Multiple sequence alignment - TraesCS2A01G492100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G492100 chr2A 100.000 4615 0 0 1 4615 724519954 724524568 0.000000e+00 8523
1 TraesCS2A01G492100 chr2A 91.489 517 33 6 339 851 687890392 687889883 0.000000e+00 701
2 TraesCS2A01G492100 chr2A 91.048 525 36 3 339 859 485200258 485199741 0.000000e+00 699
3 TraesCS2A01G492100 chr2A 89.454 531 44 6 333 859 485220827 485220305 0.000000e+00 660
4 TraesCS2A01G492100 chr2A 91.497 294 12 7 1 293 485200532 485200251 4.330000e-105 392
5 TraesCS2A01G492100 chr2A 90.816 294 14 7 1 293 687890666 687890385 9.370000e-102 381
6 TraesCS2A01G492100 chr2A 91.489 282 13 5 1 281 485221096 485220825 1.210000e-100 377
7 TraesCS2A01G492100 chr2B 91.560 2192 132 22 280 2447 714782156 714784318 0.000000e+00 2974
8 TraesCS2A01G492100 chr2B 87.626 1980 137 57 2700 4615 714784873 714786808 0.000000e+00 2200
9 TraesCS2A01G492100 chr2B 92.843 517 26 4 339 851 263832876 263832367 0.000000e+00 739
10 TraesCS2A01G492100 chr2B 91.389 511 33 5 339 845 772923381 772923884 0.000000e+00 689
11 TraesCS2A01G492100 chr2B 91.156 294 13 7 1 293 263833150 263832869 2.010000e-103 387
12 TraesCS2A01G492100 chr2B 88.542 288 12 8 1 286 772923115 772923383 3.440000e-86 329
13 TraesCS2A01G492100 chr2B 90.909 231 10 5 2458 2681 714784359 714784585 2.700000e-77 300
14 TraesCS2A01G492100 chr2D 87.033 1982 163 54 1 1943 590152360 590154286 0.000000e+00 2150
15 TraesCS2A01G492100 chr2D 86.914 1215 72 38 3413 4594 590156000 590157160 0.000000e+00 1282
16 TraesCS2A01G492100 chr2D 90.370 675 52 5 2746 3415 590155298 590155964 0.000000e+00 874
17 TraesCS2A01G492100 chr2D 81.612 397 36 16 1964 2339 590154270 590154650 1.260000e-75 294
18 TraesCS2A01G492100 chr1D 91.878 591 27 12 1715 2296 20356327 20355749 0.000000e+00 806
19 TraesCS2A01G492100 chr6B 91.440 514 33 4 339 848 95970352 95969846 0.000000e+00 695
20 TraesCS2A01G492100 chr6B 91.837 294 11 8 1 293 95970626 95970345 9.300000e-107 398
21 TraesCS2A01G492100 chr7A 90.462 346 32 1 3017 3361 556102889 556102544 5.440000e-124 455
22 TraesCS2A01G492100 chr7D 89.855 345 35 0 3017 3361 488609372 488609028 1.180000e-120 444
23 TraesCS2A01G492100 chr7B 89.565 345 36 0 3017 3361 516931633 516931289 5.480000e-119 438


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G492100 chr2A 724519954 724524568 4614 False 8523.000000 8523 100.000000 1 4615 1 chr2A.!!$F1 4614
1 TraesCS2A01G492100 chr2A 485199741 485200532 791 True 545.500000 699 91.272500 1 859 2 chr2A.!!$R1 858
2 TraesCS2A01G492100 chr2A 687889883 687890666 783 True 541.000000 701 91.152500 1 851 2 chr2A.!!$R3 850
3 TraesCS2A01G492100 chr2A 485220305 485221096 791 True 518.500000 660 90.471500 1 859 2 chr2A.!!$R2 858
4 TraesCS2A01G492100 chr2B 714782156 714786808 4652 False 1824.666667 2974 90.031667 280 4615 3 chr2B.!!$F1 4335
5 TraesCS2A01G492100 chr2B 263832367 263833150 783 True 563.000000 739 91.999500 1 851 2 chr2B.!!$R1 850
6 TraesCS2A01G492100 chr2B 772923115 772923884 769 False 509.000000 689 89.965500 1 845 2 chr2B.!!$F2 844
7 TraesCS2A01G492100 chr2D 590152360 590157160 4800 False 1150.000000 2150 86.482250 1 4594 4 chr2D.!!$F1 4593
8 TraesCS2A01G492100 chr1D 20355749 20356327 578 True 806.000000 806 91.878000 1715 2296 1 chr1D.!!$R1 581
9 TraesCS2A01G492100 chr6B 95969846 95970626 780 True 546.500000 695 91.638500 1 848 2 chr6B.!!$R1 847

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
949 1031 0.172578 CACTTGTAGCCGTCCGATCA 59.827 55.0 0.0 0.0 0.00 2.92 F
1448 1537 0.179004 ATTGAAACACTGCCACGGGA 60.179 50.0 0.0 0.0 0.00 5.14 F
