Multiple sequence alignment - TraesCS2A01G493500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G493500 chr2A 100.000 3849 0 0 1 3849 725910903 725914751 0.000000e+00 7108.0
1 TraesCS2A01G493500 chr2A 96.347 219 8 0 366 584 756119522 756119740 1.020000e-95 361.0
2 TraesCS2A01G493500 chr2A 94.619 223 12 0 366 588 763213603 763213825 2.850000e-91 346.0
3 TraesCS2A01G493500 chr2B 90.422 1681 102 26 1477 3130 716552065 716553713 0.000000e+00 2158.0
4 TraesCS2A01G493500 chr2B 94.246 869 32 10 623 1478 716551165 716552028 0.000000e+00 1312.0
5 TraesCS2A01G493500 chr2B 87.469 806 77 20 1980 2768 792683422 792682624 0.000000e+00 907.0
6 TraesCS2A01G493500 chr2B 88.391 379 44 0 999 1377 792683889 792683511 1.260000e-124 457.0
7 TraesCS2A01G493500 chr2B 92.340 235 16 2 355 587 24850381 24850147 2.220000e-87 333.0
8 TraesCS2A01G493500 chr2D 95.533 1209 43 6 1926 3130 590931104 590929903 0.000000e+00 1923.0
9 TraesCS2A01G493500 chr2D 94.416 788 24 7 599 1381 590931943 590931171 0.000000e+00 1194.0
10 TraesCS2A01G493500 chr2D 85.549 173 14 6 98 262 27073492 27073323 1.840000e-38 171.0
11 TraesCS2A01G493500 chr2D 85.542 166 17 5 98 259 295281919 295282081 2.380000e-37 167.0
12 TraesCS2A01G493500 chr2D 90.991 111 6 2 258 368 590932073 590931967 3.100000e-31 147.0
13 TraesCS2A01G493500 chr2D 88.172 93 8 2 1486 1575 569346592 569346684 1.460000e-19 108.0
14 TraesCS2A01G493500 chr2D 83.333 72 11 1 1523 1594 2496680 2496750 8.930000e-07 65.8
15 TraesCS2A01G493500 chr1A 80.864 648 78 20 3229 3849 401214878 401215506 5.820000e-128 468.0
16 TraesCS2A01G493500 chr1A 97.260 219 6 0 366 584 4495112 4494894 4.700000e-99 372.0
17 TraesCS2A01G493500 chr4B 79.753 647 93 25 3227 3849 665303237 665303869 5.910000e-118 435.0
18 TraesCS2A01G493500 chr4B 91.915 235 16 3 364 597 634730314 634730546 3.710000e-85 326.0
19 TraesCS2A01G493500 chr7A 95.000 220 11 0 366 585 325713220 325713439 2.850000e-91 346.0
20 TraesCS2A01G493500 chr7A 85.333 75 10 1 1494 1568 712807799 712807726 4.120000e-10 76.8
21 TraesCS2A01G493500 chr1B 94.196 224 13 0 365 588 497751368 497751145 3.680000e-90 342.0
22 TraesCS2A01G493500 chr1B 91.566 83 7 0 3230 3312 663612976 663613058 8.740000e-22 115.0
23 TraesCS2A01G493500 chr7B 93.421 228 13 2 365 592 152487097 152486872 1.710000e-88 337.0
24 TraesCS2A01G493500 chr5B 93.392 227 15 0 362 588 270053843 270054069 1.710000e-88 337.0
25 TraesCS2A01G493500 chr5B 84.211 114 14 3 1479 1589 417662884 417662996 1.460000e-19 108.0
26 TraesCS2A01G493500 chr4D 86.628 172 11 4 98 262 274232643 274232477 3.060000e-41 180.0
27 TraesCS2A01G493500 chr1D 84.127 189 25 4 1477 1664 462155511 462155327 1.100000e-40 178.0
28 TraesCS2A01G493500 chr1D 79.048 105 16 5 3227 3330 416130174 416130273 2.480000e-07 67.6
29 TraesCS2A01G493500 chr7D 86.471 170 12 6 97 259 549295285 549295450 3.950000e-40 176.0
30 TraesCS2A01G493500 chr7D 86.061 165 13 5 102 259 94122886 94123047 6.610000e-38 169.0
31 TraesCS2A01G493500 chr3D 86.667 165 12 6 102 259 525471113 525470952 1.420000e-39 174.0
32 TraesCS2A01G493500 chr5D 86.228 167 13 7 101 260 117356153 117355990 5.110000e-39 172.0
33 TraesCS2A01G493500 chr5A 86.145 166 13 5 101 259 17604076 17604238 1.840000e-38 171.0
34 TraesCS2A01G493500 chr6D 85.380 171 15 5 99 262 204160015 204160182 6.610000e-38 169.0
35 TraesCS2A01G493500 chr6D 84.348 115 11 6 1479 1589 315601528 315601639 5.260000e-19 106.0
36 TraesCS2A01G493500 chr6D 88.235 85 9 1 281 365 93520030 93520113 2.450000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G493500 chr2A 725910903 725914751 3848 False 7108 7108 100.000000 1 3849 1 chr2A.!!$F1 3848
1 TraesCS2A01G493500 chr2B 716551165 716553713 2548 False 1735 2158 92.334000 623 3130 2 chr2B.!!$F1 2507
2 TraesCS2A01G493500 chr2B 792682624 792683889 1265 True 682 907 87.930000 999 2768 2 chr2B.!!$R2 1769
3 TraesCS2A01G493500 chr2D 590929903 590932073 2170 True 1088 1923 93.646667 258 3130 3 chr2D.!!$R2 2872
4 TraesCS2A01G493500 chr1A 401214878 401215506 628 False 468 468 80.864000 3229 3849 1 chr1A.!!$F1 620
5 TraesCS2A01G493500 chr4B 665303237 665303869 632 False 435 435 79.753000 3227 3849 1 chr4B.!!$F2 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.036732 AGAACATGCATGTCACCCGT 59.963 50.0 31.45 15.76 40.8 5.28 F
303 304 0.099436 GCTCGATGATTGGTTGTGGC 59.901 55.0 0.00 0.00 0.0 5.01 F
1654 1760 0.106894 GCTAAGGGCGGTGCTAGAAT 59.893 55.0 0.00 0.00 0.0 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 1934 0.179067 ACGTCCAGCCTTCGTTTTCA 60.179 50.0 0.00 0.0 34.07 2.69 R
1900 2007 0.240145 CGGCTACAAGACAGTCGACA 59.760 55.0 19.50 0.0 43.67 4.35 R
3345 3498 0.034337 TGTAGTGGCTCACCGTTTCC 59.966 55.0 2.18 0.0 39.70 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.424566 CACCGCCACTGCATTGCC 62.425 66.667 6.12 0.00 37.32 4.52
28 29 3.078836 GCCACTGCATTGCCCCAT 61.079 61.111 6.12 0.00 37.47 4.00
29 30 1.757731 GCCACTGCATTGCCCCATA 60.758 57.895 6.12 0.00 37.47 2.74
30 31 1.117142 GCCACTGCATTGCCCCATAT 61.117 55.000 6.12 0.00 37.47 1.78
31 32 1.822854 GCCACTGCATTGCCCCATATA 60.823 52.381 6.12 0.00 37.47 0.86
32 33 1.888512 CCACTGCATTGCCCCATATAC 59.111 52.381 6.12 0.00 0.00 1.47
33 34 2.489619 CCACTGCATTGCCCCATATACT 60.490 50.000 6.12 0.00 0.00 2.12
34 35 2.555325 CACTGCATTGCCCCATATACTG 59.445 50.000 6.12 0.00 0.00 2.74
35 36 2.442878 ACTGCATTGCCCCATATACTGA 59.557 45.455 6.12 0.00 0.00 3.41
36 37 3.074985 ACTGCATTGCCCCATATACTGAT 59.925 43.478 6.12 0.00 0.00 2.90
37 38 3.423749 TGCATTGCCCCATATACTGATG 58.576 45.455 6.12 0.00 0.00 3.07
38 39 3.181430 TGCATTGCCCCATATACTGATGT 60.181 43.478 6.12 0.00 0.00 3.06
39 40 3.192001 GCATTGCCCCATATACTGATGTG 59.808 47.826 0.00 0.00 0.00 3.21
40 41 3.507162 TTGCCCCATATACTGATGTGG 57.493 47.619 0.00 0.00 42.56 4.17
41 42 1.073763 TGCCCCATATACTGATGTGGC 59.926 52.381 3.28 3.28 46.98 5.01
42 43 1.073763 GCCCCATATACTGATGTGGCA 59.926 52.381 5.19 0.00 46.32 4.92
43 44 2.488891 GCCCCATATACTGATGTGGCAA 60.489 50.000 5.19 0.00 46.32 4.52
44 45 3.415212 CCCCATATACTGATGTGGCAAG 58.585 50.000 0.00 0.00 41.79 4.01
45 46 3.072915 CCCCATATACTGATGTGGCAAGA 59.927 47.826 0.00 0.00 41.79 3.02
46 47 4.446167 CCCCATATACTGATGTGGCAAGAA 60.446 45.833 0.00 0.00 41.79 2.52
47 48 4.516698 CCCATATACTGATGTGGCAAGAAC 59.483 45.833 0.00 0.00 41.79 3.01
48 49 5.125356 CCATATACTGATGTGGCAAGAACA 58.875 41.667 0.00 0.00 37.50 3.18
49 50 5.766670 CCATATACTGATGTGGCAAGAACAT 59.233 40.000 0.00 0.00 37.50 2.71
50 51 6.293790 CCATATACTGATGTGGCAAGAACATG 60.294 42.308 0.00 0.00 37.50 3.21
51 52 1.542915 ACTGATGTGGCAAGAACATGC 59.457 47.619 0.00 0.00 45.67 4.06
59 60 1.986698 GCAAGAACATGCATGTCACC 58.013 50.000 31.45 22.00 45.70 4.02
60 61 1.403249 GCAAGAACATGCATGTCACCC 60.403 52.381 31.45 19.74 45.70 4.61
61 62 1.135603 CAAGAACATGCATGTCACCCG 60.136 52.381 31.45 15.66 40.80 5.28
62 63 0.036732 AGAACATGCATGTCACCCGT 59.963 50.000 31.45 15.76 40.80 5.28
63 64 1.277842 AGAACATGCATGTCACCCGTA 59.722 47.619 31.45 0.00 40.80 4.02
64 65 2.080693 GAACATGCATGTCACCCGTAA 58.919 47.619 31.45 0.00 40.80 3.18
65 66 2.192664 ACATGCATGTCACCCGTAAA 57.807 45.000 26.61 0.00 35.87 2.01
66 67 2.509569 ACATGCATGTCACCCGTAAAA 58.490 42.857 26.61 0.00 35.87 1.52
67 68 3.088532 ACATGCATGTCACCCGTAAAAT 58.911 40.909 26.61 0.00 35.87 1.82
68 69 4.265893 ACATGCATGTCACCCGTAAAATA 58.734 39.130 26.61 0.00 35.87 1.40
69 70 4.702612 ACATGCATGTCACCCGTAAAATAA 59.297 37.500 26.61 0.00 35.87 1.40
70 71 5.184096 ACATGCATGTCACCCGTAAAATAAA 59.816 36.000 26.61 0.00 35.87 1.40
71 72 5.707242 TGCATGTCACCCGTAAAATAAAA 57.293 34.783 0.00 0.00 0.00 1.52
72 73 6.085555 TGCATGTCACCCGTAAAATAAAAA 57.914 33.333 0.00 0.00 0.00 1.94
92 93 3.663464 AAAGAACATGCATGTCGATCG 57.337 42.857 31.45 9.36 40.80 3.69
93 94 0.933097 AGAACATGCATGTCGATCGC 59.067 50.000 31.45 16.23 40.80 4.58
94 95 0.933097 GAACATGCATGTCGATCGCT 59.067 50.000 31.45 15.00 40.80 4.93
95 96 0.933097 AACATGCATGTCGATCGCTC 59.067 50.000 31.45 6.71 40.80 5.03
96 97 0.103755 ACATGCATGTCGATCGCTCT 59.896 50.000 26.61 0.00 35.87 4.09
97 98 1.215244 CATGCATGTCGATCGCTCTT 58.785 50.000 18.91 1.66 0.00 2.85
98 99 2.223805 ACATGCATGTCGATCGCTCTTA 60.224 45.455 26.61 0.00 35.87 2.10
99 100 2.577449 TGCATGTCGATCGCTCTTAA 57.423 45.000 11.09 0.00 0.00 1.85
100 101 2.193447 TGCATGTCGATCGCTCTTAAC 58.807 47.619 11.09 2.55 0.00 2.01
101 102 2.159240 TGCATGTCGATCGCTCTTAACT 60.159 45.455 11.09 0.00 0.00 2.24
