Multiple sequence alignment - TraesCS2A01G490000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G490000 chr2A 100.000 3326 0 0 1 3326 723624342 723627667 0.000000e+00 6143.0
1 TraesCS2A01G490000 chr2A 86.186 1332 168 9 1000 2326 724018457 724017137 0.000000e+00 1426.0
2 TraesCS2A01G490000 chr2A 85.841 1356 165 13 993 2326 723867205 723868555 0.000000e+00 1415.0
3 TraesCS2A01G490000 chr2A 90.775 271 18 4 2349 2618 763843067 763842803 4.080000e-94 355.0
4 TraesCS2A01G490000 chr2A 100.000 121 0 0 3206 3326 8431577 8431697 1.200000e-54 224.0
5 TraesCS2A01G490000 chr2A 86.250 160 13 7 42 196 723585582 723585737 7.380000e-37 165.0
6 TraesCS2A01G490000 chr2A 91.111 45 1 1 1 42 723585521 723585565 1.290000e-04 58.4
7 TraesCS2A01G490000 chr2B 91.977 1932 106 5 458 2340 712889134 712891065 0.000000e+00 2663.0
8 TraesCS2A01G490000 chr2B 86.313 1337 177 4 993 2326 713791108 713792441 0.000000e+00 1450.0
9 TraesCS2A01G490000 chr2B 86.192 1347 170 11 986 2326 713940344 713939008 0.000000e+00 1443.0
10 TraesCS2A01G490000 chr2B 82.019 634 57 19 2616 3202 712891371 712891994 1.390000e-133 486.0
11 TraesCS2A01G490000 chr2B 91.815 281 21 1 22 300 712844958 712845238 1.120000e-104 390.0
12 TraesCS2A01G490000 chr2B 92.821 195 10 2 110 300 712888920 712889114 2.530000e-71 279.0
13 TraesCS2A01G490000 chr2B 100.000 121 0 0 3206 3326 393153067 393152947 1.200000e-54 224.0
14 TraesCS2A01G490000 chr2B 93.069 101 5 2 372 472 54765994 54765896 2.670000e-31 147.0
15 TraesCS2A01G490000 chr2B 91.304 46 4 0 43 88 712888872 712888917 2.770000e-06 63.9
16 TraesCS2A01G490000 chr2D 94.888 1467 70 2 877 2340 589282175 589283639 0.000000e+00 2289.0
17 TraesCS2A01G490000 chr2D 86.384 1344 176 4 986 2326 589684853 589683514 0.000000e+00 1461.0
18 TraesCS2A01G490000 chr2D 86.387 1337 176 4 993 2326 589522761 589524094 0.000000e+00 1456.0
19 TraesCS2A01G490000 chr2D 86.460 613 51 9 2616 3202 589283679 589284285 0.000000e+00 643.0
20 TraesCS2A01G490000 chr2D 89.860 286 17 11 43 322 589280183 589280462 1.130000e-94 357.0
21 TraesCS2A01G490000 chr2D 87.281 228 12 4 656 883 589281937 589282147 9.220000e-61 244.0
22 TraesCS2A01G490000 chr2D 91.667 156 8 2 480 630 589280496 589280651 9.350000e-51 211.0
23 TraesCS2A01G490000 chr2D 97.727 44 1 0 626 669 589280674 589280717 3.560000e-10 76.8
24 TraesCS2A01G490000 chr6B 79.775 1246 230 15 1072 2311 686363867 686365096 0.000000e+00 885.0
25 TraesCS2A01G490000 chr6B 98.425 127 1 1 3201 3326 637949634 637949760 4.320000e-54 222.0
26 TraesCS2A01G490000 chr6B 96.703 91 3 0 374 464 369484837 369484927 5.750000e-33 152.0
27 TraesCS2A01G490000 chr6B 96.703 91 3 0 371 461 702688136 702688046 5.750000e-33 152.0
28 TraesCS2A01G490000 chr6A 79.027 1254 236 18 1072 2315 597788517 597789753 0.000000e+00 833.0
29 TraesCS2A01G490000 chr6A 90.876 274 17 5 2346 2618 524227660 524227926 8.770000e-96 361.0
30 TraesCS2A01G490000 chr6A 90.876 274 17 5 2346 2618 524253157 524252891 8.770000e-96 361.0
