AutoCloner

Multiple sequence alignment - TraesCS2A01G492700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G492700	chr2A	100.000	2933	0	0	1	2933	724965702	724962770	0.000000e+00	5417.0
1	TraesCS2A01G492700	chr5A	98.303	2829	43	4	1	2825	564870652	564873479	0.000000e+00	4953.0
2	TraesCS2A01G492700	chr5A	97.881	2832	51	6	1	2824	579994671	579991841	0.000000e+00	4889.0
3	TraesCS2A01G492700	chr5A	94.825	1797	81	9	1032	2824	669688148	669689936	0.000000e+00	2793.0
4	TraesCS2A01G492700	chr5A	94.476	1050	34	11	1	1035	669686924	669687964	0.000000e+00	1596.0
5	TraesCS2A01G492700	chr7A	97.937	1842	35	3	984	2824	36253243	36251404	0.000000e+00	3188.0
6	TraesCS2A01G492700	chr7A	98.984	984	10	0	1	984	36254284	36253301	0.000000e+00	1762.0
7	TraesCS2A01G492700	chr3D	96.280	1801	56	8	1032	2825	555156088	555154292	0.000000e+00	2944.0
8	TraesCS2A01G492700	chr3D	96.957	460	14	0	525	984	555156833	555156374	0.000000e+00	773.0
9	TraesCS2A01G492700	chr3D	96.133	362	11	3	170	529	555175546	555175186	3.260000e-164	588.0
10	TraesCS2A01G492700	chr3D	98.077	52	1	0	984	1035	555156316	555156265	1.120000e-14	91.6
11	TraesCS2A01G492700	chr2D	94.883	1798	80	9	1032	2825	2170407	2172196	0.000000e+00	2800.0
12	TraesCS2A01G492700	chr2D	89.424	1806	160	19	1032	2824	340329760	340327973	0.000000e+00	2248.0
13	TraesCS2A01G492700	chr2D	96.211	475	13	2	566	1035	2169749	2170223	0.000000e+00	773.0
14	TraesCS2A01G492700	chr7B	94.380	1797	80	11	1032	2824	289877423	289879202	0.000000e+00	2739.0
15	TraesCS2A01G492700	chr7B	94.597	981	51	2	1	981	289876226	289877204	0.000000e+00	1517.0
16	TraesCS2A01G492700	chr7B	100.000	37	0	0	999	1035	289877203	289877239	5.250000e-08	69.4
17	TraesCS2A01G492700	chr1B	92.025	1743	123	11	1093	2824	669571284	669569547	0.000000e+00	2435.0
18	TraesCS2A01G492700	chr1B	91.793	658	41	6	348	1003	669572240	669571594	0.000000e+00	904.0
19	TraesCS2A01G492700	chr1B	89.390	377	35	5	1	375	669572666	669572293	1.230000e-128	470.0
20	TraesCS2A01G492700	chr2B	86.897	1824	179	25	1032	2822	758233762	758231966	0.000000e+00	1989.0
21	TraesCS2A01G492700	chr6B	91.045	737	54	5	1	735	316319979	316320705	0.000000e+00	985.0
22	TraesCS2A01G492700	chr7D	89.175	582	50	7	465	1034	26329889	26330469	0.000000e+00	713.0
23	TraesCS2A01G492700	chr7D	86.166	253	28	5	2	249	26328931	26329181	1.730000e-67	267.0
24	TraesCS2A01G492700	chr7D	98.148	108	2	0	2826	2933	216784760	216784867	3.860000e-44	189.0
