Multiple sequence alignment - TraesCS2A01G490700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G490700 chr2A 100.000 3506 0 0 1 3506 724019642 724016137 0.000000e+00 6475.0
1 TraesCS2A01G490700 chr2A 90.173 1679 100 37 1011 2626 723867012 723868688 0.000000e+00 2126.0
2 TraesCS2A01G490700 chr2A 86.165 1330 172 7 1186 2506 723625341 723626667 0.000000e+00 1426.0
3 TraesCS2A01G490700 chr2A 80.583 206 33 4 581 784 265152870 265153070 6.060000e-33 152.0
4 TraesCS2A01G490700 chr2D 92.524 1886 89 21 839 2680 589685216 589683339 0.000000e+00 2654.0
5 TraesCS2A01G490700 chr2D 88.119 1919 151 44 827 2679 589522375 589524282 0.000000e+00 2209.0
6 TraesCS2A01G490700 chr2D 86.567 1340 167 8 1177 2506 589282289 589283625 0.000000e+00 1465.0
7 TraesCS2A01G490700 chr2D 89.869 533 29 7 53 570 589686041 589685519 0.000000e+00 662.0
8 TraesCS2A01G490700 chr2B 95.018 1425 65 4 1149 2568 713940369 713938946 0.000000e+00 2233.0
9 TraesCS2A01G490700 chr2B 89.525 1728 115 34 1011 2679 713790922 713792642 0.000000e+00 2128.0
10 TraesCS2A01G490700 chr2B 85.873 1352 176 11 1167 2506 712889703 712891051 0.000000e+00 1424.0
11 TraesCS2A01G490700 chr2B 89.243 502 43 2 2799 3289 713929982 713929481 4.970000e-173 617.0
12 TraesCS2A01G490700 chr2B 90.208 480 29 9 95 570 713941214 713940749 8.320000e-171 610.0
13 TraesCS2A01G490700 chr2B 89.150 341 20 6 827 1153 713940750 713940413 3.260000e-110 409.0
14 TraesCS2A01G490700 chr2B 89.950 199 18 2 2565 2762 713938920 713938723 4.490000e-64 255.0
15 TraesCS2A01G490700 chr2B 92.208 77 6 0 1 77 713943126 713943050 3.700000e-20 110.0
16 TraesCS2A01G490700 chr2B 100.000 34 0 0 64 97 713941259 713941226 2.920000e-06 63.9
17 TraesCS2A01G490700 chr2B 100.000 28 0 0 3478 3505 713929485 713929458 6.000000e-03 52.8
18 TraesCS2A01G490700 chr6B 79.318 1320 242 22 1187 2491 686363793 686365096 0.000000e+00 896.0
19 TraesCS2A01G490700 chr7B 79.352 1327 231 35 1187 2495 679359683 679360984 0.000000e+00 893.0
20 TraesCS2A01G490700 chr7B 81.526 249 34 7 575 816 563728413 563728170 9.930000e-46 195.0
21 TraesCS2A01G490700 chr5D 84.932 219 26 4 569 786 277720480 277720692 7.620000e-52 215.0
22 TraesCS2A01G490700 chr5D 100.000 28 0 0 3136 3163 370593614 370593587 6.000000e-03 52.8
23 TraesCS2A01G490700 chr7A 84.541 207 24 5 569 773 674681041 674680841 7.680000e-47 198.0
24 TraesCS2A01G490700 chr7A 80.583 206 31 7 572 774 438313033 438313232 2.180000e-32 150.0
25 TraesCS2A01G490700 chr7D 83.582 201 27 3 575 774 538078294 538078099 2.150000e-42 183.0
26 TraesCS2A01G490700 chr1A 82.143 224 25 8 571 786 82967912 82967696 1.000000e-40 178.0
27 TraesCS2A01G490700 chr3B 82.075 212 31 4 575 784 78846059 78845853 1.290000e-39 174.0
28 TraesCS2A01G490700 chr6A 89.189 74 7 1 579 651 606612761 606612688 1.340000e-14 91.6
29 TraesCS2A01G490700 chr4B 87.037 54 6 1 333 386 32898776 32898828 3.780000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G490700 chr2A 724016137 724019642 3505 True 6475.000000 6475 100.000000 1 3506 1 chr2A.!!$R1 3505
1 TraesCS2A01G490700 chr2A 723867012 723868688 1676 False 2126.000000 2126 90.173000 1011 2626 1 chr2A.!!$F3 1615
2 TraesCS2A01G490700 chr2A 723625341 723626667 1326 False 1426.000000 1426 86.165000 1186 2506 1 chr2A.!!$F2 1320
3 TraesCS2A01G490700 chr2D 589522375 589524282 1907 False 2209.000000 2209 88.119000 827 2679 1 chr2D.!!$F2 1852
4 TraesCS2A01G490700 chr2D 589683339 589686041 2702 True 1658.000000 2654 91.196500 53 2680 2 chr2D.!!$R1 2627
5 TraesCS2A01G490700 chr2D 589282289 589283625 1336 False 1465.000000 1465 86.567000 1177 2506 1 chr2D.!!$F1 1329
6 TraesCS2A01G490700 chr2B 713790922 713792642 1720 False 2128.000000 2128 89.525000 1011 2679 1 chr2B.!!$F2 1668
7 TraesCS2A01G490700 chr2B 712889703 712891051 1348 False 1424.000000 1424 85.873000 1167 2506 1 chr2B.!!$F1 1339
8 TraesCS2A01G490700 chr2B 713938723 713943126 4403 True 613.483333 2233 92.755667 1 2762 6 chr2B.!!$R2 2761
9 TraesCS2A01G490700 chr2B 713929458 713929982 524 True 334.900000 617 94.621500 2799 3505 2 chr2B.!!$R1 706
10 TraesCS2A01G490700 chr6B 686363793 686365096 1303 False 896.000000 896 79.318000 1187 2491 1 chr6B.!!$F1 1304
11 TraesCS2A01G490700 chr7B 679359683 679360984 1301 False 893.000000 893 79.352000 1187 2495 1 chr7B.!!$F1 1308

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
575 2395 0.030705 TCCCATCCTCTGCTTAGCCT 60.031 55.0 0.29 0.0 0.0 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2510 4789 0.685097 ACATGGCAGGTACGTCAAGT 59.315 50.0 1.47 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.624776 CAACAAGTTTCCTAGATGGGATAAATC 58.375 37.037 0.00 0.00 35.07 2.17
40 41 4.038763 GGGATAAATCGGGGACAATTTTCC 59.961 45.833 1.69 1.69 34.52 3.13
41 42 4.893524 GGATAAATCGGGGACAATTTTCCT 59.106 41.667 10.42 0.00 35.76 3.36
42 43 5.221244 GGATAAATCGGGGACAATTTTCCTG 60.221 44.000 10.42 4.20 35.76 3.86
97 1916 5.563475 CGATGGATTATGGCAATCCTGTTTC 60.563 44.000 16.96 9.17 45.01 2.78
346 2165 1.066143 ACACCACTAAGGGCTCATTCG 60.066 52.381 0.00 0.00 43.89 3.34
453 2272 5.777732 AGTCAATGTAAACCTAATTTGCCCA 59.222 36.000 0.00 0.00 32.27 5.36
470 2289 1.406069 CCCATTCTGACCTCTGAACGG 60.406 57.143 1.24 1.24 37.06 4.44
471 2290 1.363744 CATTCTGACCTCTGAACGGC 58.636 55.000 0.00 0.00 36.79 5.68
477 2296 1.006102 ACCTCTGAACGGCGTGAAG 60.006 57.895 15.70 14.76 0.00 3.02
535 2354 3.364889 TCACAACGGTCACTGTCTAAG 57.635 47.619 0.00 0.00 0.00 2.18
567 2387 1.810606 CGTCCCGATCCCATCCTCTG 61.811 65.000 0.00 0.00 0.00 3.35
568 2388 1.838846 TCCCGATCCCATCCTCTGC 60.839 63.158 0.00 0.00 0.00 4.26
569 2389 1.840650 CCCGATCCCATCCTCTGCT 60.841 63.158 0.00 0.00 0.00 4.24
570 2390 1.414061 CCCGATCCCATCCTCTGCTT 61.414 60.000 0.00 0.00 0.00 3.91
571 2391 1.342074 CCGATCCCATCCTCTGCTTA 58.658 55.000 0.00 0.00 0.00 3.09
572 2392 1.274728 CCGATCCCATCCTCTGCTTAG 59.725 57.143 0.00 0.00 0.00 2.18
573 2393 1.337635 CGATCCCATCCTCTGCTTAGC 60.338 57.143 0.00 0.00 0.00 3.09
574 2394 1.003003 GATCCCATCCTCTGCTTAGCC 59.997 57.143 0.29 0.00 0.00 3.93
575 2395 0.030705 TCCCATCCTCTGCTTAGCCT 60.031 55.000 0.29 0.00 0.00 4.58
576 2396 0.108207 CCCATCCTCTGCTTAGCCTG 59.892 60.000 0.29 0.00 0.00 4.85
577 2397 1.126488 CCATCCTCTGCTTAGCCTGA 58.874 55.000 0.29 0.00 0.00 3.86
578 2398 1.698532 CCATCCTCTGCTTAGCCTGAT 59.301 52.381 0.29 0.00 0.00 2.90
579 2399 2.289569 CCATCCTCTGCTTAGCCTGATC 60.290 54.545 0.29 0.00 0.00 2.92
580 2400 1.035923 TCCTCTGCTTAGCCTGATCG 58.964 55.000 0.29 0.00 0.00 3.69