31 TraesCS2A01G490000 chr5A 91.760 267 17 2 2354 2619 104621188 104620926 1.890000e-97 366.0
32 TraesCS2A01G490000 chr5A 91.078 269 19 2 2352 2619 19262861 19262597 3.150000e-95 359.0
33 TraesCS2A01G490000 chr5A 96.324 136 4 1 3191 3326 432261934 432262068 4.320000e-54 222.0
34 TraesCS2A01G490000 chr3A 91.450 269 19 1 2351 2619 474832558 474832822 1.890000e-97 366.0
35 TraesCS2A01G490000 chr3A 99.194 124 1 0 3203 3326 213674537 213674660 1.200000e-54 224.0
36 TraesCS2A01G490000 chr3A 97.710 131 1 2 3197 3326 352608750 352608879 1.200000e-54 224.0
37 TraesCS2A01G490000 chr3A 98.413 126 2 0 3201 3326 700180849 700180974 4.320000e-54 222.0
38 TraesCS2A01G490000 chr7A 90.357 280 22 2 2353 2631 653720680 653720955 2.440000e-96 363.0
39 TraesCS2A01G490000 chr1A 91.011 267 20 1 2354 2620 250493959 250494221 1.130000e-94 357.0
40 TraesCS2A01G490000 chr5B 90.706 269 21 1 2350 2618 8966830 8967094 4.080000e-94 355.0
41 TraesCS2A01G490000 chr5B 99.187 123 1 0 3204 3326 180242960 180242838 4.320000e-54 222.0
42 TraesCS2A01G490000 chr4B 99.187 123 1 0 3204 3326 667181895 667182017 4.320000e-54 222.0
43 TraesCS2A01G490000 chr4B 96.667 90 3 0 374 463 16602477 16602388 2.070000e-32 150.0
44 TraesCS2A01G490000 chr4B 95.699 93 4 0 371 463 392446783 392446875 2.070000e-32 150.0
45 TraesCS2A01G490000 chr4B 95.652 92 4 0 371 462 253683667 253683758 7.430000e-32 148.0
46 TraesCS2A01G490000 chr4B 92.233 103 8 0 368 470 138846358 138846460 2.670000e-31 147.0
47 TraesCS2A01G490000 chr4B 92.308 104 6 2 374 476 167393832 167393934 2.670000e-31 147.0
48 TraesCS2A01G490000 chr5D 97.802 91 2 0 372 462 491871584 491871674 1.240000e-34 158.0
49 TraesCS2A01G490000 chr1D 95.876 97 4 0 373 469 192810004 192809908 1.240000e-34 158.0
50 TraesCS2A01G490000 chr1D 96.629 89 3 0 374 462 472333354 472333266 7.430000e-32 148.0
51 TraesCS2A01G490000 chr1D 93.750 96 5 1 372 467 470924568 470924662 3.460000e-30 143.0
52 TraesCS2A01G490000 chr3B 95.833 96 3 1 371 466 23095354 23095260 1.600000e-33 154.0
53 TraesCS2A01G490000 chrUn 96.667 90 3 0 374 463 37289165 37289254 2.070000e-32 150.0
54 TraesCS2A01G490000 chrUn 96.667 90 3 0 374 463 37292341 37292430 2.070000e-32 150.0
55 TraesCS2A01G490000 chrUn 97.674 86 2 0 374 459 279936215 279936300 7.430000e-32 148.0
56 TraesCS2A01G490000 chrUn 96.629 89 3 0 374 462 289138346 289138434 7.430000e-32 148.0
57 TraesCS2A01G490000 chrUn 97.674 86 2 0 374 459 395541602 395541687 7.430000e-32 148.0
58 TraesCS2A01G490000 chrUn 96.591 88 3 0 373 460 332242546 332242459 2.670000e-31 147.0
59 TraesCS2A01G490000 chrUn 95.556 90 4 0 373 462 37289251 37289162 9.620000e-31 145.0
60 TraesCS2A01G490000 chrUn 95.556 90 4 0 373 462 37292427 37292338 9.620000e-31 145.0
61 TraesCS2A01G490000 chrUn 95.556 90 4 0 374 463 84437838 84437927 9.620000e-31 145.0
62 TraesCS2A01G490000 chrUn 93.684 95 5 1 373 467 12907587 12907680 1.240000e-29 141.0
63 TraesCS2A01G490000 chr6D 96.667 90 3 0 371 460 2103729 2103640 2.070000e-32 150.0