3053 3690 0.598680 CGAAGCATCACCCCGATCTC 60.599 60.0 0.0 0.0 29.21 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2684 3043 0.107557 CGTGTAATACCCCCACACCC 60.108 60.0 0.00 0.0 39.49 4.61 R
3372 4009 0.329596 GGACCTGGCCAAGAATCTGT 59.670 55.0 8.77 0.0 0.00 3.41 R
4192 4920 0.108329 AAAGTCCATGAGGCGTACGG 60.108 55.0 18.39 0.0 33.74 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 8.732746 GGTTAATACCATACATCTTGTGAGTT 57.267 34.615 0.00 0.00 44.36 3.01
139 149 4.164988 GCCTTAGTGCCCATCATAGGATAT 59.835 45.833 0.00 0.00 30.87 1.63
140 150 5.366768 GCCTTAGTGCCCATCATAGGATATA 59.633 44.000 0.00 0.00 30.87 0.86
141 151 6.463614 GCCTTAGTGCCCATCATAGGATATAG 60.464 46.154 0.00 0.00 30.87 1.31
145 155 7.847711 AGTGCCCATCATAGGATATAGTATC 57.152 40.000 0.00 0.00 30.87 2.24
182 192 1.138069 TCGGCAGCATTTCGAAGGATA 59.862 47.619 0.00 0.00 0.00 2.59
323 333 3.095163 CCCATCTGGCCCTGCTCT 61.095 66.667 0.00 0.00 0.00 4.09
428 497 3.057734 ACGACAAGAGGAACACGAATTC 58.942 45.455 0.00 0.00 0.00 2.17
430 499 3.679980 CGACAAGAGGAACACGAATTCAT 59.320 43.478 6.22 0.00 0.00 2.57
450 519 3.206957 GGGGGATAAACGCACGGC 61.207 66.667 0.00 0.00 0.00 5.68
480 549 1.152440 ACAAAAATGTGGGCGGGGA 60.152 52.632 0.00 0.00 0.00 4.81
498 567 2.616510 GGGATCGAAGAGGGCCATATTG 60.617 54.545 0.04 0.00 43.63 1.90
662 731 4.074526 GACTGCAGCCTCGCCTGA 62.075 66.667 15.27 0.00 34.77 3.86
848 920 3.050275 GTGCCACTGGAGAACGGC 61.050 66.667 0.00 0.00 45.11 5.68
853 925 1.439679 CCACTGGAGAACGGCTTAAC 58.560 55.000 0.00 0.00 0.00 2.01
860 932 0.323957 AGAACGGCTTAACAGGGGAC 59.676 55.000 0.00 0.00 0.00 4.46
895 976 3.246112 CCGACAGGTGGGACCCAA 61.246 66.667 16.98 0.00 39.75 4.12
907 989 1.602771 GACCCAACCCAGTAGAGCC 59.397 63.158 0.00 0.00 0.00 4.70
924 1006 1.383456 GCCAAATATGCTGGACCGCA 61.383 55.000 12.33 12.33 45.10 5.69
926 1008 0.381801 CAAATATGCTGGACCGCACC 59.618 55.000 12.22 0.00 43.61 5.01
949 1031 0.172578 CACTTGTAGCCGTCCGATCA 59.827 55.000 0.00 0.00 0.00 2.92
997 1079 1.645034 CCATCGTAGCACACCTCTTG 58.355 55.000 0.00 0.00 0.00 3.02
1021 1103 5.877564 GGTCTTTTATCTGCAAGCTTCTAGT 59.122 40.000 0.00 0.00 0.00 2.57
1057 1141 1.021202 CGCCAAAATCTATTCCGCCA 58.979 50.000 0.00 0.00 0.00 5.69
1079 1168 3.771491 CGTCGACGTCGTCTCGGT 61.771 66.667 34.40 0.00 40.80 4.69
1121 1210 3.741476 GCAAGGAGCCAAGGTGCG 61.741 66.667 0.00 0.00 37.23 5.34
1122 1211 2.032528 CAAGGAGCCAAGGTGCGA 59.967 61.111 0.00 0.00 36.02 5.10
1123 1212 2.037136 CAAGGAGCCAAGGTGCGAG 61.037 63.158 0.00 0.00 36.02 5.03
1188 1277 2.153034 ACCCTAGAGCTTCTCCTGTC 57.847 55.000 0.00 0.00 0.00 3.51
1192 1281 2.627699 CCTAGAGCTTCTCCTGTCATCC 59.372 54.545 0.00 0.00 0.00 3.51
1226 1315 1.002468 GCCGCTCGAAACATATGCATT 60.002 47.619 3.54 0.00 0.00 3.56
1263 1352 2.817423 GCTCCGGCGATTTCTGCTG 61.817 63.158 9.30 0.00 38.47 4.41
1264 1353 2.817423 CTCCGGCGATTTCTGCTGC 61.817 63.158 9.30 0.00 37.40 5.25
1276 1365 4.600576 TGCTGCGACGCTTGTCCA 62.601 61.111 22.08 7.76 39.56 4.02
1308 1397 4.530857 CCCCTTAGGTCAGCCGCG 62.531 72.222 0.00 0.00 40.50 6.46
1439 1528 0.749649 TGGCCGCAAATTGAAACACT 59.250 45.000 0.00 0.00 0.00 3.55
1445 1534 1.522258 GCAAATTGAAACACTGCCACG 59.478 47.619 0.00 0.00 0.00 4.94
1446 1535 2.126467 CAAATTGAAACACTGCCACGG 58.874 47.619 0.00 0.00 0.00 4.94
1448 1537 0.179004 ATTGAAACACTGCCACGGGA 60.179 50.000 0.00 0.00 0.00 5.14
1512 1601 7.023120 AGAGATGTAGGGGGCTATAATTGTTA 58.977 38.462 0.00 0.00 0.00 2.41
1513 1602 7.017319 AGATGTAGGGGGCTATAATTGTTAC 57.983 40.000 0.00 0.00 0.00 2.50
1808 1925 9.027202 TGCCATGCTCATGATATATAAATTTGT 57.973 29.630 11.17 0.00 41.20 2.83
2075 2210 4.096382 CCCCATAGTTGTGTTTGTGATAGC 59.904 45.833 0.00 0.00 0.00 2.97
2078 2213 6.542005 CCCATAGTTGTGTTTGTGATAGCATA 59.458 38.462 0.00 0.00 0.00 3.14