581 2401 0.749649 CCTCTGCTTAGCCTGATCGT 59.250 55.000 0.29 0.00 0.00 3.73
582 2402 1.957177 CCTCTGCTTAGCCTGATCGTA 59.043 52.381 0.29 0.00 0.00 3.43
583 2403 2.362397 CCTCTGCTTAGCCTGATCGTAA 59.638 50.000 0.29 0.00 0.00 3.18
584 2404 3.006323 CCTCTGCTTAGCCTGATCGTAAT 59.994 47.826 0.29 0.00 0.00 1.89
585 2405 3.982475 TCTGCTTAGCCTGATCGTAATG 58.018 45.455 0.29 0.00 0.00 1.90
586 2406 3.636764 TCTGCTTAGCCTGATCGTAATGA 59.363 43.478 0.29 0.00 0.00 2.57
587 2407 3.982475 TGCTTAGCCTGATCGTAATGAG 58.018 45.455 0.29 0.00 0.00 2.90
588 2408 3.636764 TGCTTAGCCTGATCGTAATGAGA 59.363 43.478 0.29 0.00 0.00 3.27
589 2409 4.233789 GCTTAGCCTGATCGTAATGAGAG 58.766 47.826 0.00 0.00 0.00 3.20
590 2410 4.261825 GCTTAGCCTGATCGTAATGAGAGT 60.262 45.833 0.00 0.00 0.00 3.24
591 2411 5.048643 GCTTAGCCTGATCGTAATGAGAGTA 60.049 44.000 0.00 0.00 0.00 2.59
592 2412 6.349777 GCTTAGCCTGATCGTAATGAGAGTAT 60.350 42.308 0.00 0.00 0.00 2.12
593 2413 5.637006 AGCCTGATCGTAATGAGAGTATC 57.363 43.478 0.00 0.00 0.00 2.24
594 2414 5.073428 AGCCTGATCGTAATGAGAGTATCA 58.927 41.667 0.00 0.00 43.70 2.15
608 2428 6.856895 TGAGAGTATCATAAGCGGTATCATG 58.143 40.000 0.00 0.00 37.82 3.07
609 2429 6.434340 TGAGAGTATCATAAGCGGTATCATGT 59.566 38.462 0.00 0.00 37.82 3.21
610 2430 7.610305 TGAGAGTATCATAAGCGGTATCATGTA 59.390 37.037 0.00 0.00 37.82 2.29
611 2431 8.526667 AGAGTATCATAAGCGGTATCATGTAT 57.473 34.615 0.00 0.00 37.82 2.29
612 2432 8.409371 AGAGTATCATAAGCGGTATCATGTATG 58.591 37.037 0.00 0.00 37.82 2.39
613 2433 6.980978 AGTATCATAAGCGGTATCATGTATGC 59.019 38.462 0.00 0.00 0.00 3.14
614 2434 4.503910 TCATAAGCGGTATCATGTATGCC 58.496 43.478 0.00 0.00 37.01 4.40
615 2435 2.928801 AAGCGGTATCATGTATGCCA 57.071 45.000 10.96 0.00 40.23 4.92
616 2436 2.928801 AGCGGTATCATGTATGCCAA 57.071 45.000 10.96 0.00 40.23 4.52
617 2437 2.494059 AGCGGTATCATGTATGCCAAC 58.506 47.619 10.96 4.64 40.23 3.77
618 2438 2.104792 AGCGGTATCATGTATGCCAACT 59.895 45.455 10.96 6.23 40.23 3.16
619 2439 3.323691 AGCGGTATCATGTATGCCAACTA 59.676 43.478 10.96 0.00 40.23 2.24
620 2440 3.679980 GCGGTATCATGTATGCCAACTAG 59.320 47.826 10.96 0.00 40.23 2.57
621 2441 4.560716 GCGGTATCATGTATGCCAACTAGA 60.561 45.833 0.00 0.00 40.23 2.43
622 2442 5.724328 CGGTATCATGTATGCCAACTAGAT 58.276 41.667 0.00 0.00 40.23 1.98
623 2443 6.166279 CGGTATCATGTATGCCAACTAGATT 58.834 40.000 0.00 0.00 40.23 2.40
624 2444 6.650807 CGGTATCATGTATGCCAACTAGATTT 59.349 38.462 0.00 0.00 40.23 2.17
625 2445 7.173218 CGGTATCATGTATGCCAACTAGATTTT 59.827 37.037 0.00 0.00 40.23 1.82
626 2446 8.850156 GGTATCATGTATGCCAACTAGATTTTT 58.150 33.333 0.00 0.00 39.99 1.94
660 2480 8.777865 TGACACACAATTAAATAAGGAGAGAG 57.222 34.615 0.00 0.00 0.00 3.20
661 2481 8.375506 TGACACACAATTAAATAAGGAGAGAGT 58.624 33.333 0.00 0.00 0.00 3.24
662 2482 8.553459 ACACACAATTAAATAAGGAGAGAGTG 57.447 34.615 0.00 0.00 0.00 3.51
663 2483 8.157476 ACACACAATTAAATAAGGAGAGAGTGT 58.843 33.333 0.00 0.00 35.92 3.55
664 2484 8.446273 CACACAATTAAATAAGGAGAGAGTGTG 58.554 37.037 0.00 0.00 43.62 3.82
665 2485 8.157476 ACACAATTAAATAAGGAGAGAGTGTGT 58.843 33.333 0.00 0.00 39.71 3.72
666 2486 8.446273 CACAATTAAATAAGGAGAGAGTGTGTG 58.554 37.037 0.00 0.00 0.00 3.82
667 2487 7.607991 ACAATTAAATAAGGAGAGAGTGTGTGG 59.392 37.037 0.00 0.00 0.00 4.17
668 2488 6.681729 TTAAATAAGGAGAGAGTGTGTGGT 57.318 37.500 0.00 0.00 0.00 4.16
669 2489 7.786046 TTAAATAAGGAGAGAGTGTGTGGTA 57.214 36.000 0.00 0.00 0.00 3.25
670 2490 6.875972 AAATAAGGAGAGAGTGTGTGGTAT 57.124 37.500 0.00 0.00 0.00 2.73
671 2491 6.472686 AATAAGGAGAGAGTGTGTGGTATC 57.527 41.667 0.00 0.00 0.00 2.24
672 2492 3.458044 AGGAGAGAGTGTGTGGTATCA 57.542 47.619 0.00 0.00 0.00 2.15
673 2493 3.987745 AGGAGAGAGTGTGTGGTATCAT 58.012 45.455 0.00 0.00 0.00 2.45
674 2494 3.703556 AGGAGAGAGTGTGTGGTATCATG 59.296 47.826 0.00 0.00 0.00 3.07
675 2495 3.449018 GGAGAGAGTGTGTGGTATCATGT 59.551 47.826 0.00 0.00 0.00 3.21
676 2496 4.645136 GGAGAGAGTGTGTGGTATCATGTA 59.355 45.833 0.00 0.00 0.00 2.29
677 2497 5.303078 GGAGAGAGTGTGTGGTATCATGTAT 59.697 44.000 0.00 0.00 0.00 2.29
678 2498 6.398234 AGAGAGTGTGTGGTATCATGTATC 57.602 41.667 0.00 0.00 0.00 2.24
679 2499 5.893824 AGAGAGTGTGTGGTATCATGTATCA 59.106 40.000 0.00 0.00 0.00 2.15
680 2500 6.552725 AGAGAGTGTGTGGTATCATGTATCAT 59.447 38.462 0.00 0.00 0.00 2.45
681 2501 7.725844 AGAGAGTGTGTGGTATCATGTATCATA 59.274 37.037 0.00 0.00 0.00 2.15
682 2502 8.427902 AGAGTGTGTGGTATCATGTATCATAT 57.572 34.615 0.00 0.00 0.00 1.78
683 2503 8.526978 AGAGTGTGTGGTATCATGTATCATATC 58.473 37.037 0.00 0.00 0.00 1.63
684 2504 8.193953 AGTGTGTGGTATCATGTATCATATCA 57.806 34.615 0.00 0.00 0.00 2.15
685 2505 8.819845 AGTGTGTGGTATCATGTATCATATCAT 58.180 33.333 0.00 0.00 0.00 2.45
686 2506 8.876790 GTGTGTGGTATCATGTATCATATCATG 58.123 37.037 0.00 0.00 41.64 3.07
728 2548 7.806409 ATATTGCACTACTTTATGTCATGCA 57.194 32.000 0.00 0.00 43.47 3.96
730 2550 5.956068 TGCACTACTTTATGTCATGCAAA 57.044 34.783 0.00 0.00 42.75 3.68
731 2551 5.941733 TGCACTACTTTATGTCATGCAAAG 58.058 37.500 6.55 6.55 42.75 2.77
732 2552 4.795278 GCACTACTTTATGTCATGCAAAGC 59.205 41.667 7.66 0.00 38.66 3.51
733 2553 5.619757 GCACTACTTTATGTCATGCAAAGCA 60.620 40.000 7.66 0.00 44.86 3.91
734 2554 6.380995 CACTACTTTATGTCATGCAAAGCAA 58.619 36.000 7.66 0.00 43.62 3.91
735 2555 7.031372 CACTACTTTATGTCATGCAAAGCAAT 58.969 34.615 7.66 0.00 43.62 3.56
736 2556 7.543172 CACTACTTTATGTCATGCAAAGCAATT 59.457 33.333 7.66 0.00 43.62 2.32
737 2557 8.739039 ACTACTTTATGTCATGCAAAGCAATTA 58.261 29.630 7.66 0.00 43.62 1.40
738 2558 9.571810 CTACTTTATGTCATGCAAAGCAATTAA 57.428 29.630 7.66 0.00 43.62 1.40
748 2568 9.748708 TCATGCAAAGCAATTAATAAGATAACC 57.251 29.630 0.00 0.00 43.62 2.85
749 2569 9.754382 CATGCAAAGCAATTAATAAGATAACCT 57.246 29.630 0.00 0.00 43.62 3.50
823 2643 8.852135 TCATACATATGATACTCGTTACAACCA 58.148 33.333 10.38 0.00 37.76 3.67
824 2644 9.129209 CATACATATGATACTCGTTACAACCAG 57.871 37.037 10.38 0.00 35.75 4.00
825 2645 5.983720 ACATATGATACTCGTTACAACCAGC 59.016 40.000 10.38 0.00 0.00 4.85
832 2652 1.289109 CGTTACAACCAGCCTCACCG 61.289 60.000 0.00 0.00 0.00 4.94
856 2968 2.159226 ACTAACGATGCTGCCACTACTC 60.159 50.000 0.00 0.00 0.00 2.59
860 2972 0.539051 GATGCTGCCACTACTCCTGT 59.461 55.000 0.00 0.00 0.00 4.00
880 2996 0.322636 TTCCTCTCTTCTCGACGGCT 60.323 55.000 0.00 0.00 0.00 5.52
985 3112 0.823460 CCAATCCAATTCCAACCCCG 59.177 55.000 0.00 0.00 0.00 5.73
995 3122 2.203422 CAACCCCGGTTGCTCCAA 60.203 61.111 13.44 0.00 46.92 3.53
998 3125 2.755469 CCCCGGTTGCTCCAATGG 60.755 66.667 0.00 0.00 35.57 3.16