64 TraesCS2A01G490000 chr6D 97.701 87 2 0 373 459 350223148 350223062 2.070000e-32 150.0
65 TraesCS2A01G490000 chr6D 95.604 91 4 0 372 462 391740661 391740571 2.670000e-31 147.0
66 TraesCS2A01G490000 chr6D 95.556 90 4 0 370 459 27179455 27179544 9.620000e-31 145.0
67 TraesCS2A01G490000 chr4D 94.792 96 5 0 372 467 467435757 467435662 2.070000e-32 150.0
68 TraesCS2A01G490000 chr4A 94.792 96 5 0 368 463 42254267 42254362 2.070000e-32 150.0
69 TraesCS2A01G490000 chr7D 93.939 99 5 1 374 472 32004653 32004556 7.430000e-32 148.0
70 TraesCS2A01G490000 chr7D 92.381 105 7 1 357 460 509159232 509159336 7.430000e-32 148.0
71 TraesCS2A01G490000 chr7B 94.792 96 4 1 371 466 536260636 536260542 7.430000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G490000 chr2A 723624342 723627667 3325 False 6143.000 6143 100.000000 1 3326 1 chr2A.!!$F2 3325
1 TraesCS2A01G490000 chr2A 724017137 724018457 1320 True 1426.000 1426 86.186000 1000 2326 1 chr2A.!!$R1 1326
2 TraesCS2A01G490000 chr2A 723867205 723868555 1350 False 1415.000 1415 85.841000 993 2326 1 chr2A.!!$F3 1333
3 TraesCS2A01G490000 chr2B 713791108 713792441 1333 False 1450.000 1450 86.313000 993 2326 1 chr2B.!!$F2 1333
4 TraesCS2A01G490000 chr2B 713939008 713940344 1336 True 1443.000 1443 86.192000 986 2326 1 chr2B.!!$R3 1340
5 TraesCS2A01G490000 chr2B 712888872 712891994 3122 False 872.975 2663 89.530250 43 3202 4 chr2B.!!$F3 3159
6 TraesCS2A01G490000 chr2D 589683514 589684853 1339 True 1461.000 1461 86.384000 986 2326 1 chr2D.!!$R1 1340
7 TraesCS2A01G490000 chr2D 589522761 589524094 1333 False 1456.000 1456 86.387000 993 2326 1 chr2D.!!$F1 1333
8 TraesCS2A01G490000 chr2D 589280183 589284285 4102 False 636.800 2289 91.313833 43 3202 6 chr2D.!!$F2 3159
9 TraesCS2A01G490000 chr6B 686363867 686365096 1229 False 885.000 885 79.775000 1072 2311 1 chr6B.!!$F3 1239
10 TraesCS2A01G490000 chr6A 597788517 597789753 1236 False 833.000 833 79.027000 1072 2315 1 chr6A.!!$F2 1243


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
380 384 0.038526 CAACGACGCAACTACTCCCT 60.039 55.0 0.0 0.0 0.0 4.20 F
387 391 0.108281 GCAACTACTCCCTCCGTTCC 60.108 60.0 0.0 0.0 0.0 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1635 2958 1.114842 CTTCGTCGTCGTTTTCGTCA 58.885 50.000 1.33 0.0 44.46 4.35 R
2341 3693 4.069304 CGGAGGGAGTACATTTCAAAACA 58.931 43.478 0.00 0.0 0.00 2.83 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.922247 CTTAGTCTAAGTATCTGACCACGA 57.078 41.667 10.98 0.00 0.00 4.35
24 25 7.499321 CTTAGTCTAAGTATCTGACCACGAT 57.501 40.000 10.98 0.00 0.00 3.73
25 26 7.493743 TTAGTCTAAGTATCTGACCACGATC 57.506 40.000 0.00 0.00 0.00 3.69
26 27 5.686753 AGTCTAAGTATCTGACCACGATCT 58.313 41.667 0.00 0.00 0.00 2.75
27 28 6.828788 AGTCTAAGTATCTGACCACGATCTA 58.171 40.000 0.00 0.00 0.00 1.98
28 29 6.707161 AGTCTAAGTATCTGACCACGATCTAC 59.293 42.308 0.00 0.00 0.00 2.59
29 30 6.482641 GTCTAAGTATCTGACCACGATCTACA 59.517 42.308 0.00 0.00 0.00 2.74
