4.02
874 3908 2.310233 CGCCAACTCCACAGTGACG 61.310 63.158 0.62 0.00 31.06 4.35
931 3966 0.671251 CCGCTCTCCAGATACTCCAC 59.329 60.000 0.00 0.00 0.00 4.02
954 4005 2.812358 TACGCAAGCTCAAAGAGTCA 57.188 45.000 0.00 0.00 45.62 3.41
959 4010 2.874701 GCAAGCTCAAAGAGTCAAGACA 59.125 45.455 2.72 0.00 31.39 3.41
960 4011 3.059051 GCAAGCTCAAAGAGTCAAGACAG 60.059 47.826 2.72 0.00 31.39 3.51
1037 4116 2.766400 CGGTCCAGTCTCTCGCCTC 61.766 68.421 0.00 0.00 0.00 4.70
1368 4459 4.207281 CGCCGCTCATTCCCTCGA 62.207 66.667 0.00 0.00 0.00 4.04
1494 4595 2.625737 CCAGACTCTGTACATTGCAGG 58.374 52.381 5.32 0.00 34.89 4.85
1525 4627 1.540267 CGTGTCCATTTGGCCCTTTA 58.460 50.000 0.00 0.00 34.44 1.85
1729 4885 9.884465 GCATTACAAAATGTACATATCTTCTCC 57.116 33.333 9.21 0.00 43.75 3.71
1791 4948 6.005823 TCCATATCTGTTGGCTTTATGATGG 58.994 40.000 0.00 0.00 34.06 3.51
1793 4950 6.072286 CCATATCTGTTGGCTTTATGATGGAC 60.072 42.308 0.00 0.00 33.43 4.02
1799 4956 1.748493 GGCTTTATGATGGACCGCAAA 59.252 47.619 0.00 0.00 0.00 3.68
1807 4964 2.766263 TGATGGACCGCAAAGTAGAGAT 59.234 45.455 0.00 0.00 0.00 2.75
1858 5015 1.873591 GTATGGATCCACCGTTCATGC 59.126 52.381 18.99 0.00 42.61 4.06
1876 5033 2.778299 TGCCAGCTTTAAGATTCGTGT 58.222 42.857 0.00 0.00 0.00 4.49
1877 5034 3.146066 TGCCAGCTTTAAGATTCGTGTT 58.854 40.909 0.00 0.00 0.00 3.32
1882 5039 6.567891 GCCAGCTTTAAGATTCGTGTTACTTT 60.568 38.462 0.00 0.00 0.00 2.66
1885 5042 8.682016 CAGCTTTAAGATTCGTGTTACTTTTTG 58.318 33.333 0.00 0.00 0.00 2.44
1890 5047 3.701532 TTCGTGTTACTTTTTGGCTGG 57.298 42.857 0.00 0.00 0.00 4.85
1896 5053 5.457473 CGTGTTACTTTTTGGCTGGTTTTAG 59.543 40.000 0.00 0.00 0.00 1.85
1899 5056 7.009815 GTGTTACTTTTTGGCTGGTTTTAGAAC 59.990 37.037 0.00 0.00 34.96 3.01
1909 5066 5.337554 GCTGGTTTTAGAACGTCTTGTTTT 58.662 37.500 0.00 0.00 42.09 2.43
1914 5071 7.432838 TGGTTTTAGAACGTCTTGTTTTAATGC 59.567 33.333 0.00 0.00 42.09 3.56
1916 5073 9.016623 GTTTTAGAACGTCTTGTTTTAATGCTT 57.983 29.630 0.00 0.00 42.09 3.91
1920 5077 8.782533 AGAACGTCTTGTTTTAATGCTTTTAG 57.217 30.769 0.00 0.00 42.09 1.85
1921 5078 8.403236 AGAACGTCTTGTTTTAATGCTTTTAGT 58.597 29.630 0.00 0.00 42.09 2.24
1923 5080 8.335256 ACGTCTTGTTTTAATGCTTTTAGTTG 57.665 30.769 0.00 0.00 0.00 3.16
1924 5081 7.043656 ACGTCTTGTTTTAATGCTTTTAGTTGC 60.044 33.333 0.00 0.00 0.00 4.17
1926 5083 6.975772 TCTTGTTTTAATGCTTTTAGTTGCGT 59.024 30.769 0.00 0.00 0.00 5.24
1935 5092 6.325849 TGCTTTTAGTTGCGTTTTTCTTTC 57.674 33.333 0.00 0.00 0.00 2.62
1936 5093 6.096695 TGCTTTTAGTTGCGTTTTTCTTTCT 58.903 32.000 0.00 0.00 0.00 2.52
1937 5094 6.034470 TGCTTTTAGTTGCGTTTTTCTTTCTG 59.966 34.615 0.00 0.00 0.00 3.02
1938 5095 5.942325 TTTAGTTGCGTTTTTCTTTCTGC 57.058 34.783 0.00 0.00 0.00 4.26
1942 5099 2.297701 TGCGTTTTTCTTTCTGCTCCT 58.702 42.857 0.00 0.00 0.00 3.69
1948 5105 5.215903 GTTTTTCTTTCTGCTCCTAAGTGC 58.784 41.667 0.00 0.00 0.00 4.40
1952 5109 3.261643 TCTTTCTGCTCCTAAGTGCATCA 59.738 43.478 0.00 0.00 41.37 3.07
1955 5112 4.226427 TCTGCTCCTAAGTGCATCATTT 57.774 40.909 0.00 0.00 41.37 2.32
1956 5113 4.592942 TCTGCTCCTAAGTGCATCATTTT 58.407 39.130 0.00 0.00 41.37 1.82
1957 5114 4.397103 TCTGCTCCTAAGTGCATCATTTTG 59.603 41.667 0.00 0.00 41.37 2.44
1978 5135 8.655651 TTTTGTTTTAATTCACCACATTCTCC 57.344 30.769 0.00 0.00 0.00 3.71
1980 5137 6.744112 TGTTTTAATTCACCACATTCTCCAC 58.256 36.000 0.00 0.00 0.00 4.02
1992 5149 8.400947 CACCACATTCTCCACTTATTCATAAAG 58.599 37.037 0.00 0.00 0.00 1.85
1998 5155 4.792068 TCCACTTATTCATAAAGGGCAGG 58.208 43.478 0.00 0.00 0.00 4.85
2030 5187 5.510671 CCGAGATAATGTGCAAAATACACC 58.489 41.667 0.00 0.00 37.22 4.16
2034 5191 6.186957 AGATAATGTGCAAAATACACCCAGA 58.813 36.000 0.00 0.00 37.22 3.86
2054 5211 2.969821 AGGTTCATGCACCCAAACTA 57.030 45.000 11.20 0.00 37.58 2.24
2055 5212 2.795329 AGGTTCATGCACCCAAACTAG 58.205 47.619 11.20 0.00 37.58 2.57
2056 5213 2.108250 AGGTTCATGCACCCAAACTAGT 59.892 45.455 11.20 0.00 37.58 2.57
2057 5214 3.329520 AGGTTCATGCACCCAAACTAGTA 59.670 43.478 11.20 0.00 37.58 1.82
2058 5215 3.689649 GGTTCATGCACCCAAACTAGTAG 59.310 47.826 2.67 0.00 0.00 2.57
2059 5216 4.564821 GGTTCATGCACCCAAACTAGTAGA 60.565 45.833 2.67 0.00 0.00 2.59
2060 5217 4.901197 TCATGCACCCAAACTAGTAGAA 57.099 40.909 3.59 0.00 0.00 2.10
2061 5218 5.435686 TCATGCACCCAAACTAGTAGAAT 57.564 39.130 3.59 0.00 0.00 2.40
2062 5219 5.185454 TCATGCACCCAAACTAGTAGAATG 58.815 41.667 3.59 2.30 0.00 2.67
2063 5220 3.343617 TGCACCCAAACTAGTAGAATGC 58.656 45.455 3.59 4.03 0.00 3.56
2064 5221 2.683362 GCACCCAAACTAGTAGAATGCC 59.317 50.000 3.59 0.00 0.00 4.40
2065 5222 3.279434 CACCCAAACTAGTAGAATGCCC 58.721 50.000 3.59 0.00 0.00 5.36
2066 5223 2.093128 ACCCAAACTAGTAGAATGCCCG 60.093 50.000 3.59 0.00 0.00 6.13
2067 5224 2.093128 CCCAAACTAGTAGAATGCCCGT 60.093 50.000 3.59 0.00 0.00 5.28
2068 5225 2.936498 CCAAACTAGTAGAATGCCCGTG 59.064 50.000 3.59 0.00 0.00 4.94
2069 5226 3.369052 CCAAACTAGTAGAATGCCCGTGA 60.369 47.826 3.59 0.00 0.00 4.35
2070 5227 3.802948 AACTAGTAGAATGCCCGTGAG 57.197 47.619 3.59 0.00 0.00 3.51
2071 5228 2.736347 ACTAGTAGAATGCCCGTGAGT 58.264 47.619 3.59 0.00 0.00 3.41
2072 5229 3.097614 ACTAGTAGAATGCCCGTGAGTT 58.902 45.455 3.59 0.00 0.00 3.01
2073 5230 2.386661 AGTAGAATGCCCGTGAGTTG 57.613 50.000 0.00 0.00 0.00 3.16
2074 5231 0.727398 GTAGAATGCCCGTGAGTTGC 59.273 55.000 0.00 0.00 0.00 4.17
2075 5232 0.613260 TAGAATGCCCGTGAGTTGCT 59.387 50.000 0.00 0.00 0.00 3.91
2076 5233 0.613260 AGAATGCCCGTGAGTTGCTA 59.387 50.000 0.00 0.00 0.00 3.49
2077 5234 0.727398 GAATGCCCGTGAGTTGCTAC 59.273 55.000 0.00 0.00 0.00 3.58
2078 5235 1.019278 AATGCCCGTGAGTTGCTACG 61.019 55.000 0.00 0.00 39.83 3.51
2082 5239 2.261671 CGTGAGTTGCTACGGGCT 59.738 61.111 4.43 0.00 42.39 5.19
2083 5240 1.805945 CGTGAGTTGCTACGGGCTC 60.806 63.158 4.43 0.00 42.39 4.70
2084 5241 1.592223 GTGAGTTGCTACGGGCTCT 59.408 57.895 4.43 3.30 42.39 4.09
2085 5242 0.815734 GTGAGTTGCTACGGGCTCTA 59.184 55.000 4.43 0.00 42.39 2.43
2086 5243 1.203994 GTGAGTTGCTACGGGCTCTAA 59.796 52.381 4.43 0.00 42.39 2.10
2087 5244 1.203994 TGAGTTGCTACGGGCTCTAAC 59.796 52.381 4.43 1.44 42.39 2.34
2088 5245 0.172803 AGTTGCTACGGGCTCTAACG 59.827 55.000 4.43 0.00 42.39 3.18
2089 5246 0.108945 GTTGCTACGGGCTCTAACGT 60.109 55.000 4.43 0.00 46.17 3.99
2090 5247 1.133025 GTTGCTACGGGCTCTAACGTA 59.867 52.381 0.00 0.00 43.79 3.57
