AutoCloner

Multiple sequence alignment - TraesCS2A01G491600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G491600	chr2A	100.000	2918	0	0	1	2918	724396907	724399824	0.000000e+00	5389.0
1	TraesCS2A01G491600	chr2A	91.379	986	75	5	932	1914	724380563	724381541	0.000000e+00	1341.0
2	TraesCS2A01G491600	chr2A	82.983	952	148	9	973	1912	724417750	724416801	0.000000e+00	848.0
3	TraesCS2A01G491600	chr2A	93.069	101	6	1	762	862	724380147	724380246	2.340000e-31	147.0
4	TraesCS2A01G491600	chr2D	94.636	1305	62	4	740	2040	590080816	590082116	0.000000e+00	2015.0
5	TraesCS2A01G491600	chr2D	91.843	1042	60	11	893	1914	590074869	590075905	0.000000e+00	1430.0
6	TraesCS2A01G491600	chr2D	93.987	765	36	3	1	755	590079530	590080294	0.000000e+00	1149.0
7	TraesCS2A01G491600	chr2D	84.553	984	131	17	973	1948	590086988	590086018	0.000000e+00	955.0
8	TraesCS2A01G491600	chr2D	80.208	1152	179	29	824	1948	590092111	590090982	0.000000e+00	819.0
9	TraesCS2A01G491600	chr2D	83.614	891	113	13	2050	2918	590082803	590083682	0.000000e+00	806.0
10	TraesCS2A01G491600	chr2D	88.889	162	12	4	737	898	590074460	590074615	8.250000e-46	195.0
11	TraesCS2A01G491600	chr2D	93.443	61	4	0	837	897	590074193	590074253	1.110000e-14	91.6
12	TraesCS2A01G491600	chr2B	93.651	1071	55	5	962	2028	714502156	714503217	0.000000e+00	1589.0
13	TraesCS2A01G491600	chr2B	81.684	950	157	9	973	1918	714519328	714518392	0.000000e+00	774.0
14	TraesCS2A01G491600	chr2B	79.517	1118	169	34	824	1920	714523502	714522424	0.000000e+00	741.0
15	TraesCS2A01G491600	chr2B	91.065	291	17	3	693	975	714501848	714502137	4.560000e-103	385.0
16	TraesCS2A01G491600	chr3D	82.609	575	98	2	2085	2658	601004456	601003883	9.330000e-140	507.0
17	TraesCS2A01G491600	chr3D	91.358	162	14	0	1	162	169127345	169127184	3.780000e-54	222.0
18	TraesCS2A01G491600	chr1A	82.112	587	102	3	2075	2658	447639475	447640061	1.560000e-137	499.0
19	TraesCS2A01G491600	chr7D	81.788	593	102	5	2072	2660	595869072	595869662	2.610000e-135	492.0
20	TraesCS2A01G491600	chr7D	81.313	594	105	6	2069	2658	251354823	251355414	7.320000e-131	477.0
21	TraesCS2A01G491600	chr7D	92.453	159	12	0	1	159	40681121	40681279	8.140000e-56	228.0
22	TraesCS2A01G491600	chr6A	82.168	572	98	4	2095	2663	592431859	592431289	3.380000e-134	488.0
23	TraesCS2A01G491600	chr3B	81.897	580	99	6	2085	2660	586858720	586858143	4.370000e-133	484.0