102 103 3.066203 TGCATGTCGATCGCTCTTAACTA 59.934 43.478 11.09 0.00 0.00 2.24
103 104 3.422546 GCATGTCGATCGCTCTTAACTAC 59.577 47.826 11.09 0.15 0.00 2.73
104 105 4.790123 GCATGTCGATCGCTCTTAACTACT 60.790 45.833 11.09 0.00 0.00 2.57
105 106 4.959596 TGTCGATCGCTCTTAACTACTT 57.040 40.909 11.09 0.00 0.00 2.24
106 107 4.906423 TGTCGATCGCTCTTAACTACTTC 58.094 43.478 11.09 0.00 0.00 3.01
107 108 4.201891 TGTCGATCGCTCTTAACTACTTCC 60.202 45.833 11.09 0.00 0.00 3.46
108 109 4.035441 GTCGATCGCTCTTAACTACTTCCT 59.965 45.833 11.09 0.00 0.00 3.36
109 110 4.639310 TCGATCGCTCTTAACTACTTCCTT 59.361 41.667 11.09 0.00 0.00 3.36
110 111 4.971220 CGATCGCTCTTAACTACTTCCTTC 59.029 45.833 0.26 0.00 0.00 3.46
111 112 5.448768 CGATCGCTCTTAACTACTTCCTTCA 60.449 44.000 0.26 0.00 0.00 3.02
112 113 5.916661 TCGCTCTTAACTACTTCCTTCAT 57.083 39.130 0.00 0.00 0.00 2.57
113 114 6.282199 TCGCTCTTAACTACTTCCTTCATT 57.718 37.500 0.00 0.00 0.00 2.57
114 115 6.331061 TCGCTCTTAACTACTTCCTTCATTC 58.669 40.000 0.00 0.00 0.00 2.67
115 116 5.520649 CGCTCTTAACTACTTCCTTCATTCC 59.479 44.000 0.00 0.00 0.00 3.01
116 117 6.628398 CGCTCTTAACTACTTCCTTCATTCCT 60.628 42.308 0.00 0.00 0.00 3.36
117 118 7.416438 CGCTCTTAACTACTTCCTTCATTCCTA 60.416 40.741 0.00 0.00 0.00 2.94
118 119 8.258708 GCTCTTAACTACTTCCTTCATTCCTAA 58.741 37.037 0.00 0.00 0.00 2.69
159 160 8.794553 AGAGATTTTACTATAGACCACATACGG 58.205 37.037 6.78 0.00 0.00 4.02
160 161 8.701908 AGATTTTACTATAGACCACATACGGA 57.298 34.615 6.78 0.00 0.00 4.69
161 162 9.310449 AGATTTTACTATAGACCACATACGGAT 57.690 33.333 6.78 0.00 0.00 4.18
162 163 9.355215 GATTTTACTATAGACCACATACGGATG 57.645 37.037 5.94 5.94 39.16 3.51
164 165 8.922931 TTTACTATAGACCACATACGGATGTA 57.077 34.615 14.23 0.00 44.82 2.29
165 166 9.524496 TTTACTATAGACCACATACGGATGTAT 57.476 33.333 14.23 4.48 44.82 2.29
172 173 8.226819 AGACCACATACGGATGTATATAGATG 57.773 38.462 14.23 0.00 44.82 2.90
173 174 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
174 175 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
175 176 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
176 177 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
177 178 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
178 179 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
212 213 8.330466 TGGTTCATTCATTTTACTTCGTATGT 57.670 30.769 0.00 0.00 0.00 2.29
213 214 8.233868 TGGTTCATTCATTTTACTTCGTATGTG 58.766 33.333 0.00 0.00 0.00 3.21
214 215 7.696453 GGTTCATTCATTTTACTTCGTATGTGG 59.304 37.037 0.00 0.00 0.00 4.17
215 216 7.915293 TCATTCATTTTACTTCGTATGTGGT 57.085 32.000 0.00 0.00 0.00 4.16
216 217 7.970384 TCATTCATTTTACTTCGTATGTGGTC 58.030 34.615 0.00 0.00 0.00 4.02
217 218 6.730960 TTCATTTTACTTCGTATGTGGTCC 57.269 37.500 0.00 0.00 0.00 4.46
218 219 5.795972 TCATTTTACTTCGTATGTGGTCCA 58.204 37.500 0.00 0.00 0.00 4.02
219 220 6.231951 TCATTTTACTTCGTATGTGGTCCAA 58.768 36.000 0.00 0.00 0.00 3.53
220 221 6.882140 TCATTTTACTTCGTATGTGGTCCAAT 59.118 34.615 0.00 0.00 0.00 3.16
221 222 6.489127 TTTTACTTCGTATGTGGTCCAATG 57.511 37.500 0.00 0.00 0.00 2.82
222 223 3.695830 ACTTCGTATGTGGTCCAATGT 57.304 42.857 0.00 0.00 0.00 2.71
223 224 3.596214 ACTTCGTATGTGGTCCAATGTC 58.404 45.455 0.00 0.00 0.00 3.06
224 225 3.260884 ACTTCGTATGTGGTCCAATGTCT 59.739 43.478 0.00 0.00 0.00 3.41
225 226 3.520290 TCGTATGTGGTCCAATGTCTC 57.480 47.619 0.00 0.00 0.00 3.36
226 227 2.167693 TCGTATGTGGTCCAATGTCTCC 59.832 50.000 0.00 0.00 0.00 3.71
227 228 2.093711 CGTATGTGGTCCAATGTCTCCA 60.094 50.000 0.00 0.00 0.00 3.86
228 229 3.618752 CGTATGTGGTCCAATGTCTCCAA 60.619 47.826 0.00 0.00 0.00 3.53
229 230 3.524095 ATGTGGTCCAATGTCTCCAAA 57.476 42.857 0.00 0.00 0.00 3.28
230 231 2.862541 TGTGGTCCAATGTCTCCAAAG 58.137 47.619 0.00 0.00 0.00 2.77
231 232 2.441375 TGTGGTCCAATGTCTCCAAAGA 59.559 45.455 0.00 0.00 0.00 2.52
296 297 4.833811 TCGTGGCTCGATGATTGG 57.166 55.556 7.67 0.00 44.01 3.16
303 304 0.099436 GCTCGATGATTGGTTGTGGC 59.901 55.000 0.00 0.00 0.00 5.01
341 342 2.255406 CCCAAGATCGATCTCTGGGAT 58.745 52.381 39.41 22.42 46.62 3.85
342 343 2.233431 CCCAAGATCGATCTCTGGGATC 59.767 54.545 39.41 16.02 46.62 3.36
360 361 1.852633 TCGATGTGGGTGTCTCATCT 58.147 50.000 0.00 0.00 41.62 2.90
361 362 3.012934 TCGATGTGGGTGTCTCATCTA 57.987 47.619 0.00 0.00 41.62 1.98
368 369 2.585900 TGGGTGTCTCATCTAGGGTACT 59.414 50.000 0.00 0.00 0.00 2.73
369 370 3.789840 TGGGTGTCTCATCTAGGGTACTA 59.210 47.826 0.00 0.00 0.00 1.82
370 371 4.143543 GGGTGTCTCATCTAGGGTACTAC 58.856 52.174 0.00 0.00 0.00 2.73
371 372 4.143543 GGTGTCTCATCTAGGGTACTACC 58.856 52.174 0.00 0.00 37.60 3.18
372 373 4.141205 GGTGTCTCATCTAGGGTACTACCT 60.141 50.000 5.19 0.00 44.75 3.08
373 374 5.065235 GTGTCTCATCTAGGGTACTACCTC 58.935 50.000 5.19 0.00 42.09 3.85
374 375 4.104420 TGTCTCATCTAGGGTACTACCTCC 59.896 50.000 5.19 0.00 42.09 4.30
375 376 3.327172 TCTCATCTAGGGTACTACCTCCG 59.673 52.174 5.19 0.00 42.09 4.63
376 377 3.051581 TCATCTAGGGTACTACCTCCGT 58.948 50.000 5.19 0.00 42.09 4.69
377 378 3.072184 TCATCTAGGGTACTACCTCCGTC 59.928 52.174 5.19 0.00 42.09 4.79
378 379 2.769209 TCTAGGGTACTACCTCCGTCT 58.231 52.381 5.19 0.00 42.09 4.18
379 380 3.118531 TCTAGGGTACTACCTCCGTCTT 58.881 50.000 5.19 0.00 42.09 3.01
380 381 2.140839 AGGGTACTACCTCCGTCTTG 57.859 55.000 5.19 0.00 38.64 3.02
381 382 1.109609 GGGTACTACCTCCGTCTTGG 58.890 60.000 5.19 0.00 38.64 3.61
382 383 1.618074 GGGTACTACCTCCGTCTTGGT 60.618 57.143 5.19 0.00 38.64 3.67
383 384 1.475682 GGTACTACCTCCGTCTTGGTG 59.524 57.143 0.00 0.00 39.52 4.17
384 385 2.440409 GTACTACCTCCGTCTTGGTGA 58.560 52.381 0.00 0.00 39.52 4.02
385 386 2.005370 ACTACCTCCGTCTTGGTGAA 57.995 50.000 0.00 0.00 39.52 3.18
386 387 2.537143 ACTACCTCCGTCTTGGTGAAT 58.463 47.619 0.00 0.00 39.52 2.57
387 388 3.705051 ACTACCTCCGTCTTGGTGAATA 58.295 45.455 0.00 0.00 39.52 1.75
388 389 4.091549 ACTACCTCCGTCTTGGTGAATAA 58.908 43.478 0.00 0.00 39.52 1.40
389 390 3.611766 ACCTCCGTCTTGGTGAATAAG 57.388 47.619 0.00 0.00 39.52 1.73
390 391 2.904434 ACCTCCGTCTTGGTGAATAAGT 59.096 45.455 0.00 0.00 39.52 2.24
391 392 3.056035 ACCTCCGTCTTGGTGAATAAGTC 60.056 47.826 0.00 0.00 39.52 3.01
392 393 3.056107 CCTCCGTCTTGGTGAATAAGTCA 60.056 47.826 0.00 0.00 39.52 3.41
393 394 4.383118 CCTCCGTCTTGGTGAATAAGTCAT 60.383 45.833 0.00 0.00 38.90 3.06
394 395 5.160607 TCCGTCTTGGTGAATAAGTCATT 57.839 39.130 0.00 0.00 38.90 2.57
395 396 5.175859 TCCGTCTTGGTGAATAAGTCATTC 58.824 41.667 0.00 0.00 38.90 2.67
396 397 5.279758 TCCGTCTTGGTGAATAAGTCATTCA 60.280 40.000 0.00 0.00 42.94 2.57
411 412 9.823647 ATAAGTCATTCACATAGTTCTAGGTTG 57.176 33.333 0.00 0.00 0.00 3.77
412 413 7.482169 AGTCATTCACATAGTTCTAGGTTGA 57.518 36.000 0.00 0.00 0.00 3.18
413 414 7.324178 AGTCATTCACATAGTTCTAGGTTGAC 58.676 38.462 14.56 14.56 0.00 3.18
414 415 6.253727 GTCATTCACATAGTTCTAGGTTGACG 59.746 42.308 10.14 0.00 0.00 4.35
415 416 5.970317 TTCACATAGTTCTAGGTTGACGA 57.030 39.130 0.00 0.00 0.00 4.20
416 417 6.525578 TTCACATAGTTCTAGGTTGACGAT 57.474 37.500 0.00 0.00 0.00 3.73
417 418 6.525578 TCACATAGTTCTAGGTTGACGATT 57.474 37.500 0.00 0.00 0.00 3.34
418 419 6.931838 TCACATAGTTCTAGGTTGACGATTT 58.068 36.000 0.00 0.00 0.00 2.17
419 420 8.058667 TCACATAGTTCTAGGTTGACGATTTA 57.941 34.615 0.00 0.00 0.00 1.40
420 421 8.525316 TCACATAGTTCTAGGTTGACGATTTAA 58.475 33.333 0.00 0.00 0.00 1.52
421 422 8.592998 CACATAGTTCTAGGTTGACGATTTAAC 58.407 37.037 0.00 0.00 0.00 2.01
422 423 8.529476 ACATAGTTCTAGGTTGACGATTTAACT 58.471 33.333 0.00 0.00 0.00 2.24
426 427 8.968969 AGTTCTAGGTTGACGATTTAACTATCT 58.031 33.333 0.00 0.00 0.00 1.98
541 542 9.831737 CATATTTAAATCCTCAAATCGATGACC 57.168 33.333 3.39 0.00 0.00 4.02
542 543 9.799106 ATATTTAAATCCTCAAATCGATGACCT 57.201 29.630 3.39 0.00 0.00 3.85
544 545 8.662781 TTTAAATCCTCAAATCGATGACCTAG 57.337 34.615 0.00 0.00 0.00 3.02
545 546 6.485830 AAATCCTCAAATCGATGACCTAGA 57.514 37.500 0.00 0.00 0.00 2.43
546 547 6.485830 AATCCTCAAATCGATGACCTAGAA 57.514 37.500 0.00 0.00 0.00 2.10
547 548 5.263968 TCCTCAAATCGATGACCTAGAAC 57.736 43.478 0.00 0.00 0.00 3.01
548 549 4.099573 TCCTCAAATCGATGACCTAGAACC 59.900 45.833 0.00 0.00 0.00 3.62
549 550 4.141937 CCTCAAATCGATGACCTAGAACCA 60.142 45.833 0.00 0.00 0.00 3.67
550 551 4.755411 TCAAATCGATGACCTAGAACCAC 58.245 43.478 0.00 0.00 0.00 4.16
551 552 3.438297 AATCGATGACCTAGAACCACG 57.562 47.619 0.00 0.00 0.00 4.94