2091 5248 1.683943 TGCTACGGGCTCTAACGTAT 58.316 50.000 0.00 0.00 43.59 3.06
2092 5249 2.849942 TGCTACGGGCTCTAACGTATA 58.150 47.619 0.00 0.00 43.59 1.47
2093 5250 3.213506 TGCTACGGGCTCTAACGTATAA 58.786 45.455 0.00 0.00 43.59 0.98
2094 5251 3.631686 TGCTACGGGCTCTAACGTATAAA 59.368 43.478 0.00 0.00 43.59 1.40
2095 5252 4.279169 TGCTACGGGCTCTAACGTATAAAT 59.721 41.667 0.00 0.00 43.59 1.40
2096 5253 4.620184 GCTACGGGCTCTAACGTATAAATG 59.380 45.833 0.00 0.00 43.59 2.32
2097 5254 4.924305 ACGGGCTCTAACGTATAAATGA 57.076 40.909 0.00 0.00 42.15 2.57
2098 5255 5.266733 ACGGGCTCTAACGTATAAATGAA 57.733 39.130 0.00 0.00 42.15 2.57
2099 5256 5.045872 ACGGGCTCTAACGTATAAATGAAC 58.954 41.667 0.00 0.00 42.15 3.18
2100 5257 4.446719 CGGGCTCTAACGTATAAATGAACC 59.553 45.833 0.00 0.00 0.00 3.62
2101 5258 5.362263 GGGCTCTAACGTATAAATGAACCA 58.638 41.667 0.00 0.00 0.00 3.67
2102 5259 5.818857 GGGCTCTAACGTATAAATGAACCAA 59.181 40.000 0.00 0.00 0.00 3.67
2103 5260 6.485648 GGGCTCTAACGTATAAATGAACCAAT 59.514 38.462 0.00 0.00 0.00 3.16
2104 5261 7.658575 GGGCTCTAACGTATAAATGAACCAATA 59.341 37.037 0.00 0.00 0.00 1.90
2105 5262 9.048446 GGCTCTAACGTATAAATGAACCAATAA 57.952 33.333 0.00 0.00 0.00 1.40
2133 5290 6.968131 TTAAGGTCATCTTCAAGATTGACG 57.032 37.500 16.97 0.00 35.51 4.35
2134 5291 3.265791 AGGTCATCTTCAAGATTGACGC 58.734 45.455 16.97 12.58 35.51 5.19
2135 5292 3.055530 AGGTCATCTTCAAGATTGACGCT 60.056 43.478 16.97 13.86 35.51 5.07
2136 5293 3.308323 GGTCATCTTCAAGATTGACGCTC 59.692 47.826 16.97 6.50 35.51 5.03
2137 5294 3.928992 GTCATCTTCAAGATTGACGCTCA 59.071 43.478 0.00 0.00 36.83 4.26
2138 5295 4.569966 GTCATCTTCAAGATTGACGCTCAT 59.430 41.667 0.00 0.00 36.83 2.90
2139 5296 5.064452 GTCATCTTCAAGATTGACGCTCATT 59.936 40.000 0.00 0.00 36.83 2.57
2140 5297 5.645067 TCATCTTCAAGATTGACGCTCATTT 59.355 36.000 0.00 0.00 36.83 2.32
2141 5298 5.536554 TCTTCAAGATTGACGCTCATTTC 57.463 39.130 0.00 0.00 36.83 2.17
2142 5299 5.240891 TCTTCAAGATTGACGCTCATTTCT 58.759 37.500 0.00 0.00 36.83 2.52
2143 5300 5.349817 TCTTCAAGATTGACGCTCATTTCTC 59.650 40.000 0.00 0.00 36.83 2.87
2144 5301 3.935203 TCAAGATTGACGCTCATTTCTCC 59.065 43.478 0.00 0.00 31.01 3.71
2145 5302 2.911484 AGATTGACGCTCATTTCTCCC 58.089 47.619 0.00 0.00 0.00 4.30
2146 5303 2.503356 AGATTGACGCTCATTTCTCCCT 59.497 45.455 0.00 0.00 0.00 4.20
2147 5304 2.386661 TTGACGCTCATTTCTCCCTC 57.613 50.000 0.00 0.00 0.00 4.30
2148 5305 1.266178 TGACGCTCATTTCTCCCTCA 58.734 50.000 0.00 0.00 0.00 3.86
2149 5306 1.833630 TGACGCTCATTTCTCCCTCAT 59.166 47.619 0.00 0.00 0.00 2.90
2150 5307 3.031013 TGACGCTCATTTCTCCCTCATA 58.969 45.455 0.00 0.00 0.00 2.15
2151 5308 3.181475 TGACGCTCATTTCTCCCTCATAC 60.181 47.826 0.00 0.00 0.00 2.39
2152 5309 2.223829 ACGCTCATTTCTCCCTCATACG 60.224 50.000 0.00 0.00 0.00 3.06
2153 5310 2.223829 CGCTCATTTCTCCCTCATACGT 60.224 50.000 0.00 0.00 0.00 3.57
2154 5311 3.385577 GCTCATTTCTCCCTCATACGTC 58.614 50.000 0.00 0.00 0.00 4.34
2155 5312 3.800604 GCTCATTTCTCCCTCATACGTCC 60.801 52.174 0.00 0.00 0.00 4.79
2156 5313 2.361119 TCATTTCTCCCTCATACGTCCG 59.639 50.000 0.00 0.00 0.00 4.79
2157 5314 1.108776 TTTCTCCCTCATACGTCCGG 58.891 55.000 0.00 0.00 0.00 5.14
2158 5315 0.256752 TTCTCCCTCATACGTCCGGA 59.743 55.000 0.00 0.00 0.00 5.14
2159 5316 0.465097 TCTCCCTCATACGTCCGGAC 60.465 60.000 25.28 25.28 0.00 4.79
2169 5326 3.530666 GTCCGGACGTGTTCGAAC 58.469 61.111 20.85 21.42 40.62 3.95
2170 5327 1.299316 GTCCGGACGTGTTCGAACA 60.299 57.895 26.53 26.53 40.62 3.18
2171 5328 0.665369 GTCCGGACGTGTTCGAACAT 60.665 55.000 31.81 18.60 41.59 2.71
2172 5329 0.387622 TCCGGACGTGTTCGAACATC 60.388 55.000 31.81 24.89 41.59 3.06
2173 5330 0.665068 CCGGACGTGTTCGAACATCA 60.665 55.000 31.81 8.60 41.59 3.07
2174 5331 1.133407 CGGACGTGTTCGAACATCAA 58.867 50.000 31.81 8.15 41.59 2.57
2175 5332 1.523515 CGGACGTGTTCGAACATCAAA 59.476 47.619 31.81 7.74 41.59 2.69
2176 5333 2.658224 CGGACGTGTTCGAACATCAAAC 60.658 50.000 31.81 18.21 41.59 2.93
2177 5334 2.285756 GGACGTGTTCGAACATCAAACA 59.714 45.455 31.81 7.03 41.59 2.83
2178 5335 3.531982 GACGTGTTCGAACATCAAACAG 58.468 45.455 31.81 18.59 41.59 3.16
2179 5336 2.286833 ACGTGTTCGAACATCAAACAGG 59.713 45.455 31.81 16.63 41.59 4.00
2180 5337 2.650608 GTGTTCGAACATCAAACAGGC 58.349 47.619 31.81 13.35 41.59 4.85
2181 5338 1.262950 TGTTCGAACATCAAACAGGCG 59.737 47.619 26.53 0.00 33.17 5.52
2182 5339 0.237235 TTCGAACATCAAACAGGCGC 59.763 50.000 0.00 0.00 0.00 6.53
2183 5340 1.154225 CGAACATCAAACAGGCGCC 60.154 57.895 21.89 21.89 0.00 6.53
2184 5341 1.212751 GAACATCAAACAGGCGCCC 59.787 57.895 26.15 5.07 0.00 6.13
2185 5342 1.523154 GAACATCAAACAGGCGCCCA 61.523 55.000 26.15 0.00 0.00 5.36
2186 5343 1.526575 AACATCAAACAGGCGCCCAG 61.527 55.000 26.15 19.53 0.00 4.45
2199 5356 2.118076 CCCAGCAGGCTTCCCAAA 59.882 61.111 0.00 0.00 0.00 3.28
2200 5357 1.533753 CCCAGCAGGCTTCCCAAAA 60.534 57.895 0.00 0.00 0.00 2.44
2201 5358 0.906282 CCCAGCAGGCTTCCCAAAAT 60.906 55.000 0.00 0.00 0.00 1.82
2202 5359 0.533951 CCAGCAGGCTTCCCAAAATC 59.466 55.000 0.00 0.00 0.00 2.17
2203 5360 0.533951 CAGCAGGCTTCCCAAAATCC 59.466 55.000 0.00 0.00 0.00 3.01
2204 5361 0.411058 AGCAGGCTTCCCAAAATCCT 59.589 50.000 0.00 0.00 0.00 3.24
2205 5362 1.640670 AGCAGGCTTCCCAAAATCCTA 59.359 47.619 0.00 0.00 0.00 2.94
2206 5363 1.751351 GCAGGCTTCCCAAAATCCTAC 59.249 52.381 0.00 0.00 0.00 3.18
2207 5364 2.379005 CAGGCTTCCCAAAATCCTACC 58.621 52.381 0.00 0.00 0.00 3.18
2208 5365 2.024941 CAGGCTTCCCAAAATCCTACCT 60.025 50.000 0.00 0.00 0.00 3.08
2209 5366 2.654896 AGGCTTCCCAAAATCCTACCTT 59.345 45.455 0.00 0.00 0.00 3.50
2210 5367 3.024547 GGCTTCCCAAAATCCTACCTTC 58.975 50.000 0.00 0.00 0.00 3.46
2211 5368 2.683362 GCTTCCCAAAATCCTACCTTCG 59.317 50.000 0.00 0.00 0.00 3.79
2212 5369 3.872630 GCTTCCCAAAATCCTACCTTCGT 60.873 47.826 0.00 0.00 0.00 3.85
2213 5370 3.622166 TCCCAAAATCCTACCTTCGTC 57.378 47.619 0.00 0.00 0.00 4.20
2214 5371 2.237893 TCCCAAAATCCTACCTTCGTCC 59.762 50.000 0.00 0.00 0.00 4.79
2215 5372 2.277084 CCAAAATCCTACCTTCGTCCG 58.723 52.381 0.00 0.00 0.00 4.79
2216 5373 2.277084 CAAAATCCTACCTTCGTCCGG 58.723 52.381 0.00 0.00 0.00 5.14
2217 5374 1.856629 AAATCCTACCTTCGTCCGGA 58.143 50.000 0.00 0.00 0.00 5.14
2218 5375 2.083628 AATCCTACCTTCGTCCGGAT 57.916 50.000 7.81 0.00 35.18 4.18