2096 2231 5.501156 AGCATAAGAGTTTTTCACCCCTAG 58.499 41.667 0.00 0.00 0.00 3.02
2097 2232 5.014228 AGCATAAGAGTTTTTCACCCCTAGT 59.986 40.000 0.00 0.00 0.00 2.57
2135 2270 7.441458 GTCAACCAGAAACTTCACATAACTAGT 59.559 37.037 0.00 0.00 0.00 2.57
2251 2386 2.313427 TGGGGGTGGTATTCAGGGC 61.313 63.158 0.00 0.00 0.00 5.19
2364 2514 7.092079 TGTCTTTGTGCTTTTATGATGGAATG 58.908 34.615 0.00 0.00 0.00 2.67
2365 2515 7.092716 GTCTTTGTGCTTTTATGATGGAATGT 58.907 34.615 0.00 0.00 0.00 2.71
2366 2516 7.599998 GTCTTTGTGCTTTTATGATGGAATGTT 59.400 33.333 0.00 0.00 0.00 2.71
2367 2517 8.149647 TCTTTGTGCTTTTATGATGGAATGTTT 58.850 29.630 0.00 0.00 0.00 2.83
2368 2518 8.674263 TTTGTGCTTTTATGATGGAATGTTTT 57.326 26.923 0.00 0.00 0.00 2.43
2369 2519 7.655236 TGTGCTTTTATGATGGAATGTTTTG 57.345 32.000 0.00 0.00 0.00 2.44
2370 2520 7.215789 TGTGCTTTTATGATGGAATGTTTTGT 58.784 30.769 0.00 0.00 0.00 2.83
2379 2529 6.339730 TGATGGAATGTTTTGTATGATTGGC 58.660 36.000 0.00 0.00 0.00 4.52
2384 2534 4.678509 TGTTTTGTATGATTGGCGAGAC 57.321 40.909 0.00 0.00 0.00 3.36
2387 2537 4.471904 TTTGTATGATTGGCGAGACTCT 57.528 40.909 0.03 0.00 0.00 3.24
2447 2597 4.724074 ATTTGCAGTCATACCCATTGTG 57.276 40.909 0.00 0.00 0.00 3.33
2448 2598 3.431673 TTGCAGTCATACCCATTGTGA 57.568 42.857 0.00 0.00 0.00 3.58
2452 2602 5.065235 TGCAGTCATACCCATTGTGATATG 58.935 41.667 0.00 0.00 0.00 1.78
2456 2606 7.420002 CAGTCATACCCATTGTGATATGTTTG 58.580 38.462 0.00 0.00 0.00 2.93
2494 2674 4.695455 ACAGTAAATGAAGACATTGGGACG 59.305 41.667 0.00 0.00 44.67 4.79
2514 2694 3.006430 ACGGATGGGGTTGAATTTGAAAC 59.994 43.478 0.00 0.00 0.00 2.78
2605 2960 4.999311 TCTGTTCTTGTCACCTTGATGATG 59.001 41.667 0.00 0.00 0.00 3.07
2607 2962 5.863965 TGTTCTTGTCACCTTGATGATGTA 58.136 37.500 0.00 0.00 0.00 2.29
2629 2984 8.932945 TGTAGAGCTTGATGAATTACTAGTTG 57.067 34.615 0.00 0.00 0.00 3.16
2672 3031 9.226345 GTAATGTTATCTTGTTTGCTTCTATGC 57.774 33.333 0.00 0.00 0.00 3.14
2673 3032 6.194796 TGTTATCTTGTTTGCTTCTATGCC 57.805 37.500 0.00 0.00 0.00 4.40
2675 3034 2.083774 TCTTGTTTGCTTCTATGCCGG 58.916 47.619 0.00 0.00 0.00 6.13
2676 3035 1.133025 CTTGTTTGCTTCTATGCCGGG 59.867 52.381 2.18 0.00 0.00 5.73
2697 3056 2.615929 GGGTGGGTGTGGGGGTAT 60.616 66.667 0.00 0.00 0.00 2.73
2698 3057 2.243144 GGGTGGGTGTGGGGGTATT 61.243 63.158 0.00 0.00 0.00 1.89
2728 3359 1.370900 GCCAGCAGTTGCAAGTTCG 60.371 57.895 3.38 0.00 45.16 3.95
2750 3381 5.912396 TCGACAAATAAAGTGCATCAACAAC 59.088 36.000 0.00 0.00 0.00 3.32
2776 3407 3.214696 TCTCCTCGAGATGCTACATCA 57.785 47.619 15.71 0.00 33.35 3.07
2784 3415 4.118410 CGAGATGCTACATCAAAAGCTCT 58.882 43.478 10.02 0.00 39.53 4.09
2840 3476 6.325596 GGATGCTTCACCACTTTATTTCTTC 58.674 40.000 1.64 0.00 0.00 2.87
2842 3478 6.959639 TGCTTCACCACTTTATTTCTTCTT 57.040 33.333 0.00 0.00 0.00 2.52
3053 3690 0.598680 CGAAGCATCACCCCGATCTC 60.599 60.000 0.00 0.00 29.21 2.75
3221 3858 2.501610 GTCATCTGCGGAGGGGTC 59.498 66.667 7.45 0.00 0.00 4.46
3329 3966 1.757699 GCCAAGACCGACCTCTTCTAT 59.242 52.381 0.00 0.00 0.00 1.98
3341 3978 3.055819 ACCTCTTCTATGAGCGCAAGAAA 60.056 43.478 11.47 3.95 43.02 2.52
3366 4003 3.242248 CGGTTTTAAGAAGCGATAGACGG 59.758 47.826 13.18 0.00 42.99 4.79
3372 4009 0.935898 GAAGCGATAGACGGACGAGA 59.064 55.000 0.00 0.00 42.83 4.04
3374 4011 0.461516 AGCGATAGACGGACGAGACA 60.462 55.000 0.00 0.00 42.83 3.41
3376 4013 1.568606 CGATAGACGGACGAGACAGA 58.431 55.000 0.00 0.00 38.46 3.41
3380 4017 2.116827 AGACGGACGAGACAGATTCT 57.883 50.000 0.00 0.00 37.23 2.40
3382 4019 2.162608 AGACGGACGAGACAGATTCTTG 59.837 50.000 0.00 0.00 41.23 3.02
3383 4020 1.202582 ACGGACGAGACAGATTCTTGG 59.797 52.381 0.00 0.00 39.87 3.61