552 553 0.454600 TCGATGACCTAGAACCACGC 59.545 55.000 0.00 0.00 0.00 5.34
553 554 0.866061 CGATGACCTAGAACCACGCG 60.866 60.000 3.53 3.53 0.00 6.01
554 555 0.454600 GATGACCTAGAACCACGCGA 59.545 55.000 15.93 0.00 0.00 5.87
555 556 0.456221 ATGACCTAGAACCACGCGAG 59.544 55.000 15.93 4.16 0.00 5.03
578 579 5.531122 TGATTTATTCACCTAGACGGAGG 57.469 43.478 0.00 0.00 42.89 4.30
601 602 3.409570 AGTAGCTCACACGTCTACAAGA 58.590 45.455 12.32 0.00 36.16 3.02
602 603 4.011023 AGTAGCTCACACGTCTACAAGAT 58.989 43.478 12.32 0.00 36.16 2.40
603 604 3.223423 AGCTCACACGTCTACAAGATG 57.777 47.619 0.00 0.00 37.27 2.90
604 605 2.820197 AGCTCACACGTCTACAAGATGA 59.180 45.455 3.22 0.00 34.89 2.92
605 606 2.917971 GCTCACACGTCTACAAGATGAC 59.082 50.000 3.22 0.00 34.89 3.06
657 668 2.304092 TGGTGTATAGCGGGTGTCTAG 58.696 52.381 0.00 0.00 0.00 2.43
658 669 2.305009 GGTGTATAGCGGGTGTCTAGT 58.695 52.381 0.00 0.00 0.00 2.57
659 670 3.117926 TGGTGTATAGCGGGTGTCTAGTA 60.118 47.826 0.00 0.00 0.00 1.82
660 671 3.501445 GGTGTATAGCGGGTGTCTAGTAG 59.499 52.174 0.00 0.00 0.00 2.57
661 672 4.133078 GTGTATAGCGGGTGTCTAGTAGT 58.867 47.826 0.00 0.00 0.00 2.73
662 673 4.024218 GTGTATAGCGGGTGTCTAGTAGTG 60.024 50.000 0.00 0.00 0.00 2.74
663 674 2.795231 TAGCGGGTGTCTAGTAGTGT 57.205 50.000 0.00 0.00 0.00 3.55
664 675 1.174783 AGCGGGTGTCTAGTAGTGTG 58.825 55.000 0.00 0.00 0.00 3.82
665 676 0.886563 GCGGGTGTCTAGTAGTGTGT 59.113 55.000 0.00 0.00 0.00 3.72
698 718 2.095213 GTGTGTGTTGTGCGTATATGGG 59.905 50.000 0.00 0.00 0.00 4.00
791 815 1.459592 CGACTTCCTTGGTTAGTTGCG 59.540 52.381 0.00 0.00 0.00 4.85
829 853 4.148825 GTCGCGTCTGCCCCTCAT 62.149 66.667 5.77 0.00 38.08 2.90
841 865 1.473434 GCCCCTCATCTTCCAACGTAG 60.473 57.143 0.00 0.00 0.00 3.51
843 867 3.028850 CCCCTCATCTTCCAACGTAGTA 58.971 50.000 0.00 0.00 45.00 1.82
851 875 7.778083 TCATCTTCCAACGTAGTATACACAAT 58.222 34.615 5.50 0.00 45.00 2.71
859 883 4.404715 ACGTAGTATACACAATGCCCTCTT 59.595 41.667 5.50 0.00 43.24 2.85
905 936 2.014128 ACAACGTCCAGAAAACCACAG 58.986 47.619 0.00 0.00 0.00 3.66
922 955 2.263540 GCCCAAACGACCGAGCTA 59.736 61.111 0.00 0.00 0.00 3.32
923 956 1.810030 GCCCAAACGACCGAGCTAG 60.810 63.158 0.00 0.00 0.00 3.42
924 957 1.810030 CCCAAACGACCGAGCTAGC 60.810 63.158 6.62 6.62 0.00 3.42
925 958 1.810030 CCAAACGACCGAGCTAGCC 60.810 63.158 12.13 1.79 0.00 3.93
926 959 1.810030 CAAACGACCGAGCTAGCCC 60.810 63.158 12.13 0.00 0.00 5.19
927 960 1.982938 AAACGACCGAGCTAGCCCT 60.983 57.895 12.13 0.00 0.00 5.19
933 966 0.614979 ACCGAGCTAGCCCTTCAAGA 60.615 55.000 12.13 0.00 0.00 3.02
1146 1180 2.024871 CCGGTGATCTCGCTCGAC 59.975 66.667 0.00 0.00 0.00 4.20
1266 1300 1.141665 CCTCATCGCCGACATGACA 59.858 57.895 0.00 0.00 0.00 3.58
1382 1416 2.288666 CCTGCAGGTATACACGCATTT 58.711 47.619 25.53 0.00 33.15 2.32
1387 1421 6.443934 TGCAGGTATACACGCATTTATTTT 57.556 33.333 12.87 0.00 0.00 1.82
1388 1422 6.857956 TGCAGGTATACACGCATTTATTTTT 58.142 32.000 12.87 0.00 0.00 1.94
1483 1576 2.802247 TGAAACAGATTGCAGTCAGTCG 59.198 45.455 12.16 0.00 34.54 4.18
1493 1586 3.734463 TGCAGTCAGTCGGTTTTGAATA 58.266 40.909 0.00 0.00 0.00 1.75
1503 1596 6.016610 CAGTCGGTTTTGAATAAAGGAAGGAA 60.017 38.462 0.00 0.00 0.00 3.36
1506 1599 6.773685 TCGGTTTTGAATAAAGGAAGGAAGAA 59.226 34.615 0.00 0.00 0.00 2.52
1509 1602 7.819415 GGTTTTGAATAAAGGAAGGAAGAATGG 59.181 37.037 0.00 0.00 0.00 3.16
1514 1607 0.543749 AGGAAGGAAGAATGGCCTCG 59.456 55.000 3.32 0.00 32.07 4.63
1515 1608 0.253327 GGAAGGAAGAATGGCCTCGT 59.747 55.000 3.32 0.00 32.07 4.18
1518 1611 0.970937 AGGAAGAATGGCCTCGTCGA 60.971 55.000 3.32 0.00 0.00 4.20
1525 1618 0.457851 ATGGCCTCGTCGAAGAGAAG 59.542 55.000 27.01 13.83 40.57 2.85
1554 1647 3.117016 ACTTGCCATCATCACCCCATTAT 60.117 43.478 0.00 0.00 0.00 1.28
1565 1658 7.487338 TCATCACCCCATTATCTATCTTAGGA 58.513 38.462 0.00 0.00 0.00 2.94
1570 1663 8.605947 CACCCCATTATCTATCTTAGGATTCAA 58.394 37.037 0.00 0.00 33.71 2.69
1571 1664 9.182642 ACCCCATTATCTATCTTAGGATTCAAA 57.817 33.333 0.00 0.00 33.71 2.69
1579 1672 4.202245 TCTTAGGATTCAAAGTGGACGG 57.798 45.455 0.00 0.00 0.00 4.79
1580 1673 2.396590 TAGGATTCAAAGTGGACGGC 57.603 50.000 0.00 0.00 0.00 5.68
1581 1674 0.400213 AGGATTCAAAGTGGACGGCA 59.600 50.000 0.00 0.00 0.00 5.69
1586 1692 1.525995 CAAAGTGGACGGCAGTGGT 60.526 57.895 0.00 0.00 0.00 4.16
1631 1737 2.525381 ATCGCTGGGGCTAGAGGG 60.525 66.667 0.00 0.00 36.09 4.30
1637 1743 2.122189 GGGGCTAGAGGGATGGCT 60.122 66.667 0.00 0.00 0.00 4.75
1638 1744 1.158705 GGGGCTAGAGGGATGGCTA 59.841 63.158 0.00 0.00 0.00 3.93
1645 1751 3.171388 AGGGATGGCTAAGGGCGG 61.171 66.667 0.00 0.00 42.94 6.13
1647 1753 2.203209 GGATGGCTAAGGGCGGTG 60.203 66.667 0.00 0.00 42.94 4.94
1649 1755 3.406595 GATGGCTAAGGGCGGTGCT 62.407 63.158 0.00 0.00 42.94 4.40
1650 1756 2.040009 GATGGCTAAGGGCGGTGCTA 62.040 60.000 0.00 0.00 42.94 3.49
1651 1757 2.044806 ATGGCTAAGGGCGGTGCTAG 62.045 60.000 0.00 0.00 42.94 3.42
1652 1758 2.432300 GGCTAAGGGCGGTGCTAGA 61.432 63.158 0.00 0.00 42.94 2.43
1653 1759 1.520666 GCTAAGGGCGGTGCTAGAA 59.479 57.895 0.00 0.00 0.00 2.10
1654 1760 0.106894 GCTAAGGGCGGTGCTAGAAT 59.893 55.000 0.00 0.00 0.00 2.40
1655 1761 1.871080 CTAAGGGCGGTGCTAGAATG 58.129 55.000 0.00 0.00 0.00 2.67
1656 1762 0.468226 TAAGGGCGGTGCTAGAATGG 59.532 55.000 0.00 0.00 0.00 3.16
1657 1763 2.893682 AAGGGCGGTGCTAGAATGGC 62.894 60.000 0.00 0.00 46.05 4.40
1664 1770 2.203209 GCTAGAATGGCGGTGGGG 60.203 66.667 0.00 0.00 28.27 4.96
1665 1771 2.510906 CTAGAATGGCGGTGGGGG 59.489 66.667 0.00 0.00 0.00 5.40
1666 1772 3.774599 CTAGAATGGCGGTGGGGGC 62.775 68.421 0.00 0.00 0.00 5.80
1687 1793 2.590092 GCTAGAATGGCGGTGGGT 59.410 61.111 0.00 0.00 28.27 4.51
1691 1797 0.986019 TAGAATGGCGGTGGGTGGAT 60.986 55.000 0.00 0.00 0.00 3.41
1699 1805 1.000896 GGTGGGTGGATGTTGAGGG 60.001 63.158 0.00 0.00 0.00 4.30
1700 1806 1.497309 GGTGGGTGGATGTTGAGGGA 61.497 60.000 0.00 0.00 0.00 4.20
1751 1857 2.831770 CTGACAGGCAGTGGTGGT 59.168 61.111 0.00 0.00 39.85 4.16
1753 1859 1.762522 CTGACAGGCAGTGGTGGTCT 61.763 60.000 0.00 0.00 39.85 3.85
1784 1890 3.879885 TGGTCCGTGGGGTGGTTG 61.880 66.667 0.00 0.00 33.83 3.77
1788 1894 4.966787 CCGTGGGGTGGTTGGGTG 62.967 72.222 0.00 0.00 0.00 4.61
1796 1903 1.053424 GGTGGTTGGGTGAGACAGTA 58.947 55.000 0.00 0.00 0.00 2.74
1830 1937 3.840437 AAGCTGCGCAAGGTTGAA 58.160 50.000 13.05 0.00 44.89 2.69
1831 1938 2.114638 AAGCTGCGCAAGGTTGAAA 58.885 47.368 13.05 0.00 44.89 2.69
1832 1939 0.459489 AAGCTGCGCAAGGTTGAAAA 59.541 45.000 13.05 0.00 44.89 2.29
1862 1969 5.066505 GCTGGACGTTAGATTTTGATCCAAT 59.933 40.000 5.10 0.00 34.46 3.16
2043 2162 3.751246 CGTACCCGGTGAAGGCGA 61.751 66.667 0.00 0.00 0.00 5.54
2120 2239 2.755876 AGCGAGCGACTCATGGGA 60.756 61.111 0.00 0.00 0.00 4.37
2234 2353 2.098831 GGTCAACTTCTACCCGCGC 61.099 63.158 0.00 0.00 0.00 6.86
2303 2422 1.910722 CACCATCACCCTCCTCCTG 59.089 63.158 0.00 0.00 0.00 3.86
2357 2476 2.044946 GGCGGCAAGACCTGGATT 60.045 61.111 3.07 0.00 35.61 3.01
2452 2571 1.096967 TTCCGTGCCATGCATGCTAG 61.097 55.000 21.69 11.02 43.41 3.42
2668 2812 2.119495 GAGGAGCCCATACTGGAAGAA 58.881 52.381 0.00 0.00 40.96 2.52
2849 2997 3.498397 TCTCAACGAAATTCTTGCCTGAC 59.502 43.478 0.00 0.00 0.00 3.51
3011 3164 4.039488 TGGAACTGAACCGAGCTAAGTAAA 59.961 41.667 0.00 0.00 0.00 2.01
3012 3165 5.176592 GGAACTGAACCGAGCTAAGTAAAT 58.823 41.667 0.00 0.00 0.00 1.40
3013 3166 6.071221 TGGAACTGAACCGAGCTAAGTAAATA 60.071 38.462 0.00 0.00 0.00 1.40
3014 3167 6.815142 GGAACTGAACCGAGCTAAGTAAATAA 59.185 38.462 0.00 0.00 0.00 1.40
3019 3172 6.154021 TGAACCGAGCTAAGTAAATAAGGAGT 59.846 38.462 0.00 0.00 0.00 3.85
3024 3177 8.358148 CCGAGCTAAGTAAATAAGGAGTTATCA 58.642 37.037 0.00 0.00 0.00 2.15
3055 3208 3.361724 GCGTGTGCAGAAATATAGCGTAC 60.362 47.826 0.00 0.00 42.15 3.67
3056 3209 4.042398 CGTGTGCAGAAATATAGCGTACT 58.958 43.478 0.00 0.00 0.00 2.73
3057 3210 4.146616 CGTGTGCAGAAATATAGCGTACTC 59.853 45.833 0.00 0.00 0.00 2.59
3070 3223 1.587034 GCGTACTCATTTCGTACTGGC 59.413 52.381 0.00 0.00 36.08 4.85
3076 3229 2.932614 CTCATTTCGTACTGGCTTCTGG 59.067 50.000 0.00 0.00 0.00 3.86
3108 3261 1.610624 CGTGTGGTTGGGCTACATTCT 60.611 52.381 0.00 0.00 40.67 2.40
3113 3266 3.826729 GTGGTTGGGCTACATTCTTTTCT 59.173 43.478 0.00 0.00 0.00 2.52
3116 3269 4.321974 GGTTGGGCTACATTCTTTTCTTGG 60.322 45.833 0.00 0.00 0.00 3.61
3130 3283 2.363306 TCTTGGGCACATGAGTTGTT 57.637 45.000 0.00 0.00 36.00 2.83
3131 3284 1.955778 TCTTGGGCACATGAGTTGTTG 59.044 47.619 0.00 0.00 36.00 3.33