24	TraesCS2A01G491600	chr6B	81.678	584	102	5	2075	2656	279005967	279006547	5.660000e-132	481.0
25	TraesCS2A01G491600	chr4A	80.676	621	110	9	2075	2688	162419792	162420409	9.460000e-130	473.0
26	TraesCS2A01G491600	chr4A	91.358	162	14	0	1	162	10541265	10541104	3.780000e-54	222.0
27	TraesCS2A01G491600	chr1B	93.210	162	11	0	1	162	265305711	265305872	3.760000e-59	239.0
28	TraesCS2A01G491600	chr7B	92.593	162	12	0	1	162	448912255	448912094	1.750000e-57	233.0
29	TraesCS2A01G491600	chr6D	92.593	162	10	2	1	162	394288270	394288429	6.290000e-57	231.0
30	TraesCS2A01G491600	chr5B	91.358	162	14	0	1	162	501053321	501053160	3.780000e-54	222.0
31	TraesCS2A01G491600	chr4D	90.741	162	15	0	1	162	458675441	458675602	1.760000e-52	217.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G491600	chr2A	724396907	724399824	2917	False	5389.000000	5389	100.000000	1	2918	1	chr2A.!!$F1	2917
1	TraesCS2A01G491600	chr2A	724416801	724417750	949	True	848.000000	848	82.983000	973	1912	1	chr2A.!!$R1	939
2	TraesCS2A01G491600	chr2A	724380147	724381541	1394	False	744.000000	1341	92.224000	762	1914	2	chr2A.!!$F2	1152
3	TraesCS2A01G491600	chr2D	590074193	590083682	9489	False	947.766667	2015	91.068667	1	2918	6	chr2D.!!$F1	2917
4	TraesCS2A01G491600	chr2D	590086018	590092111	6093	True	887.000000	955	82.380500	824	1948	2	chr2D.!!$R1	1124
5	TraesCS2A01G491600	chr2B	714501848	714503217	1369	False	987.000000	1589	92.358000	693	2028	2	chr2B.!!$F1	1335
6	TraesCS2A01G491600	chr2B	714518392	714523502	5110	True	757.500000	774	80.600500	824	1920	2	chr2B.!!$R1	1096
7	TraesCS2A01G491600	chr3D	601003883	601004456	573	True	507.000000	507	82.609000	2085	2658	1	chr3D.!!$R2	573
8	TraesCS2A01G491600	chr1A	447639475	447640061	586	False	499.000000	499	82.112000	2075	2658	1	chr1A.!!$F1	583
9	TraesCS2A01G491600	chr7D	595869072	595869662	590	False	492.000000	492	81.788000	2072	2660	1	chr7D.!!$F3	588
10	TraesCS2A01G491600	chr7D	251354823	251355414	591	False	477.000000	477	81.313000	2069	2658	1	chr7D.!!$F2	589
11	TraesCS2A01G491600	chr6A	592431289	592431859	570	True	488.000000	488	82.168000	2095	2663	1	chr6A.!!$R1	568
12	TraesCS2A01G491600	chr3B	586858143	586858720	577	True	484.000000	484	81.897000	2085	2660	1	chr3B.!!$R1	575
13	TraesCS2A01G491600	chr6B	279005967	279006547	580	False	481.000000	481	81.678000	2075	2656	1	chr6B.!!$F1	581