3384 4021 1.646189 GGACGAGACAGATTCTTGGC 58.354 55.000 0.00 0.00 42.82 4.52
3385 4022 1.646189 GACGAGACAGATTCTTGGCC 58.354 55.000 0.00 0.00 37.79 5.36
3386 4023 0.976641 ACGAGACAGATTCTTGGCCA 59.023 50.000 0.00 0.00 39.87 5.36
3388 4025 1.741732 CGAGACAGATTCTTGGCCAGG 60.742 57.143 8.96 8.96 33.22 4.45
3390 4027 1.280421 AGACAGATTCTTGGCCAGGTC 59.720 52.381 15.41 6.05 0.00 3.85
3391 4028 0.329596 ACAGATTCTTGGCCAGGTCC 59.670 55.000 15.41 5.37 0.00 4.46
3392 4029 0.622665 CAGATTCTTGGCCAGGTCCT 59.377 55.000 15.41 7.58 0.00 3.85
3393 4030 0.915364 AGATTCTTGGCCAGGTCCTC 59.085 55.000 15.41 9.90 0.00 3.71
3394 4031 0.915364 GATTCTTGGCCAGGTCCTCT 59.085 55.000 15.41 0.00 0.00 3.69
3407 4044 2.027385 GGTCCTCTGGGCATCATTTTC 58.973 52.381 0.00 0.00 0.00 2.29
3431 4106 1.883544 TTTGCCGAACGAACAGCGA 60.884 52.632 0.00 0.00 44.57 4.93
3468 4151 5.989477 TGGTTTGGTACTGATAGGAGAATG 58.011 41.667 0.00 0.00 0.00 2.67
3475 4158 2.158900 ACTGATAGGAGAATGCAACCCG 60.159 50.000 0.00 0.00 0.00 5.28
3560 4254 1.586422 CTGCTTATGCGGTGCTATGT 58.414 50.000 1.25 0.00 43.34 2.29
3625 4319 2.690778 GCTTCCCGTGCCATGTCAC 61.691 63.158 0.00 0.00 0.00 3.67
3659 4353 2.585869 AAGTTGCAGCGACGTGACG 61.586 57.895 2.24 2.24 0.00 4.35
3725 4422 0.026803 GTGCGCTTTTCATAGAGCCG 59.973 55.000 9.73 0.00 39.80 5.52
3738 4441 4.400961 AGCCGGCTGGAAGTGCTC 62.401 66.667 32.33 0.00 37.49 4.26
3750 4453 2.028658 GGAAGTGCTCTGATCAGTGTCA 60.029 50.000 21.92 17.24 0.00 3.58
3771 4474 3.730761 CTGCGTGGTTGAGCCTGC 61.731 66.667 0.00 0.00 38.97 4.85
3794 4497 4.110493 GGGCACTAGTAGCGCTTG 57.890 61.111 18.68 8.78 41.20 4.01
3826 4529 1.858091 ATCCTGTATCGCAGCTTTCG 58.142 50.000 0.00 0.00 43.71 3.46
3879 4590 4.104102 ACAGGATTGTGGTTTCTTCAGGTA 59.896 41.667 0.00 0.00 35.83 3.08
3890 4601 5.875359 GGTTTCTTCAGGTAGAGGTTACATG 59.125 44.000 0.00 0.00 0.00 3.21
3891 4602 6.465084 GTTTCTTCAGGTAGAGGTTACATGT 58.535 40.000 2.69 2.69 31.91 3.21
3893 4604 7.406031 TTCTTCAGGTAGAGGTTACATGTAG 57.594 40.000 5.56 0.48 31.91 2.74
3894 4605 5.360144 TCTTCAGGTAGAGGTTACATGTAGC 59.640 44.000 10.99 10.99 30.44 3.58
3895 4606 3.958798 TCAGGTAGAGGTTACATGTAGCC 59.041 47.826 26.52 26.52 36.78 3.93
3896 4607 3.704566 CAGGTAGAGGTTACATGTAGCCA 59.295 47.826 32.53 15.40 38.69 4.75
3919 4630 2.726821 CCACGTAGGGTTACCTCTGTA 58.273 52.381 0.00 0.00 46.95 2.74
3946 4657 3.983344 GCAAAGCATTCGAAAGTTGATGT 59.017 39.130 0.00 0.00 0.00 3.06
3993 4705 8.385898 TGGGATATAAAGTAAAATAAGGCACG 57.614 34.615 0.00 0.00 0.00 5.34
4123 4851 1.228245 GCAGCAGGTCCCTGTCAAA 60.228 57.895 14.56 0.00 45.24 2.69
4125 4853 0.607489 CAGCAGGTCCCTGTCAAAGG 60.607 60.000 14.56 0.00 46.94 3.11
4199 4934 2.730672 CTGTCAAGCAGCCGTACGC 61.731 63.158 10.49 5.63 38.52 4.42
4236 4971 7.109501 TGCTCAATCTGCTAACCAACTTTATA 58.890 34.615 0.00 0.00 0.00 0.98
4289 5024 3.637911 ATTGCATGACCTACCGGTTAA 57.362 42.857 15.04 0.00 45.73 2.01
4298 5033 3.631250 ACCTACCGGTTAAGGATCGTAA 58.369 45.455 26.98 0.00 42.13 3.18
4299 5034 3.633986 ACCTACCGGTTAAGGATCGTAAG 59.366 47.826 26.98 7.93 42.13 2.34
4302 5037 1.539712 CCGGTTAAGGATCGTAAGGGC 60.540 57.143 0.00 0.00 38.47 5.19
4303 5038 1.137479 CGGTTAAGGATCGTAAGGGCA 59.863 52.381 0.00 0.00 38.47 5.36
4304 5039 2.419021 CGGTTAAGGATCGTAAGGGCAA 60.419 50.000 0.00 0.00 38.47 4.52
4329 5064 3.547746 GATTACGTATTTGCCCTTGGGA 58.452 45.455 10.36 0.00 0.00 4.37
4334 5069 1.208844 TATTTGCCCTTGGGACGGGA 61.209 55.000 10.36 0.00 44.90 5.14
4342 5077 0.035458 CTTGGGACGGGATGATAGGC 59.965 60.000 0.00 0.00 0.00 3.93
4351 5086 1.294780 GATGATAGGCGGAGGGCAG 59.705 63.158 0.00 0.00 46.16 4.85
4373 5108 0.609681 TGGTAAATTCACACCGGGCC 60.610 55.000 6.32 0.00 37.66 5.80