25	TraesCS2A01G492700	chr7D	98.131	107	2	0	2827	2933	372713572	372713466	1.390000e-43	187.0
26	TraesCS2A01G492700	chr3A	89.803	559	40	6	490	1034	198182313	198182868	0.000000e+00	701.0
27	TraesCS2A01G492700	chr1D	98.113	106	2	0	2826	2931	383390348	383390453	4.990000e-43	185.0
28	TraesCS2A01G492700	chr1D	97.222	108	3	0	2826	2933	42201671	42201778	1.800000e-42	183.0
29	TraesCS2A01G492700	chr1D	97.222	108	3	0	2826	2933	383539792	383539685	1.800000e-42	183.0
30	TraesCS2A01G492700	chr6D	97.222	108	3	0	2826	2933	58121260	58121153	1.800000e-42	183.0
31	TraesCS2A01G492700	chr6D	97.222	108	3	0	2826	2933	75391182	75391075	1.800000e-42	183.0
32	TraesCS2A01G492700	chr4D	97.222	108	3	0	2826	2933	65953753	65953646	1.800000e-42	183.0
33	TraesCS2A01G492700	chr4D	97.222	108	3	0	2826	2933	502377333	502377440	1.800000e-42	183.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G492700	chr2A	724962770	724965702	2932	True	5417.000000	5417	100.000000	1	2933	1	chr2A.!!$R1	2932
1	TraesCS2A01G492700	chr5A	564870652	564873479	2827	False	4953.000000	4953	98.303000	1	2825	1	chr5A.!!$F1	2824
2	TraesCS2A01G492700	chr5A	579991841	579994671	2830	True	4889.000000	4889	97.881000	1	2824	1	chr5A.!!$R1	2823
3	TraesCS2A01G492700	chr5A	669686924	669689936	3012	False	2194.500000	2793	94.650500	1	2824	2	chr5A.!!$F2	2823
4	TraesCS2A01G492700	chr7A	36251404	36254284	2880	True	2475.000000	3188	98.460500	1	2824	2	chr7A.!!$R1	2823
5	TraesCS2A01G492700	chr3D	555154292	555156833	2541	True	1269.533333	2944	97.104667	525	2825	3	chr3D.!!$R2	2300
6	TraesCS2A01G492700	chr2D	340327973	340329760	1787	True	2248.000000	2248	89.424000	1032	2824	1	chr2D.!!$R1	1792
7	TraesCS2A01G492700	chr2D	2169749	2172196	2447	False	1786.500000	2800	95.547000	566	2825	2	chr2D.!!$F1	2259
8	TraesCS2A01G492700	chr7B	289876226	289879202	2976	False	1441.800000	2739	96.325667	1	2824	3	chr7B.!!$F1	2823
9	TraesCS2A01G492700	chr1B	669569547	669572666	3119	True	1269.666667	2435	91.069333	1	2824	3	chr1B.!!$R1	2823
10	TraesCS2A01G492700	chr2B	758231966	758233762	1796	True	1989.000000	1989	86.897000	1032	2822	1	chr2B.!!$R1	1790
11	TraesCS2A01G492700	chr6B	316319979	316320705	726	False	985.000000	985	91.045000	1	735	1	chr6B.!!$F1	734
12	TraesCS2A01G492700	chr7D	26328931	26330469	1538	False	490.000000	713	87.670500	2	1034	2	chr7D.!!$F2	1032
13	TraesCS2A01G492700	chr3A	198182313	198182868	555	False	701.000000	701	89.803000	490	1034	1	chr3A.!!$F1	544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