2219 5376 2.083628 ATCCTACCTTCGTCCGGATT 57.916 50.000 7.81 0.00 31.65 3.01
2220 5377 2.734755 TCCTACCTTCGTCCGGATTA 57.265 50.000 7.81 0.00 0.00 1.75
2221 5378 3.234234 TCCTACCTTCGTCCGGATTAT 57.766 47.619 7.81 0.00 0.00 1.28
2222 5379 3.152341 TCCTACCTTCGTCCGGATTATC 58.848 50.000 7.81 0.00 0.00 1.75
2223 5380 2.230750 CCTACCTTCGTCCGGATTATCC 59.769 54.545 7.81 0.14 0.00 2.59
2224 5381 1.784358 ACCTTCGTCCGGATTATCCA 58.216 50.000 7.81 0.00 35.91 3.41
2225 5382 2.326428 ACCTTCGTCCGGATTATCCAT 58.674 47.619 7.81 0.00 35.91 3.41
2226 5383 2.299297 ACCTTCGTCCGGATTATCCATC 59.701 50.000 7.81 0.20 35.91 3.51
2227 5384 2.299013 CCTTCGTCCGGATTATCCATCA 59.701 50.000 7.81 0.00 35.91 3.07
2228 5385 3.055819 CCTTCGTCCGGATTATCCATCAT 60.056 47.826 7.81 0.00 35.91 2.45
2229 5386 3.592898 TCGTCCGGATTATCCATCATG 57.407 47.619 7.81 0.06 35.91 3.07
2230 5387 2.897326 TCGTCCGGATTATCCATCATGT 59.103 45.455 7.81 0.00 35.91 3.21
2231 5388 3.056821 TCGTCCGGATTATCCATCATGTC 60.057 47.826 7.81 0.00 35.91 3.06
2232 5389 3.306019 CGTCCGGATTATCCATCATGTCA 60.306 47.826 7.81 0.00 35.91 3.58
2233 5390 4.248859 GTCCGGATTATCCATCATGTCAG 58.751 47.826 7.81 0.00 35.91 3.51
2234 5391 3.005554 CCGGATTATCCATCATGTCAGC 58.994 50.000 12.17 0.00 35.91 4.26
2235 5392 3.307269 CCGGATTATCCATCATGTCAGCT 60.307 47.826 12.17 0.00 35.91 4.24
2236 5393 3.931468 CGGATTATCCATCATGTCAGCTC 59.069 47.826 12.17 0.00 35.91 4.09
2237 5394 4.260170 GGATTATCCATCATGTCAGCTCC 58.740 47.826 6.34 0.00 36.28 4.70
2238 5395 4.263199 GGATTATCCATCATGTCAGCTCCA 60.263 45.833 6.34 0.00 36.28 3.86
2239 5396 4.776435 TTATCCATCATGTCAGCTCCAA 57.224 40.909 0.00 0.00 0.00 3.53
2240 5397 2.408271 TCCATCATGTCAGCTCCAAC 57.592 50.000 0.00 0.00 0.00 3.77
2241 5398 1.629861 TCCATCATGTCAGCTCCAACA 59.370 47.619 0.00 0.00 0.00 3.33
2242 5399 1.741706 CCATCATGTCAGCTCCAACAC 59.258 52.381 0.00 0.00 0.00 3.32
2243 5400 2.429478 CATCATGTCAGCTCCAACACA 58.571 47.619 0.00 0.00 0.00 3.72
2244 5401 1.882912 TCATGTCAGCTCCAACACAC 58.117 50.000 0.00 0.00 0.00 3.82
2245 5402 0.514255 CATGTCAGCTCCAACACACG 59.486 55.000 0.00 0.00 0.00 4.49
2246 5403 0.603707 ATGTCAGCTCCAACACACGG 60.604 55.000 0.00 0.00 0.00 4.94
2247 5404 1.227556 GTCAGCTCCAACACACGGT 60.228 57.895 0.00 0.00 0.00 4.83
2248 5405 1.069090 TCAGCTCCAACACACGGTC 59.931 57.895 0.00 0.00 0.00 4.79
2249 5406 1.961277 CAGCTCCAACACACGGTCC 60.961 63.158 0.00 0.00 0.00 4.46
2250 5407 3.041940 GCTCCAACACACGGTCCG 61.042 66.667 10.48 10.48 0.00 4.79
2251 5408 2.357034 CTCCAACACACGGTCCGG 60.357 66.667 17.28 7.22 0.00 5.14
2252 5409 2.838693 TCCAACACACGGTCCGGA 60.839 61.111 17.28 0.00 0.00 5.14
2253 5410 2.663852 CCAACACACGGTCCGGAC 60.664 66.667 27.04 27.04 0.00 4.79
2254 5411 2.107343 CAACACACGGTCCGGACA 59.893 61.111 34.40 0.00 0.00 4.02
2255 5412 2.107546 AACACACGGTCCGGACAC 59.892 61.111 34.40 22.34 0.00 3.67
2256 5413 2.723237 AACACACGGTCCGGACACA 61.723 57.895 34.40 0.00 0.00 3.72
2257 5414 2.107343 CACACGGTCCGGACACAA 59.893 61.111 34.40 0.00 0.00 3.33
2258 5415 1.521906 CACACGGTCCGGACACAAA 60.522 57.895 34.40 0.00 0.00 2.83
2259 5416 1.090625 CACACGGTCCGGACACAAAA 61.091 55.000 34.40 0.00 0.00 2.44
2260 5417 0.392729 ACACGGTCCGGACACAAAAA 60.393 50.000 34.40 0.00 0.00 1.94
2261 5418 0.028374 CACGGTCCGGACACAAAAAC 59.972 55.000 34.40 15.14 0.00 2.43
2262 5419 0.107557 ACGGTCCGGACACAAAAACT 60.108 50.000 34.40 5.43 0.00 2.66
2263 5420 0.584876 CGGTCCGGACACAAAAACTC 59.415 55.000 34.40 13.68 0.00 3.01
2264 5421 0.949397 GGTCCGGACACAAAAACTCC 59.051 55.000 34.40 10.81 0.00 3.85
2265 5422 1.670791 GTCCGGACACAAAAACTCCA 58.329 50.000 29.75 0.00 0.00 3.86
2266 5423 2.227194 GTCCGGACACAAAAACTCCAT 58.773 47.619 29.75 0.00 0.00 3.41
2267 5424 2.225727 GTCCGGACACAAAAACTCCATC 59.774 50.000 29.75 0.00 0.00 3.51
2268 5425 1.539827 CCGGACACAAAAACTCCATCC 59.460 52.381 0.00 0.00 0.00 3.51
2269 5426 1.539827 CGGACACAAAAACTCCATCCC 59.460 52.381 0.00 0.00 0.00 3.85
2270 5427 2.593026 GGACACAAAAACTCCATCCCA 58.407 47.619 0.00 0.00 0.00 4.37
2271 5428 3.165071 GGACACAAAAACTCCATCCCAT 58.835 45.455 0.00 0.00 0.00 4.00
2272 5429 3.056607 GGACACAAAAACTCCATCCCATG 60.057 47.826 0.00 0.00 0.00 3.66
2273 5430 3.826157 GACACAAAAACTCCATCCCATGA 59.174 43.478 0.00 0.00 0.00 3.07
2274 5431 4.419282 ACACAAAAACTCCATCCCATGAT 58.581 39.130 0.00 0.00 0.00 2.45
2275 5432 4.463891 ACACAAAAACTCCATCCCATGATC 59.536 41.667 0.00 0.00 0.00 2.92
2276 5433 4.026052 ACAAAAACTCCATCCCATGATCC 58.974 43.478 0.00 0.00 0.00 3.36
2277 5434 4.025360 CAAAAACTCCATCCCATGATCCA 58.975 43.478 0.00 0.00 0.00 3.41
2278 5435 3.303351 AAACTCCATCCCATGATCCAC 57.697 47.619 0.00 0.00 0.00 4.02
2279 5436 2.203120 ACTCCATCCCATGATCCACT 57.797 50.000 0.00 0.00 0.00 4.00
2280 5437 2.053244 ACTCCATCCCATGATCCACTC 58.947 52.381 0.00 0.00 0.00 3.51
2281 5438 2.336891 CTCCATCCCATGATCCACTCT 58.663 52.381 0.00 0.00 0.00 3.24
2282 5439 2.709934 CTCCATCCCATGATCCACTCTT 59.290 50.000 0.00 0.00 0.00 2.85
2283 5440 3.125656 TCCATCCCATGATCCACTCTTT 58.874 45.455 0.00 0.00 0.00 2.52
2284 5441 3.137176 TCCATCCCATGATCCACTCTTTC 59.863 47.826 0.00 0.00 0.00 2.62
2285 5442 3.484407 CATCCCATGATCCACTCTTTCC 58.516 50.000 0.00 0.00 0.00 3.13
2286 5443 1.846439 TCCCATGATCCACTCTTTCCC 59.154 52.381 0.00 0.00 0.00 3.97
2287 5444 1.565759 CCCATGATCCACTCTTTCCCA 59.434 52.381 0.00 0.00 0.00 4.37
2288 5445 2.176364 CCCATGATCCACTCTTTCCCAT 59.824 50.000 0.00 0.00 0.00 4.00
2289 5446 3.373438 CCCATGATCCACTCTTTCCCATT 60.373 47.826 0.00 0.00 0.00 3.16
2290 5447 4.284178 CCATGATCCACTCTTTCCCATTT 58.716 43.478 0.00 0.00 0.00 2.32
2291 5448 4.340381 CCATGATCCACTCTTTCCCATTTC 59.660 45.833 0.00 0.00 0.00 2.17
2292 5449 4.934797 TGATCCACTCTTTCCCATTTCT 57.065 40.909 0.00 0.00 0.00 2.52
2293 5450 5.261040 TGATCCACTCTTTCCCATTTCTT 57.739 39.130 0.00 0.00 0.00 2.52
2294 5451 5.012239 TGATCCACTCTTTCCCATTTCTTG 58.988 41.667 0.00 0.00 0.00 3.02
2295 5452 3.157087 TCCACTCTTTCCCATTTCTTGC 58.843 45.455 0.00 0.00 0.00 4.01
2296 5453 2.232208 CCACTCTTTCCCATTTCTTGCC 59.768 50.000 0.00 0.00 0.00 4.52
2297 5454 2.095059 CACTCTTTCCCATTTCTTGCCG 60.095 50.000 0.00 0.00 0.00 5.69
2298 5455 1.474077 CTCTTTCCCATTTCTTGCCGG 59.526 52.381 0.00 0.00 0.00 6.13
2299 5456 1.074727 TCTTTCCCATTTCTTGCCGGA 59.925 47.619 5.05 0.00 0.00 5.14
2300 5457 1.474077 CTTTCCCATTTCTTGCCGGAG 59.526 52.381 5.05 0.00 0.00 4.63
