Multiple sequence alignment - TraesCS2A01G492400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G492400 chr2A 100.000 9426 0 0 1 9426 724740948 724731523 0.000000e+00 17407.0
1 TraesCS2A01G492400 chr2B 95.270 4757 151 40 615 5328 715318263 715313538 0.000000e+00 7470.0
2 TraesCS2A01G492400 chr2B 94.884 1857 64 13 5352 7188 715313550 715311705 0.000000e+00 2874.0
3 TraesCS2A01G492400 chr2B 92.166 1468 73 19 7392 8857 715311496 715310069 0.000000e+00 2036.0
4 TraesCS2A01G492400 chr2B 82.778 540 37 34 8906 9426 715310072 715309570 1.880000e-116 431.0
5 TraesCS2A01G492400 chr2B 90.984 122 6 2 460 581 715324619 715324503 9.800000e-35 159.0
6 TraesCS2A01G492400 chr2B 97.674 86 2 0 7305 7390 762514879 762514794 2.120000e-31 148.0
7 TraesCS2A01G492400 chr2D 97.395 2188 36 6 5126 7307 590334945 590332773 0.000000e+00 3705.0
8 TraesCS2A01G492400 chr2D 96.522 1840 41 11 3307 5129 590336870 590335037 0.000000e+00 3022.0
9 TraesCS2A01G492400 chr2D 93.758 1666 72 17 1549 3204 590338524 590336881 0.000000e+00 2471.0
10 TraesCS2A01G492400 chr2D 95.666 1223 44 6 7389 8607 590332774 590331557 0.000000e+00 1956.0
11 TraesCS2A01G492400 chr2D 90.640 641 22 7 570 1184 590339761 590339133 0.000000e+00 817.0
12 TraesCS2A01G492400 chr2D 87.862 552 36 14 8881 9426 590331265 590330739 3.740000e-173 619.0
13 TraesCS2A01G492400 chr2D 85.993 564 46 24 5 555 590345164 590344621 2.950000e-159 573.0
14 TraesCS2A01G492400 chr2D 81.941 443 56 18 7 436 590340686 590340255 4.190000e-93 353.0
15 TraesCS2A01G492400 chr2D 94.118 119 4 3 460 578 590340289 590340174 2.700000e-40 178.0
16 TraesCS2A01G492400 chr2D 95.402 87 4 0 7305 7391 564440696 564440782 1.280000e-28 139.0
17 TraesCS2A01G492400 chr2D 91.176 102 7 2 7305 7405 436111338 436111438 4.590000e-28 137.0
18 TraesCS2A01G492400 chrUn 76.169 877 144 43 5152 5996 3700409 3699566 1.470000e-107 401.0
19 TraesCS2A01G492400 chrUn 75.404 557 98 30 2483 3022 3832505 3831971 5.690000e-57 233.0
20 TraesCS2A01G492400 chr1A 75.694 864 151 36 5160 5996 53853254 53854085 2.480000e-100 377.0
21 TraesCS2A01G492400 chr1A 75.758 462 86 11 5113 5569 53868759 53869199 9.590000e-50 209.0
22 TraesCS2A01G492400 chr1A 78.829 222 44 3 2511 2730 53850596 53850816 7.630000e-31 147.0
23 TraesCS2A01G492400 chr1D 75.679 847 147 31 5113 5933 54907815 54908628 1.500000e-97 368.0
24 TraesCS2A01G492400 chr1B 78.448 348 52 9 5366 5698 90436138 90435799 1.240000e-48 206.0
25 TraesCS2A01G492400 chr6B 94.000 100 6 0 7292 7391 180572299 180572398 1.640000e-32 152.0
26 TraesCS2A01G492400 chr5B 94.000 100 6 0 7292 7391 145670776 145670875 1.640000e-32 152.0
27 TraesCS2A01G492400 chr5B 92.000 100 8 0 7292 7391 547451185 547451086 3.550000e-29 141.0
28 TraesCS2A01G492400 chr3B 94.000 100 6 0 7292 7391 138269205 138269304 1.640000e-32 152.0
29 TraesCS2A01G492400 chr3B 96.591 88 3 0 7305 7392 752120275 752120188 7.630000e-31 147.0
30 TraesCS2A01G492400 chr4B 89.474 114 10 2 7290 7401 342857176 342857063 9.870000e-30 143.0
31 TraesCS2A01G492400 chr6A 82.727 110 11 7 3558 3664 592694186 592694082 3.620000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G492400 chr2A 724731523 724740948 9425 True 17407.000000 17407 100.000000 1 9426 1 chr2A.!!$R1 9425
1 TraesCS2A01G492400 chr2B 715309570 715318263 8693 True 3202.750000 7470 91.274500 615 9426 4 chr2B.!!$R3 8811
2 TraesCS2A01G492400 chr2D 590330739 590345164 14425 True 1521.555556 3705 91.543889 5 9426 9 chr2D.!!$R1 9421
3 TraesCS2A01G492400 chrUn 3699566 3700409 843 True 401.000000 401 76.169000 5152 5996 1 chrUn.!!$R1 844
4 TraesCS2A01G492400 chrUn 3831971 3832505 534 True 233.000000 233 75.404000 2483 3022 1 chrUn.!!$R2 539
5 TraesCS2A01G492400 chr1A 53850596 53854085 3489 False 262.000000 377 77.261500 2511 5996 2 chr1A.!!$F2 3485
6 TraesCS2A01G492400 chr1D 54907815 54908628 813 False 368.000000 368 75.679000 5113 5933 1 chr1D.!!$F1 820

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 305 0.169009 GTGGGACAAGCGCAATCTTC 59.831 55.000 11.47 0.00 44.16 2.87 F
772 5622 0.321653 GCTCTCCCACAAACCACGAT 60.322 55.000 0.00 0.00 0.00 3.73 F
918 5780 0.676782 GGCTGCGGCGGGATAAATAT 60.677 55.000 12.29 0.00 39.81 1.28 F
1999 7155 0.036010 CGTTGCTCCCTGATTCCACT 60.036 55.000 0.00 0.00 0.00 4.00 F
2034 7190 0.318699 CGACTCTTCGTTGACAGCCA 60.319 55.000 0.00 0.00 40.61 4.75 F
3023 8187 2.496070 GGTTCCCTAAAGAATGGTTGGC 59.504 50.000 0.00 0.00 0.00 4.52 F
3933 9368 0.252197 ACACTAATCCCCGCACCTTC 59.748 55.000 0.00 0.00 0.00 3.46 F
4658 10164 1.002544 GAACCTAGCCTTCTGCACACT 59.997 52.381 0.00 0.00 44.83 3.55 F
4858 10366 1.072489 TCCTGTTTTGTGGGCGTATGA 59.928 47.619 0.00 0.00 0.00 2.15 F
5993 11779 2.242926 TCAGTGAGCAGCTGTACTTCT 58.757 47.619 16.64 2.63 35.60 2.85 F
6671 12470 0.834612 TAGGGGCAGACCATAAACGG 59.165 55.000 0.00 0.00 42.91 4.44 F
7801 13701 0.179163 GCCGACTGCCAAAATACTGC 60.179 55.000 0.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1341 6227 0.104462 CCCATCCATCCCCCACTCTA 60.104 60.000 0.00 0.00 0.00 2.43 R
1985 7134 0.107312 CAGGCAGTGGAATCAGGGAG 60.107 60.000 0.00 0.00 0.00 4.30 R
2632 7794 0.620556 TGCCCCTTCTGCTAGAAAGG 59.379 55.000 10.51 10.51 35.94 3.11 R
3107 8287 0.108585 TCTCCAAGCAGACACAACCC 59.891 55.000 0.00 0.00 0.00 4.11 R
3110 8290 1.881973 GCATTCTCCAAGCAGACACAA 59.118 47.619 0.00 0.00 0.00 3.33 R
4400 9838 2.068519 TGTGCGTCACAGAAAGCTATG 58.931 47.619 8.32 0.00 39.62 2.23 R
4964 10472 2.098117 GCACATGGGAAACTAGATGCAC 59.902 50.000 0.00 0.00 36.16 4.57 R
6101 11898 0.394899 GCTCAACTAAGGGGCTGCAT 60.395 55.000 0.50 0.00 0.00 3.96 R
6387 12185 1.314534 TGCTGATGCCCAATGGTTCG 61.315 55.000 0.00 0.00 38.71 3.95 R
7784 13684 1.135689 GGTGCAGTATTTTGGCAGTCG 60.136 52.381 0.00 0.00 38.38 4.18 R
8296 14197 1.135141 GCAGGCAGTCAGAGAGTACTG 60.135 57.143 0.00 0.00 44.79 2.74 R