813	1448	0.698818	AAATTGCCGAGGGGACTTCT	59.301	50.0	0.0	0.0	44.43	2.85	F
845	1480	1.087501	GCTTGATTTCCCTGTCCGAC	58.912	55.0	0.0	0.0	0.00	4.79	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1671	2696	2.530460	TTCAATGCCACCAGCCTTAT	57.470	45.0	0.0	0.0	42.71	1.73	R
2833	3900	0.621082	GAAGCTAAGGGAAGCCAGGT	59.379	55.0	0.0	0.0	43.86	4.00	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
233	238	7.283807	CCTGTGTTTAATCCATCAATCAGATCA	59.716	37.037	0.00	0.00	33.72	2.92
685	1320	3.515502	CCATGTTCTTGTACCTCCTCTCA	59.484	47.826	0.00	0.00	0.00	3.27
813	1448	0.698818	AAATTGCCGAGGGGACTTCT	59.301	50.000	0.00	0.00	44.43	2.85
845	1480	1.087501	GCTTGATTTCCCTGTCCGAC	58.912	55.000	0.00	0.00	0.00	4.79
1193	2211	6.825721	GGATCTTACAGGTGAATCTGTTTCAT	59.174	38.462	0.75	0.00	45.77	2.57
1671	2696	3.401033	TCGGAGCACTGATCAAAGAAA	57.599	42.857	0.00	0.00	0.00	2.52
2825	3892	2.560542	AGCTCTGTCCTCTTGTAGTGTG	59.439	50.000	0.00	0.00	0.00	3.82
2826	3893	2.353208	GCTCTGTCCTCTTGTAGTGTGG	60.353	54.545	0.00	0.00	0.00	4.17
2827	3894	2.894126	CTCTGTCCTCTTGTAGTGTGGT	59.106	50.000	0.00	0.00	0.00	4.16
2828	3895	2.891580	TCTGTCCTCTTGTAGTGTGGTC	59.108	50.000	0.00	0.00	0.00	4.02
2829	3896	2.628178	CTGTCCTCTTGTAGTGTGGTCA	59.372	50.000	0.00	0.00	0.00	4.02
2830	3897	3.035363	TGTCCTCTTGTAGTGTGGTCAA	58.965	45.455	0.00	0.00	0.00	3.18
2831	3898	3.452990	TGTCCTCTTGTAGTGTGGTCAAA	59.547	43.478	0.00	0.00	0.00	2.69
2832	3899	4.102524	TGTCCTCTTGTAGTGTGGTCAAAT	59.897	41.667	0.00	0.00	0.00	2.32
2833	3900	5.305902	TGTCCTCTTGTAGTGTGGTCAAATA	59.694	40.000	0.00	0.00	0.00	1.40
2834	3901	5.638234	GTCCTCTTGTAGTGTGGTCAAATAC	59.362	44.000	0.00	0.00	0.00	1.89
2844	3911	1.763968	GGTCAAATACCTGGCTTCCC	58.236	55.000	0.00	0.00	45.75	3.97
2845	3912	1.285078	GGTCAAATACCTGGCTTCCCT	59.715	52.381	0.00	0.00	45.75	4.20
2846	3913	2.291605	GGTCAAATACCTGGCTTCCCTT	60.292	50.000	0.00	0.00	45.75	3.95
2847	3914	3.053917	GGTCAAATACCTGGCTTCCCTTA	60.054	47.826	0.00	0.00	45.75	2.69
2848	3915	4.200092	GTCAAATACCTGGCTTCCCTTAG	58.800	47.826	0.00	0.00	0.00	2.18
2849	3916	2.952310	CAAATACCTGGCTTCCCTTAGC	59.048	50.000	0.00	0.00	40.48	3.09
2850	3917	2.198334	ATACCTGGCTTCCCTTAGCT	57.802	50.000	0.00	0.00	40.99	3.32
2851	3918	1.966845	TACCTGGCTTCCCTTAGCTT	58.033	50.000	0.00	0.00	40.99	3.74
2852	3919	0.621082	ACCTGGCTTCCCTTAGCTTC	59.379	55.000	0.00	0.00	40.99	3.86