3132 3285 1.955778 CTTGGGCACATGAGTTGTTGA 59.044 47.619 0.00 0.00 36.00 3.18
3133 3286 2.291209 TGGGCACATGAGTTGTTGAT 57.709 45.000 0.00 0.00 36.00 2.57
3134 3287 2.596346 TGGGCACATGAGTTGTTGATT 58.404 42.857 0.00 0.00 36.00 2.57
3135 3288 2.964464 TGGGCACATGAGTTGTTGATTT 59.036 40.909 0.00 0.00 36.00 2.17
3136 3289 4.148079 TGGGCACATGAGTTGTTGATTTA 58.852 39.130 0.00 0.00 36.00 1.40
3137 3290 4.771577 TGGGCACATGAGTTGTTGATTTAT 59.228 37.500 0.00 0.00 36.00 1.40
3138 3291 5.948758 TGGGCACATGAGTTGTTGATTTATA 59.051 36.000 0.00 0.00 36.00 0.98
3139 3292 6.606796 TGGGCACATGAGTTGTTGATTTATAT 59.393 34.615 0.00 0.00 36.00 0.86
3140 3293 7.123997 TGGGCACATGAGTTGTTGATTTATATT 59.876 33.333 0.00 0.00 36.00 1.28
3141 3294 7.981225 GGGCACATGAGTTGTTGATTTATATTT 59.019 33.333 0.00 0.00 36.00 1.40
3142 3295 9.369904 GGCACATGAGTTGTTGATTTATATTTT 57.630 29.630 0.00 0.00 36.00 1.82
3162 3315 6.790285 TTTTTCTTAAGATAACGAACCGCT 57.210 33.333 5.89 0.00 0.00 5.52
3163 3316 7.887996 TTTTTCTTAAGATAACGAACCGCTA 57.112 32.000 5.89 0.00 0.00 4.26
3164 3317 7.887996 TTTTCTTAAGATAACGAACCGCTAA 57.112 32.000 5.89 0.00 0.00 3.09
3165 3318 7.515957 TTTCTTAAGATAACGAACCGCTAAG 57.484 36.000 5.89 0.00 0.00 2.18
3166 3319 5.039333 TCTTAAGATAACGAACCGCTAAGC 58.961 41.667 0.00 0.00 0.00 3.09
3167 3320 3.521947 AAGATAACGAACCGCTAAGCT 57.478 42.857 0.00 0.00 0.00 3.74
3168 3321 2.810650 AGATAACGAACCGCTAAGCTG 58.189 47.619 0.00 0.00 0.00 4.24
3169 3322 2.165845 AGATAACGAACCGCTAAGCTGT 59.834 45.455 0.00 0.00 0.00 4.40
3170 3323 1.705256 TAACGAACCGCTAAGCTGTG 58.295 50.000 0.00 0.00 0.00 3.66
3171 3324 0.249741 AACGAACCGCTAAGCTGTGT 60.250 50.000 0.00 0.00 0.00 3.72
3172 3325 0.944311 ACGAACCGCTAAGCTGTGTG 60.944 55.000 0.00 0.00 0.00 3.82
3173 3326 1.497722 GAACCGCTAAGCTGTGTGC 59.502 57.895 0.00 0.00 43.29 4.57
3174 3327 1.227823 AACCGCTAAGCTGTGTGCA 60.228 52.632 0.00 0.00 45.94 4.57
3175 3328 1.507141 AACCGCTAAGCTGTGTGCAC 61.507 55.000 10.75 10.75 45.94 4.57
3176 3329 1.960763 CCGCTAAGCTGTGTGCACA 60.961 57.895 17.42 17.42 45.94 4.57
3177 3330 1.300971 CCGCTAAGCTGTGTGCACAT 61.301 55.000 24.69 9.15 45.94 3.21
3178 3331 0.179207 CGCTAAGCTGTGTGCACATG 60.179 55.000 24.69 19.27 45.94 3.21
3179 3332 1.159285 GCTAAGCTGTGTGCACATGA 58.841 50.000 24.69 12.01 45.94 3.07
3180 3333 1.129998 GCTAAGCTGTGTGCACATGAG 59.870 52.381 24.69 21.57 45.94 2.90
3181 3334 2.420642 CTAAGCTGTGTGCACATGAGT 58.579 47.619 24.69 10.26 45.94 3.41
3182 3335 1.683943 AAGCTGTGTGCACATGAGTT 58.316 45.000 24.69 16.58 45.94 3.01
3183 3336 0.949397 AGCTGTGTGCACATGAGTTG 59.051 50.000 24.69 10.52 45.94 3.16
3184 3337 0.664761 GCTGTGTGCACATGAGTTGT 59.335 50.000 24.69 0.00 41.01 3.32
3185 3338 1.334419 GCTGTGTGCACATGAGTTGTC 60.334 52.381 24.69 7.88 41.01 3.18
3186 3339 1.265095 CTGTGTGCACATGAGTTGTCC 59.735 52.381 24.69 7.10 41.01 4.02
3187 3340 1.308047 GTGTGCACATGAGTTGTCCA 58.692 50.000 24.69 0.00 36.00 4.02
3188 3341 1.002468 GTGTGCACATGAGTTGTCCAC 60.002 52.381 24.69 0.91 45.62 4.02
3189 3342 0.235665 GTGCACATGAGTTGTCCACG 59.764 55.000 13.17 0.00 37.27 4.94
3190 3343 0.179059 TGCACATGAGTTGTCCACGT 60.179 50.000 0.00 0.00 36.00 4.49
3191 3344 1.069358 TGCACATGAGTTGTCCACGTA 59.931 47.619 0.00 0.00 36.00 3.57
3192 3345 1.459592 GCACATGAGTTGTCCACGTAC 59.540 52.381 0.00 0.00 36.00 3.67
3193 3346 2.749776 CACATGAGTTGTCCACGTACA 58.250 47.619 0.00 0.00 36.00 2.90
3194 3347 3.325870 CACATGAGTTGTCCACGTACAT 58.674 45.455 0.00 0.00 36.00 2.29
3195 3348 3.745975 CACATGAGTTGTCCACGTACATT 59.254 43.478 0.00 0.00 36.00 2.71
3196 3349 4.213270 CACATGAGTTGTCCACGTACATTT 59.787 41.667 0.00 0.00 36.00 2.32
3197 3350 4.213270 ACATGAGTTGTCCACGTACATTTG 59.787 41.667 0.00 0.00 30.89 2.32
3198 3351 3.135225 TGAGTTGTCCACGTACATTTGG 58.865 45.455 0.00 0.00 0.00 3.28
3199 3352 3.181464 TGAGTTGTCCACGTACATTTGGA 60.181 43.478 4.15 4.15 39.72 3.53
3200 3353 3.810941 GAGTTGTCCACGTACATTTGGAA 59.189 43.478 8.97 0.00 43.67 3.53
3201 3354 3.562557 AGTTGTCCACGTACATTTGGAAC 59.437 43.478 8.97 5.89 43.67 3.62
3202 3355 2.136728 TGTCCACGTACATTTGGAACG 58.863 47.619 8.97 6.27 43.67 3.95
3203 3356 1.461897 GTCCACGTACATTTGGAACGG 59.538 52.381 8.97 0.00 43.67 4.44
3204 3357 0.167251 CCACGTACATTTGGAACGGC 59.833 55.000 10.92 0.00 40.81 5.68
3205 3358 0.167251 CACGTACATTTGGAACGGCC 59.833 55.000 0.00 0.00 40.81 6.13
3213 3366 2.112297 TGGAACGGCCAACACCTC 59.888 61.111 2.24 0.00 45.87 3.85
3214 3367 2.430367 GGAACGGCCAACACCTCT 59.570 61.111 2.24 0.00 36.34 3.69
3215 3368 1.228154 GGAACGGCCAACACCTCTT 60.228 57.895 2.24 0.00 36.34 2.85
3216 3369 0.822121 GGAACGGCCAACACCTCTTT 60.822 55.000 2.24 0.00 36.34 2.52
3217 3370 1.029681 GAACGGCCAACACCTCTTTT 58.970 50.000 2.24 0.00 0.00 2.27
3218 3371 1.407618 GAACGGCCAACACCTCTTTTT 59.592 47.619 2.24 0.00 0.00 1.94
3250 3403 2.837532 TTTTTGAAGCTCAATGCCCC 57.162 45.000 0.00 0.00 44.23 5.80
3252 3405 2.897271 TTTGAAGCTCAATGCCCCTA 57.103 45.000 0.00 0.00 44.23 3.53
3292 3445 1.334556 GCAAGCATGTGTGACTGAACA 59.665 47.619 0.00 0.00 0.00 3.18
3294 3447 3.365832 CAAGCATGTGTGACTGAACAAC 58.634 45.455 0.00 0.00 0.00 3.32
3297 3450 2.031682 GCATGTGTGACTGAACAACCTC 60.032 50.000 0.00 0.00 0.00 3.85
3298 3451 3.205338 CATGTGTGACTGAACAACCTCA 58.795 45.455 0.00 0.00 0.00 3.86
3299 3452 2.905075 TGTGTGACTGAACAACCTCAG 58.095 47.619 0.00 0.00 46.94 3.35
3300 3453 1.599542 GTGTGACTGAACAACCTCAGC 59.400 52.381 0.56 0.00 45.72 4.26
3339 3492 7.596248 CAGGGATTACATCAAAAGTTTCAACAG 59.404 37.037 0.00 0.00 0.00 3.16
3342 3495 9.185192 GGATTACATCAAAAGTTTCAACAGAAG 57.815 33.333 0.00 0.00 0.00 2.85
3344 3497 8.909708 TTACATCAAAAGTTTCAACAGAAGTG 57.090 30.769 0.00 0.00 0.00 3.16
3345 3498 6.332630 ACATCAAAAGTTTCAACAGAAGTGG 58.667 36.000 0.00 0.00 0.00 4.00
3359 3534 1.990160 AAGTGGGAAACGGTGAGCCA 61.990 55.000 0.00 0.00 34.09 4.75
3362 3537 1.122632 TGGGAAACGGTGAGCCACTA 61.123 55.000 5.48 0.00 34.40 2.74
3363 3538 0.672711 GGGAAACGGTGAGCCACTAC 60.673 60.000 5.48 0.00 34.40 2.73
3372 3547 3.703420 GGTGAGCCACTACATTAGTACG 58.297 50.000 5.48 0.00 37.23 3.67
3373 3548 3.129988 GGTGAGCCACTACATTAGTACGT 59.870 47.826 0.00 0.00 37.23 3.57
3374 3549 4.336433 GGTGAGCCACTACATTAGTACGTA 59.664 45.833 0.00 0.00 37.23 3.57
3375 3550 5.505324 GGTGAGCCACTACATTAGTACGTAG 60.505 48.000 0.00 4.64 40.77 3.51
3376 3551 5.295292 GTGAGCCACTACATTAGTACGTAGA 59.705 44.000 11.26 0.00 38.76 2.59
3377 3552 5.882000 TGAGCCACTACATTAGTACGTAGAA 59.118 40.000 11.26 0.00 38.76 2.10
3392 3567 2.591584 CGTAGAACGACTAGAAAACCGC 59.408 50.000 0.00 0.00 46.05 5.68
3412 3587 0.700564 AGCTTGAATCCCTGGAGCAA 59.299 50.000 0.00 0.00 35.86 3.91
3430 3605 7.345691 TGGAGCAAATTACTCATATCCTTCAA 58.654 34.615 9.82 0.00 35.79 2.69
3469 3644 6.817765 TGTGATAACCAATGGACTTTTCTC 57.182 37.500 6.16 0.00 0.00 2.87
3482 3657 4.568592 GGACTTTTCTCTGGTGATTCCCAT 60.569 45.833 0.00 0.00 33.00 4.00
3486 3661 2.050144 TCTCTGGTGATTCCCATAGGC 58.950 52.381 6.69 0.00 33.00 3.93
3494 3669 2.637382 TGATTCCCATAGGCGCTGAATA 59.363 45.455 7.64 0.00 0.00 1.75
3496 3671 3.334583 TTCCCATAGGCGCTGAATATC 57.665 47.619 7.64 0.00 0.00 1.63
3506 3681 2.217393 GCGCTGAATATCTTGACAGTCG 59.783 50.000 0.00 0.00 35.18 4.18
3536 3711 2.863809 ACCACTTGTTGAAGTCCCATC 58.136 47.619 0.00 0.00 40.68 3.51
3551 3726 3.278870 TCCCATCTCTAGGGGCTATACT 58.721 50.000 0.00 0.00 46.95 2.12
3561 3736 3.714144 AGGGGCTATACTTATCGCATCT 58.286 45.455 0.00 0.00 0.00 2.90
3563 3738 3.447586 GGGGCTATACTTATCGCATCTCA 59.552 47.826 0.00 0.00 0.00 3.27
3564 3739 4.081642 GGGGCTATACTTATCGCATCTCAA 60.082 45.833 0.00 0.00 0.00 3.02
3567 3743 6.033341 GGCTATACTTATCGCATCTCAAGAG 58.967 44.000 0.00 0.00 0.00 2.85
3575 3751 1.666054 GCATCTCAAGAGGCCAAGAG 58.334 55.000 5.01 6.47 45.12 2.85
3579 3755 0.903942 CTCAAGAGGCCAAGAGCTCT 59.096 55.000 11.45 11.45 43.05 4.09
3588 3764 1.484240 GCCAAGAGCTCTATGGACAGT 59.516 52.381 32.05 10.84 38.99 3.55
3589 3765 2.695666 GCCAAGAGCTCTATGGACAGTA 59.304 50.000 32.05 0.00 38.99 2.74
3591 3767 3.320541 CCAAGAGCTCTATGGACAGTAGG 59.679 52.174 27.54 11.45 36.27 3.18
3606 3782 2.683867 CAGTAGGTCAGTAACTCCCTCG 59.316 54.545 0.00 0.00 0.00 4.63
3609 3785 3.666345 AGGTCAGTAACTCCCTCGTAT 57.334 47.619 0.00 0.00 0.00 3.06
3618 3794 2.173519 ACTCCCTCGTATCGGAAACAA 58.826 47.619 0.00 0.00 0.00 2.83
3629 3805 0.795085 CGGAAACAAGCTGCTCTCAG 59.205 55.000 1.00 0.00 43.16 3.35
3651 3827 0.611896 AAGCCCCTTGGTCATTTCGG 60.612 55.000 0.00 0.00 0.00 4.30