9300 15293 0.033504 ACGCACGTTGAGGACTTGAT 59.966 50.000 0.00 0.00 29.42 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.683011 CCCATGTTGTGTCCCATCTCC 60.683 57.143 0.00 0.00 0.00 3.71
22 23 1.066215 CATGTTGTGTCCCATCTCCGA 60.066 52.381 0.00 0.00 0.00 4.55
39 40 1.001924 CCGATGAGAGATGGTCGTCAG 60.002 57.143 0.00 0.00 31.30 3.51
44 45 1.611491 GAGAGATGGTCGTCAGGGATC 59.389 57.143 0.00 0.00 0.00 3.36
47 48 0.390860 GATGGTCGTCAGGGATCAGG 59.609 60.000 0.00 0.00 29.02 3.86
49 50 2.501610 GTCGTCAGGGATCAGGGC 59.498 66.667 0.00 0.00 0.00 5.19
50 51 2.060980 GTCGTCAGGGATCAGGGCT 61.061 63.158 0.00 0.00 0.00 5.19
51 52 2.060383 TCGTCAGGGATCAGGGCTG 61.060 63.158 0.00 0.00 0.00 4.85
52 53 2.191641 GTCAGGGATCAGGGCTGC 59.808 66.667 0.00 0.00 0.00 5.25
82 84 0.804989 GTTGGCCATCGGTGAGAAAG 59.195 55.000 6.09 0.00 0.00 2.62
83 85 0.322456 TTGGCCATCGGTGAGAAAGG 60.322 55.000 6.09 0.00 0.00 3.11
90 92 3.370953 CCATCGGTGAGAAAGGAAGGAAT 60.371 47.826 0.00 0.00 31.91 3.01
99 101 2.059756 AAGGAAGGAATGGGTGGAGA 57.940 50.000 0.00 0.00 0.00 3.71
100 102 2.059756 AGGAAGGAATGGGTGGAGAA 57.940 50.000 0.00 0.00 0.00 2.87
104 106 3.348119 GAAGGAATGGGTGGAGAAAGAC 58.652 50.000 0.00 0.00 0.00 3.01
107 109 2.844348 GGAATGGGTGGAGAAAGACCTA 59.156 50.000 0.00 0.00 32.33 3.08
111 113 1.273666 GGGTGGAGAAAGACCTAGGGA 60.274 57.143 14.81 0.00 32.33 4.20
112 114 2.547990 GGTGGAGAAAGACCTAGGGAA 58.452 52.381 14.81 0.00 0.00 3.97
113 115 2.502130 GGTGGAGAAAGACCTAGGGAAG 59.498 54.545 14.81 0.00 0.00 3.46
122 124 1.082206 CCTAGGGAAGGGGGTGTGA 59.918 63.158 0.00 0.00 42.32 3.58
124 126 0.983378 CTAGGGAAGGGGGTGTGAGG 60.983 65.000 0.00 0.00 0.00 3.86
125 127 2.486410 TAGGGAAGGGGGTGTGAGGG 62.486 65.000 0.00 0.00 0.00 4.30
126 128 2.531942 GGAAGGGGGTGTGAGGGT 60.532 66.667 0.00 0.00 0.00 4.34
127 129 2.603652 GGAAGGGGGTGTGAGGGTC 61.604 68.421 0.00 0.00 0.00 4.46
128 130 2.928396 AAGGGGGTGTGAGGGTCG 60.928 66.667 0.00 0.00 0.00 4.79
175 178 3.445518 GATCGATGCTGCCGGGACA 62.446 63.158 0.54 1.56 0.00 4.02
188 191 2.270527 GGACAGGGGAAGCTGAGC 59.729 66.667 0.00 0.00 0.00 4.26
202 205 3.513438 GAGCTGCGCTCGAGGAGA 61.513 66.667 15.58 0.00 45.85 3.71
205 208 1.738099 GCTGCGCTCGAGGAGAAAA 60.738 57.895 15.58 0.00 0.00 2.29
227 230 7.966246 AAAAAGAAATGTGCAATGCTGATAA 57.034 28.000 6.82 0.00 0.00 1.75
228 231 8.556213 AAAAAGAAATGTGCAATGCTGATAAT 57.444 26.923 6.82 0.00 0.00 1.28
231 234 6.869695 AGAAATGTGCAATGCTGATAATGAA 58.130 32.000 6.82 0.00 0.00 2.57
235 238 2.960384 TGCAATGCTGATAATGAAGGGG 59.040 45.455 6.82 0.00 0.00 4.79
236 239 2.961062 GCAATGCTGATAATGAAGGGGT 59.039 45.455 0.00 0.00 0.00 4.95
285 288 1.291184 TTGATCGTGAGGCTTGCGTG 61.291 55.000 10.53 0.00 0.00 5.34
286 289 2.434884 ATCGTGAGGCTTGCGTGG 60.435 61.111 10.53 0.00 0.00 4.94
287 290 3.958147 ATCGTGAGGCTTGCGTGGG 62.958 63.158 10.53 0.00 0.00 4.61
288 291 4.680237 CGTGAGGCTTGCGTGGGA 62.680 66.667 0.00 0.00 0.00 4.37
289 292 3.050275 GTGAGGCTTGCGTGGGAC 61.050 66.667 0.00 0.00 0.00 4.46
290 293 3.555324 TGAGGCTTGCGTGGGACA 61.555 61.111 0.00 0.00 0.00 4.02
291 294 2.281484 GAGGCTTGCGTGGGACAA 60.281 61.111 0.00 0.00 44.16 3.18
302 305 0.169009 GTGGGACAAGCGCAATCTTC 59.831 55.000 11.47 0.00 44.16 2.87
304 307 0.678048 GGGACAAGCGCAATCTTCCT 60.678 55.000 11.47 0.00 0.00 3.36
319 322 1.475280 CTTCCTTCGGTCGGTCATACA 59.525 52.381 0.00 0.00 0.00 2.29
321 324 0.528924 CCTTCGGTCGGTCATACACA 59.471 55.000 0.00 0.00 0.00 3.72
420 423 8.812972 TCAACAAAGTAGACATGATACCTAGTT 58.187 33.333 0.00 4.58 0.00 2.24
423 426 8.251721 ACAAAGTAGACATGATACCTAGTTGTC 58.748 37.037 0.00 0.00 37.54 3.18
424 427 7.956328 AAGTAGACATGATACCTAGTTGTCA 57.044 36.000 0.00 0.00 39.27 3.58
425 428 7.575414 AGTAGACATGATACCTAGTTGTCAG 57.425 40.000 0.00 0.00 39.27 3.51
426 429 7.347252 AGTAGACATGATACCTAGTTGTCAGA 58.653 38.462 0.00 0.00 39.27 3.27
498 503 8.213679 TCCTCTTCTCTCAAAGAAAAAGAATGA 58.786 33.333 0.00 0.00 43.39 2.57
546 4976 5.309543 TCCCACAAGAAAGAAATCTAGGACA 59.690 40.000 0.00 0.00 0.00 4.02
566 4996 5.134202 ACAATCAGAAAATTTCGGAACCC 57.866 39.130 12.14 0.00 37.42 4.11
567 4997 4.586841 ACAATCAGAAAATTTCGGAACCCA 59.413 37.500 12.14 0.00 37.42 4.51
568 4998 5.245977 ACAATCAGAAAATTTCGGAACCCAT 59.754 36.000 12.14 0.00 37.42 4.00
762 5612 3.733443 AAAACACAAATGCTCTCCCAC 57.267 42.857 0.00 0.00 0.00 4.61
772 5622 0.321653 GCTCTCCCACAAACCACGAT 60.322 55.000 0.00 0.00 0.00 3.73
862 5712 2.550606 GCACACAAAAACCTCCACGATA 59.449 45.455 0.00 0.00 0.00 2.92
869 5719 5.875359 ACAAAAACCTCCACGATATTCTCTC 59.125 40.000 0.00 0.00 0.00 3.20
872 5722 3.904717 ACCTCCACGATATTCTCTCACT 58.095 45.455 0.00 0.00 0.00 3.41
877 5727 1.689273 ACGATATTCTCTCACTGGCCC 59.311 52.381 0.00 0.00 0.00 5.80
918 5780 0.676782 GGCTGCGGCGGGATAAATAT 60.677 55.000 12.29 0.00 39.81 1.28
919 5781 0.727398 GCTGCGGCGGGATAAATATC 59.273 55.000 9.78 0.00 0.00 1.63
920 5782 1.676014 GCTGCGGCGGGATAAATATCT 60.676 52.381 9.78 0.00 33.28 1.98
921 5783 2.418197 GCTGCGGCGGGATAAATATCTA 60.418 50.000 9.78 0.00 33.28 1.98
945 5807 1.758783 GCCGCAGAAAAGTGTTTCAG 58.241 50.000 2.35 0.00 44.82 3.02
950 5812 3.608456 GCAGAAAAGTGTTTCAGTCGAC 58.392 45.455 7.70 7.70 44.82 4.20
1174 6059 2.433491 TTCGACGCCATCAACCGG 60.433 61.111 0.00 0.00 0.00 5.28
1296 6182 4.798682 TCGCCCCTTCCTCCCTCC 62.799 72.222 0.00 0.00 0.00 4.30
1298 6184 4.439901 GCCCCTTCCTCCCTCCCT 62.440 72.222 0.00 0.00 0.00 4.20
1299 6185 2.040359 CCCCTTCCTCCCTCCCTC 60.040 72.222 0.00 0.00 0.00 4.30
1304 6190 1.866997 TTCCTCCCTCCCTCCCTCA 60.867 63.158 0.00 0.00 0.00 3.86
1314 6200 3.775654 CTCCCTCACTCCCCGCAC 61.776 72.222 0.00 0.00 0.00 5.34
1343 6229 4.322101 CGATTCCGTGGTTTGTTTCTAG 57.678 45.455 0.00 0.00 0.00 2.43
1344 6230 3.991773 CGATTCCGTGGTTTGTTTCTAGA 59.008 43.478 0.00 0.00 0.00 2.43
1345 6231 4.091509 CGATTCCGTGGTTTGTTTCTAGAG 59.908 45.833 0.00 0.00 0.00 2.43