1003 3130 0.179129 CGGTTGCTCCAATGGAATGC 60.179 55.000 2.61 4.90 35.57 3.56
1021 3148 0.533491 GCCTCAGGAAATGCATGCAA 59.467 50.000 26.68 8.49 0.00 4.08
1072 3211 1.408340 CTCGACATCTGCTCATCCAGT 59.592 52.381 0.00 0.00 34.47 4.00
1132 3278 0.690762 TACCAGGAAGAACACCAGCC 59.309 55.000 0.00 0.00 0.00 4.85
1164 3387 2.486982 TGCTCAGCAAGAAAGCTCATTC 59.513 45.455 0.00 0.00 44.54 2.67
1173 3399 2.668457 AGAAAGCTCATTCTTACGCACG 59.332 45.455 0.00 0.00 36.23 5.34
1182 3411 2.212869 TCTTACGCACGTTCACTGTT 57.787 45.000 0.00 0.00 0.00 3.16
1603 3841 2.564553 GATCCAGGTCACGCGCTTCT 62.565 60.000 5.73 0.00 0.00 2.85
1812 4050 1.068055 GTCGAGTTCAAGCCCTACGAA 60.068 52.381 0.00 0.00 0.00 3.85
1881 4146 1.476488 GTGGTGAACAAGGTGCACTTT 59.524 47.619 17.98 13.35 41.54 2.66
2229 4500 0.456142 TCATCGACTTCGCCAACTCG 60.456 55.000 0.00 0.00 39.60 4.18
2255 4526 4.847444 GGAGAAGGAGCGGCTGGC 62.847 72.222 7.50 0.00 44.05 4.85
2510 4789 0.622136 TACACCCTCGACTAGCTCCA 59.378 55.000 0.00 0.00 0.00 3.86
2704 5038 5.960202 ACCAATGGGCTTTTGAGATATTTCT 59.040 36.000 3.55 0.00 37.90 2.52
2708 5042 5.723295 TGGGCTTTTGAGATATTTCTTTGC 58.277 37.500 0.00 0.00 30.30 3.68
2715 5049 4.199310 TGAGATATTTCTTTGCGGGAAGG 58.801 43.478 0.00 0.00 30.30 3.46
2773 5107 9.906660 TTTTCTGCATTACAATTTACAACTAGG 57.093 29.630 0.00 0.00 0.00 3.02
2774 5108 7.624360 TCTGCATTACAATTTACAACTAGGG 57.376 36.000 0.00 0.00 0.00 3.53
2775 5109 6.094881 TCTGCATTACAATTTACAACTAGGGC 59.905 38.462 0.00 0.00 0.00 5.19
2776 5110 5.712446 TGCATTACAATTTACAACTAGGGCA 59.288 36.000 0.00 0.00 0.00 5.36
2777 5111 6.033966 GCATTACAATTTACAACTAGGGCAC 58.966 40.000 0.00 0.00 0.00 5.01
2778 5112 6.127730 GCATTACAATTTACAACTAGGGCACT 60.128 38.462 0.00 0.00 0.00 4.40
2779 5113 7.066525 GCATTACAATTTACAACTAGGGCACTA 59.933 37.037 0.00 0.00 0.00 2.74
2780 5114 8.952278 CATTACAATTTACAACTAGGGCACTAA 58.048 33.333 0.00 0.00 0.00 2.24
2781 5115 9.695155 ATTACAATTTACAACTAGGGCACTAAT 57.305 29.630 0.00 0.00 0.00 1.73
2784 5118 9.695155 ACAATTTACAACTAGGGCACTAATATT 57.305 29.630 0.00 0.00 0.00 1.28
2797 5131 9.326489 AGGGCACTAATATTCTATTATGTCAGA 57.674 33.333 0.00 0.00 0.00 3.27
2809 5143 3.112709 GTCAGACCTTGACGGCGC 61.113 66.667 6.90 0.00 46.13 6.53
2810 5144 3.611674 TCAGACCTTGACGGCGCA 61.612 61.111 10.83 2.81 35.61 6.09
2824 5158 3.002791 ACGGCGCATCCATTATTGATAG 58.997 45.455 10.83 0.00 34.01 2.08
2885 5219 5.798125 TTGCCATTTTTACCTGTCATTCA 57.202 34.783 0.00 0.00 0.00 2.57
2929 5263 1.210931 CTGTGCGTTGCAATGGAGG 59.789 57.895 19.93 9.32 41.47 4.30
2931 5265 0.608856 TGTGCGTTGCAATGGAGGAT 60.609 50.000 19.93 0.00 41.47 3.24
2932 5266 0.179156 GTGCGTTGCAATGGAGGATG 60.179 55.000 19.93 0.00 41.47 3.51
2967 5302 5.530915 TGGTTCAACTCAATAGTGTCCTTTG 59.469 40.000 0.00 0.00 35.62 2.77
2972 5307 8.997621 TCAACTCAATAGTGTCCTTTGTATAC 57.002 34.615 0.00 0.00 35.62 1.47
2983 5318 7.180408 AGTGTCCTTTGTATACCTTACACTCAT 59.820 37.037 15.26 2.13 41.72 2.90
3067 5402 7.930325 ACATGATCTCCTGTGTTTGACATATAG 59.070 37.037 0.00 0.00 32.74 1.31
3126 5461 0.460635 TTATAACCACCACGAGGCGC 60.461 55.000 0.00 0.00 39.06 6.53
3155 5500 9.793252 CCAAAGATTTGATTGAGTTAATGTAGG 57.207 33.333 6.87 0.00 40.55 3.18
3182 5527 0.110486 GAGGGAAGGCTTCACCAACA 59.890 55.000 25.30 0.00 43.14 3.33
3186 5531 0.868406 GAAGGCTTCACCAACAGACG 59.132 55.000 21.99 0.00 43.14 4.18
3195 5540 3.968649 TCACCAACAGACGTACAACTAC 58.031 45.455 0.00 0.00 0.00 2.73
3201 5546 4.660789 ACAGACGTACAACTACCAACTT 57.339 40.909 0.00 0.00 0.00 2.66
3228 5573 9.483489 TCCTTTAATAGTAGAGATTGTGTACCA 57.517 33.333 0.00 0.00 0.00 3.25
3252 5597 8.184192 CCAAAAGCGTAGACTTGATTTGATAAT 58.816 33.333 0.00 0.00 0.00 1.28
3284 5629 8.893219 TTCGCTTATCAGATAGAACATGAATT 57.107 30.769 0.00 0.00 0.00 2.17
3285 5630 8.893219 TCGCTTATCAGATAGAACATGAATTT 57.107 30.769 0.00 0.00 0.00 1.82
3286 5631 9.981114 TCGCTTATCAGATAGAACATGAATTTA 57.019 29.630 0.00 0.00 0.00 1.40
3292 5637 9.857656 ATCAGATAGAACATGAATTTATGTGGT 57.142 29.630 15.81 9.18 40.24 4.16
3293 5638 9.685276 TCAGATAGAACATGAATTTATGTGGTT 57.315 29.630 15.81 7.84 40.24 3.67
3312 5657 8.997621 TGTGGTTAGTAAATAAGACATGAGAC 57.002 34.615 0.00 0.00 0.00 3.36
3313 5658 8.590204 TGTGGTTAGTAAATAAGACATGAGACA 58.410 33.333 0.00 0.00 0.00 3.41
3314 5659 9.088512 GTGGTTAGTAAATAAGACATGAGACAG 57.911 37.037 0.00 0.00 0.00 3.51
3315 5660 8.812972 TGGTTAGTAAATAAGACATGAGACAGT 58.187 33.333 0.00 0.00 0.00 3.55
3316 5661 9.654663 GGTTAGTAAATAAGACATGAGACAGTT 57.345 33.333 0.00 0.00 0.00 3.16
3319 5664 8.994429 AGTAAATAAGACATGAGACAGTTGAG 57.006 34.615 0.00 0.00 0.00 3.02
3320 5665 8.037758 AGTAAATAAGACATGAGACAGTTGAGG 58.962 37.037 0.00 0.00 0.00 3.86
3321 5666 2.758736 AGACATGAGACAGTTGAGGC 57.241 50.000 0.00 0.00 0.00 4.70
3322 5667 1.067283 AGACATGAGACAGTTGAGGCG 60.067 52.381 0.00 0.00 0.00 5.52
3323 5668 0.036952 ACATGAGACAGTTGAGGCGG 60.037 55.000 0.00 0.00 0.00 6.13
3324 5669 0.036952 CATGAGACAGTTGAGGCGGT 60.037 55.000 0.00 0.00 0.00 5.68
3325 5670 0.247736 ATGAGACAGTTGAGGCGGTC 59.752 55.000 0.00 0.00 34.55 4.79
3326 5671 0.827925 TGAGACAGTTGAGGCGGTCT 60.828 55.000 0.00 0.00 44.30 3.85
3327 5672 0.318762 GAGACAGTTGAGGCGGTCTT 59.681 55.000 0.00 0.00 42.34 3.01
3328 5673 0.034059 AGACAGTTGAGGCGGTCTTG 59.966 55.000 0.00 0.00 40.09 3.02
3329 5674 0.033504 GACAGTTGAGGCGGTCTTGA 59.966 55.000 0.00 0.00 32.26 3.02
3330 5675 0.687354 ACAGTTGAGGCGGTCTTGAT 59.313 50.000 0.00 0.00 0.00 2.57
3331 5676 1.081892 CAGTTGAGGCGGTCTTGATG 58.918 55.000 0.00 0.00 0.00 3.07
3332 5677 0.036010 AGTTGAGGCGGTCTTGATGG 60.036 55.000 0.00 0.00 0.00 3.51
3333 5678 1.026718 GTTGAGGCGGTCTTGATGGG 61.027 60.000 0.00 0.00 0.00 4.00
3334 5679 1.198094 TTGAGGCGGTCTTGATGGGA 61.198 55.000 0.00 0.00 0.00 4.37
3335 5680 1.198094 TGAGGCGGTCTTGATGGGAA 61.198 55.000 0.00 0.00 0.00 3.97
3336 5681 0.035439 GAGGCGGTCTTGATGGGAAA 60.035 55.000 0.00 0.00 0.00 3.13
3337 5682 0.322546 AGGCGGTCTTGATGGGAAAC 60.323 55.000 0.00 0.00 0.00 2.78
3350 5695 2.904697 GGGAAACCGGTAGGACATAG 57.095 55.000 8.00 0.00 43.64 2.23
3351 5696 2.113807 GGGAAACCGGTAGGACATAGT 58.886 52.381 8.00 0.00 43.64 2.12
3352 5697 3.299503 GGGAAACCGGTAGGACATAGTA 58.700 50.000 8.00 0.00 43.64 1.82
3353 5698 3.320256 GGGAAACCGGTAGGACATAGTAG 59.680 52.174 8.00 0.00 43.64 2.57
3354 5699 4.210331 GGAAACCGGTAGGACATAGTAGA 58.790 47.826 8.00 0.00 41.02 2.59
3355 5700 4.277921 GGAAACCGGTAGGACATAGTAGAG 59.722 50.000 8.00 0.00 41.02 2.43
3356 5701 4.516652 AACCGGTAGGACATAGTAGAGT 57.483 45.455 8.00 0.00 41.02 3.24
3357 5702 4.516652 ACCGGTAGGACATAGTAGAGTT 57.483 45.455 4.49 0.00 41.02 3.01