30 31 7.012138 GTCTAAGTATCTGACCACGATCTACAA 59.988 40.741 0.00 0.00 0.00 2.41
31 32 6.525578 AAGTATCTGACCACGATCTACAAA 57.474 37.500 0.00 0.00 0.00 2.83
32 33 5.892568 AGTATCTGACCACGATCTACAAAC 58.107 41.667 0.00 0.00 0.00 2.93
33 34 5.652891 AGTATCTGACCACGATCTACAAACT 59.347 40.000 0.00 0.00 0.00 2.66
34 35 4.866508 TCTGACCACGATCTACAAACTT 57.133 40.909 0.00 0.00 0.00 2.66
35 36 4.556233 TCTGACCACGATCTACAAACTTG 58.444 43.478 0.00 0.00 0.00 3.16
36 37 3.659786 TGACCACGATCTACAAACTTGG 58.340 45.455 0.00 0.00 0.00 3.61
37 38 3.322541 TGACCACGATCTACAAACTTGGA 59.677 43.478 0.00 0.00 0.00 3.53
38 39 4.202274 TGACCACGATCTACAAACTTGGAA 60.202 41.667 0.00 0.00 0.00 3.53
39 40 4.710324 ACCACGATCTACAAACTTGGAAA 58.290 39.130 0.00 0.00 0.00 3.13
40 41 4.514066 ACCACGATCTACAAACTTGGAAAC 59.486 41.667 0.00 0.00 0.00 2.78
41 42 4.513692 CCACGATCTACAAACTTGGAAACA 59.486 41.667 0.00 0.00 39.83 2.83
73 74 3.413558 GGTAACGTGCACATCGAATTTC 58.586 45.455 18.64 0.00 0.00 2.17
74 75 3.124636 GGTAACGTGCACATCGAATTTCT 59.875 43.478 18.64 0.00 0.00 2.52
102 103 0.535780 ACAGCGTACCCCGATCGATA 60.536 55.000 18.66 3.02 39.56 2.92
126 127 0.610232 ACACCATGCTTCCTCTTGCC 60.610 55.000 0.00 0.00 0.00 4.52
167 168 1.727830 CACGATCAGTACGAGTACGC 58.272 55.000 7.64 0.00 43.96 4.42
196 197 1.299014 GAGCTGAGCCACTCGATCG 60.299 63.158 9.36 9.36 32.35 3.69
231 233 1.202710 AGTTACATCAACCGCACACCA 60.203 47.619 0.00 0.00 37.93 4.17
277 281 1.954382 GACAGGAACACCACCTTTTCC 59.046 52.381 0.00 0.00 39.38 3.13
315 319 9.139174 GAAGGATATTTACACACACAAAATTGG 57.861 33.333 0.00 0.00 0.00 3.16
316 320 8.415950 AGGATATTTACACACACAAAATTGGA 57.584 30.769 0.00 0.00 0.00 3.53
317 321 9.034800 AGGATATTTACACACACAAAATTGGAT 57.965 29.630 0.00 0.00 0.00 3.41
323 327 9.482627 TTTACACACACAAAATTGGATATTTCC 57.517 29.630 0.00 0.00 42.94 3.13
324 328 6.463360 ACACACACAAAATTGGATATTTCCC 58.537 36.000 0.00 0.00 41.83 3.97
325 329 6.042552 ACACACACAAAATTGGATATTTCCCA 59.957 34.615 0.00 0.00 41.83 4.37
326 330 6.591062 CACACACAAAATTGGATATTTCCCAG 59.409 38.462 0.00 0.00 41.83 4.45
327 331 5.581874 CACACAAAATTGGATATTTCCCAGC 59.418 40.000 0.00 0.00 41.83 4.85
328 332 5.118286 CACAAAATTGGATATTTCCCAGCC 58.882 41.667 0.00 0.00 41.83 4.85
329 333 4.164030 ACAAAATTGGATATTTCCCAGCCC 59.836 41.667 0.00 0.00 41.83 5.19
330 334 3.704545 AATTGGATATTTCCCAGCCCA 57.295 42.857 0.00 0.00 41.83 5.36
331 335 3.929245 ATTGGATATTTCCCAGCCCAT 57.071 42.857 0.00 0.00 41.83 4.00
332 336 2.978156 TGGATATTTCCCAGCCCATC 57.022 50.000 0.00 0.00 41.83 3.51
333 337 2.142756 TGGATATTTCCCAGCCCATCA 58.857 47.619 0.00 0.00 41.83 3.07
334 338 2.517553 TGGATATTTCCCAGCCCATCAA 59.482 45.455 0.00 0.00 41.83 2.57
335 339 3.142597 TGGATATTTCCCAGCCCATCAAT 59.857 43.478 0.00 0.00 41.83 2.57
336 340 4.162651 GGATATTTCCCAGCCCATCAATT 58.837 43.478 0.00 0.00 35.84 2.32
337 341 4.594491 GGATATTTCCCAGCCCATCAATTT 59.406 41.667 0.00 0.00 35.84 1.82
338 342 5.072193 GGATATTTCCCAGCCCATCAATTTT 59.928 40.000 0.00 0.00 35.84 1.82