1346 6232 4.411256 TTCCGTGGTTTGTTTCTAGAGT 57.589 40.909 0.00 0.00 0.00 3.24
1436 6537 3.194116 TGCGAAACGAGGGAAGTAGTTAT 59.806 43.478 0.00 0.00 0.00 1.89
1467 6568 6.894682 AGGAGAATAAAAGAGATGAGGGAAC 58.105 40.000 0.00 0.00 0.00 3.62
1499 6602 5.535030 TGTCTCTAGTTCTGCTAGTTTCACA 59.465 40.000 0.00 0.00 45.65 3.58
1525 6628 2.334023 GGGTGCTCTGGAGGAGATTAT 58.666 52.381 0.00 0.00 44.45 1.28
1614 6755 7.013834 TCCCTGTACCATGATGTGTGTATATA 58.986 38.462 0.00 0.00 0.00 0.86
1615 6756 7.678171 TCCCTGTACCATGATGTGTGTATATAT 59.322 37.037 0.00 0.00 0.00 0.86
1616 6757 8.321353 CCCTGTACCATGATGTGTGTATATATT 58.679 37.037 0.00 0.00 0.00 1.28
1685 6827 1.736282 CGGTACATGCGCACTGACA 60.736 57.895 14.90 3.74 0.00 3.58
1693 6835 2.941333 CGCACTGACACAGGCTTG 59.059 61.111 0.00 0.00 35.51 4.01
1719 6861 2.094026 TGTCAGCTATTGCGTCATCAGT 60.094 45.455 0.00 0.00 45.42 3.41
1735 6877 4.439472 GTTAACGGCAGCGTGCGG 62.439 66.667 13.22 13.22 46.21 5.69
1753 6895 1.255342 CGGTAACATCACGCAAGATCG 59.745 52.381 0.00 0.00 43.62 3.69
1759 6901 2.262211 CATCACGCAAGATCGAACAGA 58.738 47.619 0.00 0.00 43.62 3.41
1848 6996 2.672381 CGCAAACCTTAATGGCATTTGG 59.328 45.455 19.21 21.10 40.22 3.28
1867 7016 2.173356 TGGGATCTTAGAACATGCCTGG 59.827 50.000 0.00 0.00 31.85 4.45
1873 7022 1.667236 TAGAACATGCCTGGATTGCG 58.333 50.000 0.00 0.00 0.00 4.85
1876 7025 2.103538 CATGCCTGGATTGCGTGC 59.896 61.111 0.00 0.00 38.74 5.34
1907 7056 5.904362 AATAACTCACCTGCCTGAATTTC 57.096 39.130 0.00 0.00 0.00 2.17
1933 7082 4.466726 AGGTTGTCTCTGTCTGTATAACCC 59.533 45.833 0.00 0.00 37.60 4.11
1937 7086 3.773119 GTCTCTGTCTGTATAACCCCCAA 59.227 47.826 0.00 0.00 0.00 4.12
1983 7132 1.811266 CTGCTATCTGCCACGCGTT 60.811 57.895 10.22 0.00 42.00 4.84
1985 7134 2.703409 CTATCTGCCACGCGTTGC 59.297 61.111 26.71 26.71 0.00 4.17
1999 7155 0.036010 CGTTGCTCCCTGATTCCACT 60.036 55.000 0.00 0.00 0.00 4.00
2010 7166 1.941999 GATTCCACTGCCTGGCAAGC 61.942 60.000 23.51 6.30 40.39 4.01
2011 7167 2.436596 ATTCCACTGCCTGGCAAGCT 62.437 55.000 23.51 5.06 40.39 3.74
2012 7168 3.060615 CCACTGCCTGGCAAGCTC 61.061 66.667 23.51 0.00 38.41 4.09
2013 7169 2.033757 CACTGCCTGGCAAGCTCT 59.966 61.111 23.51 0.00 38.41 4.09
2014 7170 1.602888 CACTGCCTGGCAAGCTCTT 60.603 57.895 23.51 0.00 38.41 2.85
2015 7171 1.303155 ACTGCCTGGCAAGCTCTTC 60.303 57.895 23.51 0.00 38.41 2.87
2016 7172 2.359107 TGCCTGGCAAGCTCTTCG 60.359 61.111 21.08 0.00 34.76 3.79
2017 7173 2.046892 GCCTGGCAAGCTCTTCGA 60.047 61.111 15.17 0.00 0.00 3.71
2034 7190 0.318699 CGACTCTTCGTTGACAGCCA 60.319 55.000 0.00 0.00 40.61 4.75
2221 7377 3.420839 CAAGCTTTTCTTGGTTGTCGT 57.579 42.857 0.00 0.00 46.50 4.34
2274 7430 3.000041 GTCGTGATATCAAACAGCCACA 59.000 45.455 7.07 0.00 0.00 4.17
2359 7515 3.535962 GCGAGGGAGAGAGGCAGG 61.536 72.222 0.00 0.00 0.00 4.85
2630 7792 5.869344 TGTTTGATGTGATACTCAGCACTAC 59.131 40.000 0.00 0.00 41.73 2.73
2632 7794 5.506686 TGATGTGATACTCAGCACTACTC 57.493 43.478 0.00 0.00 41.73 2.59
2746 7908 6.717289 TGTGTGCAATACCTATTTCCTTACT 58.283 36.000 0.00 0.00 0.00 2.24
2837 8001 5.909621 AGTCTAGTTGCAACGGTTATAGA 57.090 39.130 23.21 19.68 0.00 1.98
3023 8187 2.496070 GGTTCCCTAAAGAATGGTTGGC 59.504 50.000 0.00 0.00 0.00 4.52
3064 8228 4.520111 GTGGTTGATATGGCATCAGCATTA 59.480 41.667 1.65 0.00 44.61 1.90
3110 8290 4.668138 TCTTTACTTGGGCAATTAGGGT 57.332 40.909 0.00 0.00 0.00 4.34
3525 8958 6.546484 TCTTGATCTCCTTCCAATTGAGTTT 58.454 36.000 7.12 0.00 0.00 2.66
3566 9001 3.968724 GCGAGTGATGTTTGTCAGTTTTC 59.031 43.478 0.00 0.00 32.08 2.29
3677 9112 6.837471 TTATTGCTACCCCGTAAAACAAAT 57.163 33.333 0.00 0.00 0.00 2.32
3933 9368 0.252197 ACACTAATCCCCGCACCTTC 59.748 55.000 0.00 0.00 0.00 3.46
4006 9442 7.376866 CACGTATGTTCTTTATCCATCATTTGC 59.623 37.037 0.00 0.00 0.00 3.68
4658 10164 1.002544 GAACCTAGCCTTCTGCACACT 59.997 52.381 0.00 0.00 44.83 3.55
4858 10366 1.072489 TCCTGTTTTGTGGGCGTATGA 59.928 47.619 0.00 0.00 0.00 2.15
4964 10472 6.427150 GGTTTAGGTGCATTATAATGTGACG 58.573 40.000 23.14 1.90 38.65 4.35
5281 11033 6.294010 GGATTTGAGGTTCCTTACAAACTGTC 60.294 42.308 7.54 3.67 35.58 3.51
5290 11042 8.357402 GGTTCCTTACAAACTGTCAATAATTGT 58.643 33.333 0.00 0.00 37.86 2.71
5291 11043 9.180678 GTTCCTTACAAACTGTCAATAATTGTG 57.819 33.333 4.10 0.00 35.89 3.33
5993 11779 2.242926 TCAGTGAGCAGCTGTACTTCT 58.757 47.619 16.64 2.63 35.60 2.85
6101 11898 3.168035 TCCAGGCATTTCTTTTAGGCA 57.832 42.857 0.00 0.00 0.00 4.75
6141 11938 6.856426 TGAGCTCTGTTCGATAATATACAACG 59.144 38.462 16.19 0.00 0.00 4.10
6287 12085 6.575244 ATCCATTAACATAACACTCCCTCA 57.425 37.500 0.00 0.00 0.00 3.86
6387 12185 4.237724 GCAATTTTAGTTTCTCTGTGGCC 58.762 43.478 0.00 0.00 0.00 5.36
6605 12403 2.095516 GCAGCACCTCTAGCAAAAAGTC 60.096 50.000 0.00 0.00 0.00 3.01
6671 12470 0.834612 TAGGGGCAGACCATAAACGG 59.165 55.000 0.00 0.00 42.91 4.44
6685 12484 4.398044 CCATAAACGGCCACATTACTTCTT 59.602 41.667 2.24 0.00 0.00 2.52
6801 12606 2.507407 TGCCCCTTATGTCTGTTTCC 57.493 50.000 0.00 0.00 0.00 3.13
6920 12731 6.165577 ACATGTTTTGTTTTTGTCTCAGCTT 58.834 32.000 0.00 0.00 33.74 3.74
7163 12974 7.360575 TCAAAAACTTATTCTCGGCTTAGTC 57.639 36.000 0.00 0.00 0.00 2.59
7210 13109 8.694540 TGTTATCTTGCAATGCTTTTATACCAT 58.305 29.630 6.82 0.00 0.00 3.55
7305 13204 3.721793 GCAGCAGCTCTTGGGATAT 57.278 52.632 0.00 0.00 37.91 1.63
7306 13205 2.847327 GCAGCAGCTCTTGGGATATA 57.153 50.000 0.00 0.00 37.91 0.86
7307 13206 2.421619 GCAGCAGCTCTTGGGATATAC 58.578 52.381 0.00 0.00 37.91 1.47
7308 13207 2.038295 GCAGCAGCTCTTGGGATATACT 59.962 50.000 0.00 0.00 37.91 2.12
7309 13208 3.864160 GCAGCAGCTCTTGGGATATACTC 60.864 52.174 0.00 0.00 37.91 2.59
7310 13209 2.903135 AGCAGCTCTTGGGATATACTCC 59.097 50.000 0.00 0.00 44.11 3.85
7319 13218 2.903375 GGATATACTCCCTCCGTCCT 57.097 55.000 0.00 0.00 38.19 3.85
7320 13219 2.448453 GGATATACTCCCTCCGTCCTG 58.552 57.143 0.00 0.00 38.19 3.86
7321 13220 2.225066 GGATATACTCCCTCCGTCCTGT 60.225 54.545 0.00 0.00 38.19 4.00