3358 5703 4.205587 ACCGGTAGGACATAGTAGAGTTG 58.794 47.826 4.49 0.00 41.02 3.16
3359 5704 4.080129 ACCGGTAGGACATAGTAGAGTTGA 60.080 45.833 4.49 0.00 41.02 3.18
3360 5705 4.515944 CCGGTAGGACATAGTAGAGTTGAG 59.484 50.000 0.00 0.00 41.02 3.02
3361 5706 5.366460 CGGTAGGACATAGTAGAGTTGAGA 58.634 45.833 0.00 0.00 0.00 3.27
3362 5707 5.821470 CGGTAGGACATAGTAGAGTTGAGAA 59.179 44.000 0.00 0.00 0.00 2.87
3363 5708 6.017770 CGGTAGGACATAGTAGAGTTGAGAAG 60.018 46.154 0.00 0.00 0.00 2.85
3364 5709 6.263617 GGTAGGACATAGTAGAGTTGAGAAGG 59.736 46.154 0.00 0.00 0.00 3.46
3365 5710 5.205056 AGGACATAGTAGAGTTGAGAAGGG 58.795 45.833 0.00 0.00 0.00 3.95
3366 5711 5.044030 AGGACATAGTAGAGTTGAGAAGGGA 60.044 44.000 0.00 0.00 0.00 4.20
3367 5712 5.657302 GGACATAGTAGAGTTGAGAAGGGAA 59.343 44.000 0.00 0.00 0.00 3.97
3368 5713 6.154706 GGACATAGTAGAGTTGAGAAGGGAAA 59.845 42.308 0.00 0.00 0.00 3.13
3369 5714 7.310485 GGACATAGTAGAGTTGAGAAGGGAAAA 60.310 40.741 0.00 0.00 0.00 2.29
3370 5715 7.974504 ACATAGTAGAGTTGAGAAGGGAAAAA 58.025 34.615 0.00 0.00 0.00 1.94
3371 5716 8.606830 ACATAGTAGAGTTGAGAAGGGAAAAAT 58.393 33.333 0.00 0.00 0.00 1.82
3372 5717 9.103861 CATAGTAGAGTTGAGAAGGGAAAAATC 57.896 37.037 0.00 0.00 0.00 2.17
3373 5718 7.079451 AGTAGAGTTGAGAAGGGAAAAATCA 57.921 36.000 0.00 0.00 0.00 2.57
3374 5719 7.518188 AGTAGAGTTGAGAAGGGAAAAATCAA 58.482 34.615 0.00 0.00 0.00 2.57
3375 5720 7.998964 AGTAGAGTTGAGAAGGGAAAAATCAAA 59.001 33.333 0.00 0.00 32.13 2.69
3376 5721 7.660030 AGAGTTGAGAAGGGAAAAATCAAAA 57.340 32.000 0.00 0.00 32.13 2.44
3377 5722 7.492524 AGAGTTGAGAAGGGAAAAATCAAAAC 58.507 34.615 0.00 0.00 32.13 2.43
3378 5723 6.273071 AGTTGAGAAGGGAAAAATCAAAACG 58.727 36.000 0.00 0.00 32.13 3.60
3379 5724 5.195001 TGAGAAGGGAAAAATCAAAACGG 57.805 39.130 0.00 0.00 0.00 4.44
3380 5725 4.038642 TGAGAAGGGAAAAATCAAAACGGG 59.961 41.667 0.00 0.00 0.00 5.28
3381 5726 3.323691 AGAAGGGAAAAATCAAAACGGGG 59.676 43.478 0.00 0.00 0.00 5.73
3382 5727 2.965562 AGGGAAAAATCAAAACGGGGA 58.034 42.857 0.00 0.00 0.00 4.81
3383 5728 2.897326 AGGGAAAAATCAAAACGGGGAG 59.103 45.455 0.00 0.00 0.00 4.30
3384 5729 2.028476 GGGAAAAATCAAAACGGGGAGG 60.028 50.000 0.00 0.00 0.00 4.30
3385 5730 2.894765 GGAAAAATCAAAACGGGGAGGA 59.105 45.455 0.00 0.00 0.00 3.71
3386 5731 3.513912 GGAAAAATCAAAACGGGGAGGAT 59.486 43.478 0.00 0.00 0.00 3.24
3387 5732 4.381612 GGAAAAATCAAAACGGGGAGGATC 60.382 45.833 0.00 0.00 0.00 3.36
3388 5733 2.038387 AATCAAAACGGGGAGGATCG 57.962 50.000 0.00 0.00 34.37 3.69
3389 5734 1.200519 ATCAAAACGGGGAGGATCGA 58.799 50.000 0.00 0.00 34.37 3.59
3390 5735 0.978151 TCAAAACGGGGAGGATCGAA 59.022 50.000 0.00 0.00 34.37 3.71
3391 5736 1.084289 CAAAACGGGGAGGATCGAAC 58.916 55.000 0.00 0.00 34.37 3.95
3392 5737 0.390735 AAAACGGGGAGGATCGAACG 60.391 55.000 0.00 0.00 34.37 3.95
3393 5738 2.847435 AAACGGGGAGGATCGAACGC 62.847 60.000 0.00 0.00 34.37 4.84
3394 5739 4.925576 CGGGGAGGATCGAACGCG 62.926 72.222 3.53 3.53 34.37 6.01
3407 5752 3.659334 ACGCGAGAACGTAGGTGA 58.341 55.556 15.93 0.00 46.19 4.02
3408 5753 1.951510 ACGCGAGAACGTAGGTGAA 59.048 52.632 15.93 0.00 46.19 3.18
3409 5754 0.109873 ACGCGAGAACGTAGGTGAAG 60.110 55.000 15.93 0.00 46.19 3.02
3410 5755 0.109873 CGCGAGAACGTAGGTGAAGT 60.110 55.000 0.00 0.00 41.98 3.01
3411 5756 1.665161 CGCGAGAACGTAGGTGAAGTT 60.665 52.381 0.00 0.00 41.98 2.66
3412 5757 1.719780 GCGAGAACGTAGGTGAAGTTG 59.280 52.381 0.00 0.00 41.98 3.16
3413 5758 2.606308 GCGAGAACGTAGGTGAAGTTGA 60.606 50.000 0.00 0.00 41.98 3.18
3414 5759 3.635331 CGAGAACGTAGGTGAAGTTGAA 58.365 45.455 0.00 0.00 29.05 2.69
3415 5760 3.669122 CGAGAACGTAGGTGAAGTTGAAG 59.331 47.826 0.00 0.00 29.05 3.02
3416 5761 3.988517 GAGAACGTAGGTGAAGTTGAAGG 59.011 47.826 0.00 0.00 29.05 3.46
3417 5762 3.640029 AGAACGTAGGTGAAGTTGAAGGA 59.360 43.478 0.00 0.00 29.05 3.36
3418 5763 3.662247 ACGTAGGTGAAGTTGAAGGAG 57.338 47.619 0.00 0.00 0.00 3.69
3419 5764 2.963782 ACGTAGGTGAAGTTGAAGGAGT 59.036 45.455 0.00 0.00 0.00 3.85
3420 5765 3.243771 ACGTAGGTGAAGTTGAAGGAGTG 60.244 47.826 0.00 0.00 0.00 3.51
3421 5766 3.005472 CGTAGGTGAAGTTGAAGGAGTGA 59.995 47.826 0.00 0.00 0.00 3.41
3422 5767 4.500887 CGTAGGTGAAGTTGAAGGAGTGAA 60.501 45.833 0.00 0.00 0.00 3.18
3423 5768 4.503714 AGGTGAAGTTGAAGGAGTGAAA 57.496 40.909 0.00 0.00 0.00 2.69
3424 5769 4.200092 AGGTGAAGTTGAAGGAGTGAAAC 58.800 43.478 0.00 0.00 0.00 2.78
3425 5770 3.945285 GGTGAAGTTGAAGGAGTGAAACA 59.055 43.478 0.00 0.00 41.43 2.83
3426 5771 4.398044 GGTGAAGTTGAAGGAGTGAAACAA 59.602 41.667 0.00 0.00 41.43 2.83
3427 5772 5.105917 GGTGAAGTTGAAGGAGTGAAACAAA 60.106 40.000 0.00 0.00 41.43 2.83
3428 5773 6.386654 GTGAAGTTGAAGGAGTGAAACAAAA 58.613 36.000 0.00 0.00 41.43 2.44
3429 5774 6.866248 GTGAAGTTGAAGGAGTGAAACAAAAA 59.134 34.615 0.00 0.00 41.43 1.94
3430 5775 7.545615 GTGAAGTTGAAGGAGTGAAACAAAAAT 59.454 33.333 0.00 0.00 41.43 1.82
3431 5776 7.759433 TGAAGTTGAAGGAGTGAAACAAAAATC 59.241 33.333 0.00 0.00 41.43 2.17
3432 5777 7.410120 AGTTGAAGGAGTGAAACAAAAATCT 57.590 32.000 0.00 0.00 41.43 2.40
3433 5778 7.840931 AGTTGAAGGAGTGAAACAAAAATCTT 58.159 30.769 0.00 0.00 41.43 2.40
3434 5779 8.966868 AGTTGAAGGAGTGAAACAAAAATCTTA 58.033 29.630 0.00 0.00 41.43 2.10
3435 5780 9.020813 GTTGAAGGAGTGAAACAAAAATCTTAC 57.979 33.333 0.00 0.00 41.43 2.34
3436 5781 8.287439 TGAAGGAGTGAAACAAAAATCTTACA 57.713 30.769 0.00 0.00 41.43 2.41
3437 5782 8.188139 TGAAGGAGTGAAACAAAAATCTTACAC 58.812 33.333 0.00 0.00 41.43 2.90
3438 5783 7.881775 AGGAGTGAAACAAAAATCTTACACT 57.118 32.000 0.00 0.00 41.43 3.55
3439 5784 7.707104 AGGAGTGAAACAAAAATCTTACACTG 58.293 34.615 0.00 0.00 41.43 3.66
3440 5785 7.339466 AGGAGTGAAACAAAAATCTTACACTGT 59.661 33.333 0.00 0.00 41.43 3.55
3441 5786 7.973944 GGAGTGAAACAAAAATCTTACACTGTT 59.026 33.333 0.00 0.00 41.43 3.16
3442 5787 9.353999 GAGTGAAACAAAAATCTTACACTGTTT 57.646 29.630 0.00 0.00 41.43 2.83
3443 5788 9.705290 AGTGAAACAAAAATCTTACACTGTTTT 57.295 25.926 0.00 0.00 41.43 2.43
3471 5816 9.965902 AAATAGTGGAGATAAAGATTGTTCAGT 57.034 29.630 0.00 0.00 0.00 3.41
3472 5817 9.965902 AATAGTGGAGATAAAGATTGTTCAGTT 57.034 29.630 0.00 0.00 0.00 3.16
3473 5818 9.965902 ATAGTGGAGATAAAGATTGTTCAGTTT 57.034 29.630 0.00 0.00 0.00 2.66
3474 5819 8.329203 AGTGGAGATAAAGATTGTTCAGTTTC 57.671 34.615 0.00 0.00 0.00 2.78
3475 5820 8.160106 AGTGGAGATAAAGATTGTTCAGTTTCT 58.840 33.333 0.00 0.00 0.00 2.52
3476 5821 8.233190 GTGGAGATAAAGATTGTTCAGTTTCTG 58.767 37.037 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.197983 GTCCCCGATTTATCCCATCTAGG 59.802 52.174 0.00 0.00 37.03 3.02