14	TraesCS2A01G491600	chr4A	162419792	162420409	617	False	473.000000	473	80.676000	2075	2688	1	chr4A.!!$F1	613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
346	5684	0.036952	TGAAGAGAGAAAGCAGCCGG	60.037	55.0	0.0	0.0	0.0	6.13	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2113	14686	0.958382	TGGTGTTCGTTATGCTGCCC	60.958	55.0	0.0	0.0	0.0	5.36	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
96	5434	6.650807	TGAATGCTATAGAAGAAAATAGCCCG	59.349	38.462	3.21	0.00	46.55	6.13
121	5459	4.816925	AGTTGACAACCAAGCTAGAAGAAC	59.183	41.667	14.72	0.00	35.03	3.01
179	5517	7.793948	ATGTCAAGGTAAAGAGGTAGTAGTT	57.206	36.000	0.00	0.00	0.00	2.24
209	5547	1.194772	GTTGTTCCACGAGCTTAGTGC	59.805	52.381	15.29	5.47	43.29	4.40
260	5598	5.632764	CAGTTAGCTATTCATCATCCGACAG	59.367	44.000	0.00	0.00	0.00	3.51
318	5656	0.669625	GAAGCTTGCGAACCGGTACT	60.670	55.000	8.00	0.00	0.00	2.73
336	5674	2.228059	ACTTCCGACGTTGAAGAGAGA	58.772	47.619	26.16	4.77	41.38	3.10
346	5684	0.036952	TGAAGAGAGAAAGCAGCCGG	60.037	55.000	0.00	0.00	0.00	6.13
363	5701	2.301505	GGCACACGATCTTCATCCG	58.698	57.895	0.00	0.00	0.00	4.18
365	5703	1.539065	GGCACACGATCTTCATCCGAT	60.539	52.381	0.00	0.00	0.00	4.18
366	5704	1.524355	GCACACGATCTTCATCCGATG	59.476	52.381	1.55	1.55	0.00	3.84
382	5720	0.451783	GATGGCCGTCATTCAACCAC	59.548	55.000	20.55	0.00	35.97	4.16
413	5751	4.151689	GCGCCCCTTTTTCACTTTTTATTC	59.848	41.667	0.00	0.00	0.00	1.75
419	5757	9.476202	CCCCTTTTTCACTTTTTATTCTACTTG	57.524	33.333	0.00	0.00	0.00	3.16
476	5814	7.831753	TGGCTATATATAAAGCAGAGAGTGAC	58.168	38.462	9.23	0.00	40.61	3.67
477	5815	7.671819	TGGCTATATATAAAGCAGAGAGTGACT	59.328	37.037	9.23	0.00	40.61	3.41
562	5900	1.692148	GCGAATTGTGGCGATGACGA	61.692	55.000	0.00	0.00	42.66	4.20
578	5916	1.452108	CGAAGGCCTGATTCCCACC	60.452	63.158	5.69	0.00	0.00	4.61
579	5917	1.915078	CGAAGGCCTGATTCCCACCT	61.915	60.000	5.69	0.00	0.00	4.00
584	5922	1.746615	CCTGATTCCCACCTGCGTG	60.747	63.158	0.00	0.00	39.91	5.34
620	5958	2.735237	GGGAATCCCTAGCCGTCG	59.265	66.667	11.95	0.00	41.34	5.12
640	5988	2.671177	CGCACCAAGCTTCCACTCG	61.671	63.158	0.00	0.00	42.61	4.18
645	5993	2.430921	AAGCTTCCACTCGTCGCG	60.431	61.111	0.00	0.00	0.00	5.87
663	6011	2.437359	GCCGCCAGAGCTCATTGT	60.437	61.111	17.77	0.00	36.60	2.71
693	6041	9.582431	TGTGCAGAGTAGTATTACTATTTTCAC	57.418	33.333	6.82	11.08	40.21	3.18