3652 3828 1.001393 GCCCCTTGGTCATTTCGGA 60.001 57.895 0.00 0.00 0.00 4.55
3682 3858 0.909610 TGCCCCTCCTGTACTCCTTG 60.910 60.000 0.00 0.00 0.00 3.61
3683 3859 0.617820 GCCCCTCCTGTACTCCTTGA 60.618 60.000 0.00 0.00 0.00 3.02
3696 3875 0.322456 TCCTTGAATCAGTTGCCCCG 60.322 55.000 0.00 0.00 0.00 5.73
3701 3880 1.648467 GAATCAGTTGCCCCGTCTGC 61.648 60.000 0.00 0.00 0.00 4.26
3705 3884 1.675641 AGTTGCCCCGTCTGCATTC 60.676 57.895 0.00 0.00 38.76 2.67
3707 3886 1.228398 TTGCCCCGTCTGCATTCAA 60.228 52.632 0.00 0.00 38.76 2.69
3717 3896 3.376234 CGTCTGCATTCAACTTGATCCAT 59.624 43.478 0.00 0.00 0.00 3.41
3721 3900 2.033801 GCATTCAACTTGATCCATCCGG 59.966 50.000 0.00 0.00 0.00 5.14
3729 3908 2.851102 ATCCATCCGGCCTCTGGG 60.851 66.667 13.35 1.90 0.00 4.45
3748 3927 1.229975 GGCCTGCCATTTTTGCACAC 61.230 55.000 2.58 0.00 34.46 3.82
3749 3928 1.229975 GCCTGCCATTTTTGCACACC 61.230 55.000 0.00 0.00 34.46 4.16
3750 3929 0.106335 CCTGCCATTTTTGCACACCA 59.894 50.000 0.00 0.00 34.46 4.17
3752 3931 2.496111 CTGCCATTTTTGCACACCATT 58.504 42.857 0.00 0.00 34.46 3.16
3753 3932 2.219458 TGCCATTTTTGCACACCATTG 58.781 42.857 0.00 0.00 32.85 2.82
3756 3935 3.548415 GCCATTTTTGCACACCATTGTTG 60.548 43.478 0.00 0.00 31.66 3.33
3764 3943 3.115554 GCACACCATTGTTGTGAACTTC 58.884 45.455 17.41 0.00 37.18 3.01
3766 3945 3.130164 CACACCATTGTTGTGAACTTCCA 59.870 43.478 8.52 0.00 37.18 3.53
3769 3948 3.130340 ACCATTGTTGTGAACTTCCACAC 59.870 43.478 0.00 0.00 45.62 3.82
3774 3953 1.388547 TGTGAACTTCCACACTTGGC 58.611 50.000 0.00 0.00 43.56 4.52
3813 3992 6.927936 CACGAACAATCTCCTCTATGATGATT 59.072 38.462 0.00 0.00 0.00 2.57
3822 4001 8.718158 TCTCCTCTATGATGATTATTGACTGT 57.282 34.615 0.00 0.00 0.00 3.55
3825 4004 9.593565 TCCTCTATGATGATTATTGACTGTAGT 57.406 33.333 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.424566 GGCAATGCAGTGGCGGTG 62.425 66.667 25.00 0.00 45.35 4.94
11 12 1.117142 ATATGGGGCAATGCAGTGGC 61.117 55.000 30.05 30.05 43.12 5.01
12 13 1.888512 GTATATGGGGCAATGCAGTGG 59.111 52.381 16.93 0.00 0.00 4.00
13 14 2.555325 CAGTATATGGGGCAATGCAGTG 59.445 50.000 10.38 10.38 0.00 3.66
14 15 2.442878 TCAGTATATGGGGCAATGCAGT 59.557 45.455 7.79 0.00 0.00 4.40
15 16 3.144657 TCAGTATATGGGGCAATGCAG 57.855 47.619 7.79 0.00 0.00 4.41
16 17 3.181430 ACATCAGTATATGGGGCAATGCA 60.181 43.478 7.79 0.00 0.00 3.96
17 18 3.192001 CACATCAGTATATGGGGCAATGC 59.808 47.826 0.00 0.00 0.00 3.56
18 19 3.760151 CCACATCAGTATATGGGGCAATG 59.240 47.826 0.00 0.00 43.32 2.82
19 20 4.038271 CCACATCAGTATATGGGGCAAT 57.962 45.455 0.00 0.00 43.32 3.56
20 21 3.507162 CCACATCAGTATATGGGGCAA 57.493 47.619 0.00 0.00 43.32 4.52
24 25 4.356405 TCTTGCCACATCAGTATATGGG 57.644 45.455 0.00 0.00 32.49 4.00
25 26 5.125356 TGTTCTTGCCACATCAGTATATGG 58.875 41.667 0.00 0.00 35.17 2.74
26 27 6.665465 CATGTTCTTGCCACATCAGTATATG 58.335 40.000 0.00 0.00 32.25 1.78
27 28 5.240183 GCATGTTCTTGCCACATCAGTATAT 59.760 40.000 0.00 0.00 36.60 0.86
28 29 4.576053 GCATGTTCTTGCCACATCAGTATA 59.424 41.667 0.00 0.00 36.60 1.47
29 30 3.379372 GCATGTTCTTGCCACATCAGTAT 59.621 43.478 0.00 0.00 36.60 2.12
30 31 2.749076 GCATGTTCTTGCCACATCAGTA 59.251 45.455 0.00 0.00 36.60 2.74
31 32 1.542915 GCATGTTCTTGCCACATCAGT 59.457 47.619 0.00 0.00 36.60 3.41
32 33 1.542472 TGCATGTTCTTGCCACATCAG 59.458 47.619 7.92 0.00 42.06 2.90
33 34 1.618487 TGCATGTTCTTGCCACATCA 58.382 45.000 7.92 0.00 42.06 3.07
34 35 2.094390 ACATGCATGTTCTTGCCACATC 60.094 45.455 26.61 0.00 42.06 3.06
35 36 1.897133 ACATGCATGTTCTTGCCACAT 59.103 42.857 26.61 0.00 42.06 3.21
36 37 1.270274 GACATGCATGTTCTTGCCACA 59.730 47.619 31.82 0.00 41.95 4.17
37 38 1.270274 TGACATGCATGTTCTTGCCAC 59.730 47.619 31.82 17.26 41.95 5.01
38 39 1.270274 GTGACATGCATGTTCTTGCCA 59.730 47.619 31.82 20.92 41.95 4.92
39 40 1.403249 GGTGACATGCATGTTCTTGCC 60.403 52.381 31.82 22.98 41.95 4.52
40 41 1.403249 GGGTGACATGCATGTTCTTGC 60.403 52.381 31.82 19.33 41.95 4.01
41 42 1.135603 CGGGTGACATGCATGTTCTTG 60.136 52.381 31.82 17.35 41.95 3.02
42 43 1.167851 CGGGTGACATGCATGTTCTT 58.832 50.000 31.82 10.66 41.95 2.52
43 44 0.036732 ACGGGTGACATGCATGTTCT 59.963 50.000 31.82 11.06 41.95 3.01
44 45 1.732941 TACGGGTGACATGCATGTTC 58.267 50.000 31.82 25.15 41.95 3.18
45 46 2.192664 TTACGGGTGACATGCATGTT 57.807 45.000 31.82 17.95 41.95 2.71
46 47 2.192664 TTTACGGGTGACATGCATGT 57.807 45.000 31.82 31.82 45.16 3.21
47 48 3.781079 ATTTTACGGGTGACATGCATG 57.219 42.857 25.09 25.09 0.00 4.06
48 49 5.906113 TTTATTTTACGGGTGACATGCAT 57.094 34.783 0.00 0.00 0.00 3.96
49 50 5.707242 TTTTATTTTACGGGTGACATGCA 57.293 34.783 0.00 0.00 0.00 3.96
70 71 4.406069 CGATCGACATGCATGTTCTTTTT 58.594 39.130 31.82 14.53 41.95 1.94
71 72 3.728864 GCGATCGACATGCATGTTCTTTT 60.729 43.478 31.82 15.85 41.95 2.27
72 73 2.223112 GCGATCGACATGCATGTTCTTT 60.223 45.455 31.82 17.51 41.95 2.52
73 74 1.328680 GCGATCGACATGCATGTTCTT 59.671 47.619 31.82 19.21 41.95 2.52
74 75 0.933097 GCGATCGACATGCATGTTCT 59.067 50.000 31.82 19.40 41.95 3.01
75 76 0.933097 AGCGATCGACATGCATGTTC 59.067 50.000 31.82 23.49 41.95 3.18
76 77 0.933097 GAGCGATCGACATGCATGTT 59.067 50.000 31.82 17.67 41.95 2.71
77 78 0.103755 AGAGCGATCGACATGCATGT 59.896 50.000 31.82 31.82 45.16 3.21
78 79 1.215244 AAGAGCGATCGACATGCATG 58.785 50.000 25.09 25.09 0.00 4.06
79 80 2.797156 GTTAAGAGCGATCGACATGCAT 59.203 45.455 21.57 0.00 0.00 3.96
80 81 2.159240 AGTTAAGAGCGATCGACATGCA 60.159 45.455 21.57 0.00 0.00 3.96
81 82 2.464865 AGTTAAGAGCGATCGACATGC 58.535 47.619 21.57 0.00 0.00 4.06
82 83 4.849883 AGTAGTTAAGAGCGATCGACATG 58.150 43.478 21.57 0.00 0.00 3.21
83 84 5.502153 AAGTAGTTAAGAGCGATCGACAT 57.498 39.130 21.57 7.47 0.00 3.06
84 85 4.201891 GGAAGTAGTTAAGAGCGATCGACA 60.202 45.833 21.57 0.00 0.00 4.35
85 86 4.035441 AGGAAGTAGTTAAGAGCGATCGAC 59.965 45.833 21.57 11.92 0.00 4.20
86 87 4.197750 AGGAAGTAGTTAAGAGCGATCGA 58.802 43.478 21.57 0.00 0.00 3.59
87 88 4.555348 AGGAAGTAGTTAAGAGCGATCG 57.445 45.455 11.69 11.69 0.00 3.69
88 89 5.892568 TGAAGGAAGTAGTTAAGAGCGATC 58.107 41.667 0.00 0.00 0.00 3.69
89 90 5.916661 TGAAGGAAGTAGTTAAGAGCGAT 57.083 39.130 0.00 0.00 0.00 4.58
90 91 5.916661 ATGAAGGAAGTAGTTAAGAGCGA 57.083 39.130 0.00 0.00 0.00 4.93
91 92 5.520649 GGAATGAAGGAAGTAGTTAAGAGCG 59.479 44.000 0.00 0.00 0.00 5.03
92 93 6.645306 AGGAATGAAGGAAGTAGTTAAGAGC 58.355 40.000 0.00 0.00 0.00 4.09
133 134 8.794553 CCGTATGTGGTCTATAGTAAAATCTCT 58.205 37.037 0.00 0.00 0.00 3.10
134 135 8.790718 TCCGTATGTGGTCTATAGTAAAATCTC 58.209 37.037 0.00 0.00 0.00 2.75
135 136 8.701908 TCCGTATGTGGTCTATAGTAAAATCT 57.298 34.615 0.00 0.00 0.00 2.40
136 137 9.355215 CATCCGTATGTGGTCTATAGTAAAATC 57.645 37.037 0.00 0.00 0.00 2.17
137 138 8.867097 ACATCCGTATGTGGTCTATAGTAAAAT 58.133 33.333 0.00 0.00 44.79 1.82
138 139 8.241497 ACATCCGTATGTGGTCTATAGTAAAA 57.759 34.615 0.00 0.00 44.79 1.52
139 140 7.828508 ACATCCGTATGTGGTCTATAGTAAA 57.171 36.000 0.00 0.00 44.79 2.01
146 147 9.338622 CATCTATATACATCCGTATGTGGTCTA 57.661 37.037 3.56 0.00 45.99 2.59
147 148 7.201830 GCATCTATATACATCCGTATGTGGTCT 60.202 40.741 3.56 0.00 45.99 3.85
148 149 6.918569 GCATCTATATACATCCGTATGTGGTC 59.081 42.308 3.56 0.00 45.99 4.02
149 150 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
150 151 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
151 152 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
203 204 3.861840 AGACATTGGACCACATACGAAG 58.138 45.455 0.00 0.00 0.00 3.79
204 205 3.369052 GGAGACATTGGACCACATACGAA 60.369 47.826 0.00 0.00 0.00 3.85
205 206 2.167693 GGAGACATTGGACCACATACGA 59.832 50.000 0.00 0.00 0.00 3.43
206 207 2.093711 TGGAGACATTGGACCACATACG 60.094 50.000 0.00 0.00 33.40 3.06
207 208 3.627395 TGGAGACATTGGACCACATAC 57.373 47.619 0.00 0.00 33.40 2.39
208 209 4.288366 TCTTTGGAGACATTGGACCACATA 59.712 41.667 0.00 0.00 42.32 2.29
209 210 3.074390 TCTTTGGAGACATTGGACCACAT 59.926 43.478 0.00 0.00 42.32 3.21
210 211 2.441375 TCTTTGGAGACATTGGACCACA 59.559 45.455 0.00 0.00 42.32 4.17
211 212 3.140325 TCTTTGGAGACATTGGACCAC 57.860 47.619 0.00 0.00 42.32 4.16
243 244 8.989980 CGAAAATTAACTACTTCCTCTGTTTCT 58.010 33.333 0.00 0.00 0.00 2.52
244 245 8.985805 TCGAAAATTAACTACTTCCTCTGTTTC 58.014 33.333 0.00 0.00 0.00 2.78
245 246 8.897872 TCGAAAATTAACTACTTCCTCTGTTT 57.102 30.769 0.00 0.00 0.00 2.83
246 247 8.897872 TTCGAAAATTAACTACTTCCTCTGTT 57.102 30.769 0.00 0.00 0.00 3.16
247 248 8.365647 TCTTCGAAAATTAACTACTTCCTCTGT 58.634 33.333 0.00 0.00 0.00 3.41