7322 13221 3.009916 GGATATACTCCCTCCGTCCTGTA 59.990 52.174 0.00 0.00 38.19 2.74
7323 13222 4.508047 GGATATACTCCCTCCGTCCTGTAA 60.508 50.000 0.00 0.00 38.19 2.41
7324 13223 3.614568 ATACTCCCTCCGTCCTGTAAT 57.385 47.619 0.00 0.00 0.00 1.89
7325 13224 4.736611 ATACTCCCTCCGTCCTGTAATA 57.263 45.455 0.00 0.00 0.00 0.98
7326 13225 3.614568 ACTCCCTCCGTCCTGTAATAT 57.385 47.619 0.00 0.00 0.00 1.28
7327 13226 4.736611 ACTCCCTCCGTCCTGTAATATA 57.263 45.455 0.00 0.00 0.00 0.86
7328 13227 5.070823 ACTCCCTCCGTCCTGTAATATAA 57.929 43.478 0.00 0.00 0.00 0.98
7329 13228 5.078256 ACTCCCTCCGTCCTGTAATATAAG 58.922 45.833 0.00 0.00 0.00 1.73
7330 13229 5.163012 ACTCCCTCCGTCCTGTAATATAAGA 60.163 44.000 0.00 0.00 0.00 2.10
7331 13230 5.708544 TCCCTCCGTCCTGTAATATAAGAA 58.291 41.667 0.00 0.00 0.00 2.52
7332 13231 6.320518 TCCCTCCGTCCTGTAATATAAGAAT 58.679 40.000 0.00 0.00 0.00 2.40
7333 13232 6.210784 TCCCTCCGTCCTGTAATATAAGAATG 59.789 42.308 0.00 0.00 0.00 2.67
7334 13233 6.014499 CCCTCCGTCCTGTAATATAAGAATGT 60.014 42.308 0.00 0.00 0.00 2.71
7335 13234 7.442656 CCTCCGTCCTGTAATATAAGAATGTT 58.557 38.462 0.00 0.00 0.00 2.71
7336 13235 7.931948 CCTCCGTCCTGTAATATAAGAATGTTT 59.068 37.037 0.00 0.00 0.00 2.83
7337 13236 9.326413 CTCCGTCCTGTAATATAAGAATGTTTT 57.674 33.333 0.00 0.00 0.00 2.43
7338 13237 9.675464 TCCGTCCTGTAATATAAGAATGTTTTT 57.325 29.630 0.00 0.00 0.00 1.94
7339 13238 9.716507 CCGTCCTGTAATATAAGAATGTTTTTG 57.283 33.333 0.00 0.00 0.00 2.44
7352 13251 8.732746 AAGAATGTTTTTGACACTACACTAGT 57.267 30.769 0.00 0.00 42.04 2.57
7365 13264 6.579491 ACTACACTAGTGTCAAAAACGTTC 57.421 37.500 31.11 0.00 43.74 3.95
7366 13265 6.335777 ACTACACTAGTGTCAAAAACGTTCT 58.664 36.000 31.11 5.44 43.74 3.01
7367 13266 6.815142 ACTACACTAGTGTCAAAAACGTTCTT 59.185 34.615 31.11 4.99 43.74 2.52
7368 13267 7.975616 ACTACACTAGTGTCAAAAACGTTCTTA 59.024 33.333 31.11 8.36 43.74 2.10
7369 13268 7.781548 ACACTAGTGTCAAAAACGTTCTTAT 57.218 32.000 22.95 0.00 40.24 1.73
7370 13269 8.876275 ACACTAGTGTCAAAAACGTTCTTATA 57.124 30.769 22.95 0.00 40.24 0.98
7371 13270 9.485206 ACACTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 22.95 0.00 40.24 0.86
7377 13276 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
7378 13277 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
7379 13278 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
7481 13380 3.550030 CCTTTTCTAGCAACGTTTGGGTG 60.550 47.826 0.00 0.00 0.00 4.61
7494 13393 4.830600 ACGTTTGGGTGGTTCATTAGATTT 59.169 37.500 0.00 0.00 0.00 2.17
7530 13429 3.057315 GCACAAATGCCATGTTAGTCAGT 60.057 43.478 0.00 0.00 46.97 3.41
7664 13563 3.385755 GGTTCTTGATTATGCTGGCCAAT 59.614 43.478 7.01 0.00 0.00 3.16
7665 13564 4.584325 GGTTCTTGATTATGCTGGCCAATA 59.416 41.667 7.01 0.00 0.00 1.90
7666 13565 5.507985 GGTTCTTGATTATGCTGGCCAATAC 60.508 44.000 7.01 0.00 0.00 1.89
7784 13684 4.244862 CTGGTTTATGTTGGAATTGTGCC 58.755 43.478 0.00 0.00 0.00 5.01
7801 13701 0.179163 GCCGACTGCCAAAATACTGC 60.179 55.000 0.00 0.00 0.00 4.40
8017 13917 3.953766 TGATAGCGAAGACGATGAGAAC 58.046 45.455 0.00 0.00 42.66 3.01
8113 14013 2.005960 CTACCCCAGAGCCGAAGTCG 62.006 65.000 0.00 0.00 39.44 4.18
8119 14019 2.182030 GAGCCGAAGTCGTCTGGG 59.818 66.667 0.00 0.00 37.74 4.45
8185 14085 2.359967 GGGACGAGGTGGGAAGAGG 61.360 68.421 0.00 0.00 0.00 3.69
8209 14109 3.003763 GGCAGACCCCGGAAGTCT 61.004 66.667 18.32 18.32 45.45 3.24
8215 14115 0.822811 GACCCCGGAAGTCTTAGACC 59.177 60.000 0.73 0.00 32.18 3.85
8216 14116 0.412640 ACCCCGGAAGTCTTAGACCT 59.587 55.000 0.73 0.00 32.18 3.85
8220 14120 2.025898 CCGGAAGTCTTAGACCTCTCC 58.974 57.143 8.96 11.38 32.18 3.71
8235 14135 2.671619 TCCGGCGAGCCTTTTTGG 60.672 61.111 9.30 5.64 39.35 3.28
8269 14170 6.294564 GGTCAAGCGATATCTAACACCTGATA 60.295 42.308 0.34 0.00 0.00 2.15
8286 14187 2.027837 TGATATGATGTGATCCAGCCCG 60.028 50.000 0.00 0.00 0.00 6.13
8300 14201 2.897207 CCCGGCCATTCGACAGTA 59.103 61.111 2.24 0.00 0.00 2.74
8375 14276 5.643348 TGTGATTGTGAGCCTGTAATGTTAG 59.357 40.000 0.00 0.00 0.00 2.34
8405 14306 5.732247 GCAACCGTATTATTCATTGGTGACC 60.732 44.000 0.00 0.00 33.11 4.02
8415 14316 2.038426 TCATTGGTGACCGTGAGTGAAT 59.962 45.455 5.54 0.00 0.00 2.57
8446 14347 0.179100 ATCGTGTGGAATCCGCTCTG 60.179 55.000 14.50 7.28 34.70 3.35
8448 14349 1.078848 GTGTGGAATCCGCTCTGCT 60.079 57.895 14.50 0.00 34.70 4.24
8449 14350 0.674895 GTGTGGAATCCGCTCTGCTT 60.675 55.000 14.50 0.00 34.70 3.91
8450 14351 0.674581 TGTGGAATCCGCTCTGCTTG 60.675 55.000 14.50 0.00 34.70 4.01
8609 14512 1.645402 GGGCTGGAATGGGCCTAGAA 61.645 60.000 4.53 0.00 46.80 2.10
8640 14576 3.755112 TCACCCAGTACATCGAAACAA 57.245 42.857 0.00 0.00 0.00 2.83
8658 14594 2.742372 CGACCAGTTTGGCTCCGG 60.742 66.667 0.00 0.00 42.67 5.14
8734 14678 2.047274 TGTAGTTCGCAGGCCAGC 60.047 61.111 10.68 10.68 0.00 4.85
8753 14697 3.300853 CAGCGTACGTACATGTTCTTCAG 59.699 47.826 24.50 6.10 0.00 3.02
8761 14705 4.620567 CGTACATGTTCTTCAGATCCACCA 60.621 45.833 2.30 0.00 0.00 4.17
8764 14709 4.202503 ACATGTTCTTCAGATCCACCAGTT 60.203 41.667 0.00 0.00 0.00 3.16
8773 14718 8.642432 TCTTCAGATCCACCAGTTATATACTTG 58.358 37.037 0.00 0.00 33.85 3.16
8790 14735 3.527533 ACTTGCACGTTCACAAGAGTTA 58.472 40.909 22.73 0.00 44.89 2.24
8823 14768 3.924922 ACTACTCCTGGTATAAGGGTGG 58.075 50.000 0.00 0.00 37.96 4.61
8826 14771 1.843851 CTCCTGGTATAAGGGTGGCAA 59.156 52.381 0.00 0.00 37.96 4.52
8841 14786 1.032014 GGCAATACGCATCCAATGGT 58.968 50.000 0.00 0.00 45.17 3.55
8842 14787 2.226330 GGCAATACGCATCCAATGGTA 58.774 47.619 0.00 0.00 45.17 3.25
8843 14788 2.031157 GGCAATACGCATCCAATGGTAC 60.031 50.000 0.00 0.00 45.17 3.34
8871 14816 7.674772 ACAAGAATAGTTTACTGGTACCTCTCT 59.325 37.037 14.36 5.78 0.00 3.10
8873 14818 7.645002 AGAATAGTTTACTGGTACCTCTCTCT 58.355 38.462 14.36 7.29 0.00 3.10
8875 14820 8.750515 AATAGTTTACTGGTACCTCTCTCTAC 57.249 38.462 14.36 3.08 0.00 2.59