2301 5458 0.965363 TTCCCATTTCTTGCCGGAGC 60.965 55.000 5.05 0.00 40.48 4.70
2302 5459 2.418083 CCCATTTCTTGCCGGAGCC 61.418 63.158 5.05 0.00 38.69 4.70
2303 5460 1.379044 CCATTTCTTGCCGGAGCCT 60.379 57.895 5.05 0.00 38.69 4.58
2304 5461 1.379642 CCATTTCTTGCCGGAGCCTC 61.380 60.000 5.05 0.00 38.69 4.70
2305 5462 1.077429 ATTTCTTGCCGGAGCCTCC 60.077 57.895 5.05 0.00 38.69 4.30
2306 5463 2.558380 ATTTCTTGCCGGAGCCTCCC 62.558 60.000 5.05 0.00 38.69 4.30
2315 5472 4.439901 GAGCCTCCCCTTCCCCCT 62.440 72.222 0.00 0.00 0.00 4.79
2316 5473 4.439901 AGCCTCCCCTTCCCCCTC 62.440 72.222 0.00 0.00 0.00 4.30
2319 5476 4.416601 CTCCCCTTCCCCCTCGGT 62.417 72.222 0.00 0.00 0.00 4.69
2320 5477 3.945064 CTCCCCTTCCCCCTCGGTT 62.945 68.421 0.00 0.00 0.00 4.44
2321 5478 2.939353 CCCCTTCCCCCTCGGTTT 60.939 66.667 0.00 0.00 0.00 3.27
2322 5479 2.675371 CCCTTCCCCCTCGGTTTC 59.325 66.667 0.00 0.00 0.00 2.78
2323 5480 2.675371 CCTTCCCCCTCGGTTTCC 59.325 66.667 0.00 0.00 0.00 3.13
2324 5481 1.923909 CCTTCCCCCTCGGTTTCCT 60.924 63.158 0.00 0.00 0.00 3.36
2325 5482 1.299976 CTTCCCCCTCGGTTTCCTG 59.700 63.158 0.00 0.00 0.00 3.86
2326 5483 2.821679 CTTCCCCCTCGGTTTCCTGC 62.822 65.000 0.00 0.00 0.00 4.85
2327 5484 4.426313 CCCCCTCGGTTTCCTGCC 62.426 72.222 0.00 0.00 0.00 4.85
2334 5491 3.340727 CGGTTTCCTGCCGTAGTAG 57.659 57.895 0.00 0.00 43.84 2.57
2335 5492 0.179119 CGGTTTCCTGCCGTAGTAGG 60.179 60.000 0.00 0.00 46.71 3.18
2336 5493 0.177373 GGTTTCCTGCCGTAGTAGGG 59.823 60.000 4.43 4.43 45.47 3.53
2345 5502 2.135664 CCGTAGTAGGGCATTTCTCG 57.864 55.000 0.00 0.00 0.00 4.04
2346 5503 1.488527 CGTAGTAGGGCATTTCTCGC 58.511 55.000 0.00 0.00 0.00 5.03
2347 5504 1.067212 CGTAGTAGGGCATTTCTCGCT 59.933 52.381 0.00 0.00 0.00 4.93
2348 5505 2.474816 GTAGTAGGGCATTTCTCGCTG 58.525 52.381 0.00 0.00 0.00 5.18
2349 5506 0.179000 AGTAGGGCATTTCTCGCTGG 59.821 55.000 0.00 0.00 0.00 4.85
2350 5507 0.178068 GTAGGGCATTTCTCGCTGGA 59.822 55.000 0.00 0.00 0.00 3.86
2351 5508 0.465705 TAGGGCATTTCTCGCTGGAG 59.534 55.000 0.00 0.00 41.89 3.86
2358 5515 3.700109 TCTCGCTGGAGACCCTTG 58.300 61.111 0.00 0.00 44.28 3.61
2359 5516 1.076727 TCTCGCTGGAGACCCTTGA 59.923 57.895 0.00 0.00 44.28 3.02
2360 5517 0.541998 TCTCGCTGGAGACCCTTGAA 60.542 55.000 0.00 0.00 44.28 2.69
2361 5518 0.108424 CTCGCTGGAGACCCTTGAAG 60.108 60.000 0.00 0.00 43.27 3.02
2362 5519 1.743252 CGCTGGAGACCCTTGAAGC 60.743 63.158 0.00 0.00 0.00 3.86
2363 5520 1.376466 GCTGGAGACCCTTGAAGCA 59.624 57.895 0.00 0.00 0.00 3.91
2364 5521 0.250901 GCTGGAGACCCTTGAAGCAA 60.251 55.000 0.00 0.00 0.00 3.91
2365 5522 1.528129 CTGGAGACCCTTGAAGCAAC 58.472 55.000 0.00 0.00 0.00 4.17
2366 5523 1.072965 CTGGAGACCCTTGAAGCAACT 59.927 52.381 0.00 0.00 0.00 3.16
2367 5524 2.303022 CTGGAGACCCTTGAAGCAACTA 59.697 50.000 0.00 0.00 0.00 2.24
2368 5525 2.912956 TGGAGACCCTTGAAGCAACTAT 59.087 45.455 0.00 0.00 0.00 2.12
2369 5526 3.055094 TGGAGACCCTTGAAGCAACTATC 60.055 47.826 0.00 0.00 0.00 2.08
2370 5527 3.055094 GGAGACCCTTGAAGCAACTATCA 60.055 47.826 0.00 0.00 0.00 2.15
2371 5528 4.565652 GGAGACCCTTGAAGCAACTATCAA 60.566 45.833 0.00 0.00 34.57 2.57
2372 5529 4.985538 AGACCCTTGAAGCAACTATCAAA 58.014 39.130 0.00 0.00 35.31 2.69
2373 5530 5.574188 AGACCCTTGAAGCAACTATCAAAT 58.426 37.500 0.00 0.00 35.31 2.32
2374 5531 5.416952 AGACCCTTGAAGCAACTATCAAATG 59.583 40.000 0.00 0.00 35.31 2.32
2375 5532 4.463891 ACCCTTGAAGCAACTATCAAATGG 59.536 41.667 0.00 0.00 35.31 3.16
2376 5533 4.706476 CCCTTGAAGCAACTATCAAATGGA 59.294 41.667 0.00 0.00 35.31 3.41
2377 5534 5.361857 CCCTTGAAGCAACTATCAAATGGAT 59.638 40.000 0.00 0.00 40.14 3.41
2378 5535 6.127253 CCCTTGAAGCAACTATCAAATGGATT 60.127 38.462 0.00 0.00 37.44 3.01
2379 5536 7.325694 CCTTGAAGCAACTATCAAATGGATTT 58.674 34.615 0.00 0.00 37.44 2.17
2380 5537 8.469200 CCTTGAAGCAACTATCAAATGGATTTA 58.531 33.333 0.00 0.00 37.44 1.40
2381 5538 9.294030 CTTGAAGCAACTATCAAATGGATTTAC 57.706 33.333 0.00 0.00 37.44 2.01
2382 5539 7.771183 TGAAGCAACTATCAAATGGATTTACC 58.229 34.615 0.00 0.00 37.44 2.85
2383 5540 6.715347 AGCAACTATCAAATGGATTTACCC 57.285 37.500 0.00 0.00 37.44 3.69
2384 5541 6.435164 AGCAACTATCAAATGGATTTACCCT 58.565 36.000 0.00 0.00 37.44 4.34
2385 5542 6.897413 AGCAACTATCAAATGGATTTACCCTT 59.103 34.615 0.00 0.00 37.44 3.95
2386 5543 7.068716 AGCAACTATCAAATGGATTTACCCTTC 59.931 37.037 0.00 0.00 37.44 3.46
2387 5544 7.068716 GCAACTATCAAATGGATTTACCCTTCT 59.931 37.037 0.00 0.00 37.44 2.85
2388 5545 9.627123 CAACTATCAAATGGATTTACCCTTCTA 57.373 33.333 0.00 0.00 37.44 2.10
2390 5547 9.628500 ACTATCAAATGGATTTACCCTTCTAAC 57.372 33.333 0.00 0.00 37.44 2.34
2391 5548 7.898014 ATCAAATGGATTTACCCTTCTAACC 57.102 36.000 0.00 0.00 38.00 2.85
2392 5549 7.039722 TCAAATGGATTTACCCTTCTAACCT 57.960 36.000 0.00 0.00 38.00 3.50
2393 5550 8.165267 TCAAATGGATTTACCCTTCTAACCTA 57.835 34.615 0.00 0.00 38.00 3.08
2394 5551 8.616598 TCAAATGGATTTACCCTTCTAACCTAA 58.383 33.333 0.00 0.00 38.00 2.69
2395 5552 8.683615 CAAATGGATTTACCCTTCTAACCTAAC 58.316 37.037 0.00 0.00 38.00 2.34
2396 5553 6.317663 TGGATTTACCCTTCTAACCTAACC 57.682 41.667 0.00 0.00 38.00 2.85
2397 5554 5.791664 TGGATTTACCCTTCTAACCTAACCA 59.208 40.000 0.00 0.00 38.00 3.67
2398 5555 6.275144 TGGATTTACCCTTCTAACCTAACCAA 59.725 38.462 0.00 0.00 38.00 3.67
2399 5556 7.177184 GGATTTACCCTTCTAACCTAACCAAA 58.823 38.462 0.00 0.00 0.00 3.28
2400 5557 7.670979 GGATTTACCCTTCTAACCTAACCAAAA 59.329 37.037 0.00 0.00 0.00 2.44
2401 5558 9.081204 GATTTACCCTTCTAACCTAACCAAAAA 57.919 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 33 3.620761 CTTGGTTTCCGTTTACCGTTTC 58.379 45.455 0.00 0.00 37.23 2.78
37 39 3.852205 GCTTGAGCTTGGTTTCCGTTTAC 60.852 47.826 0.00 0.00 38.21 2.01
42 45 1.581447 GGCTTGAGCTTGGTTTCCG 59.419 57.895 2.66 0.00 41.70 4.30
44 47 0.519077 CTCGGCTTGAGCTTGGTTTC 59.481 55.000 2.66 0.00 41.70 2.78
85 88 3.788766 CTCCTTTTCCGCCGCGTG 61.789 66.667 12.58 3.43 0.00 5.34
87 90 2.552585 TACTCTCCTTTTCCGCCGCG 62.553 60.000 5.59 5.59 0.00 6.46
92 95 3.185797 CCACGTTTTACTCTCCTTTTCCG 59.814 47.826 0.00 0.00 0.00 4.30
136 139 1.073025 TGCTGTGCCACGGATCTTT 59.927 52.632 8.12 0.00 0.00 2.52
180 183 3.352338 CTGACGTAGGGCGGTCCAC 62.352 68.421 0.00 0.00 46.52 4.02
188 191 0.747255 CTGGATCCACTGACGTAGGG 59.253 60.000 11.44 0.00 0.00 3.53
244 254 0.829333 CCACTCCCAGATCCAGTGAG 59.171 60.000 11.45 4.15 40.07 3.51