2853	3920	0.915364	CCTGGCTTCCCTTAGCTTCT	59.085	55.000	0.00	0.00	40.99	2.85
2854	3921	1.283321	CCTGGCTTCCCTTAGCTTCTT	59.717	52.381	0.00	0.00	40.99	2.52
2855	3922	2.363683	CTGGCTTCCCTTAGCTTCTTG	58.636	52.381	0.00	0.00	40.99	3.02
2856	3923	1.985159	TGGCTTCCCTTAGCTTCTTGA	59.015	47.619	0.00	0.00	40.99	3.02
2857	3924	2.578021	TGGCTTCCCTTAGCTTCTTGAT	59.422	45.455	0.00	0.00	40.99	2.57
2858	3925	2.948315	GGCTTCCCTTAGCTTCTTGATG	59.052	50.000	0.00	0.00	40.99	3.07
2859	3926	3.615155	GCTTCCCTTAGCTTCTTGATGT	58.385	45.455	0.00	0.00	38.15	3.06
2860	3927	3.625313	GCTTCCCTTAGCTTCTTGATGTC	59.375	47.826	0.00	0.00	38.15	3.06
2861	3928	3.914426	TCCCTTAGCTTCTTGATGTCC	57.086	47.619	0.00	0.00	0.00	4.02
2862	3929	3.454858	TCCCTTAGCTTCTTGATGTCCT	58.545	45.455	0.00	0.00	0.00	3.85
2863	3930	3.452627	TCCCTTAGCTTCTTGATGTCCTC	59.547	47.826	0.00	0.00	0.00	3.71
2864	3931	3.432890	CCCTTAGCTTCTTGATGTCCTCC	60.433	52.174	0.00	0.00	0.00	4.30
2865	3932	3.454082	CCTTAGCTTCTTGATGTCCTCCT	59.546	47.826	0.00	0.00	0.00	3.69
2866	3933	4.442753	CCTTAGCTTCTTGATGTCCTCCTC	60.443	50.000	0.00	0.00	0.00	3.71
2867	3934	2.831565	AGCTTCTTGATGTCCTCCTCT	58.168	47.619	0.00	0.00	0.00	3.69
2868	3935	2.500910	AGCTTCTTGATGTCCTCCTCTG	59.499	50.000	0.00	0.00	0.00	3.35
2869	3936	2.235898	GCTTCTTGATGTCCTCCTCTGT	59.764	50.000	0.00	0.00	0.00	3.41
2870	3937	3.859443	CTTCTTGATGTCCTCCTCTGTG	58.141	50.000	0.00	0.00	0.00	3.66
2871	3938	3.175438	TCTTGATGTCCTCCTCTGTGA	57.825	47.619	0.00	0.00	0.00	3.58
2872	3939	2.828520	TCTTGATGTCCTCCTCTGTGAC	59.171	50.000	0.00	0.00	0.00	3.67
2873	3940	2.309136	TGATGTCCTCCTCTGTGACA	57.691	50.000	0.00	0.00	42.65	3.58
2874	3941	2.174360	TGATGTCCTCCTCTGTGACAG	58.826	52.381	6.18	6.18	41.84	3.51
2875	3942	2.225117	TGATGTCCTCCTCTGTGACAGA	60.225	50.000	15.36	15.36	41.84	3.41
2882	3949	4.120244	TCTGTGACAGAGGAGGCC	57.880	61.111	11.93	0.00	35.39	5.19
2883	3950	1.156095	TCTGTGACAGAGGAGGCCA	59.844	57.895	11.93	0.00	35.39	5.36
2884	3951	0.252421	TCTGTGACAGAGGAGGCCAT	60.252	55.000	11.93	0.00	35.39	4.40
2885	3952	0.177604	CTGTGACAGAGGAGGCCATC	59.822	60.000	6.79	0.00	32.44	3.51
2894	3961	3.083997	GAGGCCATCCACCGACCT	61.084	66.667	5.01	0.00	33.74	3.85
2895	3962	2.610859	AGGCCATCCACCGACCTT	60.611	61.111	5.01	0.00	33.74	3.50
2896	3963	2.438434	GGCCATCCACCGACCTTG	60.438	66.667	0.00	0.00	0.00	3.61
2897	3964	2.668632	GCCATCCACCGACCTTGA	59.331	61.111	0.00	0.00	0.00	3.02
2898	3965	1.002624	GCCATCCACCGACCTTGAA	60.003	57.895	0.00	0.00	0.00	2.69