8876 14821 5.508567 AGTTTACTGGTACCTCTCTCTACC 58.491 45.833 14.36 0.00 34.08 3.18
8878 14823 3.937778 ACTGGTACCTCTCTCTACCTC 57.062 52.381 14.36 0.00 34.52 3.85
8879 14824 2.510800 ACTGGTACCTCTCTCTACCTCC 59.489 54.545 14.36 0.00 34.52 4.30
8883 14849 3.700539 GGTACCTCTCTCTACCTCCAAAC 59.299 52.174 4.06 0.00 31.20 2.93
8908 14874 6.299141 TGAATTGCCCCTGATAAATAGAGTC 58.701 40.000 0.00 0.00 0.00 3.36
8917 14887 7.257003 CCCTGATAAATAGAGTCGATGAGATG 58.743 42.308 0.00 0.00 0.00 2.90
8934 14904 0.395311 ATGAGGCAGTTGGGAGCATG 60.395 55.000 0.00 0.00 0.00 4.06
8949 14919 0.301687 GCATGCGATCAAGTGGTACG 59.698 55.000 0.00 0.00 0.00 3.67
8952 14922 0.885879 TGCGATCAAGTGGTACGAGT 59.114 50.000 0.00 0.00 0.00 4.18
8998 14969 1.447317 CGGGCTTATCCATGTGGCAC 61.447 60.000 11.55 11.55 36.21 5.01
9059 15031 5.047021 ACGGCACTTGCACATATCTATCTAT 60.047 40.000 3.15 0.00 44.36 1.98
9072 15056 7.176165 ACATATCTATCTATTCAAACGGACGGA 59.824 37.037 0.00 0.00 0.00 4.69
9078 15062 0.320946 TTCAAACGGACGGACATCCC 60.321 55.000 0.00 0.00 35.03 3.85
9143 15127 2.831742 CGCGCCTACCTCCCACTA 60.832 66.667 0.00 0.00 0.00 2.74
9179 15163 3.916392 GACGTGGAGTGGGCGAGTG 62.916 68.421 0.00 0.00 0.00 3.51
9249 15237 1.098050 GACACCATTGACCATGAGGC 58.902 55.000 0.00 0.00 39.06 4.70
9250 15238 0.700564 ACACCATTGACCATGAGGCT 59.299 50.000 0.00 0.00 39.06 4.58
9252 15240 0.682209 ACCATTGACCATGAGGCTGC 60.682 55.000 0.00 0.00 39.06 5.25
9253 15241 0.395311 CCATTGACCATGAGGCTGCT 60.395 55.000 0.00 0.00 39.06 4.24
9254 15242 0.738975 CATTGACCATGAGGCTGCTG 59.261 55.000 0.00 0.00 39.06 4.41
9255 15243 0.395311 ATTGACCATGAGGCTGCTGG 60.395 55.000 9.78 9.78 39.06 4.85
9256 15244 2.827642 GACCATGAGGCTGCTGGC 60.828 66.667 9.27 9.27 39.06 4.85
9293 15281 2.024176 TCCGAGCTAAATTGTCTGCC 57.976 50.000 0.00 0.00 0.00 4.85
9298 15291 2.360165 GAGCTAAATTGTCTGCCCATGG 59.640 50.000 4.14 4.14 0.00 3.66
9376 15369 5.420739 TCATTGGTTTTGGAGCCTTATTACC 59.579 40.000 0.00 0.00 0.00 2.85
9382 15375 6.412214 GTTTTGGAGCCTTATTACCAGTAGA 58.588 40.000 0.00 0.00 33.85 2.59
9383 15376 5.871396 TTGGAGCCTTATTACCAGTAGAG 57.129 43.478 0.00 0.00 33.85 2.43
9401 15394 7.285629 CCAGTAGAGTACCATCTTCAGTTGATA 59.714 40.741 0.00 0.00 0.00 2.15
9411 15404 6.093219 CCATCTTCAGTTGATACAGAAACCTG 59.907 42.308 0.00 0.00 37.67 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.487905 CTCATCGGAGATGGGACACAACAT 62.488 50.000 3.95 0.00 44.26 2.71
4 5 5.244862 CTCATCGGAGATGGGACACAACA 62.245 52.174 3.95 0.00 44.26 3.33
5 6 2.739932 CTCATCGGAGATGGGACACAAC 60.740 54.545 3.95 0.00 44.26 3.32
8 9 1.403814 TCTCATCGGAGATGGGACAC 58.596 55.000 8.39 0.00 45.12 3.67
9 10 3.924576 TCTCATCGGAGATGGGACA 57.075 52.632 8.39 0.00 45.12 4.02
20 21 1.001924 CCTGACGACCATCTCTCATCG 60.002 57.143 0.00 0.00 40.39 3.84
22 23 1.063642 TCCCTGACGACCATCTCTCAT 60.064 52.381 0.00 0.00 0.00 2.90
33 34 2.060383 CAGCCCTGATCCCTGACGA 61.060 63.158 0.00 0.00 0.00 4.20
39 40 4.201122 CCCTGCAGCCCTGATCCC 62.201 72.222 8.66 0.00 0.00 3.85
73 74 2.041755 ACCCATTCCTTCCTTTCTCACC 59.958 50.000 0.00 0.00 0.00 4.02
75 76 2.041620 CCACCCATTCCTTCCTTTCTCA 59.958 50.000 0.00 0.00 0.00 3.27
82 84 2.308866 TCTTTCTCCACCCATTCCTTCC 59.691 50.000 0.00 0.00 0.00 3.46
83 85 3.348119 GTCTTTCTCCACCCATTCCTTC 58.652 50.000 0.00 0.00 0.00 3.46
90 92 1.554822 CCCTAGGTCTTTCTCCACCCA 60.555 57.143 8.29 0.00 32.45 4.51
99 101 0.501468 ACCCCCTTCCCTAGGTCTTT 59.499 55.000 8.29 0.00 43.07 2.52
100 102 0.253207 CACCCCCTTCCCTAGGTCTT 60.253 60.000 8.29 0.00 43.07 3.01
104 106 0.983378 CTCACACCCCCTTCCCTAGG 60.983 65.000 0.06 0.06 44.33 3.02
107 109 2.204151 CCTCACACCCCCTTCCCT 60.204 66.667 0.00 0.00 0.00 4.20
111 113 2.928396 CGACCCTCACACCCCCTT 60.928 66.667 0.00 0.00 0.00 3.95
152 154 2.203070 GGCAGCATCGATCCCGTT 60.203 61.111 0.00 0.00 37.05 4.44
175 178 4.093291 CGCAGCTCAGCTTCCCCT 62.093 66.667 0.00 0.00 36.40 4.79
188 191 2.827604 TTTTTCTCCTCGAGCGCAG 58.172 52.632 11.47 2.69 0.00 5.18
205 208 7.324935 TCATTATCAGCATTGCACATTTCTTT 58.675 30.769 11.91 0.00 0.00 2.52
209 212 6.046593 CCTTCATTATCAGCATTGCACATTT 58.953 36.000 11.91 0.00 0.00 2.32
212 215 3.382227 CCCTTCATTATCAGCATTGCACA 59.618 43.478 11.91 0.00 0.00 4.57
213 216 3.243636 CCCCTTCATTATCAGCATTGCAC 60.244 47.826 11.91 0.00 0.00 4.57
214 217 2.960384 CCCCTTCATTATCAGCATTGCA 59.040 45.455 11.91 0.00 0.00 4.08
216 219 3.243636 GCACCCCTTCATTATCAGCATTG 60.244 47.826 0.00 0.00 0.00 2.82
217 220 2.961062 GCACCCCTTCATTATCAGCATT 59.039 45.455 0.00 0.00 0.00 3.56
222 225 0.813610 CGCGCACCCCTTCATTATCA 60.814 55.000 8.75 0.00 0.00 2.15
227 230 3.055719 CAACGCGCACCCCTTCAT 61.056 61.111 5.73 0.00 0.00 2.57
228 231 4.555709 ACAACGCGCACCCCTTCA 62.556 61.111 5.73 0.00 0.00 3.02
285 288 0.678048 AGGAAGATTGCGCTTGTCCC 60.678 55.000 9.73 2.95 0.00 4.46
286 289 1.131315 GAAGGAAGATTGCGCTTGTCC 59.869 52.381 9.73 8.47 0.00 4.02
287 290 1.201965 CGAAGGAAGATTGCGCTTGTC 60.202 52.381 9.73 3.89 0.00 3.18
288 291 0.798776 CGAAGGAAGATTGCGCTTGT 59.201 50.000 9.73 0.00 0.00 3.16
289 292 3.593247 CGAAGGAAGATTGCGCTTG 57.407 52.632 9.73 0.00 0.00 4.01
304 307 2.801679 GTTTTGTGTATGACCGACCGAA 59.198 45.455 0.00 0.00 0.00 4.30
319 322 5.530543 CCTACCATTTTGGCAAATGTTTTGT 59.469 36.000 14.29 8.11 45.57 2.83
321 324 4.518590 GCCTACCATTTTGGCAAATGTTTT 59.481 37.500 14.29 0.54 45.57 2.43
365 368 5.764686 GGAGAACATGTAACATGGCATGATA 59.235 40.000 32.74 22.66 43.60 2.15
464 469 4.645762 TTGAGAGAAGAGGATCATGTCG 57.354 45.455 0.00 0.00 37.82 4.35
546 4976 5.393027 CGATGGGTTCCGAAATTTTCTGATT 60.393 40.000 7.50 0.00 0.00 2.57
558 4988 2.923426 GATGCAGCGATGGGTTCCGA 62.923 60.000 1.46 0.00 0.00 4.55
664 5514 4.904590 TTGTGGGCCGTTGGGTGG 62.905 66.667 0.00 0.00 34.97 4.61
666 5516 3.785122 GACTTGTGGGCCGTTGGGT 62.785 63.158 0.00 0.00 34.97 4.51
762 5612 3.005261 TCATTGGGTTTGATCGTGGTTTG 59.995 43.478 0.00 0.00 0.00 2.93