360 390 4.988716 TGGCACCGTCGAGGACCT 62.989 66.667 6.70 0.00 45.00 3.85
379 409 0.811616 GACCATGCATCCACGAGTCC 60.812 60.000 0.00 0.00 0.00 3.85
507 564 4.278513 TTGGTCCCCTTGTGCCCG 62.279 66.667 0.00 0.00 0.00 6.13
508 565 2.283173 CTTGGTCCCCTTGTGCCC 60.283 66.667 0.00 0.00 0.00 5.36
510 567 1.273327 CATTTCTTGGTCCCCTTGTGC 59.727 52.381 0.00 0.00 0.00 4.57
511 568 1.273327 GCATTTCTTGGTCCCCTTGTG 59.727 52.381 0.00 0.00 0.00 3.33
512 569 1.133199 TGCATTTCTTGGTCCCCTTGT 60.133 47.619 0.00 0.00 0.00 3.16
513 570 1.631405 TGCATTTCTTGGTCCCCTTG 58.369 50.000 0.00 0.00 0.00 3.61
514 571 2.181975 CATGCATTTCTTGGTCCCCTT 58.818 47.619 0.00 0.00 0.00 3.95
660 2816 7.523293 TTCCTTAGATCATTTTCTTTGTGCA 57.477 32.000 0.00 0.00 0.00 4.57
661 2817 6.529477 GCTTCCTTAGATCATTTTCTTTGTGC 59.471 38.462 0.00 0.00 0.00 4.57
662 2818 6.744537 CGCTTCCTTAGATCATTTTCTTTGTG 59.255 38.462 0.00 0.00 0.00 3.33
669 2825 4.142381 GCCAACGCTTCCTTAGATCATTTT 60.142 41.667 0.00 0.00 0.00 1.82
671 2827 2.945668 GCCAACGCTTCCTTAGATCATT 59.054 45.455 0.00 0.00 0.00 2.57
672 2828 2.092968 TGCCAACGCTTCCTTAGATCAT 60.093 45.455 0.00 0.00 35.36 2.45
674 2830 2.024176 TGCCAACGCTTCCTTAGATC 57.976 50.000 0.00 0.00 35.36 2.75
676 2832 2.024176 GATGCCAACGCTTCCTTAGA 57.976 50.000 0.00 0.00 33.99 2.10
711 3210 4.481930 TTACTTTTTCTGTCACCGCATG 57.518 40.909 0.00 0.00 0.00 4.06
712 3211 5.473504 AGATTTACTTTTTCTGTCACCGCAT 59.526 36.000 0.00 0.00 0.00 4.73
716 3215 7.739498 TGGTAGATTTACTTTTTCTGTCACC 57.261 36.000 0.00 0.00 0.00 4.02
729 3228 7.705214 AGACGAGTGAAGTATGGTAGATTTAC 58.295 38.462 0.00 0.00 0.00 2.01
730 3229 7.876936 AGACGAGTGAAGTATGGTAGATTTA 57.123 36.000 0.00 0.00 0.00 1.40
732 3231 6.777213 AAGACGAGTGAAGTATGGTAGATT 57.223 37.500 0.00 0.00 0.00 2.40
736 3723 7.175467 TGAAAGTAAGACGAGTGAAGTATGGTA 59.825 37.037 0.00 0.00 0.00 3.25
737 3724 5.979288 AAGTAAGACGAGTGAAGTATGGT 57.021 39.130 0.00 0.00 0.00 3.55
741 3728 6.436261 CAGTGAAAGTAAGACGAGTGAAGTA 58.564 40.000 0.00 0.00 0.00 2.24
755 3742 5.376625 AGCACTTCATTTCCAGTGAAAGTA 58.623 37.500 3.48 0.00 43.39 2.24
764 3751 4.877823 CACTAGCATAGCACTTCATTTCCA 59.122 41.667 0.00 0.00 44.39 3.53
765 3752 4.260948 GCACTAGCATAGCACTTCATTTCC 60.261 45.833 0.00 0.00 44.39 3.13
785 3803 1.801913 CGCACGTGAGACCTAGCAC 60.802 63.158 22.23 0.00 0.00 4.40
847 3881 1.154035 GGAGTTGGCGGAAATTGCG 60.154 57.895 1.65 1.65 0.00 4.85
891 3925 2.093128 GGACGGGGTGGCAATATATAGG 60.093 54.545 0.00 0.00 0.00 2.57
931 3966 1.667724 CTCTTTGAGCTTGCGTATGGG 59.332 52.381 0.00 0.00 0.00 4.00
954 4005 1.543802 CTCCGCTGTTCTCTCTGTCTT 59.456 52.381 0.00 0.00 0.00 3.01
959 4010 0.610509 TCTGCTCCGCTGTTCTCTCT 60.611 55.000 0.00 0.00 0.00 3.10
960 4011 0.179140 CTCTGCTCCGCTGTTCTCTC 60.179 60.000 0.00 0.00 0.00 3.20
1236 4327 2.128507 GTACTCCTCCTCCGCCTGG 61.129 68.421 0.00 0.00 0.00 4.45
1463 4564 3.858868 GAGTCTGGGCGCACGAACA 62.859 63.158 10.83 0.00 0.00 3.18
1519 4621 1.379044 CTGGCCTGCAGGTAAAGGG 60.379 63.158 32.81 13.92 37.57 3.95
1525 4627 2.930019 TGCTACTGGCCTGCAGGT 60.930 61.111 32.81 16.46 40.92 4.00
1650 4790 4.114015 AGTACATCATCGGGGTGATCTA 57.886 45.455 0.00 0.00 36.72 1.98
1744 4900 7.329962 TGGAAATAGGACGCAAATATATACACG 59.670 37.037 0.00 0.00 0.00 4.49
1745 4901 8.542497 TGGAAATAGGACGCAAATATATACAC 57.458 34.615 0.00 0.00 0.00 2.90
1791 4948 5.593010 ACTGATTATCTCTACTTTGCGGTC 58.407 41.667 0.00 0.00 0.00 4.79
1793 4950 9.130312 GTATAACTGATTATCTCTACTTTGCGG 57.870 37.037 0.00 0.00 32.98 5.69
1799 4956 7.447545 TGCACGGTATAACTGATTATCTCTACT 59.552 37.037 0.00 0.00 32.98 2.57
1836 4993 2.684001 TGAACGGTGGATCCATACAC 57.316 50.000 19.62 4.42 40.98 2.90
1858 5015 6.481954 AAGTAACACGAATCTTAAAGCTGG 57.518 37.500 0.00 0.00 0.00 4.85
1876 5033 6.127675 ACGTTCTAAAACCAGCCAAAAAGTAA 60.128 34.615 0.00 0.00 31.27 2.24
1877 5034 5.357596 ACGTTCTAAAACCAGCCAAAAAGTA 59.642 36.000 0.00 0.00 31.27 2.24
1882 5039 3.547746 AGACGTTCTAAAACCAGCCAAA 58.452 40.909 0.00 0.00 31.27 3.28
1885 5042 2.876550 ACAAGACGTTCTAAAACCAGCC 59.123 45.455 0.00 0.00 31.27 4.85
1890 5047 8.556517 AGCATTAAAACAAGACGTTCTAAAAC 57.443 30.769 0.00 0.00 36.59 2.43
1896 5053 8.556517 ACTAAAAGCATTAAAACAAGACGTTC 57.443 30.769 0.00 0.00 36.59 3.95
1899 5056 7.273659 GCAACTAAAAGCATTAAAACAAGACG 58.726 34.615 0.00 0.00 0.00 4.18
1909 5066 7.995463 AAGAAAAACGCAACTAAAAGCATTA 57.005 28.000 0.00 0.00 0.00 1.90
1914 5071 6.253512 AGCAGAAAGAAAAACGCAACTAAAAG 59.746 34.615 0.00 0.00 0.00 2.27
1916 5073 5.646606 AGCAGAAAGAAAAACGCAACTAAA 58.353 33.333 0.00 0.00 0.00 1.85
1920 5077 2.789339 GGAGCAGAAAGAAAAACGCAAC 59.211 45.455 0.00 0.00 0.00 4.17
1921 5078 2.687935 AGGAGCAGAAAGAAAAACGCAA 59.312 40.909 0.00 0.00 0.00 4.85
1923 5080 4.023963 ACTTAGGAGCAGAAAGAAAAACGC 60.024 41.667 0.00 0.00 0.00 4.84
1924 5081 5.444122 CACTTAGGAGCAGAAAGAAAAACG 58.556 41.667 0.00 0.00 0.00 3.60
1926 5083 4.887071 TGCACTTAGGAGCAGAAAGAAAAA 59.113 37.500 0.00 0.00 34.36 1.94
1935 5092 4.157289 ACAAAATGATGCACTTAGGAGCAG 59.843 41.667 3.06 0.00 41.80 4.24
1936 5093 4.081406 ACAAAATGATGCACTTAGGAGCA 58.919 39.130 0.00 0.00 42.60 4.26
1937 5094 4.708726 ACAAAATGATGCACTTAGGAGC 57.291 40.909 0.00 0.00 0.00 4.70
1938 5095 9.643693 ATTAAAACAAAATGATGCACTTAGGAG 57.356 29.630 0.00 0.00 0.00 3.69
1952 5109 9.271828 GGAGAATGTGGTGAATTAAAACAAAAT 57.728 29.630 0.00 0.00 0.00 1.82
1955 5112 7.069331 AGTGGAGAATGTGGTGAATTAAAACAA 59.931 33.333 0.00 0.00 0.00 2.83
1956 5113 6.549364 AGTGGAGAATGTGGTGAATTAAAACA 59.451 34.615 0.00 0.00 0.00 2.83
1957 5114 6.981722 AGTGGAGAATGTGGTGAATTAAAAC 58.018 36.000 0.00 0.00 0.00 2.43
1978 5135 4.792068 TCCCTGCCCTTTATGAATAAGTG 58.208 43.478 0.00 0.00 0.00 3.16
1980 5137 5.885465 AGATCCCTGCCCTTTATGAATAAG 58.115 41.667 0.00 0.00 0.00 1.73
2007 5164 5.505654 GGGTGTATTTTGCACATTATCTCGG 60.506 44.000 0.00 0.00 38.51 4.63
2009 5166 6.318648 TCTGGGTGTATTTTGCACATTATCTC 59.681 38.462 0.00 0.00 38.51 2.75
2030 5187 0.251297 TGGGTGCATGAACCTTCTGG 60.251 55.000 22.74 0.00 40.35 3.86
2034 5191 2.086610 AGTTTGGGTGCATGAACCTT 57.913 45.000 22.74 1.03 40.35 3.50
2046 5203 2.093128 ACGGGCATTCTACTAGTTTGGG 60.093 50.000 0.00 0.00 0.00 4.12
2054 5211 1.676014 GCAACTCACGGGCATTCTACT 60.676 52.381 0.00 0.00 0.00 2.57
2055 5212 0.727398 GCAACTCACGGGCATTCTAC 59.273 55.000 0.00 0.00 0.00 2.59