789	6674	2.893489	AGTGGTTTCTGCAATTTCCTCC	59.107	45.455	0.00	0.00	0.00	4.30
790	6675	2.627699	GTGGTTTCTGCAATTTCCTCCA	59.372	45.455	0.00	0.00	0.00	3.86
881	6772	4.318831	CGTTCCTTTTTCAACTCTTCCTCG	60.319	45.833	0.00	0.00	0.00	4.63
898	7021	3.890674	GGTTGACCGGTGAGCATC	58.109	61.111	14.63	2.68	0.00	3.91
938	7076	2.268298	CCAACGTACAAATCTCCTCGG	58.732	52.381	0.00	0.00	0.00	4.63
963	7101	2.679059	CGTCAGGCAGTTCATCCTCAAT	60.679	50.000	0.00	0.00	0.00	2.57
1024	7201	0.321021	TGCCAAAACCACATCATGCC	59.679	50.000	0.00	0.00	0.00	4.40
1123	7300	2.742372	CCGCCTTCCTTGACCACG	60.742	66.667	0.00	0.00	0.00	4.94
1210	7387	4.116328	CCGACTTCTCGAGCGCCA	62.116	66.667	7.81	0.00	43.06	5.69
1266	13149	2.035961	GCAAGACGGTATGAGGCTCATA	59.964	50.000	28.78	28.78	38.26	2.15
1319	13205	1.801913	CCGTCGGCTTCGTCAAGAG	60.802	63.158	0.00	0.00	35.06	2.85
1322	13208	0.733223	GTCGGCTTCGTCAAGAGGAC	60.733	60.000	0.00	0.00	43.36	3.85
1518	13407	3.473647	CTGATGGGCGGGCTCTCA	61.474	66.667	0.26	4.15	0.00	3.27
1539	13428	4.459089	GTGCTCTCCGTCCAGGGC	62.459	72.222	0.00	0.00	41.52	5.19
1692	13581	0.193574	TGGTGAGGAGAAAGGAGGGT	59.806	55.000	0.00	0.00	0.00	4.34
1767	13656	0.447801	GGGTTGCTCTTGTGTATGCG	59.552	55.000	0.00	0.00	0.00	4.73
1787	13676	2.512515	GAGGAGCATGGCGGTGTC	60.513	66.667	0.00	0.00	0.00	3.67
1821	13710	1.001048	GCTGTGCATGCTTTTCTGTCA	60.001	47.619	20.33	4.61	0.00	3.58
1860	13749	0.957395	CTCTGATGGCAGCAACGGTT	60.957	55.000	6.97	0.00	42.01	4.44
1977	13869	7.869429	CCTTCATCCAAAAGTGATTATAATGCC	59.131	37.037	1.78	0.00	0.00	4.40
2029	13921	6.183360	GCGACAATGTATACAAGTCGTTGTTA	60.183	38.462	36.97	9.01	45.00	2.41
2113	14686	9.713713	ACATCTGATCTATTCATCTTCAATCAG	57.286	33.333	0.00	0.00	39.82	2.90
2194	14767	2.604855	CGACGACTACAAGCACTGAAGT	60.605	50.000	0.00	0.00	0.00	3.01
2229	14802	3.140225	GACGTCATCGCCCCTCCTC	62.140	68.421	11.55	0.00	41.18	3.71
2297	14871	2.772515	GGTGCTAAGACCCAATAGGACT	59.227	50.000	4.80	0.00	43.00	3.85
2307	14881	3.391296	ACCCAATAGGACTAACGCATCAT	59.609	43.478	0.00	0.00	39.89	2.45
2345	14919	6.512903	CGCCGTTGAAGAGTAGTATAGATCAA	60.513	42.308	0.00	0.00	0.00	2.57
2388	14963	5.971792	CACATGAACATAGACGAACTACGAT	59.028	40.000	0.00	0.00	45.77	3.73
2412	14987	1.988293	TCCGAGCAAATCCACCAAAA	58.012	45.000	0.00	0.00	0.00	2.44
2431	15006	4.696479	AAAACAGATCCGCCAGAGATAT	57.304	40.909	0.00	0.00	0.00	1.63