20 21 5.515106 TCAGGAAAATTGTCCCCGATTTAT 58.485 37.500 11.33 0.00 38.59 1.40
26 27 2.825532 ACATTCAGGAAAATTGTCCCCG 59.174 45.455 11.33 3.24 38.59 5.73
40 41 9.345517 CAAACAAACCATAAGTATCACATTCAG 57.654 33.333 0.00 0.00 0.00 3.02
41 42 8.303156 CCAAACAAACCATAAGTATCACATTCA 58.697 33.333 0.00 0.00 0.00 2.57
42 43 7.275560 GCCAAACAAACCATAAGTATCACATTC 59.724 37.037 0.00 0.00 0.00 2.67
97 1916 7.301054 GGATCAAACAAATATCAGAATAGGCG 58.699 38.462 0.00 0.00 0.00 5.52
169 1988 3.609373 CGATTGTGTTTTGATGCATGTCC 59.391 43.478 2.46 0.00 0.00 4.02
170 1989 3.609373 CCGATTGTGTTTTGATGCATGTC 59.391 43.478 2.46 0.00 0.00 3.06
172 1991 2.346244 GCCGATTGTGTTTTGATGCATG 59.654 45.455 2.46 0.00 0.00 4.06
173 1992 2.029200 TGCCGATTGTGTTTTGATGCAT 60.029 40.909 0.00 0.00 0.00 3.96
174 1993 1.339291 TGCCGATTGTGTTTTGATGCA 59.661 42.857 0.00 0.00 0.00 3.96
175 1994 2.063156 TGCCGATTGTGTTTTGATGC 57.937 45.000 0.00 0.00 0.00 3.91
181 2000 0.743688 TGCTGTTGCCGATTGTGTTT 59.256 45.000 0.00 0.00 38.71 2.83
276 2095 8.803397 AAAACTAATGTTACTCCCCAAGATAC 57.197 34.615 0.00 0.00 34.96 2.24
277 2096 8.832735 AGAAAACTAATGTTACTCCCCAAGATA 58.167 33.333 0.00 0.00 34.96 1.98
278 2097 7.699878 AGAAAACTAATGTTACTCCCCAAGAT 58.300 34.615 0.00 0.00 34.96 2.40
279 2098 7.086685 AGAAAACTAATGTTACTCCCCAAGA 57.913 36.000 0.00 0.00 34.96 3.02
453 2272 0.108615 CGCCGTTCAGAGGTCAGAAT 60.109 55.000 0.00 0.00 0.00 2.40
470 2289 0.179124 CCTAGACTGGCTCTTCACGC 60.179 60.000 0.00 0.00 0.00 5.34
471 2290 1.133407 GTCCTAGACTGGCTCTTCACG 59.867 57.143 0.00 0.00 0.00 4.35
477 2296 3.618690 AATGTTGTCCTAGACTGGCTC 57.381 47.619 0.00 0.00 33.15 4.70
520 2339 3.687125 TCAGATCTTAGACAGTGACCGT 58.313 45.455 0.00 0.00 0.00 4.83
526 2345 2.159366 CCGCGTTCAGATCTTAGACAGT 60.159 50.000 4.92 0.00 0.00 3.55
535 2354 3.255379 GGACGCCGCGTTCAGATC 61.255 66.667 21.18 5.64 41.37 2.75
555 2375 1.063183 GGCTAAGCAGAGGATGGGAT 58.937 55.000 0.00 0.00 0.00 3.85
557 2377 0.108207 CAGGCTAAGCAGAGGATGGG 59.892 60.000 0.00 0.00 0.00 4.00
558 2378 1.126488 TCAGGCTAAGCAGAGGATGG 58.874 55.000 0.00 0.00 0.00 3.51
567 2387 4.233789 CTCTCATTACGATCAGGCTAAGC 58.766 47.826 0.00 0.00 0.00 3.09
568 2388 5.446143 ACTCTCATTACGATCAGGCTAAG 57.554 43.478 0.00 0.00 0.00 2.18
569 2389 6.715264 TGATACTCTCATTACGATCAGGCTAA 59.285 38.462 0.00 0.00 0.00 3.09
570 2390 6.238648 TGATACTCTCATTACGATCAGGCTA 58.761 40.000 0.00 0.00 0.00 3.93
571 2391 5.073428 TGATACTCTCATTACGATCAGGCT 58.927 41.667 0.00 0.00 0.00 4.58
572 2392 5.378292 TGATACTCTCATTACGATCAGGC 57.622 43.478 0.00 0.00 0.00 4.85
573 2393 7.700234 GCTTATGATACTCTCATTACGATCAGG 59.300 40.741 0.00 0.00 42.07 3.86
574 2394 7.427895 CGCTTATGATACTCTCATTACGATCAG 59.572 40.741 0.00 0.00 42.07 2.90
575 2395 7.244192 CGCTTATGATACTCTCATTACGATCA 58.756 38.462 0.00 0.00 42.07 2.92
576 2396 6.689241 CCGCTTATGATACTCTCATTACGATC 59.311 42.308 0.00 0.00 42.07 3.69
577 2397 6.151312 ACCGCTTATGATACTCTCATTACGAT 59.849 38.462 0.00 0.00 42.07 3.73
578 2398 5.472478 ACCGCTTATGATACTCTCATTACGA 59.528 40.000 0.00 0.00 42.07 3.43
579 2399 5.700846 ACCGCTTATGATACTCTCATTACG 58.299 41.667 0.00 0.00 42.07 3.18
580 2400 8.459635 TGATACCGCTTATGATACTCTCATTAC 58.540 37.037 0.00 0.00 42.07 1.89
581 2401 8.575649 TGATACCGCTTATGATACTCTCATTA 57.424 34.615 0.00 0.00 42.07 1.90
582 2402 7.468141 TGATACCGCTTATGATACTCTCATT 57.532 36.000 0.00 0.00 42.07 2.57
583 2403 7.123397 ACATGATACCGCTTATGATACTCTCAT 59.877 37.037 0.00 0.00 46.49 2.90
584 2404 6.434340 ACATGATACCGCTTATGATACTCTCA 59.566 38.462 0.00 0.00 38.53 3.27
585 2405 6.857956 ACATGATACCGCTTATGATACTCTC 58.142 40.000 0.00 0.00 0.00 3.20
586 2406 6.842437 ACATGATACCGCTTATGATACTCT 57.158 37.500 0.00 0.00 0.00 3.24
587 2407 7.168302 GCATACATGATACCGCTTATGATACTC 59.832 40.741 0.00 0.00 0.00 2.59
588 2408 6.980978 GCATACATGATACCGCTTATGATACT 59.019 38.462 0.00 0.00 0.00 2.12
589 2409 6.201044 GGCATACATGATACCGCTTATGATAC 59.799 42.308 0.00 0.00 0.00 2.24
590 2410 6.127196 TGGCATACATGATACCGCTTATGATA 60.127 38.462 0.00 0.00 0.00 2.15
591 2411 5.118990 GGCATACATGATACCGCTTATGAT 58.881 41.667 0.00 0.00 0.00 2.45
592 2412 4.020662 TGGCATACATGATACCGCTTATGA 60.021 41.667 0.00 0.00 0.00 2.15
593 2413 4.252878 TGGCATACATGATACCGCTTATG 58.747 43.478 0.00 0.00 0.00 1.90
594 2414 4.551702 TGGCATACATGATACCGCTTAT 57.448 40.909 0.00 0.00 0.00 1.73
595 2415 4.062293 GTTGGCATACATGATACCGCTTA 58.938 43.478 0.00 0.00 0.00 3.09
596 2416 2.878406 GTTGGCATACATGATACCGCTT 59.122 45.455 0.00 0.00 0.00 4.68
597 2417 2.104792 AGTTGGCATACATGATACCGCT 59.895 45.455 0.00 0.00 0.00 5.52
598 2418 2.494059 AGTTGGCATACATGATACCGC 58.506 47.619 0.00 0.00 0.00 5.68
599 2419 5.134202 TCTAGTTGGCATACATGATACCG 57.866 43.478 0.00 0.00 0.00 4.02
600 2420 7.986085 AAATCTAGTTGGCATACATGATACC 57.014 36.000 0.00 0.00 0.00 2.73
634 2454 9.388506 CTCTCTCCTTATTTAATTGTGTGTCAT 57.611 33.333 0.00 0.00 0.00 3.06
635 2455 8.375506 ACTCTCTCCTTATTTAATTGTGTGTCA 58.624 33.333 0.00 0.00 0.00 3.58
636 2456 8.660373 CACTCTCTCCTTATTTAATTGTGTGTC 58.340 37.037 0.00 0.00 0.00 3.67
637 2457 8.157476 ACACTCTCTCCTTATTTAATTGTGTGT 58.843 33.333 0.00 0.00 33.39 3.72
638 2458 8.446273 CACACTCTCTCCTTATTTAATTGTGTG 58.554 37.037 0.00 0.00 42.32 3.82
639 2459 8.157476 ACACACTCTCTCCTTATTTAATTGTGT 58.843 33.333 0.00 0.00 38.22 3.72
640 2460 8.446273 CACACACTCTCTCCTTATTTAATTGTG 58.554 37.037 0.00 0.00 36.41 3.33
641 2461 7.607991 CCACACACTCTCTCCTTATTTAATTGT 59.392 37.037 0.00 0.00 0.00 2.71
642 2462 7.607991 ACCACACACTCTCTCCTTATTTAATTG 59.392 37.037 0.00 0.00 0.00 2.32
643 2463 7.690256 ACCACACACTCTCTCCTTATTTAATT 58.310 34.615 0.00 0.00 0.00 1.40
644 2464 7.259088 ACCACACACTCTCTCCTTATTTAAT 57.741 36.000 0.00 0.00 0.00 1.40
645 2465 6.681729 ACCACACACTCTCTCCTTATTTAA 57.318 37.500 0.00 0.00 0.00 1.52
646 2466 7.618117 TGATACCACACACTCTCTCCTTATTTA 59.382 37.037 0.00 0.00 0.00 1.40
647 2467 6.440647 TGATACCACACACTCTCTCCTTATTT 59.559 38.462 0.00 0.00 0.00 1.40
648 2468 5.958380 TGATACCACACACTCTCTCCTTATT 59.042 40.000 0.00 0.00 0.00 1.40
649 2469 5.519808 TGATACCACACACTCTCTCCTTAT 58.480 41.667 0.00 0.00 0.00 1.73
650 2470 4.930696 TGATACCACACACTCTCTCCTTA 58.069 43.478 0.00 0.00 0.00 2.69
651 2471 3.779444 TGATACCACACACTCTCTCCTT 58.221 45.455 0.00 0.00 0.00 3.36
652 2472 3.458044 TGATACCACACACTCTCTCCT 57.542 47.619 0.00 0.00 0.00 3.69
653 2473 3.449018 ACATGATACCACACACTCTCTCC 59.551 47.826 0.00 0.00 0.00 3.71
654 2474 4.727507 ACATGATACCACACACTCTCTC 57.272 45.455 0.00 0.00 0.00 3.20
655 2475 5.893824 TGATACATGATACCACACACTCTCT 59.106 40.000 0.00 0.00 0.00 3.10