2899	3966	1.026718	GCCATCCACCGACCTTGAAG	61.027	60.000	0.00	0.00	0.00	3.02
2900	3967	0.392998	CCATCCACCGACCTTGAAGG	60.393	60.000	10.24	10.24	42.49	3.46
2912	3979	2.716217	CCTTGAAGGTTGGATCCAGAC	58.284	52.381	15.53	15.19	0.00	3.51
2913	3980	2.040278	CCTTGAAGGTTGGATCCAGACA	59.960	50.000	15.53	9.08	0.00	3.41
2914	3981	3.308688	CCTTGAAGGTTGGATCCAGACAT	60.309	47.826	15.53	11.02	0.00	3.06
2915	3982	3.354948	TGAAGGTTGGATCCAGACATG	57.645	47.619	15.53	0.00	0.00	3.21
2926	3993	1.826385	CCAGACATGGTTGAAGGTCC	58.174	55.000	0.00	0.00	42.17	4.46
2927	3994	1.073763	CCAGACATGGTTGAAGGTCCA	59.926	52.381	0.00	0.00	42.17	4.02
2928	3995	2.488891	CCAGACATGGTTGAAGGTCCAA	60.489	50.000	0.00	0.00	42.17	3.53
2929	3996	3.221771	CAGACATGGTTGAAGGTCCAAA	58.778	45.455	0.00	0.00	37.27	3.28
2930	3997	3.254166	CAGACATGGTTGAAGGTCCAAAG	59.746	47.826	0.00	0.00	37.27	2.77
2931	3998	1.963515	ACATGGTTGAAGGTCCAAAGC	59.036	47.619	0.00	0.00	37.27	3.51
2932	3999	1.068333	CATGGTTGAAGGTCCAAAGCG	60.068	52.381	0.00	0.00	37.27	4.68

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
57	60	3.386768	ACACACTGTCTGCTACGAATT	57.613	42.857	0.00	0.00	0.00	2.17
233	238	6.309357	ACATGCACCTACATATCAATGGATT	58.691	36.000	0.00	0.00	37.43	3.01
813	1448	6.719370	AGGGAAATCAAGCAATACAAGTTGTA	59.281	34.615	17.74	17.74	37.24	2.41
845	1480	4.466370	TCCACCTAGGACAAGATTGTAGTG	59.534	45.833	17.98	0.00	43.07	2.74
1193	2211	1.059584	TTCCCCTGCTGGTTCTGTGA	61.060	55.000	9.00	0.00	0.00	3.58
1671	2696	2.530460	TTCAATGCCACCAGCCTTAT	57.470	45.000	0.00	0.00	42.71	1.73
1968	3001	9.046296	CGACTATTGGTAGCTAAAATCTTCAAT	57.954	33.333	0.00	0.98	0.00	2.57
2631	3698	9.405587	GTGTTACAATTACATTGCAGTAACATT	57.594	29.630	20.19	4.02	43.98	2.71
2826	3893	2.808906	AGGGAAGCCAGGTATTTGAC	57.191	50.000	0.00	0.00	0.00	3.18
2827	3894	3.371595	GCTAAGGGAAGCCAGGTATTTGA	60.372	47.826	0.00	0.00	36.45	2.69
2828	3895	2.952310	GCTAAGGGAAGCCAGGTATTTG	59.048	50.000	0.00	0.00	36.45	2.32
2829	3896	2.853077	AGCTAAGGGAAGCCAGGTATTT	59.147	45.455	0.00	0.00	43.86	1.40
2830	3897	2.493091	AGCTAAGGGAAGCCAGGTATT	58.507	47.619	0.00	0.00	43.86	1.89
2831	3898	2.198334	AGCTAAGGGAAGCCAGGTAT	57.802	50.000	0.00	0.00	43.86	2.73
2832	3899	1.838077	GAAGCTAAGGGAAGCCAGGTA	59.162	52.381	0.00	0.00	43.86	3.08
2833	3900	0.621082	GAAGCTAAGGGAAGCCAGGT	59.379	55.000	0.00	0.00	43.86	4.00
2834	3901	0.915364	AGAAGCTAAGGGAAGCCAGG	59.085	55.000	0.00	0.00	43.86	4.45