4407 5147 2.837591 GGGTCGGGTTAGGTTTAGGTTA 59.162 50.000 0.00 0.00 0.00 2.85
4408 5148 3.118629 GGGTCGGGTTAGGTTTAGGTTAG 60.119 52.174 0.00 0.00 0.00 2.34
4409 5149 3.118629 GGTCGGGTTAGGTTTAGGTTAGG 60.119 52.174 0.00 0.00 0.00 2.69
4410 5150 3.106827 TCGGGTTAGGTTTAGGTTAGGG 58.893 50.000 0.00 0.00 0.00 3.53
4411 5151 2.420547 CGGGTTAGGTTTAGGTTAGGGC 60.421 54.545 0.00 0.00 0.00 5.19
4412 5152 2.848694 GGGTTAGGTTTAGGTTAGGGCT 59.151 50.000 0.00 0.00 0.00 5.19
4413 5153 3.371273 GGGTTAGGTTTAGGTTAGGGCTG 60.371 52.174 0.00 0.00 0.00 4.85
4414 5154 3.276857 GTTAGGTTTAGGTTAGGGCTGC 58.723 50.000 0.00 0.00 0.00 5.25
4415 5155 0.252197 AGGTTTAGGTTAGGGCTGCG 59.748 55.000 0.00 0.00 0.00 5.18
4416 5156 0.746923 GGTTTAGGTTAGGGCTGCGG 60.747 60.000 0.00 0.00 0.00 5.69
4417 5157 0.035725 GTTTAGGTTAGGGCTGCGGT 60.036 55.000 0.00 0.00 0.00 5.68
4418 5158 0.694196 TTTAGGTTAGGGCTGCGGTT 59.306 50.000 0.00 0.00 0.00 4.44
4421 5161 2.566529 GTTAGGGCTGCGGTTTGC 59.433 61.111 0.00 0.00 46.70 3.68
4442 5182 3.417645 GCGTTCGGATTAAATCAAATCGC 59.582 43.478 0.00 0.00 36.84 4.58
4448 5188 2.842208 TTAAATCAAATCGCGGCAGG 57.158 45.000 6.13 0.00 0.00 4.85
4449 5189 0.380378 TAAATCAAATCGCGGCAGGC 59.620 50.000 6.13 0.00 38.69 4.85
4497 5242 1.592350 GCTGCACGCGAACTTATAAGC 60.592 52.381 15.93 6.32 0.00 3.09
4503 5250 4.668177 GCACGCGAACTTATAAGCAGAAAA 60.668 41.667 15.93 0.00 0.00 2.29
4513 5260 2.470057 AAGCAGAAAAACAAGGGGGA 57.530 45.000 0.00 0.00 0.00 4.81
4599 5346 3.064324 GCCAGCCACCACCACATC 61.064 66.667 0.00 0.00 0.00 3.06
4600 5347 2.361610 CCAGCCACCACCACATCC 60.362 66.667 0.00 0.00 0.00 3.51
4601 5348 2.361610 CAGCCACCACCACATCCC 60.362 66.667 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 5.488341 TCTAAATAAGCTGAGGGTCACAAC 58.512 41.667 0.00 0.00 0.00 3.32
49 50 5.755409 TCTAAATAAGCTGAGGGTCACAA 57.245 39.130 0.00 0.00 0.00 3.33
50 51 5.957771 ATCTAAATAAGCTGAGGGTCACA 57.042 39.130 0.00 0.00 0.00 3.58
139 149 8.826710 CCGATTTGTCTTTGCTATTTGATACTA 58.173 33.333 0.00 0.00 0.00 1.82
140 150 7.679638 GCCGATTTGTCTTTGCTATTTGATACT 60.680 37.037 0.00 0.00 0.00 2.12
141 151 6.414987 GCCGATTTGTCTTTGCTATTTGATAC 59.585 38.462 0.00 0.00 0.00 2.24
145 155 4.484236 TGCCGATTTGTCTTTGCTATTTG 58.516 39.130 0.00 0.00 0.00 2.32
242 252 5.734720 TGTCTGAAACAGTGGAAGGATATC 58.265 41.667 0.00 0.00 32.81 1.63
243 253 5.762179 TGTCTGAAACAGTGGAAGGATAT 57.238 39.130 0.00 0.00 32.81 1.63
244 254 5.560722 TTGTCTGAAACAGTGGAAGGATA 57.439 39.130 0.00 0.00 39.58 2.59
281 291 5.221244 CCATCGTCACATCTCATGGTAAGTA 60.221 44.000 0.00 0.00 31.01 2.24
323 333 9.019656 GCTATCAGGAAGAAGATAACTGAGATA 57.980 37.037 0.00 0.00 41.00 1.98
428 497 1.804151 CGTGCGTTTATCCCCCATATG 59.196 52.381 0.00 0.00 0.00 1.78
430 499 0.107081 CCGTGCGTTTATCCCCCATA 59.893 55.000 0.00 0.00 0.00 2.74
450 519 4.756135 CCACATTTTTGTCCAAATCCCTTG 59.244 41.667 0.00 0.00 34.52 3.61
480 549 3.008049 GGTACAATATGGCCCTCTTCGAT 59.992 47.826 0.00 0.00 0.00 3.59
498 567 1.412387 GACAACACCTCGTTCGGTAC 58.588 55.000 0.00 0.00 34.86 3.34
662 731 2.124819 CAGAGCAGCGAGGCCAAT 60.125 61.111 5.01 0.00 0.00 3.16
811 880 4.161295 CATCTTCCCCGAGCGCCA 62.161 66.667 2.29 0.00 0.00 5.69
848 920 1.427753 ACCTTTGGGTCCCCTGTTAAG 59.572 52.381 5.13 1.57 43.38 1.85
853 925 0.827507 CAACACCTTTGGGTCCCCTG 60.828 60.000 5.13 0.00 45.41 4.45
860 932 0.895559 GGCCTCTCAACACCTTTGGG 60.896 60.000 0.00 0.00 38.88 4.12
863 935 0.250338 GTCGGCCTCTCAACACCTTT 60.250 55.000 0.00 0.00 0.00 3.11
895 976 2.780010 AGCATATTTGGCTCTACTGGGT 59.220 45.455 0.00 0.00 36.81 4.51
934 1016 2.782222 GCCTGATCGGACGGCTACA 61.782 63.158 2.08 0.00 40.62 2.74
949 1031 2.822637 CCATATCACCCGGCAGCCT 61.823 63.158 10.54 0.00 0.00 4.58