772 5622 1.993956 CCACTGGTCATTGGGTTTGA 58.006 50.000 0.02 0.00 0.00 2.69
833 5683 0.920664 GTTTTTGTGTGCGGTTGCTC 59.079 50.000 0.00 0.00 43.34 4.26
843 5693 5.313712 AGAATATCGTGGAGGTTTTTGTGT 58.686 37.500 0.00 0.00 0.00 3.72
862 5712 1.606531 GCTGGGCCAGTGAGAGAAT 59.393 57.895 32.80 0.00 33.43 2.40
918 5780 0.179084 CTTTTCTGCGGCGGGATAGA 60.179 55.000 9.78 0.00 0.00 1.98
919 5781 0.462047 ACTTTTCTGCGGCGGGATAG 60.462 55.000 9.78 7.50 0.00 2.08
920 5782 0.742990 CACTTTTCTGCGGCGGGATA 60.743 55.000 9.78 0.00 0.00 2.59
921 5783 2.040544 CACTTTTCTGCGGCGGGAT 61.041 57.895 9.78 0.00 0.00 3.85
945 5807 2.273912 ACCAACCTCCCGAGTCGAC 61.274 63.158 15.64 7.70 0.00 4.20
950 5812 0.464452 GATACCACCAACCTCCCGAG 59.536 60.000 0.00 0.00 0.00 4.63
1297 6183 3.775654 GTGCGGGGAGTGAGGGAG 61.776 72.222 0.00 0.00 0.00 4.30
1298 6184 4.316823 AGTGCGGGGAGTGAGGGA 62.317 66.667 0.00 0.00 0.00 4.20
1299 6185 3.775654 GAGTGCGGGGAGTGAGGG 61.776 72.222 0.00 0.00 0.00 4.30
1304 6190 2.203640 TCACAGAGTGCGGGGAGT 60.204 61.111 0.00 0.00 32.98 3.85
1341 6227 0.104462 CCCATCCATCCCCCACTCTA 60.104 60.000 0.00 0.00 0.00 2.43
1342 6228 1.386485 CCCATCCATCCCCCACTCT 60.386 63.158 0.00 0.00 0.00 3.24
1343 6229 2.464403 CCCCATCCATCCCCCACTC 61.464 68.421 0.00 0.00 0.00 3.51
1344 6230 2.370123 CCCCATCCATCCCCCACT 60.370 66.667 0.00 0.00 0.00 4.00
1345 6231 2.369568 TCCCCATCCATCCCCCAC 60.370 66.667 0.00 0.00 0.00 4.61
1346 6232 2.369568 GTCCCCATCCATCCCCCA 60.370 66.667 0.00 0.00 0.00 4.96
1436 6537 7.611770 TCATCTCTTTTATTCTCCTTTCGTGA 58.388 34.615 0.00 0.00 0.00 4.35
1499 6602 1.599047 CTCCAGAGCACCCACGAAT 59.401 57.895 0.00 0.00 0.00 3.34
1525 6628 2.238646 ACATAACGGCAGAATTCCAGGA 59.761 45.455 0.65 0.00 0.00 3.86
1614 6755 9.717942 GACTCCTAGCTGAAAATGTCATATAAT 57.282 33.333 0.00 0.00 35.07 1.28
1615 6756 8.150945 GGACTCCTAGCTGAAAATGTCATATAA 58.849 37.037 0.00 0.00 35.07 0.98
1616 6757 7.290014 TGGACTCCTAGCTGAAAATGTCATATA 59.710 37.037 0.00 0.00 35.07 0.86
1617 6758 6.100279 TGGACTCCTAGCTGAAAATGTCATAT 59.900 38.462 0.00 0.00 35.07 1.78
1618 6759 5.425217 TGGACTCCTAGCTGAAAATGTCATA 59.575 40.000 0.00 0.00 35.07 2.15
1619 6760 4.225942 TGGACTCCTAGCTGAAAATGTCAT 59.774 41.667 0.00 0.00 35.07 3.06
1620 6761 3.582647 TGGACTCCTAGCTGAAAATGTCA 59.417 43.478 0.00 0.00 34.17 3.58
1685 6827 0.533755 GCTGACACTGACAAGCCTGT 60.534 55.000 0.00 0.00 38.98 4.00
1693 6835 1.656095 GACGCAATAGCTGACACTGAC 59.344 52.381 0.00 0.00 39.10 3.51
1735 6877 3.366724 TGTTCGATCTTGCGTGATGTTAC 59.633 43.478 0.00 0.00 0.00 2.50
1745 6887 2.370281 TCCACTCTGTTCGATCTTGC 57.630 50.000 0.00 0.00 0.00 4.01
1753 6895 1.079503 GATGCGGTTCCACTCTGTTC 58.920 55.000 0.00 0.00 0.00 3.18
1759 6901 2.742372 GCACGATGCGGTTCCACT 60.742 61.111 0.00 0.00 31.71 4.00
1848 6996 3.845781 TCCAGGCATGTTCTAAGATCC 57.154 47.619 0.00 0.00 0.00 3.36
1873 7022 1.464608 TGAGTTATTTCGCTGCAGCAC 59.535 47.619 36.03 25.06 42.21 4.40
1876 7025 2.094894 CAGGTGAGTTATTTCGCTGCAG 59.905 50.000 10.11 10.11 0.00 4.41
1907 7056 6.183360 GGTTATACAGACAGAGACAACCTAGG 60.183 46.154 7.41 7.41 33.10 3.02
1933 7082 7.562821 AGAGAAGAGAATGGGAATAAATTTGGG 59.437 37.037 0.00 0.00 0.00 4.12
1937 7086 9.183368 GTTGAGAGAAGAGAATGGGAATAAATT 57.817 33.333 0.00 0.00 0.00 1.82
1983 7132 1.300963 GCAGTGGAATCAGGGAGCA 59.699 57.895 0.00 0.00 0.00 4.26
1985 7134 0.107312 CAGGCAGTGGAATCAGGGAG 60.107 60.000 0.00 0.00 0.00 4.30
1999 7155 2.359107 CGAAGAGCTTGCCAGGCA 60.359 61.111 11.22 11.22 36.47 4.75
2016 7172 1.728971 CATGGCTGTCAACGAAGAGTC 59.271 52.381 0.00 0.00 0.00 3.36
2017 7173 1.800805 CATGGCTGTCAACGAAGAGT 58.199 50.000 0.00 0.00 0.00 3.24
2034 7190 2.867109 AAGCACTACAAGGTCTGCAT 57.133 45.000 0.00 0.00 0.00 3.96
2161 7317 9.191995 GTTAGTGTTGAGGGAAATTATTTTGTG 57.808 33.333 0.00 0.00 0.00 3.33
2221 7377 3.057315 GCTTTGCCTGACAAGATTGCTAA 60.057 43.478 0.00 0.00 40.06 3.09
2359 7515 6.127897 CCTGTAACAATTCCAGAGAACAATCC 60.128 42.308 0.00 0.00 33.97 3.01
2371 7527 6.004574 AGAGAAGAAACCCTGTAACAATTCC 58.995 40.000 0.00 0.00 0.00 3.01
2473 7629 3.568007 TCAACAAAGTGCCAAGGTATGTC 59.432 43.478 0.00 0.00 0.00 3.06
2601 7761 7.061441 GTGCTGAGTATCACATCAAACAAAATG 59.939 37.037 0.00 0.00 42.56 2.32
2630 7792 1.134250 GCCCCTTCTGCTAGAAAGGAG 60.134 57.143 16.44 7.21 37.91 3.69
2632 7794 0.620556 TGCCCCTTCTGCTAGAAAGG 59.379 55.000 10.51 10.51 35.94 3.11
2725 7887 6.826741 TGGAAGTAAGGAAATAGGTATTGCAC 59.173 38.462 0.00 0.00 0.00 4.57
2837 8001 4.018415 ACATACTGAGGCAACCTTTACCAT 60.018 41.667 0.00 0.00 31.76 3.55
3023 8187 7.035004 TCAACCACAAAGAAATGAAAGAAGTG 58.965 34.615 0.00 0.00 0.00 3.16
3107 8287 0.108585 TCTCCAAGCAGACACAACCC 59.891 55.000 0.00 0.00 0.00 4.11
3110 8290 1.881973 GCATTCTCCAAGCAGACACAA 59.118 47.619 0.00 0.00 0.00 3.33
3328 8625 7.654022 TTTTAGAACAACAGGGACAAGAAAT 57.346 32.000 0.00 0.00 0.00 2.17
3532 8965 3.187700 CATCACTCGCTAACTACAACCC 58.812 50.000 0.00 0.00 0.00 4.11
3566 9001 6.369005 CACAGAAGAATGAAACACTGCTTAG 58.631 40.000 0.00 0.00 0.00 2.18
4006 9442 7.303634 ACTAGTGTGTTTTAACTGTGTCAAG 57.696 36.000 0.00 0.00 0.00 3.02
4400 9838 2.068519 TGTGCGTCACAGAAAGCTATG 58.931 47.619 8.32 0.00 39.62 2.23
4630 10136 4.192317 CAGAAGGCTAGGTTCCATTACAC 58.808 47.826 0.00 0.00 0.00 2.90
4658 10164 2.906389 ACAGGCTTGAGGAACAGTATCA 59.094 45.455 1.40 0.00 0.00 2.15
4858 10366 6.365970 ACTTGACCATCAGAGTGATAAAGT 57.634 37.500 0.00 0.00 34.28 2.66
4964 10472 2.098117 GCACATGGGAAACTAGATGCAC 59.902 50.000 0.00 0.00 36.16 4.57
5145 10897 9.691362 ACAAAATGATCAACAGTTAATGGTAAC 57.309 29.630 0.00 0.00 40.05 2.50
5304 11056 2.806244 GCTAACGGTGTCACTGTTCATT 59.194 45.455 29.14 11.99 43.77 2.57
5885 11664 9.780186 AGTCTAAGTAACTTCAAGCAGTTAAAT 57.220 29.630 0.00 0.00 40.24 1.40
5993 11779 7.776618 ACTATGCTATAACATGCTAGTACCA 57.223 36.000 0.00 0.00 0.00 3.25