2446	15021	4.009798	GAGATATATCTCCACACGCTCG	57.990	50.000	26.26	0.00	45.88	5.03
2487	15062	0.918983	CCAAGATGGGGGCTAGACAA	59.081	55.000	0.00	0.00	32.67	3.18
2527	15102	3.011517	AGGAGCCGCCACCATCTT	61.012	61.111	6.92	0.00	40.02	2.40
2541	15116	4.103785	CCACCATCTTATCTTCCTGACCAT	59.896	45.833	0.00	0.00	0.00	3.55
2546	15121	6.465464	CCATCTTATCTTCCTGACCATGACAT	60.465	42.308	0.00	0.00	0.00	3.06
2591	15166	2.572104	ACATCTAAAAACGGAGCCCTCT	59.428	45.455	0.00	0.00	0.00	3.69
2691	15270	1.886542	GGTGCAAAGAAACCCTAGTGG	59.113	52.381	0.00	0.00	41.37	4.00
2746	15343	2.897969	TGTAGAAGGACACAGAACTCCC	59.102	50.000	0.00	0.00	0.00	4.30
2801	15398	9.688592	TTTTTGCATTTTCTCAACAATTTGTTT	57.311	22.222	12.02	0.00	38.77	2.83
2803	15400	9.688592	TTTGCATTTTCTCAACAATTTGTTTTT	57.311	22.222	12.02	0.00	38.77	1.94
2862	15459	2.029110	GGTACAAGCCACGTAACTACCA	60.029	50.000	0.00	0.00	0.00	3.25
2871	15468	4.751060	CCACGTAACTACCAAGCTATCAA	58.249	43.478	0.00	0.00	0.00	2.57
2878	15475	8.378421	CGTAACTACCAAGCTATCAAAACTAAC	58.622	37.037	0.00	0.00	0.00	2.34
2881	15478	8.685838	ACTACCAAGCTATCAAAACTAACAAA	57.314	30.769	0.00	0.00	0.00	2.83
2910	15507	4.101942	CAAACGCTAGTCTTTGCACAAAA	58.898	39.130	0.00	0.00	0.00	2.44

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
10	5348	6.423905	GCATGGTTCTCTTGCGTATAATCTAA	59.576	38.462	0.00	0.00	36.91	2.10
20	5358	1.243342	TTGGGCATGGTTCTCTTGCG	61.243	55.000	0.00	0.00	44.56	4.85
82	5420	3.374367	GTCAACTCCGGGCTATTTTCTTC	59.626	47.826	0.00	0.00	0.00	2.87
96	5434	3.402628	TCTAGCTTGGTTGTCAACTCC	57.597	47.619	15.17	0.53	0.00	3.85
138	5476	6.940298	CCTTGACATTTACCTCTTCTTTACCA	59.060	38.462	0.00	0.00	0.00	3.25
147	5485	6.272558	ACCTCTTTACCTTGACATTTACCTCT	59.727	38.462	0.00	0.00	0.00	3.69
179	5517	0.665835	GTGGAACAACATCAACGCCA	59.334	50.000	0.00	0.00	44.16	5.69
260	5598	1.535896	TGATCTAGCGGCTACGATGTC	59.464	52.381	19.63	11.80	44.60	3.06
318	5656	3.639538	CTTTCTCTCTTCAACGTCGGAA	58.360	45.455	0.00	0.00	0.00	4.30
326	5664	1.609061	CCGGCTGCTTTCTCTCTTCAA	60.609	52.381	0.00	0.00	0.00	2.69
336	5674	4.927782	TCGTGTGCCGGCTGCTTT	62.928	61.111	29.70	0.00	42.00	3.51
346	5684	1.524355	CATCGGATGAAGATCGTGTGC	59.476	52.381	12.67	0.00	0.00	4.57
355	5693	0.250038	ATGACGGCCATCGGATGAAG	60.250	55.000	19.30	11.62	44.45	3.02
363	5701	0.451783	GTGGTTGAATGACGGCCATC	59.548	55.000	2.24	0.00	33.53	3.51
365	5703	0.687920	TAGTGGTTGAATGACGGCCA	59.312	50.000	2.24	0.00	0.00	5.36