2835	3902	2.026822	TCAAGAAGCTAAGGGAAGCCAG	60.027	50.000	0.00	0.00	43.86	4.85
2836	3903	1.985159	TCAAGAAGCTAAGGGAAGCCA	59.015	47.619	0.00	0.00	43.86	4.75
2837	3904	2.789409	TCAAGAAGCTAAGGGAAGCC	57.211	50.000	0.00	0.00	43.86	4.35
2838	3905	3.615155	ACATCAAGAAGCTAAGGGAAGC	58.385	45.455	0.00	0.00	43.11	3.86
2839	3906	4.080638	AGGACATCAAGAAGCTAAGGGAAG	60.081	45.833	0.00	0.00	0.00	3.46
2840	3907	3.846588	AGGACATCAAGAAGCTAAGGGAA	59.153	43.478	0.00	0.00	0.00	3.97
2841	3908	3.452627	GAGGACATCAAGAAGCTAAGGGA	59.547	47.826	0.00	0.00	0.00	4.20
2842	3909	3.432890	GGAGGACATCAAGAAGCTAAGGG	60.433	52.174	0.00	0.00	0.00	3.95
2843	3910	3.454082	AGGAGGACATCAAGAAGCTAAGG	59.546	47.826	0.00	0.00	0.00	2.69
2844	3911	4.405358	AGAGGAGGACATCAAGAAGCTAAG	59.595	45.833	0.00	0.00	0.00	2.18
2845	3912	4.161189	CAGAGGAGGACATCAAGAAGCTAA	59.839	45.833	0.00	0.00	0.00	3.09
2846	3913	3.703556	CAGAGGAGGACATCAAGAAGCTA	59.296	47.826	0.00	0.00	0.00	3.32
2847	3914	2.500910	CAGAGGAGGACATCAAGAAGCT	59.499	50.000	0.00	0.00	0.00	3.74
2848	3915	2.235898	ACAGAGGAGGACATCAAGAAGC	59.764	50.000	0.00	0.00	0.00	3.86
2849	3916	3.513119	TCACAGAGGAGGACATCAAGAAG	59.487	47.826	0.00	0.00	0.00	2.85
2850	3917	3.259374	GTCACAGAGGAGGACATCAAGAA	59.741	47.826	0.00	0.00	0.00	2.52
2851	3918	2.828520	GTCACAGAGGAGGACATCAAGA	59.171	50.000	0.00	0.00	0.00	3.02
2852	3919	2.564504	TGTCACAGAGGAGGACATCAAG	59.435	50.000	0.00	0.00	36.69	3.02
2853	3920	2.564504	CTGTCACAGAGGAGGACATCAA	59.435	50.000	0.00	0.00	40.44	2.57
2854	3921	2.174360	CTGTCACAGAGGAGGACATCA	58.826	52.381	0.00	0.00	40.44	3.07
2855	3922	2.451490	TCTGTCACAGAGGAGGACATC	58.549	52.381	2.36	0.00	40.44	3.06
2856	3923	2.612285	TCTGTCACAGAGGAGGACAT	57.388	50.000	2.36	0.00	40.44	3.06
2865	3932	0.252421	ATGGCCTCCTCTGTCACAGA	60.252	55.000	7.44	7.44	38.25	3.41
2866	3933	0.177604	GATGGCCTCCTCTGTCACAG	59.822	60.000	3.32	0.00	0.00	3.66
2867	3934	1.267574	GGATGGCCTCCTCTGTCACA	61.268	60.000	3.32	0.00	41.29	3.58
2868	3935	1.267574	TGGATGGCCTCCTCTGTCAC	61.268	60.000	18.49	0.00	45.21	3.67
2869	3936	1.080907	TGGATGGCCTCCTCTGTCA	59.919	57.895	18.49	0.00	45.21	3.58
2870	3937	1.524482	GTGGATGGCCTCCTCTGTC	59.476	63.158	18.49	1.06	45.21	3.51
2871	3938	1.997874	GGTGGATGGCCTCCTCTGT	60.998	63.158	18.49	0.00	45.21	3.41
2872	3939	2.914289	GGTGGATGGCCTCCTCTG	59.086	66.667	18.49	0.00	45.21	3.35
2873	3940	2.765807	CGGTGGATGGCCTCCTCT	60.766	66.667	18.49	0.00	45.21	3.69