656 2476 6.149129 TGATACATGATACCACACACTCTC 57.851 41.667 0.00 0.00 0.00 3.20
657 2477 6.737720 ATGATACATGATACCACACACTCT 57.262 37.500 0.00 0.00 0.00 3.24
658 2478 8.306761 TGATATGATACATGATACCACACACTC 58.693 37.037 0.00 0.00 0.00 3.51
659 2479 8.193953 TGATATGATACATGATACCACACACT 57.806 34.615 0.00 0.00 0.00 3.55
660 2480 8.876790 CATGATATGATACATGATACCACACAC 58.123 37.037 0.00 0.00 44.28 3.82
661 2481 8.814931 TCATGATATGATACATGATACCACACA 58.185 33.333 0.00 0.00 44.86 3.72
702 2522 8.685427 TGCATGACATAAAGTAGTGCAATATTT 58.315 29.630 0.00 0.00 43.44 1.40
703 2523 8.224389 TGCATGACATAAAGTAGTGCAATATT 57.776 30.769 0.00 0.00 43.44 1.28
704 2524 7.806409 TGCATGACATAAAGTAGTGCAATAT 57.194 32.000 0.00 0.00 43.44 1.28
705 2525 7.622893 TTGCATGACATAAAGTAGTGCAATA 57.377 32.000 12.64 0.00 46.66 1.90
706 2526 6.513806 TTGCATGACATAAAGTAGTGCAAT 57.486 33.333 12.64 0.00 46.66 3.56
708 2528 5.619757 GCTTTGCATGACATAAAGTAGTGCA 60.620 40.000 10.83 3.02 44.19 4.57
709 2529 4.795278 GCTTTGCATGACATAAAGTAGTGC 59.205 41.667 10.83 0.67 39.69 4.40
710 2530 5.941733 TGCTTTGCATGACATAAAGTAGTG 58.058 37.500 10.83 0.00 34.69 2.74
711 2531 6.573664 TTGCTTTGCATGACATAAAGTAGT 57.426 33.333 10.83 0.00 38.76 2.73
712 2532 9.571810 TTAATTGCTTTGCATGACATAAAGTAG 57.428 29.630 10.83 0.00 38.76 2.57
722 2542 9.748708 GGTTATCTTATTAATTGCTTTGCATGA 57.251 29.630 0.00 0.00 38.76 3.07
723 2543 9.754382 AGGTTATCTTATTAATTGCTTTGCATG 57.246 29.630 0.00 0.00 38.76 4.06
797 2617 8.852135 TGGTTGTAACGAGTATCATATGTATGA 58.148 33.333 1.90 5.27 45.78 2.15
798 2618 9.129209 CTGGTTGTAACGAGTATCATATGTATG 57.871 37.037 1.90 0.00 33.17 2.39
799 2619 7.813148 GCTGGTTGTAACGAGTATCATATGTAT 59.187 37.037 1.90 0.00 37.13 2.29
800 2620 7.143340 GCTGGTTGTAACGAGTATCATATGTA 58.857 38.462 1.90 0.00 37.13 2.29
801 2621 5.983720 GCTGGTTGTAACGAGTATCATATGT 59.016 40.000 1.90 0.00 37.13 2.29
802 2622 5.405571 GGCTGGTTGTAACGAGTATCATATG 59.594 44.000 8.26 0.00 37.13 1.78
803 2623 5.304614 AGGCTGGTTGTAACGAGTATCATAT 59.695 40.000 8.26 0.00 37.13 1.78
804 2624 4.647853 AGGCTGGTTGTAACGAGTATCATA 59.352 41.667 8.26 0.00 37.13 2.15
805 2625 3.451178 AGGCTGGTTGTAACGAGTATCAT 59.549 43.478 8.26 0.00 37.13 2.45
806 2626 2.829720 AGGCTGGTTGTAACGAGTATCA 59.170 45.455 8.26 0.00 37.13 2.15
807 2627 3.119245 TGAGGCTGGTTGTAACGAGTATC 60.119 47.826 0.00 7.26 37.13 2.24
808 2628 2.829720 TGAGGCTGGTTGTAACGAGTAT 59.170 45.455 0.00 0.00 37.13 2.12
809 2629 2.029649 GTGAGGCTGGTTGTAACGAGTA 60.030 50.000 0.00 0.00 37.13 2.59
810 2630 1.045407 TGAGGCTGGTTGTAACGAGT 58.955 50.000 0.00 0.00 37.13 4.18
811 2631 1.429463 GTGAGGCTGGTTGTAACGAG 58.571 55.000 0.00 2.84 37.74 4.18
812 2632 0.034337 GGTGAGGCTGGTTGTAACGA 59.966 55.000 0.00 0.00 0.00 3.85
813 2633 1.289109 CGGTGAGGCTGGTTGTAACG 61.289 60.000 0.00 0.00 0.00 3.18
814 2634 0.953960 CCGGTGAGGCTGGTTGTAAC 60.954 60.000 0.00 0.00 38.84 2.50
815 2635 1.373435 CCGGTGAGGCTGGTTGTAA 59.627 57.895 0.00 0.00 38.84 2.41
816 2636 3.065306 CCGGTGAGGCTGGTTGTA 58.935 61.111 0.00 0.00 38.84 2.41
822 2642 0.179145 CGTTAGTACCGGTGAGGCTG 60.179 60.000 19.93 0.00 46.52 4.85
823 2643 0.322816 TCGTTAGTACCGGTGAGGCT 60.323 55.000 19.93 12.32 46.52 4.58
824 2644 0.743097 ATCGTTAGTACCGGTGAGGC 59.257 55.000 19.93 4.69 46.52 4.70
832 2652 1.134788 AGTGGCAGCATCGTTAGTACC 60.135 52.381 0.00 0.00 0.00 3.34
856 2968 2.414824 CGTCGAGAAGAGAGGAAACAGG 60.415 54.545 0.00 0.00 0.00 4.00
860 2972 0.526662 GCCGTCGAGAAGAGAGGAAA 59.473 55.000 0.00 0.00 31.66 3.13
880 2996 5.711506 AGTTGACCATGCATGACATTTTCTA 59.288 36.000 28.31 8.53 36.64 2.10
985 3112 0.176449 GGCATTCCATTGGAGCAACC 59.824 55.000 16.28 9.08 39.54 3.77
995 3122 2.037144 GCATTTCCTGAGGCATTCCAT 58.963 47.619 0.00 0.00 33.74 3.41
998 3125 2.802057 GCATGCATTTCCTGAGGCATTC 60.802 50.000 14.21 0.00 43.97 2.67
1003 3130 1.470979 GCTTGCATGCATTTCCTGAGG 60.471 52.381 23.37 0.00 0.00 3.86
1021 3148 4.923942 CGGAGGGCGATGCATGCT 62.924 66.667 20.33 4.11 0.00 3.79
1072 3211 5.045651 AGTGTGTGATTATTGGATGGTGAGA 60.046 40.000 0.00 0.00 0.00 3.27
1147 3368 4.645956 CGTAAGAATGAGCTTTCTTGCTG 58.354 43.478 19.32 12.21 43.84 4.41
1153 3374 2.412089 ACGTGCGTAAGAATGAGCTTTC 59.588 45.455 0.00 0.00 43.02 2.62
1154 3375 2.413837 ACGTGCGTAAGAATGAGCTTT 58.586 42.857 0.00 0.00 43.02 3.51
1164 3387 1.855978 TCAACAGTGAACGTGCGTAAG 59.144 47.619 0.00 0.00 43.44 2.34
1173 3399 5.334414 GGTGATCTTCATGTCAACAGTGAAC 60.334 44.000 0.00 0.00 34.87 3.18
1182 3411 1.001860 TGCACGGTGATCTTCATGTCA 59.998 47.619 13.29 0.00 0.00 3.58
2085 4356 1.813859 CGCCCAGAGGATGACGTTA 59.186 57.895 0.00 0.00 33.47 3.18
2265 4536 4.148825 ACCATCTCAGCCGCGTCC 62.149 66.667 4.92 0.00 0.00 4.79
2510 4789 0.685097 ACATGGCAGGTACGTCAAGT 59.315 50.000 1.47 0.00 0.00 3.16
2604 4929 2.242043 ACTCTTCCAAAACAGCATGGG 58.758 47.619 0.00 0.00 43.62 4.00
2653 4987 8.633075 AAATATTTGCCTTAATCATGTTCACG 57.367 30.769 0.00 0.00 0.00 4.35
2680 5014 5.960202 AGAAATATCTCAAAAGCCCATTGGT 59.040 36.000 1.20 0.00 0.00 3.67
2681 5015 6.475596 AGAAATATCTCAAAAGCCCATTGG 57.524 37.500 0.00 0.00 0.00 3.16
2682 5016 7.201582 GCAAAGAAATATCTCAAAAGCCCATTG 60.202 37.037 0.00 0.00 33.77 2.82
2683 5017 6.820152 GCAAAGAAATATCTCAAAAGCCCATT 59.180 34.615 0.00 0.00 33.77 3.16
2704 5038 2.091541 CTGAATAAGCCTTCCCGCAAA 58.908 47.619 0.00 0.00 0.00 3.68
2708 5042 6.234177 AGAAATATCTGAATAAGCCTTCCCG 58.766 40.000 0.00 0.00 33.59 5.14
2748 5082 8.519526 CCCTAGTTGTAAATTGTAATGCAGAAA 58.480 33.333 0.00 0.00 0.00 2.52
2753 5087 6.033966 GTGCCCTAGTTGTAAATTGTAATGC 58.966 40.000 0.00 0.00 0.00 3.56
2771 5105 9.326489 TCTGACATAATAGAATATTAGTGCCCT 57.674 33.333 0.00 0.00 0.00 5.19
2772 5106 9.372369 GTCTGACATAATAGAATATTAGTGCCC 57.628 37.037 2.24 0.00 0.00 5.36
2773 5107 9.372369 GGTCTGACATAATAGAATATTAGTGCC 57.628 37.037 10.38 0.00 0.00 5.01
2793 5127 2.835701 GATGCGCCGTCAAGGTCTGA 62.836 60.000 4.18 0.00 43.70 3.27
2794 5128 2.434884 ATGCGCCGTCAAGGTCTG 60.435 61.111 4.18 0.00 43.70 3.51
2795 5129 2.125512 GATGCGCCGTCAAGGTCT 60.126 61.111 4.18 0.00 43.70 3.85
2796 5130 3.195698 GGATGCGCCGTCAAGGTC 61.196 66.667 4.18 0.00 43.70 3.85
2797 5131 2.819984 AATGGATGCGCCGTCAAGGT 62.820 55.000 4.18 0.00 43.70 3.50
2805 5139 6.283694 TCTATCTATCAATAATGGATGCGCC 58.716 40.000 4.18 0.00 36.37 6.53
2809 5143 8.883954 ACGCATCTATCTATCAATAATGGATG 57.116 34.615 0.00 0.00 39.81 3.51
2893 5227 7.251994 ACGCACAGAAAATTAGTTTGTTACAA 58.748 30.769 0.00 0.00 0.00 2.41
2906 5240 2.035704 TCCATTGCAACGCACAGAAAAT 59.964 40.909 0.00 0.00 38.71 1.82