2056 5213 0.613260 AGCAACTCACGGGCATTCTA 59.387 50.000 0.00 0.00 0.00 2.10
2057 5214 0.613260 TAGCAACTCACGGGCATTCT 59.387 50.000 0.00 0.00 0.00 2.40
2058 5215 0.727398 GTAGCAACTCACGGGCATTC 59.273 55.000 0.00 0.00 0.00 2.67
2059 5216 1.019278 CGTAGCAACTCACGGGCATT 61.019 55.000 0.00 0.00 34.57 3.56
2060 5217 1.447838 CGTAGCAACTCACGGGCAT 60.448 57.895 0.00 0.00 34.57 4.40
2061 5218 2.048597 CGTAGCAACTCACGGGCA 60.049 61.111 0.00 0.00 34.57 5.36
2073 5230 3.904136 TTATACGTTAGAGCCCGTAGC 57.096 47.619 0.00 0.00 42.17 3.58
2074 5231 6.005583 TCATTTATACGTTAGAGCCCGTAG 57.994 41.667 0.00 0.00 42.17 3.51
2075 5232 6.208644 GTTCATTTATACGTTAGAGCCCGTA 58.791 40.000 0.00 0.00 42.95 4.02
2076 5233 4.924305 TCATTTATACGTTAGAGCCCGT 57.076 40.909 0.00 0.00 40.87 5.28
2077 5234 4.446719 GGTTCATTTATACGTTAGAGCCCG 59.553 45.833 0.00 0.00 0.00 6.13
2078 5235 5.362263 TGGTTCATTTATACGTTAGAGCCC 58.638 41.667 0.00 0.00 0.00 5.19
2079 5236 6.913873 TTGGTTCATTTATACGTTAGAGCC 57.086 37.500 0.00 0.00 0.00 4.70
2107 5264 9.098355 CGTCAATCTTGAAGATGACCTTAATTA 57.902 33.333 21.15 0.00 38.67 1.40
2108 5265 7.414540 GCGTCAATCTTGAAGATGACCTTAATT 60.415 37.037 21.15 0.89 38.67 1.40
2109 5266 6.037610 GCGTCAATCTTGAAGATGACCTTAAT 59.962 38.462 21.15 0.79 38.67 1.40
2110 5267 5.351465 GCGTCAATCTTGAAGATGACCTTAA 59.649 40.000 21.15 0.80 38.67 1.85
2111 5268 4.870426 GCGTCAATCTTGAAGATGACCTTA 59.130 41.667 21.15 1.82 38.67 2.69
2112 5269 3.686726 GCGTCAATCTTGAAGATGACCTT 59.313 43.478 21.15 3.19 38.67 3.50
2113 5270 3.055530 AGCGTCAATCTTGAAGATGACCT 60.056 43.478 21.15 17.74 38.67 3.85
2114 5271 3.265791 AGCGTCAATCTTGAAGATGACC 58.734 45.455 21.15 16.57 38.67 4.02
2115 5272 3.928992 TGAGCGTCAATCTTGAAGATGAC 59.071 43.478 8.68 15.48 38.67 3.06
2116 5273 4.192429 TGAGCGTCAATCTTGAAGATGA 57.808 40.909 8.68 5.92 38.67 2.92
2117 5274 5.481200 AATGAGCGTCAATCTTGAAGATG 57.519 39.130 8.68 3.65 38.67 2.90
2118 5275 5.879223 AGAAATGAGCGTCAATCTTGAAGAT 59.121 36.000 0.97 0.97 38.67 2.40
2119 5276 5.240891 AGAAATGAGCGTCAATCTTGAAGA 58.759 37.500 9.58 0.00 38.67 2.87
2120 5277 5.447010 GGAGAAATGAGCGTCAATCTTGAAG 60.447 44.000 2.06 2.06 39.21 3.02
2121 5278 4.393062 GGAGAAATGAGCGTCAATCTTGAA 59.607 41.667 0.00 0.00 39.21 2.69
2122 5279 3.935203 GGAGAAATGAGCGTCAATCTTGA 59.065 43.478 7.54 0.00 30.12 3.02
2123 5280 3.064545 GGGAGAAATGAGCGTCAATCTTG 59.935 47.826 7.54 0.00 30.12 3.02
2124 5281 3.054802 AGGGAGAAATGAGCGTCAATCTT 60.055 43.478 7.54 0.00 30.12 2.40
2125 5282 2.503356 AGGGAGAAATGAGCGTCAATCT 59.497 45.455 6.46 6.46 31.85 2.40
2126 5283 2.869192 GAGGGAGAAATGAGCGTCAATC 59.131 50.000 0.00 0.00 0.00 2.67
2127 5284 2.237143 TGAGGGAGAAATGAGCGTCAAT 59.763 45.455 0.00 0.00 0.00 2.57
2128 5285 1.623311 TGAGGGAGAAATGAGCGTCAA 59.377 47.619 0.00 0.00 0.00 3.18
2129 5286 1.266178 TGAGGGAGAAATGAGCGTCA 58.734 50.000 0.00 0.00 0.00 4.35
2130 5287 2.611225 ATGAGGGAGAAATGAGCGTC 57.389 50.000 0.00 0.00 0.00 5.19
2131 5288 2.223829 CGTATGAGGGAGAAATGAGCGT 60.224 50.000 0.00 0.00 0.00 5.07
2132 5289 2.223829 ACGTATGAGGGAGAAATGAGCG 60.224 50.000 0.00 0.00 0.00 5.03
2133 5290 3.385577 GACGTATGAGGGAGAAATGAGC 58.614 50.000 0.00 0.00 0.00 4.26
2134 5291 3.551046 CGGACGTATGAGGGAGAAATGAG 60.551 52.174 0.00 0.00 0.00 2.90
2135 5292 2.361119 CGGACGTATGAGGGAGAAATGA 59.639 50.000 0.00 0.00 0.00 2.57
2136 5293 2.545952 CCGGACGTATGAGGGAGAAATG 60.546 54.545 0.00 0.00 0.00 2.32
2137 5294 1.687123 CCGGACGTATGAGGGAGAAAT 59.313 52.381 0.00 0.00 0.00 2.17
2138 5295 1.108776 CCGGACGTATGAGGGAGAAA 58.891 55.000 0.00 0.00 0.00 2.52
2139 5296 0.256752 TCCGGACGTATGAGGGAGAA 59.743 55.000 0.00 0.00 0.00 2.87
2140 5297 0.465097 GTCCGGACGTATGAGGGAGA 60.465 60.000 20.85 0.00 0.00 3.71
2141 5298 2.031360 GTCCGGACGTATGAGGGAG 58.969 63.158 20.85 0.00 0.00 4.30
2142 5299 4.247781 GTCCGGACGTATGAGGGA 57.752 61.111 20.85 0.00 0.00 4.20
2152 5309 0.665369 ATGTTCGAACACGTCCGGAC 60.665 55.000 31.87 25.28 42.51 4.79
2153 5310 0.387622 GATGTTCGAACACGTCCGGA 60.388 55.000 31.87 0.00 42.51 5.14
2154 5311 0.665068 TGATGTTCGAACACGTCCGG 60.665 55.000 31.87 0.00 42.51 5.14
2155 5312 1.133407 TTGATGTTCGAACACGTCCG 58.867 50.000 31.87 0.00 42.51 4.79
2156 5313 2.285756 TGTTTGATGTTCGAACACGTCC 59.714 45.455 31.87 20.35 43.69 4.79
2157 5314 3.531982 CTGTTTGATGTTCGAACACGTC 58.468 45.455 31.87 25.26 43.69 4.34
2158 5315 2.286833 CCTGTTTGATGTTCGAACACGT 59.713 45.455 31.87 18.33 43.69 4.49
2159 5316 2.903678 CCTGTTTGATGTTCGAACACG 58.096 47.619 31.87 14.49 43.69 4.49
2160 5317 2.650608 GCCTGTTTGATGTTCGAACAC 58.349 47.619 31.87 23.82 43.69 3.32
2161 5318 1.262950 CGCCTGTTTGATGTTCGAACA 59.737 47.619 31.41 31.41 45.67 3.18
2162 5319 1.950472 CGCCTGTTTGATGTTCGAAC 58.050 50.000 21.42 21.42 40.38 3.95
2163 5320 0.237235 GCGCCTGTTTGATGTTCGAA 59.763 50.000 0.00 0.00 0.00 3.71
2164 5321 1.573829 GGCGCCTGTTTGATGTTCGA 61.574 55.000 22.15 0.00 0.00 3.71
2165 5322 1.154225 GGCGCCTGTTTGATGTTCG 60.154 57.895 22.15 0.00 0.00 3.95
2166 5323 1.212751 GGGCGCCTGTTTGATGTTC 59.787 57.895 28.56 0.00 0.00 3.18
2167 5324 1.526575 CTGGGCGCCTGTTTGATGTT 61.527 55.000 28.56 0.00 0.00 2.71
2168 5325 1.973281 CTGGGCGCCTGTTTGATGT 60.973 57.895 28.56 0.00 0.00 3.06
2169 5326 2.879907 CTGGGCGCCTGTTTGATG 59.120 61.111 28.56 3.87 0.00 3.07
2170 5327 3.064324 GCTGGGCGCCTGTTTGAT 61.064 61.111 28.56 0.00 0.00 2.57
2171 5328 4.577677 TGCTGGGCGCCTGTTTGA 62.578 61.111 28.56 2.58 38.05 2.69
2172 5329 4.047059 CTGCTGGGCGCCTGTTTG 62.047 66.667 28.56 12.86 38.05 2.93
2182 5339 0.906282 ATTTTGGGAAGCCTGCTGGG 60.906 55.000 12.06 1.66 38.36 4.45
2183 5340 0.533951 GATTTTGGGAAGCCTGCTGG 59.466 55.000 5.03 5.03 0.00 4.85
2184 5341 0.533951 GGATTTTGGGAAGCCTGCTG 59.466 55.000 0.00 0.00 0.00 4.41
2185 5342 0.411058 AGGATTTTGGGAAGCCTGCT 59.589 50.000 0.00 0.00 0.00 4.24
2186 5343 1.751351 GTAGGATTTTGGGAAGCCTGC 59.249 52.381 5.87 0.89 0.00 4.85
2187 5344 2.024941 AGGTAGGATTTTGGGAAGCCTG 60.025 50.000 5.87 0.00 0.00 4.85
2188 5345 2.288525 AGGTAGGATTTTGGGAAGCCT 58.711 47.619 0.95 0.95 0.00 4.58
2189 5346 2.828661 AGGTAGGATTTTGGGAAGCC 57.171 50.000 0.00 0.00 0.00 4.35
2190 5347 2.683362 CGAAGGTAGGATTTTGGGAAGC 59.317 50.000 0.00 0.00 0.00 3.86
2191 5348 3.939592 GACGAAGGTAGGATTTTGGGAAG 59.060 47.826 0.00 0.00 0.00 3.46