2874	3941	2.764128	TCGGTGGATGGCCTCCTC	60.764	66.667	18.49	15.35	45.21	3.71
2875	3942	3.083997	GTCGGTGGATGGCCTCCT	61.084	66.667	18.49	0.00	45.21	3.69
2876	3943	4.176752	GGTCGGTGGATGGCCTCC	62.177	72.222	3.32	9.38	45.19	4.30
2877	3944	2.670148	AAGGTCGGTGGATGGCCTC	61.670	63.158	3.32	0.00	34.31	4.70
2878	3945	2.610859	AAGGTCGGTGGATGGCCT	60.611	61.111	3.32	0.00	34.31	5.19
2879	3946	2.438434	CAAGGTCGGTGGATGGCC	60.438	66.667	0.00	0.00	0.00	5.36
2880	3947	1.002624	TTCAAGGTCGGTGGATGGC	60.003	57.895	0.00	0.00	0.00	4.40
2881	3948	0.392998	CCTTCAAGGTCGGTGGATGG	60.393	60.000	0.00	0.00	0.00	3.51
2882	3949	3.159298	CCTTCAAGGTCGGTGGATG	57.841	57.895	0.00	0.00	0.00	3.51
2892	3959	2.040278	TGTCTGGATCCAACCTTCAAGG	59.960	50.000	17.00	0.22	42.49	3.61
2893	3960	3.423539	TGTCTGGATCCAACCTTCAAG	57.576	47.619	17.00	1.11	0.00	3.02
2894	3961	3.561960	CCATGTCTGGATCCAACCTTCAA	60.562	47.826	17.00	1.84	46.37	2.69
2895	3962	2.025981	CCATGTCTGGATCCAACCTTCA	60.026	50.000	17.00	10.58	46.37	3.02
2896	3963	2.025887	ACCATGTCTGGATCCAACCTTC	60.026	50.000	17.00	5.27	46.37	3.46
2897	3964	1.995542	ACCATGTCTGGATCCAACCTT	59.004	47.619	17.00	4.50	46.37	3.50
2898	3965	1.673767	ACCATGTCTGGATCCAACCT	58.326	50.000	17.00	7.37	46.37	3.50
2899	3966	2.094675	CAACCATGTCTGGATCCAACC	58.905	52.381	17.00	9.56	46.37	3.77
2900	3967	3.071874	TCAACCATGTCTGGATCCAAC	57.928	47.619	17.00	16.35	46.37	3.77
2901	3968	3.561960	CCTTCAACCATGTCTGGATCCAA	60.562	47.826	17.00	0.60	46.37	3.53
2902	3969	2.025981	CCTTCAACCATGTCTGGATCCA	60.026	50.000	15.27	15.27	46.37	3.41
2903	3970	2.025887	ACCTTCAACCATGTCTGGATCC	60.026	50.000	4.20	4.20	46.37	3.36
2904	3971	3.274288	GACCTTCAACCATGTCTGGATC	58.726	50.000	0.00	0.00	46.37	3.36
2905	3972	2.025887	GGACCTTCAACCATGTCTGGAT	60.026	50.000	0.00	0.00	46.37	3.41
2906	3973	1.351017	GGACCTTCAACCATGTCTGGA	59.649	52.381	0.00	0.00	46.37	3.86
2908	3975	2.566833	TGGACCTTCAACCATGTCTG	57.433	50.000	0.00	0.00	0.00	3.51
2909	3976	3.490348	CTTTGGACCTTCAACCATGTCT	58.510	45.455	0.00	0.00	36.02	3.41
2910	3977	2.029918	GCTTTGGACCTTCAACCATGTC	60.030	50.000	0.00	0.00	36.02	3.06
2911	3978	1.963515	GCTTTGGACCTTCAACCATGT	59.036	47.619	0.00	0.00	36.02	3.21
2912	3979	1.068333	CGCTTTGGACCTTCAACCATG	60.068	52.381	0.00	0.00	36.02	3.66
2913	3980	1.247567	CGCTTTGGACCTTCAACCAT	58.752	50.000	0.00	0.00	36.02	3.55
2914	3981	2.714259	CGCTTTGGACCTTCAACCA	58.286	52.632	0.00	0.00	0.00	3.67

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.