960 1042 1.541310 GGGGATCGCCGTCCATATCA 61.541 60.000 13.74 0.00 40.17 2.15
997 1079 5.877564 ACTAGAAGCTTGCAGATAAAAGACC 59.122 40.000 2.10 0.00 0.00 3.85
1043 1127 1.541233 CGAGGCTGGCGGAATAGATTT 60.541 52.381 0.00 0.00 0.00 2.17
1057 1141 3.786586 GACGACGTCGACGAGGCT 61.787 66.667 41.52 21.67 43.02 4.58
1188 1277 2.510906 GGGACGGGACCATGGATG 59.489 66.667 21.47 7.24 0.00 3.51
1209 1298 2.880890 AGGGAATGCATATGTTTCGAGC 59.119 45.455 0.00 0.00 0.00 5.03
1212 1301 4.389374 ACCTAGGGAATGCATATGTTTCG 58.611 43.478 14.81 0.00 0.00 3.46
1263 1352 1.132640 GAACATGGACAAGCGTCGC 59.867 57.895 9.80 9.80 43.61 5.19
1264 1353 0.670546 AGGAACATGGACAAGCGTCG 60.671 55.000 0.00 0.00 43.61 5.12
1276 1365 4.814294 GGGCGACGCGAGGAACAT 62.814 66.667 15.93 0.00 0.00 2.71
1439 1528 2.745884 CGCAGATTTCCCGTGGCA 60.746 61.111 0.00 0.00 0.00 4.92
1445 1534 1.017387 GATGACACCGCAGATTTCCC 58.983 55.000 0.00 0.00 0.00 3.97
1446 1535 1.667724 CAGATGACACCGCAGATTTCC 59.332 52.381 0.00 0.00 0.00 3.13
1448 1537 2.479566 ACAGATGACACCGCAGATTT 57.520 45.000 0.00 0.00 0.00 2.17
1593 1692 4.166725 TCCAGCCTTCCAGATCAATAATGT 59.833 41.667 0.00 0.00 0.00 2.71
2017 2144 7.387948 ACAACTACGAAAACAGATTGAATAGCT 59.612 33.333 0.00 0.00 0.00 3.32
2018 2145 7.478667 CACAACTACGAAAACAGATTGAATAGC 59.521 37.037 0.00 0.00 0.00 2.97
2096 2231 2.540101 CTGGTTGACGAGTTGAAGTCAC 59.460 50.000 0.49 0.00 45.71 3.67
2097 2232 2.429250 TCTGGTTGACGAGTTGAAGTCA 59.571 45.455 0.49 0.00 44.57 3.41
2098 2233 3.093717 TCTGGTTGACGAGTTGAAGTC 57.906 47.619 0.00 0.00 37.85 3.01
2135 2270 7.521423 CGAAACATTTCCAACCAGATCAGTTAA 60.521 37.037 0.00 0.00 33.68 2.01
2251 2386 6.166279 TGTATGACAGCAGGAGAACTAAAAG 58.834 40.000 0.00 0.00 0.00 2.27
2364 2514 4.631813 AGAGTCTCGCCAATCATACAAAAC 59.368 41.667 0.00 0.00 0.00 2.43
2365 2515 4.832248 AGAGTCTCGCCAATCATACAAAA 58.168 39.130 0.00 0.00 0.00 2.44
2366 2516 4.471904 AGAGTCTCGCCAATCATACAAA 57.528 40.909 0.00 0.00 0.00 2.83
2367 2517 5.592104 TTAGAGTCTCGCCAATCATACAA 57.408 39.130 0.00 0.00 0.00 2.41
2368 2518 5.301805 TCATTAGAGTCTCGCCAATCATACA 59.698 40.000 0.00 0.00 0.00 2.29
2369 2519 5.631512 GTCATTAGAGTCTCGCCAATCATAC 59.368 44.000 0.00 0.00 0.00 2.39
2370 2520 5.301805 TGTCATTAGAGTCTCGCCAATCATA 59.698 40.000 0.00 0.00 0.00 2.15
2447 2597 4.503714 TCAGGGTCCCTTCAAACATATC 57.496 45.455 8.08 0.00 0.00 1.63
2448 2598 4.478317 TCATCAGGGTCCCTTCAAACATAT 59.522 41.667 8.08 0.00 0.00 1.78
2452 2602 2.224769 TGTCATCAGGGTCCCTTCAAAC 60.225 50.000 8.08 5.53 0.00 2.93
2456 2606 1.280457 ACTGTCATCAGGGTCCCTTC 58.720 55.000 8.08 0.00 45.14 3.46
2494 2674 3.326297 TGGTTTCAAATTCAACCCCATCC 59.674 43.478 10.26 0.00 41.73 3.51
2514 2694 9.345517 CTCAACATTGACAAAAATACAGTATGG 57.654 33.333 0.00 0.00 34.75 2.74
2573 2928 4.072131 GTGACAAGAACAGATTGCCCTTA 58.928 43.478 0.00 0.00 0.00 2.69
2574 2929 2.887152 GTGACAAGAACAGATTGCCCTT 59.113 45.455 0.00 0.00 0.00 3.95
2605 2960 8.934507 ACAACTAGTAATTCATCAAGCTCTAC 57.065 34.615 0.00 0.00 0.00 2.59
2607 2962 9.944376 TTTACAACTAGTAATTCATCAAGCTCT 57.056 29.630 0.00 0.00 42.03 4.09
2656 3015 1.133025 CCCGGCATAGAAGCAAACAAG 59.867 52.381 0.00 0.00 35.83 3.16
2680 3039 0.920271 TAATACCCCCACACCCACCC 60.920 60.000 0.00 0.00 0.00 4.61
2683 3042 0.993470 GTGTAATACCCCCACACCCA 59.007 55.000 0.00 0.00 37.24 4.51
2684 3043 0.107557 CGTGTAATACCCCCACACCC 60.108 60.000 0.00 0.00 39.49 4.61
2685 3044 0.614812 ACGTGTAATACCCCCACACC 59.385 55.000 0.00 0.00 39.49 4.16
2686 3045 3.055891 ACTTACGTGTAATACCCCCACAC 60.056 47.826 0.00 0.00 39.32 3.82
2687 3046 3.172339 ACTTACGTGTAATACCCCCACA 58.828 45.455 0.00 0.00 0.00 4.17