6101 11898 0.394899 GCTCAACTAAGGGGCTGCAT 60.395 55.000 0.50 0.00 0.00 3.96
6141 11938 5.551760 TGCTATTTTAGTTGCTGAAGAGC 57.448 39.130 0.00 0.00 46.44 4.09
6260 12058 6.043243 AGGGAGTGTTATGTTAATGGATCGAT 59.957 38.462 0.00 0.00 0.00 3.59
6287 12085 2.647846 ATGCCCCCTTTTCAGGAATT 57.352 45.000 0.00 0.00 44.19 2.17
6387 12185 1.314534 TGCTGATGCCCAATGGTTCG 61.315 55.000 0.00 0.00 38.71 3.95
6412 12210 6.294361 TCTTTTTCCCTTATCTGATCACGA 57.706 37.500 0.00 0.00 0.00 4.35
6462 12260 5.896106 TCATACATGTGGCATTTAATCCCAA 59.104 36.000 9.11 0.00 0.00 4.12
6575 12373 1.812922 GAGGTGCTGCATCCACTCG 60.813 63.158 9.72 0.00 33.78 4.18
6605 12403 3.891400 CGCCACCATCGCCATTGG 61.891 66.667 0.00 0.00 40.26 3.16
6671 12470 3.821033 AGACCAACAAGAAGTAATGTGGC 59.179 43.478 0.00 0.00 0.00 5.01
6685 12484 5.112686 GGTGTAATTTTGCAAAGACCAACA 58.887 37.500 12.41 10.58 0.00 3.33
6790 12595 6.041637 TCACTACAACTACAGGAAACAGACAT 59.958 38.462 0.00 0.00 0.00 3.06
6829 12640 7.495934 AGGTTGATGTGCTCAAATATGTAGTAC 59.504 37.037 0.00 0.00 45.27 2.73
6830 12641 7.564793 AGGTTGATGTGCTCAAATATGTAGTA 58.435 34.615 0.00 0.00 45.27 1.82
6831 12642 6.418101 AGGTTGATGTGCTCAAATATGTAGT 58.582 36.000 0.00 0.00 45.27 2.73
6832 12643 6.539826 TGAGGTTGATGTGCTCAAATATGTAG 59.460 38.462 0.00 0.00 45.27 2.74
6848 12659 8.717717 TGAAAGGATACATATTCTGAGGTTGAT 58.282 33.333 0.00 0.00 41.41 2.57
6920 12731 6.182627 GGAGGCATCACCATCATAAATATCA 58.817 40.000 0.00 0.00 43.14 2.15
7305 13204 4.736611 ATATTACAGGACGGAGGGAGTA 57.263 45.455 0.00 0.00 0.00 2.59
7306 13205 3.614568 ATATTACAGGACGGAGGGAGT 57.385 47.619 0.00 0.00 0.00 3.85
7307 13206 5.322754 TCTTATATTACAGGACGGAGGGAG 58.677 45.833 0.00 0.00 0.00 4.30
7308 13207 5.329191 TCTTATATTACAGGACGGAGGGA 57.671 43.478 0.00 0.00 0.00 4.20
7309 13208 6.014499 ACATTCTTATATTACAGGACGGAGGG 60.014 42.308 0.00 0.00 0.00 4.30
7310 13209 6.994221 ACATTCTTATATTACAGGACGGAGG 58.006 40.000 0.00 0.00 0.00 4.30
7311 13210 8.888579 AAACATTCTTATATTACAGGACGGAG 57.111 34.615 0.00 0.00 0.00 4.63
7312 13211 9.675464 AAAAACATTCTTATATTACAGGACGGA 57.325 29.630 0.00 0.00 0.00 4.69
7313 13212 9.716507 CAAAAACATTCTTATATTACAGGACGG 57.283 33.333 0.00 0.00 0.00 4.79
7326 13225 9.826574 ACTAGTGTAGTGTCAAAAACATTCTTA 57.173 29.630 0.00 0.00 40.80 2.10
7327 13226 8.732746 ACTAGTGTAGTGTCAAAAACATTCTT 57.267 30.769 0.00 0.00 40.80 2.52
7342 13241 6.335777 AGAACGTTTTTGACACTAGTGTAGT 58.664 36.000 27.98 15.35 45.05 2.73
7343 13242 6.823678 AGAACGTTTTTGACACTAGTGTAG 57.176 37.500 27.98 14.79 45.05 2.74
7344 13243 8.876275 ATAAGAACGTTTTTGACACTAGTGTA 57.124 30.769 27.98 11.50 45.05 2.90
7351 13250 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
7352 13251 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
7353 13252 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
7354 13253 9.451002 TGTCCCATAATATAAGAACGTTTTTGA 57.549 29.630 13.87 2.81 0.00 2.69
7355 13254 9.716507 CTGTCCCATAATATAAGAACGTTTTTG 57.283 33.333 13.87 0.00 0.00 2.44
7356 13255 9.675464 TCTGTCCCATAATATAAGAACGTTTTT 57.325 29.630 9.22 9.22 0.00 1.94
7357 13256 9.326413 CTCTGTCCCATAATATAAGAACGTTTT 57.674 33.333 0.46 0.00 0.00 2.43
7358 13257 7.931948 CCTCTGTCCCATAATATAAGAACGTTT 59.068 37.037 0.46 0.00 0.00 3.60
7359 13258 7.442656 CCTCTGTCCCATAATATAAGAACGTT 58.557 38.462 0.00 0.00 0.00 3.99
7360 13259 6.014499 CCCTCTGTCCCATAATATAAGAACGT 60.014 42.308 0.00 0.00 0.00 3.99
7361 13260 6.210784 TCCCTCTGTCCCATAATATAAGAACG 59.789 42.308 0.00 0.00 0.00 3.95
7362 13261 7.235812 ACTCCCTCTGTCCCATAATATAAGAAC 59.764 40.741 0.00 0.00 0.00 3.01
7363 13262 7.313731 ACTCCCTCTGTCCCATAATATAAGAA 58.686 38.462 0.00 0.00 0.00 2.52
7364 13263 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
7365 13264 8.116669 TCTACTCCCTCTGTCCCATAATATAAG 58.883 40.741 0.00 0.00 0.00 1.73
7366 13265 8.008104 TCTACTCCCTCTGTCCCATAATATAA 57.992 38.462 0.00 0.00 0.00 0.98
7367 13266 7.599353 TCTACTCCCTCTGTCCCATAATATA 57.401 40.000 0.00 0.00 0.00 0.86
7368 13267 6.485388 TCTACTCCCTCTGTCCCATAATAT 57.515 41.667 0.00 0.00 0.00 1.28
7369 13268 5.942977 TCTACTCCCTCTGTCCCATAATA 57.057 43.478 0.00 0.00 0.00 0.98
7370 13269 4.834406 TCTACTCCCTCTGTCCCATAAT 57.166 45.455 0.00 0.00 0.00 1.28
7371 13270 4.620086 TTCTACTCCCTCTGTCCCATAA 57.380 45.455 0.00 0.00 0.00 1.90
7372 13271 4.834406 ATTCTACTCCCTCTGTCCCATA 57.166 45.455 0.00 0.00 0.00 2.74
7373 13272 3.713764 CAATTCTACTCCCTCTGTCCCAT 59.286 47.826 0.00 0.00 0.00 4.00
7374 13273 3.107601 CAATTCTACTCCCTCTGTCCCA 58.892 50.000 0.00 0.00 0.00 4.37
7375 13274 3.108376 ACAATTCTACTCCCTCTGTCCC 58.892 50.000 0.00 0.00 0.00 4.46
7376 13275 6.015265 GGTATACAATTCTACTCCCTCTGTCC 60.015 46.154 5.01 0.00 0.00 4.02
7377 13276 6.778559 AGGTATACAATTCTACTCCCTCTGTC 59.221 42.308 5.01 0.00 0.00 3.51
7378 13277 6.684538 AGGTATACAATTCTACTCCCTCTGT 58.315 40.000 5.01 0.00 0.00 3.41
7379 13278 7.287927 TCAAGGTATACAATTCTACTCCCTCTG 59.712 40.741 5.01 0.00 0.00 3.35
7380 13279 7.363031 TCAAGGTATACAATTCTACTCCCTCT 58.637 38.462 5.01 0.00 0.00 3.69
7381 13280 7.598759 TCAAGGTATACAATTCTACTCCCTC 57.401 40.000 5.01 0.00 0.00 4.30
7382 13281 8.013667 AGATCAAGGTATACAATTCTACTCCCT 58.986 37.037 5.01 0.00 0.00 4.20
7383 13282 8.196378 AGATCAAGGTATACAATTCTACTCCC 57.804 38.462 5.01 0.00 0.00 4.30
7384 13283 8.861086 TGAGATCAAGGTATACAATTCTACTCC 58.139 37.037 5.01 0.00 0.00 3.85
7428 13327 1.544724 GCCCAATGAGGTGCAAAGTA 58.455 50.000 0.00 0.00 34.73 2.24
7481 13380 7.318141 CCATATCATGGCAAATCTAATGAACC 58.682 38.462 0.00 0.00 44.70 3.62
7665 13564 9.672673 ATGAAAGCAATGTCTTAACATAGTAGT 57.327 29.630 0.00 0.00 45.48 2.73
7666 13565 9.926751 CATGAAAGCAATGTCTTAACATAGTAG 57.073 33.333 0.00 0.00 45.48 2.57
7740 13639 4.467082 AGCTCATTTGGGTTTTATGCATCA 59.533 37.500 0.19 0.00 0.00 3.07
7784 13684 1.135689 GGTGCAGTATTTTGGCAGTCG 60.136 52.381 0.00 0.00 38.38 4.18
7885 13785 1.150536 GGTCACCTTTGGCTCCACA 59.849 57.895 0.00 0.00 0.00 4.17