2911 5245 1.210931 CCTCCATTGCAACGCACAG 59.789 57.895 0.00 0.00 38.71 3.66
2929 5263 6.763135 TGAGTTGAACCACTAGAATATGCATC 59.237 38.462 0.19 0.00 0.00 3.91
2931 5265 6.048732 TGAGTTGAACCACTAGAATATGCA 57.951 37.500 0.00 0.00 0.00 3.96
2932 5266 6.985188 TTGAGTTGAACCACTAGAATATGC 57.015 37.500 0.00 0.00 0.00 3.14
3006 5341 9.932207 ATCTTTTGCATTAACTCAATCATCAAA 57.068 25.926 0.00 0.00 0.00 2.69
3043 5378 6.933521 GCTATATGTCAAACACAGGAGATCAT 59.066 38.462 0.00 0.00 38.85 2.45
3048 5383 5.277683 GCATGCTATATGTCAAACACAGGAG 60.278 44.000 11.37 0.00 38.85 3.69
3052 5387 6.150809 TCAAAGCATGCTATATGTCAAACACA 59.849 34.615 23.00 0.00 40.18 3.72
3099 5434 6.457799 GCCTCGTGGTGGTTATAAAGTAATTG 60.458 42.308 5.26 0.00 35.27 2.32
3126 5461 7.816031 ACATTAACTCAATCAAATCTTTGGCAG 59.184 33.333 3.02 0.00 38.66 4.85
3155 5500 2.087646 GAAGCCTTCCCTCAACACATC 58.912 52.381 0.00 0.00 0.00 3.06
3157 5502 0.843309 TGAAGCCTTCCCTCAACACA 59.157 50.000 1.21 0.00 0.00 3.72
3182 5527 4.343239 AGGAAAGTTGGTAGTTGTACGTCT 59.657 41.667 0.00 0.00 0.00 4.18
3286 5631 9.601217 GTCTCATGTCTTATTTACTAACCACAT 57.399 33.333 0.00 0.00 0.00 3.21
3287 5632 8.590204 TGTCTCATGTCTTATTTACTAACCACA 58.410 33.333 0.00 0.00 0.00 4.17
3288 5633 8.997621 TGTCTCATGTCTTATTTACTAACCAC 57.002 34.615 0.00 0.00 0.00 4.16
3289 5634 8.812972 ACTGTCTCATGTCTTATTTACTAACCA 58.187 33.333 0.00 0.00 0.00 3.67
3290 5635 9.654663 AACTGTCTCATGTCTTATTTACTAACC 57.345 33.333 0.00 0.00 0.00 2.85
3294 5639 8.037758 CCTCAACTGTCTCATGTCTTATTTACT 58.962 37.037 0.00 0.00 0.00 2.24
3295 5640 7.201565 GCCTCAACTGTCTCATGTCTTATTTAC 60.202 40.741 0.00 0.00 0.00 2.01
3296 5641 6.818644 GCCTCAACTGTCTCATGTCTTATTTA 59.181 38.462 0.00 0.00 0.00 1.40
3297 5642 5.645497 GCCTCAACTGTCTCATGTCTTATTT 59.355 40.000 0.00 0.00 0.00 1.40
3298 5643 5.181748 GCCTCAACTGTCTCATGTCTTATT 58.818 41.667 0.00 0.00 0.00 1.40
3299 5644 4.679106 CGCCTCAACTGTCTCATGTCTTAT 60.679 45.833 0.00 0.00 0.00 1.73
3300 5645 3.367395 CGCCTCAACTGTCTCATGTCTTA 60.367 47.826 0.00 0.00 0.00 2.10
3301 5646 2.611473 CGCCTCAACTGTCTCATGTCTT 60.611 50.000 0.00 0.00 0.00 3.01
3302 5647 1.067283 CGCCTCAACTGTCTCATGTCT 60.067 52.381 0.00 0.00 0.00 3.41
3303 5648 1.354040 CGCCTCAACTGTCTCATGTC 58.646 55.000 0.00 0.00 0.00 3.06
3304 5649 0.036952 CCGCCTCAACTGTCTCATGT 60.037 55.000 0.00 0.00 0.00 3.21
3305 5650 0.036952 ACCGCCTCAACTGTCTCATG 60.037 55.000 0.00 0.00 0.00 3.07
3306 5651 0.247736 GACCGCCTCAACTGTCTCAT 59.752 55.000 0.00 0.00 0.00 2.90
3307 5652 0.827925 AGACCGCCTCAACTGTCTCA 60.828 55.000 0.00 0.00 32.85 3.27
3308 5653 0.318762 AAGACCGCCTCAACTGTCTC 59.681 55.000 0.00 0.00 37.09 3.36
3309 5654 0.034059 CAAGACCGCCTCAACTGTCT 59.966 55.000 0.00 0.00 39.66 3.41
3310 5655 0.033504 TCAAGACCGCCTCAACTGTC 59.966 55.000 0.00 0.00 0.00 3.51
3311 5656 0.687354 ATCAAGACCGCCTCAACTGT 59.313 50.000 0.00 0.00 0.00 3.55
3312 5657 1.081892 CATCAAGACCGCCTCAACTG 58.918 55.000 0.00 0.00 0.00 3.16
3313 5658 0.036010 CCATCAAGACCGCCTCAACT 60.036 55.000 0.00 0.00 0.00 3.16
3314 5659 1.026718 CCCATCAAGACCGCCTCAAC 61.027 60.000 0.00 0.00 0.00 3.18
3315 5660 1.198094 TCCCATCAAGACCGCCTCAA 61.198 55.000 0.00 0.00 0.00 3.02
3316 5661 1.198094 TTCCCATCAAGACCGCCTCA 61.198 55.000 0.00 0.00 0.00 3.86
3317 5662 0.035439 TTTCCCATCAAGACCGCCTC 60.035 55.000 0.00 0.00 0.00 4.70
3318 5663 0.322546 GTTTCCCATCAAGACCGCCT 60.323 55.000 0.00 0.00 0.00 5.52
3319 5664 1.313091 GGTTTCCCATCAAGACCGCC 61.313 60.000 0.00 0.00 0.00 6.13
3320 5665 1.644786 CGGTTTCCCATCAAGACCGC 61.645 60.000 0.00 0.00 45.40 5.68
3321 5666 2.466867 CGGTTTCCCATCAAGACCG 58.533 57.895 0.00 0.00 45.86 4.79
3322 5667 0.037734 ACCGGTTTCCCATCAAGACC 59.962 55.000 0.00 0.00 0.00 3.85
3323 5668 2.629051 CTACCGGTTTCCCATCAAGAC 58.371 52.381 15.04 0.00 0.00 3.01
3324 5669 1.557832 CCTACCGGTTTCCCATCAAGA 59.442 52.381 15.04 0.00 0.00 3.02
3325 5670 1.557832 TCCTACCGGTTTCCCATCAAG 59.442 52.381 15.04 0.00 0.00 3.02
3326 5671 1.279846 GTCCTACCGGTTTCCCATCAA 59.720 52.381 15.04 0.00 0.00 2.57
3327 5672 0.906775 GTCCTACCGGTTTCCCATCA 59.093 55.000 15.04 0.00 0.00 3.07
3328 5673 0.906775 TGTCCTACCGGTTTCCCATC 59.093 55.000 15.04 0.00 0.00 3.51
3329 5674 1.591768 ATGTCCTACCGGTTTCCCAT 58.408 50.000 15.04 8.08 0.00 4.00
3330 5675 2.112998 CTATGTCCTACCGGTTTCCCA 58.887 52.381 15.04 5.72 0.00 4.37
3331 5676 2.113807 ACTATGTCCTACCGGTTTCCC 58.886 52.381 15.04 0.00 0.00 3.97
3332 5677 4.210331 TCTACTATGTCCTACCGGTTTCC 58.790 47.826 15.04 0.00 0.00 3.13
3333 5678 4.886489 ACTCTACTATGTCCTACCGGTTTC 59.114 45.833 15.04 1.39 0.00 2.78
3334 5679 4.864726 ACTCTACTATGTCCTACCGGTTT 58.135 43.478 15.04 0.00 0.00 3.27
3335 5680 4.516652 ACTCTACTATGTCCTACCGGTT 57.483 45.455 15.04 0.00 0.00 4.44
3336 5681 4.080129 TCAACTCTACTATGTCCTACCGGT 60.080 45.833 13.98 13.98 0.00 5.28
3337 5682 4.458397 TCAACTCTACTATGTCCTACCGG 58.542 47.826 0.00 0.00 0.00 5.28
3338 5683 5.366460 TCTCAACTCTACTATGTCCTACCG 58.634 45.833 0.00 0.00 0.00 4.02
3339 5684 6.263617 CCTTCTCAACTCTACTATGTCCTACC 59.736 46.154 0.00 0.00 0.00 3.18
3340 5685 6.263617 CCCTTCTCAACTCTACTATGTCCTAC 59.736 46.154 0.00 0.00 0.00 3.18
3341 5686 6.159928 TCCCTTCTCAACTCTACTATGTCCTA 59.840 42.308 0.00 0.00 0.00 2.94
3342 5687 5.044030 TCCCTTCTCAACTCTACTATGTCCT 60.044 44.000 0.00 0.00 0.00 3.85
3343 5688 5.202004 TCCCTTCTCAACTCTACTATGTCC 58.798 45.833 0.00 0.00 0.00 4.02
3344 5689 6.777213 TTCCCTTCTCAACTCTACTATGTC 57.223 41.667 0.00 0.00 0.00 3.06
3345 5690 7.554959 TTTTCCCTTCTCAACTCTACTATGT 57.445 36.000 0.00 0.00 0.00 2.29
3346 5691 9.103861 GATTTTTCCCTTCTCAACTCTACTATG 57.896 37.037 0.00 0.00 0.00 2.23
3347 5692 8.826765 TGATTTTTCCCTTCTCAACTCTACTAT 58.173 33.333 0.00 0.00 0.00 2.12
3348 5693 8.202461 TGATTTTTCCCTTCTCAACTCTACTA 57.798 34.615 0.00 0.00 0.00 1.82
3349 5694 7.079451 TGATTTTTCCCTTCTCAACTCTACT 57.921 36.000 0.00 0.00 0.00 2.57
3350 5695 7.745620 TTGATTTTTCCCTTCTCAACTCTAC 57.254 36.000 0.00 0.00 0.00 2.59
3351 5696 8.630037 GTTTTGATTTTTCCCTTCTCAACTCTA 58.370 33.333 0.00 0.00 0.00 2.43
3352 5697 7.492524 GTTTTGATTTTTCCCTTCTCAACTCT 58.507 34.615 0.00 0.00 0.00 3.24
3353 5698 6.417930 CGTTTTGATTTTTCCCTTCTCAACTC 59.582 38.462 0.00 0.00 0.00 3.01
3354 5699 6.273071 CGTTTTGATTTTTCCCTTCTCAACT 58.727 36.000 0.00 0.00 0.00 3.16
3355 5700 5.462068 CCGTTTTGATTTTTCCCTTCTCAAC 59.538 40.000 0.00 0.00 0.00 3.18
3356 5701 5.452636 CCCGTTTTGATTTTTCCCTTCTCAA 60.453 40.000 0.00 0.00 0.00 3.02
3357 5702 4.038642 CCCGTTTTGATTTTTCCCTTCTCA 59.961 41.667 0.00 0.00 0.00 3.27
3358 5703 4.556233 CCCGTTTTGATTTTTCCCTTCTC 58.444 43.478 0.00 0.00 0.00 2.87