366	5704	1.369625	CTAGTGGTTGAATGACGGCC	58.630	55.000	0.00	0.00	0.00	6.13
413	5751	9.178758	AGGTGAAAGGAAAATAATAGCAAGTAG	57.821	33.333	0.00	0.00	0.00	2.57
419	5757	8.184848	GTCTGAAGGTGAAAGGAAAATAATAGC	58.815	37.037	0.00	0.00	0.00	2.97
562	5900	1.693640	CAGGTGGGAATCAGGCCTT	59.306	57.895	0.00	0.00	0.00	4.35
645	5993	3.207669	CAATGAGCTCTGGCGGCC	61.208	66.667	16.19	13.32	44.37	6.13
660	6008	1.037493	ACTACTCTGCACACGGACAA	58.963	50.000	0.00	0.00	0.00	3.18
663	6011	4.267536	AGTAATACTACTCTGCACACGGA	58.732	43.478	0.00	0.00	32.61	4.69
693	6041	1.072331	ACTAGTTGCAACCAGGTCCAG	59.928	52.381	25.50	14.07	0.00	3.86
758	6643	2.224314	GCAGAAACCACTTGTACAGCTC	59.776	50.000	0.00	0.00	0.00	4.09
881	6772	1.003839	TGATGCTCACCGGTCAACC	60.004	57.895	2.59	0.00	0.00	3.77
897	7020	0.765903	GGAGAGGATGGGATGGCTGA	60.766	60.000	0.00	0.00	0.00	4.26
898	7021	1.759881	GGAGAGGATGGGATGGCTG	59.240	63.158	0.00	0.00	0.00	4.85
899	7022	1.463018	GGGAGAGGATGGGATGGCT	60.463	63.158	0.00	0.00	0.00	4.75
901	7024	1.849823	GGGGGAGAGGATGGGATGG	60.850	68.421	0.00	0.00	0.00	3.51
938	7076	1.975363	GATGAACTGCCTGACGCTGC	61.975	60.000	0.00	0.00	39.93	5.25
963	7101	4.156455	AGGTGCTTTGAAGAACTGAAGA	57.844	40.909	2.07	0.00	34.81	2.87
1123	7300	4.312443	TGGACGAACAGGAAATTGACTAC	58.688	43.478	0.00	0.00	0.00	2.73
1135	7312	1.153939	CGAGAGGCTGGACGAACAG	60.154	63.158	0.00	6.73	41.41	3.16
1210	7387	2.092968	TCTCCATGAGCTTGGCGTATTT	60.093	45.455	0.00	0.00	36.66	1.40
1302	13188	1.801913	CCTCTTGACGAAGCCGACG	60.802	63.158	0.00	0.00	39.50	5.12
1319	13205	1.518302	GCGAAGAGGAAGAGGGTCC	59.482	63.158	0.00	0.00	38.03	4.46
1395	13281	1.144936	GCTGATCCTCCCCTTGACG	59.855	63.158	0.00	0.00	0.00	4.35
1423	13309	2.537560	CGGCGATGGTGATGGAAGC	61.538	63.158	0.00	0.00	0.00	3.86
1518	13407	4.316823	TGGACGGAGAGCACCCCT	62.317	66.667	0.00	0.00	0.00	4.79
1539	13428	1.280142	CGCGATGAGGTAGACGAGG	59.720	63.158	0.00	0.00	0.00	4.63
1692	13581	1.536073	CCACGAGCACCAAGAGGAGA	61.536	60.000	0.00	0.00	38.69	3.71
1767	13656	1.817099	CACCGCCATGCTCCTCTTC	60.817	63.158	0.00	0.00	0.00	2.87
1787	13676	2.198287	ACAGCCAGCAAGCACAAGG	61.198	57.895	0.55	0.00	34.23	3.61
1860	13749	3.772572	TCTGCATGGCTTGGTAGTAGTAA	59.227	43.478	2.33	0.00	0.00	2.24
1977	13869	6.293298	CGAAGAAATCAAAGCATCCCTCTATG	60.293	42.308	0.00	0.00	0.00	2.23