2688 3047 3.893326 ACTTACGTGTAATACCCCCAC 57.107 47.619 0.00 0.00 0.00 4.61
2689 3048 3.619487 GCAACTTACGTGTAATACCCCCA 60.619 47.826 0.00 0.00 0.00 4.96
2690 3049 2.938451 GCAACTTACGTGTAATACCCCC 59.062 50.000 0.00 0.00 0.00 5.40
2691 3050 2.938451 GGCAACTTACGTGTAATACCCC 59.062 50.000 0.00 0.00 0.00 4.95
2692 3051 3.598299 TGGCAACTTACGTGTAATACCC 58.402 45.455 0.00 0.00 37.61 3.69
2693 3052 3.063045 GCTGGCAACTTACGTGTAATACC 59.937 47.826 0.00 0.00 37.61 2.73
2694 3053 3.680937 TGCTGGCAACTTACGTGTAATAC 59.319 43.478 0.00 0.00 37.61 1.89
2695 3054 3.927854 TGCTGGCAACTTACGTGTAATA 58.072 40.909 0.00 0.00 37.61 0.98
2696 3055 2.742053 CTGCTGGCAACTTACGTGTAAT 59.258 45.455 0.00 0.00 37.61 1.89
2697 3056 2.139917 CTGCTGGCAACTTACGTGTAA 58.860 47.619 0.00 0.00 37.61 2.41
2698 3057 1.069513 ACTGCTGGCAACTTACGTGTA 59.930 47.619 0.00 0.00 37.61 2.90
2715 3346 5.971202 ACTTTATTTGTCGAACTTGCAACTG 59.029 36.000 0.00 0.00 0.00 3.16
2716 3347 5.971202 CACTTTATTTGTCGAACTTGCAACT 59.029 36.000 0.00 0.00 0.00 3.16
2728 3359 7.558137 CAAGTTGTTGATGCACTTTATTTGTC 58.442 34.615 0.00 0.00 35.46 3.18
2840 3476 3.254166 ACTGCTAATGGTTGCACTCAAAG 59.746 43.478 0.00 0.00 35.20 2.77
2842 3478 2.862541 ACTGCTAATGGTTGCACTCAA 58.137 42.857 0.00 0.00 35.20 3.02
2875 3511 1.333931 CTGCAGCATTGGATGTAGCAG 59.666 52.381 0.00 16.29 45.87 4.24
2903 3539 7.829211 TCCCTAAGAGAAACAGATTGGTTAATG 59.171 37.037 0.00 0.00 0.00 1.90
2911 3547 5.707066 AGCATCCCTAAGAGAAACAGATT 57.293 39.130 0.00 0.00 0.00 2.40
2912 3548 5.707066 AAGCATCCCTAAGAGAAACAGAT 57.293 39.130 0.00 0.00 0.00 2.90
2955 3591 8.805175 CAGAATCTAGTCATCTTAGGATGTCAT 58.195 37.037 13.92 4.97 46.74 3.06
2961 3597 7.201866 GCTTGTCAGAATCTAGTCATCTTAGGA 60.202 40.741 0.00 0.00 0.00 2.94
3011 3648 1.153369 GGCTGTCGGATGCTGCTAA 60.153 57.895 0.00 0.00 0.00 3.09
3329 3966 1.803334 AACCGTATTTCTTGCGCTCA 58.197 45.000 9.73 0.00 31.38 4.26
3341 3978 5.684626 CGTCTATCGCTTCTTAAAACCGTAT 59.315 40.000 0.00 0.00 0.00 3.06
3366 4003 1.066858 TGGCCAAGAATCTGTCTCGTC 60.067 52.381 0.61 0.00 34.56 4.20
3372 4009 0.329596 GGACCTGGCCAAGAATCTGT 59.670 55.000 8.77 0.00 0.00 3.41
3374 4011 0.915364 GAGGACCTGGCCAAGAATCT 59.085 55.000 8.77 1.45 0.00 2.40
3376 4013 0.622665 CAGAGGACCTGGCCAAGAAT 59.377 55.000 8.77 0.00 39.23 2.40
3385 4022 0.549950 AATGATGCCCAGAGGACCTG 59.450 55.000 0.00 0.00 42.55 4.00
3386 4023 1.302907 AAATGATGCCCAGAGGACCT 58.697 50.000 0.00 0.00 33.47 3.85
3388 4025 2.686915 CAGAAAATGATGCCCAGAGGAC 59.313 50.000 0.00 0.00 33.47 3.85
3390 4027 1.407979 GCAGAAAATGATGCCCAGAGG 59.592 52.381 0.00 0.00 36.41 3.69
3391 4028 2.099263 CAGCAGAAAATGATGCCCAGAG 59.901 50.000 0.00 0.00 43.60 3.35
3392 4029 2.097036 CAGCAGAAAATGATGCCCAGA 58.903 47.619 0.00 0.00 43.60 3.86
3393 4030 2.579207 CAGCAGAAAATGATGCCCAG 57.421 50.000 0.00 0.00 43.60 4.45
3399 4036 2.557924 TCGGCAAACAGCAGAAAATGAT 59.442 40.909 0.00 0.00 44.54 2.45
3431 4106 7.065324 CAGTACCAAACCATAACACGAATACAT 59.935 37.037 0.00 0.00 0.00 2.29
3439 4114 6.646267 TCCTATCAGTACCAAACCATAACAC 58.354 40.000 0.00 0.00 0.00 3.32
3468 4151 1.017387 GATCAAGATCACCGGGTTGC 58.983 55.000 6.32 0.00 37.74 4.17
3475 4158 8.723942 AACAGTTATTACAGATCAAGATCACC 57.276 34.615 12.21 0.00 40.22 4.02
3537 4228 1.137404 GCACCGCATAAGCAGTTGG 59.863 57.895 0.00 0.00 42.27 3.77
3555 4246 2.143122 ACAAACAGTCACGGCACATAG 58.857 47.619 0.00 0.00 0.00 2.23
3560 4254 1.135546 CAACAACAAACAGTCACGGCA 60.136 47.619 0.00 0.00 0.00 5.69
3619 4313 0.108585 AACGGCCAAGACAGTGACAT 59.891 50.000 2.24 0.00 0.00 3.06
3625 4319 1.283793 CTTGCAACGGCCAAGACAG 59.716 57.895 2.24 0.00 40.13 3.51
3659 4353 5.048083 TGCTTCATTTCCAGATAACAACCAC 60.048 40.000 0.00 0.00 0.00 4.16