3359 5704 3.323691 CCCCGTTTTGATTTTTCCCTTCT 59.676 43.478 0.00 0.00 0.00 2.85
3360 5705 3.322541 TCCCCGTTTTGATTTTTCCCTTC 59.677 43.478 0.00 0.00 0.00 3.46
3361 5706 3.310193 TCCCCGTTTTGATTTTTCCCTT 58.690 40.909 0.00 0.00 0.00 3.95
3362 5707 2.897326 CTCCCCGTTTTGATTTTTCCCT 59.103 45.455 0.00 0.00 0.00 4.20
3363 5708 2.028476 CCTCCCCGTTTTGATTTTTCCC 60.028 50.000 0.00 0.00 0.00 3.97
3364 5709 2.894765 TCCTCCCCGTTTTGATTTTTCC 59.105 45.455 0.00 0.00 0.00 3.13
3365 5710 4.674362 CGATCCTCCCCGTTTTGATTTTTC 60.674 45.833 0.00 0.00 0.00 2.29
3366 5711 3.192633 CGATCCTCCCCGTTTTGATTTTT 59.807 43.478 0.00 0.00 0.00 1.94
3367 5712 2.752903 CGATCCTCCCCGTTTTGATTTT 59.247 45.455 0.00 0.00 0.00 1.82
3368 5713 2.026636 TCGATCCTCCCCGTTTTGATTT 60.027 45.455 0.00 0.00 0.00 2.17
3369 5714 1.557832 TCGATCCTCCCCGTTTTGATT 59.442 47.619 0.00 0.00 0.00 2.57
3370 5715 1.200519 TCGATCCTCCCCGTTTTGAT 58.799 50.000 0.00 0.00 0.00 2.57
3371 5716 0.978151 TTCGATCCTCCCCGTTTTGA 59.022 50.000 0.00 0.00 0.00 2.69
3372 5717 1.084289 GTTCGATCCTCCCCGTTTTG 58.916 55.000 0.00 0.00 0.00 2.44
3373 5718 0.390735 CGTTCGATCCTCCCCGTTTT 60.391 55.000 0.00 0.00 0.00 2.43
3374 5719 1.217244 CGTTCGATCCTCCCCGTTT 59.783 57.895 0.00 0.00 0.00 3.60
3375 5720 2.890371 CGTTCGATCCTCCCCGTT 59.110 61.111 0.00 0.00 0.00 4.44
3376 5721 3.834799 GCGTTCGATCCTCCCCGT 61.835 66.667 0.00 0.00 0.00 5.28
3377 5722 4.925576 CGCGTTCGATCCTCCCCG 62.926 72.222 0.00 0.00 38.10 5.73
3378 5723 3.486252 CTCGCGTTCGATCCTCCCC 62.486 68.421 5.77 0.00 44.56 4.81
3379 5724 2.001361 TTCTCGCGTTCGATCCTCCC 62.001 60.000 5.77 0.00 44.56 4.30
3380 5725 0.866483 GTTCTCGCGTTCGATCCTCC 60.866 60.000 5.77 0.00 44.56 4.30
3381 5726 1.194896 CGTTCTCGCGTTCGATCCTC 61.195 60.000 5.77 0.00 44.56 3.71
3382 5727 1.226323 CGTTCTCGCGTTCGATCCT 60.226 57.895 5.77 0.00 44.56 3.24
3383 5728 0.247814 TACGTTCTCGCGTTCGATCC 60.248 55.000 5.77 0.00 44.56 3.36
3384 5729 1.103015 CTACGTTCTCGCGTTCGATC 58.897 55.000 5.77 0.21 44.56 3.69
3385 5730 0.247974 CCTACGTTCTCGCGTTCGAT 60.248 55.000 5.77 1.64 44.56 3.59
3386 5731 1.133253 CCTACGTTCTCGCGTTCGA 59.867 57.895 5.77 0.00 43.04 3.71
3387 5732 1.154338 ACCTACGTTCTCGCGTTCG 60.154 57.895 5.77 9.54 43.04 3.95
3388 5733 0.110056 TCACCTACGTTCTCGCGTTC 60.110 55.000 5.77 0.00 43.04 3.95
3389 5734 0.311790 TTCACCTACGTTCTCGCGTT 59.688 50.000 5.77 0.00 43.04 4.84
3391 5736 0.109873 ACTTCACCTACGTTCTCGCG 60.110 55.000 0.00 0.00 41.18 5.87
3392 5737 1.719780 CAACTTCACCTACGTTCTCGC 59.280 52.381 0.00 0.00 41.18 5.03
3393 5738 3.278367 TCAACTTCACCTACGTTCTCG 57.722 47.619 0.00 0.00 43.34 4.04
3394 5739 3.988517 CCTTCAACTTCACCTACGTTCTC 59.011 47.826 0.00 0.00 0.00 2.87
3395 5740 3.640029 TCCTTCAACTTCACCTACGTTCT 59.360 43.478 0.00 0.00 0.00 3.01
3396 5741 3.986277 TCCTTCAACTTCACCTACGTTC 58.014 45.455 0.00 0.00 0.00 3.95
3397 5742 3.387050 ACTCCTTCAACTTCACCTACGTT 59.613 43.478 0.00 0.00 0.00 3.99
3398 5743 2.963782 ACTCCTTCAACTTCACCTACGT 59.036 45.455 0.00 0.00 0.00 3.57
3399 5744 3.005472 TCACTCCTTCAACTTCACCTACG 59.995 47.826 0.00 0.00 0.00 3.51
3400 5745 4.602340 TCACTCCTTCAACTTCACCTAC 57.398 45.455 0.00 0.00 0.00 3.18
3401 5746 5.104693 TGTTTCACTCCTTCAACTTCACCTA 60.105 40.000 0.00 0.00 0.00 3.08
3402 5747 4.200092 GTTTCACTCCTTCAACTTCACCT 58.800 43.478 0.00 0.00 0.00 4.00
3403 5748 3.945285 TGTTTCACTCCTTCAACTTCACC 59.055 43.478 0.00 0.00 0.00 4.02
3404 5749 5.560966 TTGTTTCACTCCTTCAACTTCAC 57.439 39.130 0.00 0.00 0.00 3.18
3405 5750 6.582677 TTTTGTTTCACTCCTTCAACTTCA 57.417 33.333 0.00 0.00 0.00 3.02
3406 5751 7.976175 AGATTTTTGTTTCACTCCTTCAACTTC 59.024 33.333 0.00 0.00 0.00 3.01
3407 5752 7.840931 AGATTTTTGTTTCACTCCTTCAACTT 58.159 30.769 0.00 0.00 0.00 2.66
3408 5753 7.410120 AGATTTTTGTTTCACTCCTTCAACT 57.590 32.000 0.00 0.00 0.00 3.16
3409 5754 9.020813 GTAAGATTTTTGTTTCACTCCTTCAAC 57.979 33.333 0.00 0.00 0.00 3.18
3410 5755 8.744652 TGTAAGATTTTTGTTTCACTCCTTCAA 58.255 29.630 0.00 0.00 0.00 2.69
3411 5756 8.188139 GTGTAAGATTTTTGTTTCACTCCTTCA 58.812 33.333 0.00 0.00 0.00 3.02
3412 5757 8.406297 AGTGTAAGATTTTTGTTTCACTCCTTC 58.594 33.333 0.00 0.00 30.65 3.46
3413 5758 8.190784 CAGTGTAAGATTTTTGTTTCACTCCTT 58.809 33.333 0.00 0.00 33.54 3.36
3414 5759 7.339466 ACAGTGTAAGATTTTTGTTTCACTCCT 59.661 33.333 0.00 0.00 33.54 3.69
3415 5760 7.480810 ACAGTGTAAGATTTTTGTTTCACTCC 58.519 34.615 0.00 0.00 33.54 3.85
3416 5761 8.911247 AACAGTGTAAGATTTTTGTTTCACTC 57.089 30.769 0.00 0.00 33.54 3.51
3417 5762 9.705290 AAAACAGTGTAAGATTTTTGTTTCACT 57.295 25.926 0.00 0.00 37.66 3.41
3445 5790 9.965902 ACTGAACAATCTTTATCTCCACTATTT 57.034 29.630 0.00 0.00 0.00 1.40
3446 5791 9.965902 AACTGAACAATCTTTATCTCCACTATT 57.034 29.630 0.00 0.00 0.00 1.73
3447 5792 9.965902 AAACTGAACAATCTTTATCTCCACTAT 57.034 29.630 0.00 0.00 0.00 2.12
3448 5793 9.436957 GAAACTGAACAATCTTTATCTCCACTA 57.563 33.333 0.00 0.00 0.00 2.74
3449 5794 8.160106 AGAAACTGAACAATCTTTATCTCCACT 58.840 33.333 0.00 0.00 0.00 4.00
3450 5795 8.233190 CAGAAACTGAACAATCTTTATCTCCAC 58.767 37.037 0.00 0.00 32.44 4.02
3451 5796 7.939039 ACAGAAACTGAACAATCTTTATCTCCA 59.061 33.333 5.76 0.00 35.18 3.86
3452 5797 8.329203 ACAGAAACTGAACAATCTTTATCTCC 57.671 34.615 5.76 0.00 35.18 3.71
3453 5798 9.604626 CAACAGAAACTGAACAATCTTTATCTC 57.395 33.333 5.76 0.00 35.18 2.75
3454 5799 9.125026 ACAACAGAAACTGAACAATCTTTATCT 57.875 29.630 5.76 0.00 35.18 1.98
3455 5800 9.173939 CACAACAGAAACTGAACAATCTTTATC 57.826 33.333 5.76 0.00 35.18 1.75
3456 5801 8.902806 TCACAACAGAAACTGAACAATCTTTAT 58.097 29.630 5.76 0.00 35.18 1.40
3457 5802 8.275015 TCACAACAGAAACTGAACAATCTTTA 57.725 30.769 5.76 0.00 35.18 1.85
3458 5803 7.156876 TCACAACAGAAACTGAACAATCTTT 57.843 32.000 5.76 0.00 35.18 2.52
3459 5804 6.757897 TCACAACAGAAACTGAACAATCTT 57.242 33.333 5.76 0.00 35.18 2.40
3460 5805 6.757897 TTCACAACAGAAACTGAACAATCT 57.242 33.333 5.76 0.00 35.18 2.40
3461 5806 7.917505 AGAATTCACAACAGAAACTGAACAATC 59.082 33.333 8.44 0.00 35.18 2.67
3462 5807 7.775120 AGAATTCACAACAGAAACTGAACAAT 58.225 30.769 8.44 0.00 35.18 2.71
3463 5808 7.156876 AGAATTCACAACAGAAACTGAACAA 57.843 32.000 8.44 0.00 35.18 2.83
3464 5809 6.757897 AGAATTCACAACAGAAACTGAACA 57.242 33.333 8.44 0.00 35.18 3.18
3465 5810 9.567848 TTAAAGAATTCACAACAGAAACTGAAC 57.432 29.630 8.44 0.00 35.18 3.18
3467 5812 9.950680 GATTAAAGAATTCACAACAGAAACTGA 57.049 29.630 8.44 0.00 35.18 3.41
3468 5813 9.956720 AGATTAAAGAATTCACAACAGAAACTG 57.043 29.630 8.44 0.00 37.52 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.