7924 13824 2.817258 CCGCTTGTTGGACTTGGAATTA 59.183 45.455 0.00 0.00 0.00 1.40
8113 14013 3.086600 CCTCTGCCCCTCCCAGAC 61.087 72.222 0.00 0.00 35.60 3.51
8209 14109 2.119655 GCTCGCCGGAGAGGTCTAA 61.120 63.158 32.51 0.00 43.27 2.10
8215 14115 1.376037 AAAAAGGCTCGCCGGAGAG 60.376 57.895 28.81 28.81 43.27 3.20
8216 14116 1.671054 CAAAAAGGCTCGCCGGAGA 60.671 57.895 5.05 6.70 43.27 3.71
8220 14120 1.791103 TTCACCAAAAAGGCTCGCCG 61.791 55.000 1.69 0.00 43.14 6.46
8235 14135 5.053145 AGATATCGCTTGACCTGATTTCAC 58.947 41.667 0.00 0.00 0.00 3.18
8269 14170 1.453235 CCGGGCTGGATCACATCAT 59.547 57.895 6.48 0.00 42.00 2.45
8286 14187 1.751924 AGAGAGTACTGTCGAATGGCC 59.248 52.381 13.86 0.00 0.00 5.36
8296 14197 1.135141 GCAGGCAGTCAGAGAGTACTG 60.135 57.143 0.00 0.00 44.79 2.74
8300 14201 2.157640 ATAGCAGGCAGTCAGAGAGT 57.842 50.000 0.00 0.00 0.00 3.24
8375 14276 2.286713 TGAATAATACGGTTGCGCATGC 60.287 45.455 12.75 7.91 43.20 4.06
8405 14306 4.472691 TGAGCAGAAAAATTCACTCACG 57.527 40.909 10.12 0.00 39.02 4.35
8415 14316 3.210227 TCCACACGATTGAGCAGAAAAA 58.790 40.909 0.00 0.00 0.00 1.94
8446 14347 6.603237 AAAAATTAAGCCAACAACTCAAGC 57.397 33.333 0.00 0.00 0.00 4.01
8609 14512 6.148811 CGATGTACTGGGTGAATAAAGTTTGT 59.851 38.462 0.00 0.00 0.00 2.83
8640 14576 2.030562 CGGAGCCAAACTGGTCGT 59.969 61.111 0.00 0.00 40.46 4.34
8683 14619 2.354003 GGAGGAAACGAATACCAACGGA 60.354 50.000 0.00 0.00 0.00 4.69
8684 14620 2.004733 GGAGGAAACGAATACCAACGG 58.995 52.381 0.00 0.00 0.00 4.44
8685 14621 2.968675 AGGAGGAAACGAATACCAACG 58.031 47.619 0.00 0.00 0.00 4.10
8686 14622 5.082251 ACTAGGAGGAAACGAATACCAAC 57.918 43.478 0.00 0.00 0.00 3.77
8687 14623 5.954150 AGTACTAGGAGGAAACGAATACCAA 59.046 40.000 0.00 0.00 0.00 3.67
8688 14624 5.359009 CAGTACTAGGAGGAAACGAATACCA 59.641 44.000 0.00 0.00 0.00 3.25
8689 14625 5.735638 GCAGTACTAGGAGGAAACGAATACC 60.736 48.000 0.00 0.00 0.00 2.73
8694 14630 2.097825 GGCAGTACTAGGAGGAAACGA 58.902 52.381 0.00 0.00 0.00 3.85
8734 14678 4.733887 GGATCTGAAGAACATGTACGTACG 59.266 45.833 20.18 15.01 0.00 3.67
8753 14697 5.405571 CGTGCAAGTATATAACTGGTGGATC 59.594 44.000 0.00 0.00 38.88 3.36
8761 14705 7.094631 TCTTGTGAACGTGCAAGTATATAACT 58.905 34.615 19.98 0.00 41.83 2.24
8764 14709 6.627243 ACTCTTGTGAACGTGCAAGTATATA 58.373 36.000 19.98 0.00 41.83 0.86
8773 14718 4.992381 AAGATAACTCTTGTGAACGTGC 57.008 40.909 0.00 0.00 40.28 5.34
8790 14735 6.875972 ACCAGGAGTAGTACATTCAAAGAT 57.124 37.500 2.52 0.00 0.00 2.40
8805 14750 1.274184 TGCCACCCTTATACCAGGAGT 60.274 52.381 0.00 0.00 35.71 3.85
8823 14768 2.878406 AGTACCATTGGATGCGTATTGC 59.122 45.455 10.37 0.00 46.70 3.56
8826 14771 4.948341 TGTAGTACCATTGGATGCGTAT 57.052 40.909 10.37 0.00 0.00 3.06
8841 14786 9.759473 AGGTACCAGTAAACTATTCTTGTAGTA 57.241 33.333 15.94 0.00 33.92 1.82
8842 14787 8.661752 AGGTACCAGTAAACTATTCTTGTAGT 57.338 34.615 15.94 0.00 36.50 2.73
8843 14788 8.968969 AGAGGTACCAGTAAACTATTCTTGTAG 58.031 37.037 15.94 0.00 0.00 2.74
8871 14816 3.561313 GGGCAATTCAGTTTGGAGGTAGA 60.561 47.826 0.00 0.00 0.00 2.59
8873 14818 2.556559 GGGGCAATTCAGTTTGGAGGTA 60.557 50.000 0.00 0.00 0.00 3.08
8875 14820 0.897621 GGGGCAATTCAGTTTGGAGG 59.102 55.000 0.00 0.00 0.00 4.30
8876 14821 1.547372 CAGGGGCAATTCAGTTTGGAG 59.453 52.381 0.00 0.00 0.00 3.86
8878 14823 1.631405 TCAGGGGCAATTCAGTTTGG 58.369 50.000 0.00 0.00 0.00 3.28
8879 14824 5.404466 TTTATCAGGGGCAATTCAGTTTG 57.596 39.130 0.00 0.00 0.00 2.93
8883 14849 6.302269 ACTCTATTTATCAGGGGCAATTCAG 58.698 40.000 0.00 0.00 0.00 3.02
8908 14874 1.579698 CCAACTGCCTCATCTCATCG 58.420 55.000 0.00 0.00 0.00 3.84
8917 14887 2.413142 GCATGCTCCCAACTGCCTC 61.413 63.158 11.37 0.00 0.00 4.70
8934 14904 2.717530 CTACTCGTACCACTTGATCGC 58.282 52.381 0.00 0.00 0.00 4.58
8949 14919 3.589988 ACACTGCATGTTACTGCTACTC 58.410 45.455 0.00 0.00 38.98 2.59
8952 14922 2.354704 GGGACACTGCATGTTACTGCTA 60.355 50.000 0.00 0.00 43.56 3.49
8998 14969 4.559063 CTCGCAGGGGGCATCCAG 62.559 72.222 0.00 0.00 45.17 3.86
9059 15031 0.320946 GGGATGTCCGTCCGTTTGAA 60.321 55.000 0.00 0.00 39.26 2.69
9072 15056 4.018779 CCCGTATATGTTTATGGGGGATGT 60.019 45.833 1.44 0.00 42.54 3.06
9143 15127 4.368391 GCCGCTACATGCTGCTAT 57.632 55.556 0.00 0.00 46.27 2.97
9163 15147 4.742201 CCACTCGCCCACTCCACG 62.742 72.222 0.00 0.00 0.00 4.94
9166 15150 4.021925 AAGCCACTCGCCCACTCC 62.022 66.667 0.00 0.00 38.78 3.85
9167 15151 2.743928 CAAGCCACTCGCCCACTC 60.744 66.667 0.00 0.00 38.78 3.51
9168 15152 4.335647 CCAAGCCACTCGCCCACT 62.336 66.667 0.00 0.00 38.78 4.00
9169 15153 4.643387 ACCAAGCCACTCGCCCAC 62.643 66.667 0.00 0.00 38.78 4.61
9170 15154 4.641645 CACCAAGCCACTCGCCCA 62.642 66.667 0.00 0.00 38.78 5.36
9174 15158 3.052082 CTGCCACCAAGCCACTCG 61.052 66.667 0.00 0.00 0.00 4.18
9255 15243 0.466922 AATCTACCATGGCAGCAGGC 60.467 55.000 13.04 0.00 43.74 4.85
9256 15244 1.602311 GAATCTACCATGGCAGCAGG 58.398 55.000 13.04 0.00 0.00 4.85
9293 15281 1.747355 GTTGAGGACTTGATGCCATGG 59.253 52.381 7.63 7.63 0.00 3.66
9298 15291 0.166814 GCACGTTGAGGACTTGATGC 59.833 55.000 0.00 0.00 29.42 3.91
9299 15292 0.439985 CGCACGTTGAGGACTTGATG 59.560 55.000 0.00 0.00 29.42 3.07
9300 15293 0.033504 ACGCACGTTGAGGACTTGAT 59.966 50.000 0.00 0.00 29.42 2.57
9306 15299 3.096633 AACCCACGCACGTTGAGGA 62.097 57.895 9.84 0.00 0.00 3.71
9308 15301 2.631428 CAACCCACGCACGTTGAG 59.369 61.111 0.00 0.00 41.53 3.02
9309 15302 2.897846 CCAACCCACGCACGTTGA 60.898 61.111 9.84 0.00 41.53 3.18
9376 15369 6.516739 TCAACTGAAGATGGTACTCTACTG 57.483 41.667 0.00 0.00 0.00 2.74
9382 15375 7.482169 TTCTGTATCAACTGAAGATGGTACT 57.518 36.000 11.02 0.00 38.28 2.73
9383 15376 7.064728 GGTTTCTGTATCAACTGAAGATGGTAC 59.935 40.741 4.52 4.52 42.35 3.34
9401 15394 4.363991 AGAAGCATCTTCAGGTTTCTGT 57.636 40.909 8.98 0.00 41.59 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.