3705 4399 0.378610 GGCTCTATGAAAAGCGCACC 59.621 55.000 11.47 0.00 39.47 5.01
3709 4406 0.811616 AGCCGGCTCTATGAAAAGCG 60.812 55.000 27.08 0.00 39.47 4.68
3725 4422 0.251354 TGATCAGAGCACTTCCAGCC 59.749 55.000 0.00 0.00 0.00 4.85
3738 4441 1.344458 GCAGACGTGACACTGATCAG 58.656 55.000 21.37 21.37 36.38 2.90
3771 4474 2.815308 CTACTAGTGCCCTGCCCG 59.185 66.667 5.39 0.00 0.00 6.13
3784 4487 1.032114 GGAAATGCCCAAGCGCTACT 61.032 55.000 12.05 0.00 44.31 2.57
3794 4497 2.149973 ACAGGATTCTGGAAATGCCC 57.850 50.000 5.84 0.00 44.99 5.36
3826 4529 2.670414 CGTGAAGCATCTTCAGAGTTCC 59.330 50.000 9.29 0.00 0.00 3.62
3879 4590 2.092914 GGCTTGGCTACATGTAACCTCT 60.093 50.000 22.64 0.00 0.00 3.69
3890 4601 1.153429 CCCTACGTGGCTTGGCTAC 60.153 63.158 0.00 0.00 36.68 3.58
3891 4602 1.196104 AACCCTACGTGGCTTGGCTA 61.196 55.000 0.00 0.00 0.00 3.93
3893 4604 1.022982 GTAACCCTACGTGGCTTGGC 61.023 60.000 0.00 0.00 0.00 4.52
3894 4605 0.392060 GGTAACCCTACGTGGCTTGG 60.392 60.000 0.00 0.00 0.00 3.61
3895 4606 0.611714 AGGTAACCCTACGTGGCTTG 59.388 55.000 0.00 0.00 40.19 4.01
3896 4607 0.900421 GAGGTAACCCTACGTGGCTT 59.100 55.000 0.00 0.00 42.86 4.35
3919 4630 2.362077 ACTTTCGAATGCTTTGCTGGTT 59.638 40.909 10.71 0.00 0.00 3.67
3993 4705 5.091431 CCTGAATTTGATTCGCTGACTTTC 58.909 41.667 0.00 0.00 42.15 2.62
4123 4851 1.229658 CTGGACAGGAACTCCCCCT 60.230 63.158 0.00 0.00 34.60 4.79
4125 4853 0.903236 GTACTGGACAGGAACTCCCC 59.097 60.000 4.14 0.00 34.60 4.81
4126 4854 0.531200 CGTACTGGACAGGAACTCCC 59.469 60.000 4.14 0.00 34.60 4.30
4192 4920 0.108329 AAAGTCCATGAGGCGTACGG 60.108 55.000 18.39 0.00 33.74 4.02
4193 4921 0.999406 CAAAGTCCATGAGGCGTACG 59.001 55.000 11.84 11.84 33.74 3.67
4199 4934 3.377485 CAGATTGAGCAAAGTCCATGAGG 59.623 47.826 0.00 0.00 0.00 3.86
4289 5024 0.108329 CGTGTTGCCCTTACGATCCT 60.108 55.000 0.00 0.00 40.01 3.24
4329 5064 1.908793 CCTCCGCCTATCATCCCGT 60.909 63.158 0.00 0.00 0.00 5.28
4334 5069 2.888447 GCTGCCCTCCGCCTATCAT 61.888 63.158 0.00 0.00 36.24 2.45
4342 5077 2.270874 ATTTACCAGGCTGCCCTCCG 62.271 60.000 16.57 2.57 40.33 4.63
4351 5086 0.808755 CCGGTGTGAATTTACCAGGC 59.191 55.000 0.00 0.00 36.76 4.85
4373 5108 2.440247 GACCCCAAATCCAGGCCG 60.440 66.667 0.00 0.00 0.00 6.13
4408 5148 4.700365 GAACGCAAACCGCAGCCC 62.700 66.667 0.00 0.00 42.60 5.19
4411 5151 2.182614 AATCCGAACGCAAACCGCAG 62.183 55.000 0.00 0.00 42.60 5.18
4412 5152 0.949588 TAATCCGAACGCAAACCGCA 60.950 50.000 0.00 0.00 42.60 5.69
4413 5153 0.166379 TTAATCCGAACGCAAACCGC 59.834 50.000 0.00 0.00 41.76 5.68
4414 5154 2.598000 TTTAATCCGAACGCAAACCG 57.402 45.000 0.00 0.00 44.21 4.44
4415 5155 4.086199 TGATTTAATCCGAACGCAAACC 57.914 40.909 2.22 0.00 0.00 3.27
4416 5156 6.504180 CGATTTGATTTAATCCGAACGCAAAC 60.504 38.462 2.22 0.00 32.12 2.93
4417 5157 5.509972 CGATTTGATTTAATCCGAACGCAAA 59.490 36.000 2.22 0.00 32.12 3.68
4418 5158 5.025190 CGATTTGATTTAATCCGAACGCAA 58.975 37.500 2.22 0.00 32.12 4.85
4421 5161 3.653113 CGCGATTTGATTTAATCCGAACG 59.347 43.478 0.00 5.22 33.73 3.95
4448 5188 4.965858 CCGAGCCGAGATCGACGC 62.966 72.222 12.12 0.00 44.55 5.19
4449 5189 3.574445 ACCGAGCCGAGATCGACG 61.574 66.667 12.12 6.63 44.55 5.12
4450 5190 2.024871 CACCGAGCCGAGATCGAC 59.975 66.667 12.12 0.00 44.55 4.20
4451 5191 3.209812 CCACCGAGCCGAGATCGA 61.210 66.667 12.12 0.00 44.55 3.59
4475 5220 0.808453 TATAAGTTCGCGTGCAGCCC 60.808 55.000 5.77 0.00 44.76 5.19
4497 5242 5.351948 TCTTTTTCCCCCTTGTTTTTCTG 57.648 39.130 0.00 0.00 0.00 3.02
4503 5250 5.625886 CGTTTCTTTCTTTTTCCCCCTTGTT 60.626 40.000 0.00 0.00 0.00 2.83
4513 5260 5.052633 CGTCGATTTGCGTTTCTTTCTTTTT 60.053 36.000 0.00 0.00 41.80 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.