248 249 8.758633 TCTTCGAAAATTAACTACTTCCTCTG 57.241 34.615 0.00 0.00 0.00 3.35
249 250 9.372369 CATCTTCGAAAATTAACTACTTCCTCT 57.628 33.333 0.00 0.00 0.00 3.69
250 251 9.367444 TCATCTTCGAAAATTAACTACTTCCTC 57.633 33.333 0.00 0.00 0.00 3.71
251 252 9.372369 CTCATCTTCGAAAATTAACTACTTCCT 57.628 33.333 0.00 0.00 0.00 3.36
252 253 8.117370 GCTCATCTTCGAAAATTAACTACTTCC 58.883 37.037 0.00 0.00 0.00 3.46
253 254 8.874816 AGCTCATCTTCGAAAATTAACTACTTC 58.125 33.333 0.00 0.00 0.00 3.01
254 255 8.779354 AGCTCATCTTCGAAAATTAACTACTT 57.221 30.769 0.00 0.00 0.00 2.24
255 256 7.221067 CGAGCTCATCTTCGAAAATTAACTACT 59.779 37.037 15.40 0.00 0.00 2.57
256 257 7.009357 ACGAGCTCATCTTCGAAAATTAACTAC 59.991 37.037 15.40 0.00 0.00 2.73
257 258 7.009265 CACGAGCTCATCTTCGAAAATTAACTA 59.991 37.037 15.40 0.00 0.00 2.24
258 259 5.869888 ACGAGCTCATCTTCGAAAATTAACT 59.130 36.000 15.40 0.00 0.00 2.24
259 260 5.954349 CACGAGCTCATCTTCGAAAATTAAC 59.046 40.000 15.40 0.00 0.00 2.01
260 261 5.063438 CCACGAGCTCATCTTCGAAAATTAA 59.937 40.000 15.40 0.00 0.00 1.40
261 262 4.566759 CCACGAGCTCATCTTCGAAAATTA 59.433 41.667 15.40 0.00 0.00 1.40
341 342 1.852633 AGATGAGACACCCACATCGA 58.147 50.000 0.00 0.00 43.22 3.59
342 343 2.035193 CCTAGATGAGACACCCACATCG 59.965 54.545 0.00 0.00 43.22 3.84
343 344 2.366916 CCCTAGATGAGACACCCACATC 59.633 54.545 0.00 0.00 40.14 3.06
344 345 2.293184 ACCCTAGATGAGACACCCACAT 60.293 50.000 0.00 0.00 0.00 3.21
345 346 1.078823 ACCCTAGATGAGACACCCACA 59.921 52.381 0.00 0.00 0.00 4.17
360 361 2.092212 CCAAGACGGAGGTAGTACCCTA 60.092 54.545 16.05 0.00 39.75 3.53
361 362 1.341778 CCAAGACGGAGGTAGTACCCT 60.342 57.143 16.05 2.47 39.75 4.34
368 369 4.091549 ACTTATTCACCAAGACGGAGGTA 58.908 43.478 0.00 0.00 36.07 3.08
369 370 2.904434 ACTTATTCACCAAGACGGAGGT 59.096 45.455 0.00 0.00 39.10 3.85
370 371 3.056107 TGACTTATTCACCAAGACGGAGG 60.056 47.826 0.00 0.00 38.63 4.30
371 372 4.188247 TGACTTATTCACCAAGACGGAG 57.812 45.455 0.00 0.00 38.63 4.63
372 373 4.819105 ATGACTTATTCACCAAGACGGA 57.181 40.909 0.00 0.00 36.92 4.69
373 374 5.470845 GAATGACTTATTCACCAAGACGG 57.529 43.478 0.00 0.00 43.79 4.79
385 386 9.823647 CAACCTAGAACTATGTGAATGACTTAT 57.176 33.333 0.00 0.00 0.00 1.73
386 387 9.031537 TCAACCTAGAACTATGTGAATGACTTA 57.968 33.333 0.00 0.00 0.00 2.24
387 388 7.819900 GTCAACCTAGAACTATGTGAATGACTT 59.180 37.037 0.00 0.00 31.94 3.01
388 389 7.324178 GTCAACCTAGAACTATGTGAATGACT 58.676 38.462 0.00 0.00 31.94 3.41
389 390 6.253727 CGTCAACCTAGAACTATGTGAATGAC 59.746 42.308 0.00 0.00 0.00 3.06
390 391 6.152154 TCGTCAACCTAGAACTATGTGAATGA 59.848 38.462 0.00 0.00 0.00 2.57
391 392 6.330278 TCGTCAACCTAGAACTATGTGAATG 58.670 40.000 0.00 0.00 0.00 2.67
392 393 6.525578 TCGTCAACCTAGAACTATGTGAAT 57.474 37.500 0.00 0.00 0.00 2.57
393 394 5.970317 TCGTCAACCTAGAACTATGTGAA 57.030 39.130 0.00 0.00 0.00 3.18
394 395 6.525578 AATCGTCAACCTAGAACTATGTGA 57.474 37.500 0.00 0.00 0.00 3.58
395 396 8.592998 GTTAAATCGTCAACCTAGAACTATGTG 58.407 37.037 0.00 0.00 0.00 3.21
396 397 8.529476 AGTTAAATCGTCAACCTAGAACTATGT 58.471 33.333 0.00 0.00 0.00 2.29
397 398 8.928270 AGTTAAATCGTCAACCTAGAACTATG 57.072 34.615 0.00 0.00 0.00 2.23
400 401 8.968969 AGATAGTTAAATCGTCAACCTAGAACT 58.031 33.333 0.00 0.00 0.00 3.01
515 516 9.831737 GGTCATCGATTTGAGGATTTAAATATG 57.168 33.333 0.00 0.00 39.96 1.78
516 517 9.799106 AGGTCATCGATTTGAGGATTTAAATAT 57.201 29.630 0.00 0.00 39.96 1.28
518 519 9.277783 CTAGGTCATCGATTTGAGGATTTAAAT 57.722 33.333 0.00 0.00 39.96 1.40
519 520 8.482943 TCTAGGTCATCGATTTGAGGATTTAAA 58.517 33.333 0.00 0.00 39.96 1.52
520 521 8.018537 TCTAGGTCATCGATTTGAGGATTTAA 57.981 34.615 0.00 0.00 39.96 1.52
521 522 7.597288 TCTAGGTCATCGATTTGAGGATTTA 57.403 36.000 0.00 0.00 39.96 1.40
522 523 6.485830 TCTAGGTCATCGATTTGAGGATTT 57.514 37.500 0.00 0.00 39.96 2.17
523 524 6.284459 GTTCTAGGTCATCGATTTGAGGATT 58.716 40.000 0.00 0.00 39.96 3.01
524 525 5.221541 GGTTCTAGGTCATCGATTTGAGGAT 60.222 44.000 0.00 0.00 39.96 3.24
525 526 4.099573 GGTTCTAGGTCATCGATTTGAGGA 59.900 45.833 0.00 0.00 34.44 3.71
526 527 4.141937 TGGTTCTAGGTCATCGATTTGAGG 60.142 45.833 0.00 0.00 0.00 3.86
527 528 4.806247 GTGGTTCTAGGTCATCGATTTGAG 59.194 45.833 0.00 0.00 0.00 3.02
528 529 4.676986 CGTGGTTCTAGGTCATCGATTTGA 60.677 45.833 0.00 0.00 0.00 2.69
529 530 3.551890 CGTGGTTCTAGGTCATCGATTTG 59.448 47.826 0.00 0.00 0.00 2.32
530 531 3.782046 CGTGGTTCTAGGTCATCGATTT 58.218 45.455 0.00 0.00 0.00 2.17
531 532 2.481449 GCGTGGTTCTAGGTCATCGATT 60.481 50.000 0.00 0.00 0.00 3.34
532 533 1.067212 GCGTGGTTCTAGGTCATCGAT 59.933 52.381 0.00 0.00 0.00 3.59
533 534 0.454600 GCGTGGTTCTAGGTCATCGA 59.545 55.000 0.00 0.00 0.00 3.59
534 535 0.866061 CGCGTGGTTCTAGGTCATCG 60.866 60.000 0.00 0.00 0.00 3.84
535 536 0.454600 TCGCGTGGTTCTAGGTCATC 59.545 55.000 5.77 0.00 0.00 2.92
536 537 0.456221 CTCGCGTGGTTCTAGGTCAT 59.544 55.000 5.77 0.00 0.00 3.06
537 538 0.892358 ACTCGCGTGGTTCTAGGTCA 60.892 55.000 13.32 0.00 0.00 4.02
538 539 0.456312 CACTCGCGTGGTTCTAGGTC 60.456 60.000 13.32 0.00 37.50 3.85
539 540 0.892358 TCACTCGCGTGGTTCTAGGT 60.892 55.000 13.32 0.00 41.53 3.08
540 541 0.456221 ATCACTCGCGTGGTTCTAGG 59.544 55.000 13.32 0.00 41.53 3.02
541 542 2.279582 AATCACTCGCGTGGTTCTAG 57.720 50.000 13.32 0.00 40.35 2.43
542 543 2.736144 AAATCACTCGCGTGGTTCTA 57.264 45.000 13.32 0.00 43.45 2.10
543 544 2.736144 TAAATCACTCGCGTGGTTCT 57.264 45.000 13.32 0.00 43.45 3.01
544 545 3.369756 TGAATAAATCACTCGCGTGGTTC 59.630 43.478 13.32 3.71 43.45 3.62
545 546 3.331150 TGAATAAATCACTCGCGTGGTT 58.669 40.909 13.32 1.17 46.09 3.67
546 547 2.967362 TGAATAAATCACTCGCGTGGT 58.033 42.857 13.32 7.37 41.53 4.16
556 557 5.531122 CCTCCGTCTAGGTGAATAAATCA 57.469 43.478 0.00 0.00 41.99 2.57
567 568 2.104451 TGAGCTACTACCTCCGTCTAGG 59.896 54.545 0.00 0.00 42.82 3.02
568 569 3.132925 GTGAGCTACTACCTCCGTCTAG 58.867 54.545 0.00 0.00 0.00 2.43
569 570 2.502947 TGTGAGCTACTACCTCCGTCTA 59.497 50.000 0.00 0.00 0.00 2.59
570 571 1.281287 TGTGAGCTACTACCTCCGTCT 59.719 52.381 0.00 0.00 0.00 4.18
571 572 1.401199 GTGTGAGCTACTACCTCCGTC 59.599 57.143 0.00 0.00 0.00 4.79
572 573 1.461559 GTGTGAGCTACTACCTCCGT 58.538 55.000 0.00 0.00 0.00 4.69
573 574 0.377554 CGTGTGAGCTACTACCTCCG 59.622 60.000 0.00 0.00 0.00 4.63
574 575 1.401199 GACGTGTGAGCTACTACCTCC 59.599 57.143 0.00 0.00 0.00 4.30
575 576 2.358015 AGACGTGTGAGCTACTACCTC 58.642 52.381 0.00 0.00 0.00 3.85
576 577 2.493414 AGACGTGTGAGCTACTACCT 57.507 50.000 0.00 0.00 0.00 3.08
577 578 3.005554 TGTAGACGTGTGAGCTACTACC 58.994 50.000 11.33 0.00 36.38 3.18
578 579 4.391216 TCTTGTAGACGTGTGAGCTACTAC 59.609 45.833 11.33 6.43 36.38 2.73
579 580 4.572909 TCTTGTAGACGTGTGAGCTACTA 58.427 43.478 11.33 4.73 36.38 1.82
580 581 3.409570 TCTTGTAGACGTGTGAGCTACT 58.590 45.455 11.33 0.00 36.38 2.57
581 582 3.826236 TCTTGTAGACGTGTGAGCTAC 57.174 47.619 0.00 0.00 36.06 3.58
582 583 4.007659 TCATCTTGTAGACGTGTGAGCTA 58.992 43.478 0.00 0.00 0.00 3.32
583 584 2.820197 TCATCTTGTAGACGTGTGAGCT 59.180 45.455 0.00 0.00 0.00 4.09
584 585 2.917971 GTCATCTTGTAGACGTGTGAGC 59.082 50.000 0.00 0.00 0.00 4.26
601 602 3.704566 ACCTATACATCACCACACGTCAT 59.295 43.478 0.00 0.00 0.00 3.06
602 603 3.093814 ACCTATACATCACCACACGTCA 58.906 45.455 0.00 0.00 0.00 4.35
603 604 3.795623 ACCTATACATCACCACACGTC 57.204 47.619 0.00 0.00 0.00 4.34
604 605 3.259876 ACAACCTATACATCACCACACGT 59.740 43.478 0.00 0.00 0.00 4.49
605 606 3.857052 ACAACCTATACATCACCACACG 58.143 45.455 0.00 0.00 0.00 4.49
607 608 6.839134 AGATCTACAACCTATACATCACCACA 59.161 38.462 0.00 0.00 0.00 4.17
608 609 7.291411 AGATCTACAACCTATACATCACCAC 57.709 40.000 0.00 0.00 0.00 4.16
609 610 7.202001 CCAAGATCTACAACCTATACATCACCA 60.202 40.741 0.00 0.00 0.00 4.17
657 668 1.192312 CATCACACGCACACACACTAC 59.808 52.381 0.00 0.00 0.00 2.73
658 669 1.202475 ACATCACACGCACACACACTA 60.202 47.619 0.00 0.00 0.00 2.74
659 670 0.461870 ACATCACACGCACACACACT 60.462 50.000 0.00 0.00 0.00 3.55
660 671 0.316114 CACATCACACGCACACACAC 60.316 55.000 0.00 0.00 0.00 3.82
661 672 0.742635 ACACATCACACGCACACACA 60.743 50.000 0.00 0.00 0.00 3.72
662 673 0.316114 CACACATCACACGCACACAC 60.316 55.000 0.00 0.00 0.00 3.82
663 674 0.742635 ACACACATCACACGCACACA 60.743 50.000 0.00 0.00 0.00 3.72
664 675 0.316114 CACACACATCACACGCACAC 60.316 55.000 0.00 0.00 0.00 3.82
665 676 0.742635 ACACACACATCACACGCACA 60.743 50.000 0.00 0.00 0.00 4.57