2035	13927	4.563580	CACGTACAACTGACTTGTGTACAA	59.436	41.667	12.24	0.00	43.38	2.41
2040	13932	5.197549	CAAATCACGTACAACTGACTTGTG	58.802	41.667	0.00	0.00	43.38	3.33
2043	13935	3.874543	TGCAAATCACGTACAACTGACTT	59.125	39.130	0.00	0.00	0.00	3.01
2046	13938	3.870723	GTGCAAATCACGTACAACTGA	57.129	42.857	0.00	0.00	35.76	3.41
2076	14647	8.742777	TGAATAGATCAGATGTTTTCCCAAAAG	58.257	33.333	7.88	0.00	33.04	2.27
2113	14686	0.958382	TGGTGTTCGTTATGCTGCCC	60.958	55.000	0.00	0.00	0.00	5.36
2152	14725	5.461407	GTCGCTAGGTGGTTTATAAAGCTAC	59.539	44.000	23.74	19.17	37.31	3.58
2156	14729	4.501921	GTCGTCGCTAGGTGGTTTATAAAG	59.498	45.833	0.00	0.00	0.00	1.85
2212	14785	3.148279	GAGGAGGGGCGATGACGT	61.148	66.667	0.00	0.00	41.98	4.34
2297	14871	3.126171	GTGGTTGCTGTTATGATGCGTTA	59.874	43.478	0.00	0.00	0.00	3.18
2307	14881	2.666862	CGGCGGTGGTTGCTGTTA	60.667	61.111	0.00	0.00	33.99	2.41
2352	14926	9.462174	GTCTATGTTCATGTGTTTTCATTTTGA	57.538	29.630	0.00	0.00	0.00	2.69
2388	14963	3.691575	TGGTGGATTTGCTCGGATTTTA	58.308	40.909	0.00	0.00	0.00	1.52
2412	14987	5.268387	AGATATATCTCTGGCGGATCTGTT	58.732	41.667	9.57	0.00	29.30	3.16
2431	15006	0.741927	TCGACGAGCGTGTGGAGATA	60.742	55.000	0.00	0.00	41.80	1.98
2523	15098	6.760440	ATGTCATGGTCAGGAAGATAAGAT	57.240	37.500	0.00	0.00	0.00	2.40
2527	15102	7.293299	AGGATTTATGTCATGGTCAGGAAGATA	59.707	37.037	0.00	0.00	0.00	1.98
2546	15121	9.191479	TGTTCCTTCAAGTTTTGTTAGGATTTA	57.809	29.630	12.60	1.68	39.99	1.40
2591	15166	1.766496	GATCCCAACCCTTATCGGTGA	59.234	52.381	0.00	0.00	35.83	4.02
2666	15241	1.396607	GGGTTTCTTTGCACCCCGTT	61.397	55.000	0.00	0.00	46.50	4.44
2690	15269	4.150897	TGTGTGAGATTGCTATAACCCC	57.849	45.455	0.00	0.00	0.00	4.95
2691	15270	4.941263	TGTTGTGTGAGATTGCTATAACCC	59.059	41.667	0.00	0.00	0.00	4.11
2692	15271	6.683974	ATGTTGTGTGAGATTGCTATAACC	57.316	37.500	0.00	0.00	0.00	2.85
2759	15356	2.385013	AAAATTTTGGGCGAGGCATC	57.615	45.000	1.75	0.00	0.00	3.91
2763	15360	1.876322	TGCAAAAATTTTGGGCGAGG	58.124	45.000	18.67	0.00	0.00	4.63
2773	15370	9.857957	ACAAATTGTTGAGAAAATGCAAAAATT	57.142	22.222	0.00	0.00	41.35	1.82
2826	15423	6.688922	TGGCTTGTACCATGATCTTTAGGATC	60.689	42.308	0.00	0.00	41.90	3.36
2857	15454	9.959749	TTTTTGTTAGTTTTGATAGCTTGGTAG	57.040	29.630	0.00	0.00	0.00	3.18
2888	15485	3.332761	TTGTGCAAAGACTAGCGTTTG	57.667	42.857	11.40	11.40	36.84	2.93

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.