2192 5349 3.307904 GGACGAAGGTAGGATTTTGGGAA 60.308 47.826 0.00 0.00 0.00 3.97
2193 5350 2.237893 GGACGAAGGTAGGATTTTGGGA 59.762 50.000 0.00 0.00 0.00 4.37
2194 5351 2.640184 GGACGAAGGTAGGATTTTGGG 58.360 52.381 0.00 0.00 0.00 4.12
2195 5352 2.277084 CGGACGAAGGTAGGATTTTGG 58.723 52.381 0.00 0.00 0.00 3.28
2196 5353 2.093869 TCCGGACGAAGGTAGGATTTTG 60.094 50.000 0.00 0.00 30.80 2.44
2197 5354 2.181975 TCCGGACGAAGGTAGGATTTT 58.818 47.619 0.00 0.00 30.80 1.82
2198 5355 1.856629 TCCGGACGAAGGTAGGATTT 58.143 50.000 0.00 0.00 30.80 2.17
2199 5356 2.083628 ATCCGGACGAAGGTAGGATT 57.916 50.000 6.12 0.00 39.39 3.01
2200 5357 2.083628 AATCCGGACGAAGGTAGGAT 57.916 50.000 6.12 0.00 42.27 3.24
2201 5358 2.734755 TAATCCGGACGAAGGTAGGA 57.265 50.000 6.12 0.00 37.43 2.94
2202 5359 2.230750 GGATAATCCGGACGAAGGTAGG 59.769 54.545 6.12 0.00 0.00 3.18
2203 5360 2.889045 TGGATAATCCGGACGAAGGTAG 59.111 50.000 6.12 0.00 40.17 3.18
2204 5361 2.948115 TGGATAATCCGGACGAAGGTA 58.052 47.619 6.12 0.00 40.17 3.08
2205 5362 1.784358 TGGATAATCCGGACGAAGGT 58.216 50.000 6.12 0.00 40.17 3.50
2206 5363 2.299013 TGATGGATAATCCGGACGAAGG 59.701 50.000 6.12 0.00 40.17 3.46
2207 5364 3.660501 TGATGGATAATCCGGACGAAG 57.339 47.619 6.12 0.00 40.17 3.79
2208 5365 3.323691 ACATGATGGATAATCCGGACGAA 59.676 43.478 6.12 0.00 40.17 3.85
2209 5366 2.897326 ACATGATGGATAATCCGGACGA 59.103 45.455 6.12 0.00 40.17 4.20
2210 5367 3.254060 GACATGATGGATAATCCGGACG 58.746 50.000 6.12 0.00 40.17 4.79
2211 5368 4.248859 CTGACATGATGGATAATCCGGAC 58.751 47.826 6.12 0.00 40.17 4.79
2212 5369 3.306989 GCTGACATGATGGATAATCCGGA 60.307 47.826 6.61 6.61 40.17 5.14
2213 5370 3.005554 GCTGACATGATGGATAATCCGG 58.994 50.000 0.00 0.00 40.17 5.14
2214 5371 3.931468 GAGCTGACATGATGGATAATCCG 59.069 47.826 0.00 0.00 40.17 4.18
2215 5372 4.260170 GGAGCTGACATGATGGATAATCC 58.740 47.826 0.00 0.00 36.96 3.01
2216 5373 4.903054 TGGAGCTGACATGATGGATAATC 58.097 43.478 0.00 0.00 35.67 1.75
2217 5374 4.987963 TGGAGCTGACATGATGGATAAT 57.012 40.909 0.00 0.00 0.00 1.28
2218 5375 4.080413 TGTTGGAGCTGACATGATGGATAA 60.080 41.667 0.00 0.00 0.00 1.75
2219 5376 3.455543 TGTTGGAGCTGACATGATGGATA 59.544 43.478 0.00 0.00 0.00 2.59
2220 5377 2.240414 TGTTGGAGCTGACATGATGGAT 59.760 45.455 0.00 0.00 0.00 3.41
2221 5378 1.629861 TGTTGGAGCTGACATGATGGA 59.370 47.619 0.00 0.00 0.00 3.41
2222 5379 1.741706 GTGTTGGAGCTGACATGATGG 59.258 52.381 0.00 0.00 0.00 3.51
2223 5380 2.161012 GTGTGTTGGAGCTGACATGATG 59.839 50.000 0.00 0.00 0.00 3.07
2224 5381 2.430465 GTGTGTTGGAGCTGACATGAT 58.570 47.619 0.00 0.00 0.00 2.45
2225 5382 1.873486 CGTGTGTTGGAGCTGACATGA 60.873 52.381 0.00 0.00 0.00 3.07
2226 5383 0.514255 CGTGTGTTGGAGCTGACATG 59.486 55.000 0.00 0.00 0.00 3.21
2227 5384 0.603707 CCGTGTGTTGGAGCTGACAT 60.604 55.000 0.00 0.00 0.00 3.06
2228 5385 1.227527 CCGTGTGTTGGAGCTGACA 60.228 57.895 0.00 0.00 0.00 3.58
2229 5386 1.222115 GACCGTGTGTTGGAGCTGAC 61.222 60.000 0.00 0.00 0.00 3.51
2230 5387 1.069090 GACCGTGTGTTGGAGCTGA 59.931 57.895 0.00 0.00 0.00 4.26
2231 5388 1.961277 GGACCGTGTGTTGGAGCTG 60.961 63.158 0.00 0.00 0.00 4.24
2232 5389 2.426023 GGACCGTGTGTTGGAGCT 59.574 61.111 0.00 0.00 0.00 4.09
2233 5390 3.041940 CGGACCGTGTGTTGGAGC 61.042 66.667 5.48 0.00 0.00 4.70
2234 5391 2.357034 CCGGACCGTGTGTTGGAG 60.357 66.667 13.94 0.00 0.00 3.86
2235 5392 2.838693 TCCGGACCGTGTGTTGGA 60.839 61.111 13.94 0.00 31.52 3.53
2236 5393 2.663852 GTCCGGACCGTGTGTTGG 60.664 66.667 24.75 0.00 0.00 3.77
2237 5394 2.107343 TGTCCGGACCGTGTGTTG 59.893 61.111 31.19 0.00 0.00 3.33
2238 5395 2.107546 GTGTCCGGACCGTGTGTT 59.892 61.111 31.19 0.00 0.00 3.32
2239 5396 2.241479 TTTGTGTCCGGACCGTGTGT 62.241 55.000 31.19 0.00 0.00 3.72
2240 5397 1.090625 TTTTGTGTCCGGACCGTGTG 61.091 55.000 31.19 0.00 0.00 3.82
2241 5398 0.392729 TTTTTGTGTCCGGACCGTGT 60.393 50.000 31.19 0.00 0.00 4.49
2242 5399 0.028374 GTTTTTGTGTCCGGACCGTG 59.972 55.000 31.19 4.52 0.00 4.94
2243 5400 0.107557 AGTTTTTGTGTCCGGACCGT 60.108 50.000 31.19 4.34 0.00 4.83
2244 5401 0.584876 GAGTTTTTGTGTCCGGACCG 59.415 55.000 31.19 6.99 0.00 4.79
2245 5402 0.949397 GGAGTTTTTGTGTCCGGACC 59.051 55.000 31.19 21.86 0.00 4.46
2246 5403 1.670791 TGGAGTTTTTGTGTCCGGAC 58.329 50.000 28.17 28.17 32.51 4.79
2247 5404 2.500229 GATGGAGTTTTTGTGTCCGGA 58.500 47.619 0.00 0.00 32.51 5.14
2248 5405 1.539827 GGATGGAGTTTTTGTGTCCGG 59.460 52.381 0.00 0.00 32.51 5.14
2249 5406 1.539827 GGGATGGAGTTTTTGTGTCCG 59.460 52.381 0.00 0.00 32.51 4.79
2250 5407 2.593026 TGGGATGGAGTTTTTGTGTCC 58.407 47.619 0.00 0.00 0.00 4.02
2251 5408 3.826157 TCATGGGATGGAGTTTTTGTGTC 59.174 43.478 0.00 0.00 0.00 3.67
2252 5409 3.843422 TCATGGGATGGAGTTTTTGTGT 58.157 40.909 0.00 0.00 0.00 3.72
2253 5410 4.142093 GGATCATGGGATGGAGTTTTTGTG 60.142 45.833 0.00 0.00 32.67 3.33
2254 5411 4.026052 GGATCATGGGATGGAGTTTTTGT 58.974 43.478 0.00 0.00 32.67 2.83
2255 5412 4.025360 TGGATCATGGGATGGAGTTTTTG 58.975 43.478 0.00 0.00 32.67 2.44
2256 5413 4.026052 GTGGATCATGGGATGGAGTTTTT 58.974 43.478 0.00 0.00 32.67 1.94
2257 5414 3.270433 AGTGGATCATGGGATGGAGTTTT 59.730 43.478 0.00 0.00 32.67 2.43
2258 5415 2.854967 AGTGGATCATGGGATGGAGTTT 59.145 45.455 0.00 0.00 32.67 2.66
2259 5416 2.441001 GAGTGGATCATGGGATGGAGTT 59.559 50.000 0.00 0.00 32.67 3.01
2260 5417 2.053244 GAGTGGATCATGGGATGGAGT 58.947 52.381 0.00 0.00 32.67 3.85
2261 5418 2.336891 AGAGTGGATCATGGGATGGAG 58.663 52.381 0.00 0.00 32.67 3.86
2262 5419 2.502068 AGAGTGGATCATGGGATGGA 57.498 50.000 0.00 0.00 32.67 3.41
2263 5420 3.484407 GAAAGAGTGGATCATGGGATGG 58.516 50.000 0.00 0.00 32.67 3.51
2264 5421 3.484407 GGAAAGAGTGGATCATGGGATG 58.516 50.000 0.00 0.00 32.67 3.51
2265 5422 2.444766 GGGAAAGAGTGGATCATGGGAT 59.555 50.000 0.00 0.00 36.13 3.85
2266 5423 1.846439 GGGAAAGAGTGGATCATGGGA 59.154 52.381 0.00 0.00 0.00 4.37
2267 5424 1.565759 TGGGAAAGAGTGGATCATGGG 59.434 52.381 0.00 0.00 0.00 4.00
2268 5425 3.589951 ATGGGAAAGAGTGGATCATGG 57.410 47.619 0.00 0.00 0.00 3.66
2269 5426 5.198965 AGAAATGGGAAAGAGTGGATCATG 58.801 41.667 0.00 0.00 0.00 3.07
2270 5427 5.463051 AGAAATGGGAAAGAGTGGATCAT 57.537 39.130 0.00 0.00 0.00 2.45
2271 5428 4.934797 AGAAATGGGAAAGAGTGGATCA 57.065 40.909 0.00 0.00 0.00 2.92
2272 5429 4.142293 GCAAGAAATGGGAAAGAGTGGATC 60.142 45.833 0.00 0.00 0.00 3.36
2273 5430 3.766051 GCAAGAAATGGGAAAGAGTGGAT 59.234 43.478 0.00 0.00 0.00 3.41