698 718 0.522180 ATCCAGCCGTATCGATCGAC 59.478 55.000 22.06 8.53 0.00 4.20
829 853 5.808540 GCATTGTGTATACTACGTTGGAAGA 59.191 40.000 4.17 0.00 0.00 2.87
841 865 3.477530 GGGAAGAGGGCATTGTGTATAC 58.522 50.000 0.00 0.00 0.00 1.47
842 866 2.104111 CGGGAAGAGGGCATTGTGTATA 59.896 50.000 0.00 0.00 0.00 1.47
843 867 1.134098 CGGGAAGAGGGCATTGTGTAT 60.134 52.381 0.00 0.00 0.00 2.29
859 883 1.386525 GCGGATATATACGGCCGGGA 61.387 60.000 31.76 18.02 43.73 5.14
905 936 1.810030 CTAGCTCGGTCGTTTGGGC 60.810 63.158 0.00 0.00 0.00 5.36
922 955 2.745968 TGGTTTGTTTCTTGAAGGGCT 58.254 42.857 0.00 0.00 0.00 5.19
923 956 3.069443 TGATGGTTTGTTTCTTGAAGGGC 59.931 43.478 0.00 0.00 0.00 5.19
924 957 4.935352 TGATGGTTTGTTTCTTGAAGGG 57.065 40.909 0.00 0.00 0.00 3.95
925 958 6.072728 TCGTATGATGGTTTGTTTCTTGAAGG 60.073 38.462 0.00 0.00 0.00 3.46
926 959 6.898041 TCGTATGATGGTTTGTTTCTTGAAG 58.102 36.000 0.00 0.00 0.00 3.02
927 960 6.708502 TCTCGTATGATGGTTTGTTTCTTGAA 59.291 34.615 0.00 0.00 0.00 2.69
933 966 5.408604 GTCTGTCTCGTATGATGGTTTGTTT 59.591 40.000 0.00 0.00 0.00 2.83
1206 1240 1.616921 CACCTGGAAGATGCCCCAT 59.383 57.895 0.00 0.00 34.07 4.00
1387 1421 2.232941 TGTGTACCCGCCAAAACAAAAA 59.767 40.909 0.00 0.00 0.00 1.94
1388 1422 1.822990 TGTGTACCCGCCAAAACAAAA 59.177 42.857 0.00 0.00 0.00 2.44
1392 1426 1.280444 CGTGTGTACCCGCCAAAAC 59.720 57.895 0.00 0.00 0.00 2.43
1451 1491 9.199982 ACTGCAATCTGTTTCATCTTAATTTTG 57.800 29.630 0.00 0.00 0.00 2.44
1483 1576 7.819415 CCATTCTTCCTTCCTTTATTCAAAACC 59.181 37.037 0.00 0.00 0.00 3.27
1493 1586 2.619074 CGAGGCCATTCTTCCTTCCTTT 60.619 50.000 5.01 0.00 31.71 3.11
1503 1596 0.457851 CTCTTCGACGAGGCCATTCT 59.542 55.000 10.95 0.00 0.00 2.40
1506 1599 0.457851 CTTCTCTTCGACGAGGCCAT 59.542 55.000 17.85 0.00 0.00 4.40
1509 1602 0.526662 TTCCTTCTCTTCGACGAGGC 59.473 55.000 17.85 0.00 0.00 4.70
1514 1607 2.172679 AGTCCCTTCCTTCTCTTCGAC 58.827 52.381 0.00 0.00 0.00 4.20
1515 1608 2.563179 CAAGTCCCTTCCTTCTCTTCGA 59.437 50.000 0.00 0.00 0.00 3.71
1518 1611 1.352687 GGCAAGTCCCTTCCTTCTCTT 59.647 52.381 0.00 0.00 0.00 2.85
1525 1618 1.064463 TGATGATGGCAAGTCCCTTCC 60.064 52.381 0.00 0.00 0.00 3.46
1535 1628 2.718062 AGATAATGGGGTGATGATGGCA 59.282 45.455 0.00 0.00 0.00 4.92
1554 1647 6.183360 CCGTCCACTTTGAATCCTAAGATAGA 60.183 42.308 0.00 0.00 30.42 1.98
1565 1658 1.238439 CACTGCCGTCCACTTTGAAT 58.762 50.000 0.00 0.00 0.00 2.57
1570 1663 2.111043 CACCACTGCCGTCCACTT 59.889 61.111 0.00 0.00 0.00 3.16
1571 1664 3.941188 CCACCACTGCCGTCCACT 61.941 66.667 0.00 0.00 0.00 4.00
1577 1670 4.974721 AAAGCCCCACCACTGCCG 62.975 66.667 0.00 0.00 0.00 5.69
1579 1672 3.994853 GCAAAGCCCCACCACTGC 61.995 66.667 0.00 0.00 0.00 4.40
1580 1673 3.305516 GGCAAAGCCCCACCACTG 61.306 66.667 0.00 0.00 44.06 3.66
1618 1724 2.524204 GCCATCCCTCTAGCCCCAG 61.524 68.421 0.00 0.00 0.00 4.45
1625 1731 0.832135 CGCCCTTAGCCATCCCTCTA 60.832 60.000 0.00 0.00 38.78 2.43
1631 1737 2.040009 TAGCACCGCCCTTAGCCATC 62.040 60.000 0.00 0.00 38.78 3.51
1637 1743 0.468226 CCATTCTAGCACCGCCCTTA 59.532 55.000 0.00 0.00 0.00 2.69
1638 1744 1.224592 CCATTCTAGCACCGCCCTT 59.775 57.895 0.00 0.00 0.00 3.95
1645 1751 1.819632 CCCACCGCCATTCTAGCAC 60.820 63.158 0.00 0.00 0.00 4.40
1647 1753 2.203209 CCCCACCGCCATTCTAGC 60.203 66.667 0.00 0.00 0.00 3.42
1649 1755 3.804329 GCCCCCACCGCCATTCTA 61.804 66.667 0.00 0.00 0.00 2.10
1657 1763 4.473520 CTAGCACTGCCCCCACCG 62.474 72.222 0.00 0.00 0.00 4.94
1658 1764 1.926426 ATTCTAGCACTGCCCCCACC 61.926 60.000 0.00 0.00 0.00 4.61
1659 1765 0.749454 CATTCTAGCACTGCCCCCAC 60.749 60.000 0.00 0.00 0.00 4.61
1660 1766 1.609239 CATTCTAGCACTGCCCCCA 59.391 57.895 0.00 0.00 0.00 4.96
1661 1767 1.152881 CCATTCTAGCACTGCCCCC 60.153 63.158 0.00 0.00 0.00 5.40
1662 1768 1.825622 GCCATTCTAGCACTGCCCC 60.826 63.158 0.00 0.00 0.00 5.80
1663 1769 2.182842 CGCCATTCTAGCACTGCCC 61.183 63.158 0.00 0.00 0.00 5.36
1664 1770 2.182842 CCGCCATTCTAGCACTGCC 61.183 63.158 0.00 0.00 0.00 4.85
1665 1771 1.450312 ACCGCCATTCTAGCACTGC 60.450 57.895 0.00 0.00 0.00 4.40
1666 1772 1.091771 CCACCGCCATTCTAGCACTG 61.092 60.000 0.00 0.00 0.00 3.66
1667 1773 1.221840 CCACCGCCATTCTAGCACT 59.778 57.895 0.00 0.00 0.00 4.40
1668 1774 1.819632 CCCACCGCCATTCTAGCAC 60.820 63.158 0.00 0.00 0.00 4.40
1669 1775 2.297895 ACCCACCGCCATTCTAGCA 61.298 57.895 0.00 0.00 0.00 3.49
1670 1776 1.819632 CACCCACCGCCATTCTAGC 60.820 63.158 0.00 0.00 0.00 3.42
1671 1777 1.153168 CCACCCACCGCCATTCTAG 60.153 63.158 0.00 0.00 0.00 2.43
1672 1778 0.986019 ATCCACCCACCGCCATTCTA 60.986 55.000 0.00 0.00 0.00 2.10
1687 1793 1.691219 GCCCTTCCCTCAACATCCA 59.309 57.895 0.00 0.00 0.00 3.41
1691 1797 2.592993 CCTCGCCCTTCCCTCAACA 61.593 63.158 0.00 0.00 0.00 3.33
1699 1805 2.279784 CTCATCGCCTCGCCCTTC 60.280 66.667 0.00 0.00 0.00 3.46
1700 1806 3.854669 CCTCATCGCCTCGCCCTT 61.855 66.667 0.00 0.00 0.00 3.95
1713 1819 4.383861 CGCTCCAGCACTGCCTCA 62.384 66.667 0.00 0.00 42.21 3.86
1735 1841 1.766059 AGACCACCACTGCCTGTCA 60.766 57.895 0.00 0.00 0.00 3.58
1744 1850 3.041940 CGAACCGCAGACCACCAC 61.042 66.667 0.00 0.00 0.00 4.16
1779 1885 2.038426 CACATACTGTCTCACCCAACCA 59.962 50.000 0.00 0.00 0.00 3.67
1780 1886 2.301870 TCACATACTGTCTCACCCAACC 59.698 50.000 0.00 0.00 0.00 3.77
1782 1888 2.567169 CCTCACATACTGTCTCACCCAA 59.433 50.000 0.00 0.00 0.00 4.12
1784 1890 2.457598 TCCTCACATACTGTCTCACCC 58.542 52.381 0.00 0.00 0.00 4.61
1787 1893 5.325239 TCTTCTTCCTCACATACTGTCTCA 58.675 41.667 0.00 0.00 0.00 3.27
1788 1894 5.678616 GCTCTTCTTCCTCACATACTGTCTC 60.679 48.000 0.00 0.00 0.00 3.36
1796 1903 2.305343 AGCTTGCTCTTCTTCCTCACAT 59.695 45.455 0.00 0.00 0.00 3.21
1827 1934 0.179067 ACGTCCAGCCTTCGTTTTCA 60.179 50.000 0.00 0.00 34.07 2.69
1830 1937 1.342174 TCTAACGTCCAGCCTTCGTTT 59.658 47.619 7.42 0.00 43.56 3.60
1831 1938 0.963962 TCTAACGTCCAGCCTTCGTT 59.036 50.000 7.29 7.29 46.70 3.85
1832 1939 1.183549 ATCTAACGTCCAGCCTTCGT 58.816 50.000 0.00 0.00 39.49 3.85
1842 1949 6.436843 ACCATTGGATCAAAATCTAACGTC 57.563 37.500 10.37 0.00 35.48 4.34
1843 1950 6.834168 AACCATTGGATCAAAATCTAACGT 57.166 33.333 10.37 0.00 35.48 3.99
1862 1969 7.334921 ACGGTTCAATCGATTCTATTTTAACCA 59.665 33.333 7.92 0.00 33.38 3.67
1897 2004 2.164624 GGCTACAAGACAGTCGACAGAT 59.835 50.000 19.50 1.62 0.00 2.90
1900 2007 0.240145 CGGCTACAAGACAGTCGACA 59.760 55.000 19.50 0.00 43.67 4.35
1903 2010 0.388649 AAGCGGCTACAAGACAGTCG 60.389 55.000 1.35 0.00 43.80 4.18
2195 2314 0.692476 CCACCTTCTGGTCCATGTCA 59.308 55.000 0.00 0.00 46.60 3.58
2357 2476 1.760875 GGAGATGGGCTGGACGGTA 60.761 63.158 0.00 0.00 0.00 4.02
2668 2812 3.000819 TCGGCGAAGGTGATGGGT 61.001 61.111 7.35 0.00 0.00 4.51
2812 2959 3.959991 GAGAGACTTGGTGGCCGCC 62.960 68.421 29.34 29.34 0.00 6.13
2813 2960 2.435059 GAGAGACTTGGTGGCCGC 60.435 66.667 8.12 8.12 0.00 6.53
2815 2962 0.951040 CGTTGAGAGACTTGGTGGCC 60.951 60.000 0.00 0.00 0.00 5.36
2936 3089 2.292569 CCTGCTACACACGTACGGATAT 59.707 50.000 21.06 4.92 0.00 1.63
3011 3164 5.760253 CGCCAAACTCATGATAACTCCTTAT 59.240 40.000 0.00 0.00 0.00 1.73
3012 3165 5.116180 CGCCAAACTCATGATAACTCCTTA 58.884 41.667 0.00 0.00 0.00 2.69
3013 3166 3.941483 CGCCAAACTCATGATAACTCCTT 59.059 43.478 0.00 0.00 0.00 3.36
3014 3167 3.055094 ACGCCAAACTCATGATAACTCCT 60.055 43.478 0.00 0.00 0.00 3.69
3019 3172 2.161410 GCACACGCCAAACTCATGATAA 59.839 45.455 0.00 0.00 0.00 1.75
3024 3177 0.534877 TCTGCACACGCCAAACTCAT 60.535 50.000 0.00 0.00 37.32 2.90
3055 3208 2.932614 CCAGAAGCCAGTACGAAATGAG 59.067 50.000 0.00 0.00 0.00 2.90
3056 3209 2.301870 ACCAGAAGCCAGTACGAAATGA 59.698 45.455 0.00 0.00 0.00 2.57
3057 3210 2.699954 ACCAGAAGCCAGTACGAAATG 58.300 47.619 0.00 0.00 0.00 2.32
3076 3229 0.251073 ACCACACGGCTGGGTTATAC 59.749 55.000 0.00 0.00 35.34 1.47
3108 3261 3.030291 ACAACTCATGTGCCCAAGAAAA 58.970 40.909 0.00 0.00 41.93 2.29
3113 3266 2.064434 TCAACAACTCATGTGCCCAA 57.936 45.000 0.00 0.00 42.99 4.12
3116 3269 8.931385 AAATATAAATCAACAACTCATGTGCC 57.069 30.769 0.00 0.00 42.99 5.01
3136 3289 9.106070 AGCGGTTCGTTATCTTAAGAAAAATAT 57.894 29.630 9.71 0.00 0.00 1.28
3137 3290 8.483307 AGCGGTTCGTTATCTTAAGAAAAATA 57.517 30.769 9.71 0.00 0.00 1.40
3138 3291 7.373778 AGCGGTTCGTTATCTTAAGAAAAAT 57.626 32.000 9.71 0.00 0.00 1.82
3139 3292 6.790285 AGCGGTTCGTTATCTTAAGAAAAA 57.210 33.333 9.71 4.46 0.00 1.94
3140 3293 7.412237 GCTTAGCGGTTCGTTATCTTAAGAAAA 60.412 37.037 9.71 0.00 0.00 2.29
3141 3294 6.035327 GCTTAGCGGTTCGTTATCTTAAGAAA 59.965 38.462 9.71 2.88 0.00 2.52
3142 3295 5.517770 GCTTAGCGGTTCGTTATCTTAAGAA 59.482 40.000 9.71 0.00 0.00 2.52
3143 3296 5.039333 GCTTAGCGGTTCGTTATCTTAAGA 58.961 41.667 7.82 7.82 0.00 2.10
3144 3297 5.041940 AGCTTAGCGGTTCGTTATCTTAAG 58.958 41.667 0.00 0.00 0.00 1.85
3145 3298 4.802039 CAGCTTAGCGGTTCGTTATCTTAA 59.198 41.667 0.00 0.00 0.00 1.85
3146 3299 4.142315 ACAGCTTAGCGGTTCGTTATCTTA 60.142 41.667 3.79 0.00 32.29 2.10
3147 3300 3.187700 CAGCTTAGCGGTTCGTTATCTT 58.812 45.455 0.00 0.00 0.00 2.40
3148 3301 2.165845 ACAGCTTAGCGGTTCGTTATCT 59.834 45.455 3.79 0.00 32.29 1.98
3149 3302 2.281762 CACAGCTTAGCGGTTCGTTATC 59.718 50.000 7.36 0.00 34.30 1.75
3150 3303 2.268298 CACAGCTTAGCGGTTCGTTAT 58.732 47.619 7.36 0.00 34.30 1.89
3151 3304 1.000060 ACACAGCTTAGCGGTTCGTTA 60.000 47.619 7.36 0.00 34.30 3.18
3152 3305 0.249741 ACACAGCTTAGCGGTTCGTT 60.250 50.000 7.36 0.00 34.30 3.85
3153 3306 0.944311 CACACAGCTTAGCGGTTCGT 60.944 55.000 7.36 0.84 34.30 3.85
3154 3307 1.781555 CACACAGCTTAGCGGTTCG 59.218 57.895 7.36 0.16 34.30 3.95
3155 3308 1.227999 TGCACACAGCTTAGCGGTTC 61.228 55.000 7.36 1.16 45.94 3.62
3156 3309 1.227823 TGCACACAGCTTAGCGGTT 60.228 52.632 7.36 0.00 45.94 4.44
3157 3310 1.961277 GTGCACACAGCTTAGCGGT 60.961 57.895 13.17 3.79 45.94 5.68
3158 3311 1.300971 ATGTGCACACAGCTTAGCGG 61.301 55.000 24.37 2.25 45.48 5.52
3159 3312 0.179207 CATGTGCACACAGCTTAGCG 60.179 55.000 24.37 0.00 45.48 4.26
3160 3313 1.129998 CTCATGTGCACACAGCTTAGC 59.870 52.381 24.37 0.00 45.48 3.09
3161 3314 2.420642 ACTCATGTGCACACAGCTTAG 58.579 47.619 24.37 14.78 45.48 2.18
3162 3315 2.549064 ACTCATGTGCACACAGCTTA 57.451 45.000 24.37 0.00 45.48 3.09
3163 3316 1.335810 CAACTCATGTGCACACAGCTT 59.664 47.619 24.37 13.87 45.48 3.74
3164 3317 0.949397 CAACTCATGTGCACACAGCT 59.051 50.000 24.37 9.71 45.48 4.24
3165 3318 0.664761 ACAACTCATGTGCACACAGC 59.335 50.000 24.37 0.00 45.48 4.40
3166 3319 2.675767 GACAACTCATGTGCACACAG 57.324 50.000 24.37 22.34 45.48 3.66
3173 3326 2.749776 TGTACGTGGACAACTCATGTG 58.250 47.619 0.00 0.00 44.12 3.21
3175 3328 4.378356 CCAAATGTACGTGGACAACTCATG 60.378 45.833 0.00 0.00 37.03 3.07
3176 3329 3.751175 CCAAATGTACGTGGACAACTCAT 59.249 43.478 0.00 0.00 37.03 2.90
3177 3330 3.135225 CCAAATGTACGTGGACAACTCA 58.865 45.455 0.00 0.00 37.03 3.41
3178 3331 3.395639 TCCAAATGTACGTGGACAACTC 58.604 45.455 0.00 0.00 39.04 3.01
3179 3332 3.478857 TCCAAATGTACGTGGACAACT 57.521 42.857 0.00 0.00 39.04 3.16
3180 3333 3.605231 CGTTCCAAATGTACGTGGACAAC 60.605 47.826 11.22 8.00 43.67 3.32
3181 3334 2.544686 CGTTCCAAATGTACGTGGACAA 59.455 45.455 11.22 0.00 43.67 3.18
3182 3335 2.136728 CGTTCCAAATGTACGTGGACA 58.863 47.619 11.22 0.00 43.67 4.02
3183 3336 1.461897 CCGTTCCAAATGTACGTGGAC 59.538 52.381 11.22 7.16 43.67 4.02
3184 3337 1.798283 CCGTTCCAAATGTACGTGGA 58.202 50.000 0.00 8.30 42.27 4.02
3185 3338 0.167251 GCCGTTCCAAATGTACGTGG 59.833 55.000 0.00 4.12 36.13 4.94
3186 3339 0.167251 GGCCGTTCCAAATGTACGTG 59.833 55.000 0.00 0.00 33.68 4.49
3187 3340 0.250381 TGGCCGTTCCAAATGTACGT 60.250 50.000 0.00 0.00 43.21 3.57
3188 3341 2.545875 TGGCCGTTCCAAATGTACG 58.454 52.632 0.00 0.00 43.21 3.67
3196 3349 1.990160 AAGAGGTGTTGGCCGTTCCA 61.990 55.000 0.00 0.00 44.85 3.53
3197 3350 0.822121 AAAGAGGTGTTGGCCGTTCC 60.822 55.000 0.00 0.00 0.00 3.62
3198 3351 1.029681 AAAAGAGGTGTTGGCCGTTC 58.970 50.000 0.00 0.00 0.00 3.95
3199 3352 1.480789 AAAAAGAGGTGTTGGCCGTT 58.519 45.000 0.00 0.00 0.00 4.44
3200 3353 3.200918 AAAAAGAGGTGTTGGCCGT 57.799 47.368 0.00 0.00 0.00 5.68
3250 3403 3.557595 CGCCTGTTGAATAAAGAGCCTAG 59.442 47.826 0.00 0.00 0.00 3.02
3252 3405 2.359900 CGCCTGTTGAATAAAGAGCCT 58.640 47.619 0.00 0.00 0.00 4.58
3282 3435 1.230324 GGCTGAGGTTGTTCAGTCAC 58.770 55.000 2.97 0.00 46.51 3.67
3292 3445 4.357279 GGCTGGCTGGCTGAGGTT 62.357 66.667 12.22 0.00 38.32 3.50
3294 3447 4.798344 CTGGCTGGCTGGCTGAGG 62.798 72.222 18.27 3.56 41.53 3.86
3339 3492 1.235281 GGCTCACCGTTTCCCACTTC 61.235 60.000 0.00 0.00 0.00 3.01
3342 3495 2.112297 TGGCTCACCGTTTCCCAC 59.888 61.111 0.00 0.00 39.70 4.61
3344 3497 0.672711 GTAGTGGCTCACCGTTTCCC 60.673 60.000 2.18 0.00 39.70 3.97
3345 3498 0.034337 TGTAGTGGCTCACCGTTTCC 59.966 55.000 2.18 0.00 39.70 3.13
3359 3534 8.191446 TCTAGTCGTTCTACGTACTAATGTAGT 58.809 37.037 0.00 0.00 43.16 2.73
3362 3537 7.834068 TTCTAGTCGTTCTACGTACTAATGT 57.166 36.000 0.00 0.00 43.14 2.71
3363 3538 8.993856 GTTTTCTAGTCGTTCTACGTACTAATG 58.006 37.037 0.00 0.00 43.14 1.90
3372 3547 3.568538 TGCGGTTTTCTAGTCGTTCTAC 58.431 45.455 0.00 0.00 0.00 2.59
3373 3548 3.829948 CTGCGGTTTTCTAGTCGTTCTA 58.170 45.455 0.00 0.00 0.00 2.10
3374 3549 2.673833 CTGCGGTTTTCTAGTCGTTCT 58.326 47.619 0.00 0.00 0.00 3.01
3375 3550 1.126296 GCTGCGGTTTTCTAGTCGTTC 59.874 52.381 0.00 0.00 0.00 3.95
3376 3551 1.145803 GCTGCGGTTTTCTAGTCGTT 58.854 50.000 0.00 0.00 0.00 3.85
3377 3552 0.317479 AGCTGCGGTTTTCTAGTCGT 59.683 50.000 0.00 0.00 0.00 4.34
3392 3567 0.034767 TGCTCCAGGGATTCAAGCTG 60.035 55.000 0.00 0.00 34.11 4.24
3443 3618 9.125026 GAGAAAAGTCCATTGGTTATCACATAT 57.875 33.333 1.86 0.00 0.00 1.78
3444 3619 8.328758 AGAGAAAAGTCCATTGGTTATCACATA 58.671 33.333 1.86 0.00 0.00 2.29
3445 3620 7.121759 CAGAGAAAAGTCCATTGGTTATCACAT 59.878 37.037 1.86 0.00 0.00 3.21
3446 3621 6.430925 CAGAGAAAAGTCCATTGGTTATCACA 59.569 38.462 1.86 0.00 0.00 3.58
3457 3632 4.568592 GGGAATCACCAGAGAAAAGTCCAT 60.569 45.833 0.00 0.00 41.20 3.41
3469 3644 0.886490 GCGCCTATGGGAATCACCAG 60.886 60.000 0.00 0.00 45.20 4.00
3482 3657 3.384789 ACTGTCAAGATATTCAGCGCCTA 59.615 43.478 2.29 0.00 0.00 3.93
3486 3661 2.791560 CCGACTGTCAAGATATTCAGCG 59.208 50.000 8.73 0.00 0.00 5.18
3506 3681 5.531287 ACTTCAACAAGTGGTAATTGAGACC 59.469 40.000 0.00 0.00 41.64 3.85
3514 3689 3.935818 TGGGACTTCAACAAGTGGTAA 57.064 42.857 0.00 0.00 43.37 2.85
3536 3711 4.270834 TGCGATAAGTATAGCCCCTAGAG 58.729 47.826 0.00 0.00 34.04 2.43
3544 3719 6.033341 CCTCTTGAGATGCGATAAGTATAGC 58.967 44.000 0.00 0.00 35.29 2.97
3546 3721 5.105716 GGCCTCTTGAGATGCGATAAGTATA 60.106 44.000 0.00 0.00 36.70 1.47
3551 3726 1.762370 TGGCCTCTTGAGATGCGATAA 59.238 47.619 3.32 0.00 36.70 1.75
3561 3736 2.238084 TAGAGCTCTTGGCCTCTTGA 57.762 50.000 23.84 0.00 43.05 3.02
3563 3738 1.767681 CCATAGAGCTCTTGGCCTCTT 59.232 52.381 23.84 0.00 43.05 2.85
3564 3739 1.062581 TCCATAGAGCTCTTGGCCTCT 60.063 52.381 27.09 0.00 43.05 3.69
3567 3743 0.833287 TGTCCATAGAGCTCTTGGCC 59.167 55.000 27.09 21.33 43.05 5.36
3575 3751 3.292460 ACTGACCTACTGTCCATAGAGC 58.708 50.000 0.00 0.00 43.78 4.09
3579 3755 5.198965 GGAGTTACTGACCTACTGTCCATA 58.801 45.833 0.00 0.00 43.78 2.74
3588 3764 4.712476 GATACGAGGGAGTTACTGACCTA 58.288 47.826 5.36 0.00 32.42 3.08
3589 3765 3.553904 GATACGAGGGAGTTACTGACCT 58.446 50.000 5.08 5.08 35.67 3.85
3591 3767 2.290093 CCGATACGAGGGAGTTACTGAC 59.710 54.545 0.00 0.00 0.00 3.51
3597 3773 2.173519 TGTTTCCGATACGAGGGAGTT 58.826 47.619 0.00 0.00 33.01 3.01
3606 3782 2.605366 GAGAGCAGCTTGTTTCCGATAC 59.395 50.000 0.00 0.00 0.00 2.24
3609 3785 0.392706 TGAGAGCAGCTTGTTTCCGA 59.607 50.000 0.00 0.00 0.00 4.55
3644 3820 4.023193 GGGCAGGTATTATTGTCCGAAATG 60.023 45.833 0.00 0.00 28.05 2.32
3645 3821 4.142038 GGGCAGGTATTATTGTCCGAAAT 58.858 43.478 0.00 0.00 28.05 2.17
3651 3827 2.711547 AGGAGGGGCAGGTATTATTGTC 59.288 50.000 0.00 0.00 0.00 3.18
3652 3828 2.443255 CAGGAGGGGCAGGTATTATTGT 59.557 50.000 0.00 0.00 0.00 2.71
3682 3858 1.648467 GCAGACGGGGCAACTGATTC 61.648 60.000 0.00 0.00 34.07 2.52
3683 3859 1.675641 GCAGACGGGGCAACTGATT 60.676 57.895 0.00 0.00 34.07 2.57
3696 3875 4.201990 GGATGGATCAAGTTGAATGCAGAC 60.202 45.833 10.14 8.32 0.00 3.51
3701 3880 2.033801 GCCGGATGGATCAAGTTGAATG 59.966 50.000 10.14 0.00 37.49 2.67
3705 3884 0.107017 AGGCCGGATGGATCAAGTTG 60.107 55.000 5.05 0.00 37.49 3.16
3707 3886 0.692419 AGAGGCCGGATGGATCAAGT 60.692 55.000 5.05 0.00 37.49 3.16
3729 3908 1.071128 TGTGCAAAAATGGCAGGCC 59.929 52.632 2.62 2.62 42.85 5.19
3732 3911 2.172851 ATGGTGTGCAAAAATGGCAG 57.827 45.000 0.00 0.00 42.85 4.85
3769 3948 4.399395 TCTGGAGCTGCCGCCAAG 62.399 66.667 12.16 7.46 40.57 3.61
3813 3992 5.186409 GGAGTACCAACCACTACAGTCAATA 59.814 44.000 0.00 0.00 35.97 1.90
3822 4001 3.438183 GGAGAAGGAGTACCAACCACTA 58.562 50.000 0.00 0.00 38.94 2.74
3825 4004 1.652947 GGGAGAAGGAGTACCAACCA 58.347 55.000 0.00 0.00 38.94 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.