2274 5431 3.157087 GCAAGAAATGGGAAAGAGTGGA 58.843 45.455 0.00 0.00 0.00 4.02
2275 5432 2.232208 GGCAAGAAATGGGAAAGAGTGG 59.768 50.000 0.00 0.00 0.00 4.00
2276 5433 2.095059 CGGCAAGAAATGGGAAAGAGTG 60.095 50.000 0.00 0.00 0.00 3.51
2277 5434 2.162681 CGGCAAGAAATGGGAAAGAGT 58.837 47.619 0.00 0.00 0.00 3.24
2278 5435 1.474077 CCGGCAAGAAATGGGAAAGAG 59.526 52.381 0.00 0.00 0.00 2.85
2279 5436 1.074727 TCCGGCAAGAAATGGGAAAGA 59.925 47.619 0.00 0.00 0.00 2.52
2280 5437 1.474077 CTCCGGCAAGAAATGGGAAAG 59.526 52.381 0.00 0.00 0.00 2.62
2281 5438 1.544724 CTCCGGCAAGAAATGGGAAA 58.455 50.000 0.00 0.00 0.00 3.13
2282 5439 0.965363 GCTCCGGCAAGAAATGGGAA 60.965 55.000 0.00 0.00 38.54 3.97
2283 5440 1.378514 GCTCCGGCAAGAAATGGGA 60.379 57.895 0.00 0.00 38.54 4.37
2284 5441 2.418083 GGCTCCGGCAAGAAATGGG 61.418 63.158 0.00 0.00 40.87 4.00
2285 5442 1.379044 AGGCTCCGGCAAGAAATGG 60.379 57.895 0.00 0.00 40.87 3.16
2286 5443 1.379642 GGAGGCTCCGGCAAGAAATG 61.380 60.000 19.53 0.00 40.87 2.32
2287 5444 1.077429 GGAGGCTCCGGCAAGAAAT 60.077 57.895 19.53 0.00 40.87 2.17
2288 5445 2.351276 GGAGGCTCCGGCAAGAAA 59.649 61.111 19.53 0.00 40.87 2.52
2289 5446 3.717294 GGGAGGCTCCGGCAAGAA 61.717 66.667 26.54 0.00 37.43 2.52
2298 5455 4.439901 AGGGGGAAGGGGAGGCTC 62.440 72.222 5.78 5.78 0.00 4.70
2299 5456 4.439901 GAGGGGGAAGGGGAGGCT 62.440 72.222 0.00 0.00 0.00 4.58
2302 5459 3.945064 AACCGAGGGGGAAGGGGAG 62.945 68.421 0.00 0.00 39.97 4.30
2303 5460 3.510432 AAACCGAGGGGGAAGGGGA 62.510 63.158 0.00 0.00 39.97 4.81
2304 5461 2.939353 AAACCGAGGGGGAAGGGG 60.939 66.667 0.00 0.00 39.97 4.79
2305 5462 2.675371 GAAACCGAGGGGGAAGGG 59.325 66.667 0.00 0.00 39.97 3.95
2306 5463 1.923909 AGGAAACCGAGGGGGAAGG 60.924 63.158 0.00 0.00 39.97 3.46
2307 5464 1.299976 CAGGAAACCGAGGGGGAAG 59.700 63.158 0.00 0.00 39.97 3.46
2308 5465 2.902457 GCAGGAAACCGAGGGGGAA 61.902 63.158 0.00 0.00 39.97 3.97
2309 5466 3.327404 GCAGGAAACCGAGGGGGA 61.327 66.667 0.00 0.00 39.97 4.81
2310 5467 4.426313 GGCAGGAAACCGAGGGGG 62.426 72.222 0.00 0.00 43.62 5.40
2317 5474 0.177373 CCCTACTACGGCAGGAAACC 59.823 60.000 0.00 0.00 33.42 3.27
2318 5475 0.461516 GCCCTACTACGGCAGGAAAC 60.462 60.000 0.00 0.00 46.27 2.78
2319 5476 1.902556 GCCCTACTACGGCAGGAAA 59.097 57.895 0.00 0.00 46.27 3.13
2320 5477 3.625099 GCCCTACTACGGCAGGAA 58.375 61.111 0.00 0.00 46.27 3.36
2326 5483 1.868519 GCGAGAAATGCCCTACTACGG 60.869 57.143 0.00 0.00 0.00 4.02
2327 5484 1.067212 AGCGAGAAATGCCCTACTACG 59.933 52.381 0.00 0.00 0.00 3.51
2328 5485 2.474816 CAGCGAGAAATGCCCTACTAC 58.525 52.381 0.00 0.00 0.00 2.73
2329 5486 1.412710 CCAGCGAGAAATGCCCTACTA 59.587 52.381 0.00 0.00 0.00 1.82
2330 5487 0.179000 CCAGCGAGAAATGCCCTACT 59.821 55.000 0.00 0.00 0.00 2.57
2331 5488 0.178068 TCCAGCGAGAAATGCCCTAC 59.822 55.000 0.00 0.00 0.00 3.18
2332 5489 0.465705 CTCCAGCGAGAAATGCCCTA 59.534 55.000 0.00 0.00 38.52 3.53
2333 5490 1.222936 CTCCAGCGAGAAATGCCCT 59.777 57.895 0.00 0.00 38.52 5.19
2334 5491 1.092345 GTCTCCAGCGAGAAATGCCC 61.092 60.000 0.00 0.00 46.74 5.36
2335 5492 1.092345 GGTCTCCAGCGAGAAATGCC 61.092 60.000 0.00 0.00 46.74 4.40
2336 5493 1.092345 GGGTCTCCAGCGAGAAATGC 61.092 60.000 0.00 0.00 46.74 3.56
2337 5494 0.539051 AGGGTCTCCAGCGAGAAATG 59.461 55.000 0.00 0.00 46.74 2.32
2338 5495 1.065854 CAAGGGTCTCCAGCGAGAAAT 60.066 52.381 0.00 0.00 46.74 2.17
2339 5496 0.321671 CAAGGGTCTCCAGCGAGAAA 59.678 55.000 0.00 0.00 46.74 2.52
2340 5497 0.541998 TCAAGGGTCTCCAGCGAGAA 60.542 55.000 0.00 0.00 46.74 2.87
2341 5498 0.541998 TTCAAGGGTCTCCAGCGAGA 60.542 55.000 0.00 0.00 43.08 4.04
2342 5499 0.108424 CTTCAAGGGTCTCCAGCGAG 60.108 60.000 0.00 0.00 37.48 5.03
2343 5500 1.975327 CTTCAAGGGTCTCCAGCGA 59.025 57.895 0.00 0.00 34.83 4.93
2344 5501 1.743252 GCTTCAAGGGTCTCCAGCG 60.743 63.158 0.00 0.00 34.83 5.18
2345 5502 0.250901 TTGCTTCAAGGGTCTCCAGC 60.251 55.000 0.00 0.00 34.83 4.85
2346 5503 1.072965 AGTTGCTTCAAGGGTCTCCAG 59.927 52.381 0.00 0.00 34.83 3.86
2347 5504 1.140312 AGTTGCTTCAAGGGTCTCCA 58.860 50.000 0.00 0.00 34.83 3.86
2348 5505 3.055094 TGATAGTTGCTTCAAGGGTCTCC 60.055 47.826 0.00 0.00 0.00 3.71
2349 5506 4.207891 TGATAGTTGCTTCAAGGGTCTC 57.792 45.455 0.00 0.00 0.00 3.36
2350 5507 4.640771 TTGATAGTTGCTTCAAGGGTCT 57.359 40.909 0.00 0.00 0.00 3.85
2351 5508 5.393461 CCATTTGATAGTTGCTTCAAGGGTC 60.393 44.000 0.00 0.00 33.68 4.46
2352 5509 4.463891 CCATTTGATAGTTGCTTCAAGGGT 59.536 41.667 0.00 0.00 33.68 4.34
2353 5510 4.706476 TCCATTTGATAGTTGCTTCAAGGG 59.294 41.667 0.00 0.00 33.68 3.95
2354 5511 5.902613 TCCATTTGATAGTTGCTTCAAGG 57.097 39.130 0.00 0.00 33.68 3.61
2355 5512 9.294030 GTAAATCCATTTGATAGTTGCTTCAAG 57.706 33.333 0.00 0.00 33.68 3.02
2356 5513 8.250332 GGTAAATCCATTTGATAGTTGCTTCAA 58.750 33.333 0.00 0.00 35.97 2.69
2357 5514 7.147915 GGGTAAATCCATTTGATAGTTGCTTCA 60.148 37.037 0.00 0.00 38.11 3.02
2358 5515 7.068716 AGGGTAAATCCATTTGATAGTTGCTTC 59.931 37.037 0.00 0.00 38.11 3.86
2359 5516 6.897413 AGGGTAAATCCATTTGATAGTTGCTT 59.103 34.615 0.00 0.00 38.11 3.91
2360 5517 6.435164 AGGGTAAATCCATTTGATAGTTGCT 58.565 36.000 0.00 0.00 38.11 3.91
2361 5518 6.715347 AGGGTAAATCCATTTGATAGTTGC 57.285 37.500 0.00 0.00 38.11 4.17
2362 5519 8.525290 AGAAGGGTAAATCCATTTGATAGTTG 57.475 34.615 0.00 0.00 40.53 3.16
2364 5521 9.628500 GTTAGAAGGGTAAATCCATTTGATAGT 57.372 33.333 0.00 0.00 40.53 2.12
2365 5522 9.067986 GGTTAGAAGGGTAAATCCATTTGATAG 57.932 37.037 0.00 0.00 40.53 2.08
2366 5523 8.787818 AGGTTAGAAGGGTAAATCCATTTGATA 58.212 33.333 0.00 0.00 40.53 2.15
2367 5524 7.652554 AGGTTAGAAGGGTAAATCCATTTGAT 58.347 34.615 0.00 0.00 40.53 2.57
2368 5525 7.039722 AGGTTAGAAGGGTAAATCCATTTGA 57.960 36.000 0.00 0.00 40.53 2.69
2369 5526 8.683615 GTTAGGTTAGAAGGGTAAATCCATTTG 58.316 37.037 0.00 0.00 40.53 2.32
2370 5527 7.837689 GGTTAGGTTAGAAGGGTAAATCCATTT 59.162 37.037 0.00 0.00 40.53 2.32
2371 5528 7.036425 TGGTTAGGTTAGAAGGGTAAATCCATT 60.036 37.037 0.00 0.00 43.33 3.16
2372 5529 6.449041 TGGTTAGGTTAGAAGGGTAAATCCAT 59.551 38.462 0.00 0.00 38.11 3.41
2373 5530 5.791664 TGGTTAGGTTAGAAGGGTAAATCCA 59.208 40.000 0.00 0.00 38.11 3.41
2374 5531 6.317663 TGGTTAGGTTAGAAGGGTAAATCC 57.682 41.667 0.00 0.00 0.00 3.01
2375 5532 8.640063 TTTTGGTTAGGTTAGAAGGGTAAATC 57.360 34.615 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.