339 343 4.932911 ATTTCCCAGCCCATCAATTTTT 57.067 36.364 0.00 0.00 0.00 1.94
375 379 1.191647 CCAGAACAACGACGCAACTAC 59.808 52.381 0.00 0.00 0.00 2.73
376 380 2.124903 CAGAACAACGACGCAACTACT 58.875 47.619 0.00 0.00 0.00 2.57
379 383 0.319297 ACAACGACGCAACTACTCCC 60.319 55.000 0.00 0.00 0.00 4.30
380 384 0.038526 CAACGACGCAACTACTCCCT 60.039 55.000 0.00 0.00 0.00 4.20
381 385 0.243095 AACGACGCAACTACTCCCTC 59.757 55.000 0.00 0.00 0.00 4.30
382 386 1.139095 CGACGCAACTACTCCCTCC 59.861 63.158 0.00 0.00 0.00 4.30
383 387 1.139095 GACGCAACTACTCCCTCCG 59.861 63.158 0.00 0.00 0.00 4.63
384 388 1.593296 GACGCAACTACTCCCTCCGT 61.593 60.000 0.00 0.00 0.00 4.69
385 389 1.183676 ACGCAACTACTCCCTCCGTT 61.184 55.000 0.00 0.00 0.00 4.44
386 390 0.458025 CGCAACTACTCCCTCCGTTC 60.458 60.000 0.00 0.00 0.00 3.95
387 391 0.108281 GCAACTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
388 392 1.263356 CAACTACTCCCTCCGTTCCA 58.737 55.000 0.00 0.00 0.00 3.53
389 393 1.621814 CAACTACTCCCTCCGTTCCAA 59.378 52.381 0.00 0.00 0.00 3.53
390 394 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
391 395 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
392 396 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
393 397 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
394 398 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
395 399 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
396 400 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
397 401 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
398 402 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
399 403 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
400 404 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
401 405 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
402 406 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
403 407 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
404 408 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
405 409 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
406 410 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
407 411 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
408 412 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
409 413 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
410 414 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
411 415 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
412 416 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
450 454 9.893305 AAAGTTGAGTTATCTATTTTGAAACGG 57.107 29.630 0.00 0.00 0.00 4.44
451 455 8.842358 AGTTGAGTTATCTATTTTGAAACGGA 57.158 30.769 0.00 0.00 0.00 4.69
452 456 8.936864 AGTTGAGTTATCTATTTTGAAACGGAG 58.063 33.333 0.00 0.00 0.00 4.63
453 457 7.843490 TGAGTTATCTATTTTGAAACGGAGG 57.157 36.000 0.00 0.00 0.00 4.30
454 458 6.821665 TGAGTTATCTATTTTGAAACGGAGGG 59.178 38.462 0.00 0.00 0.00 4.30
455 459 6.954232 AGTTATCTATTTTGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
456 460 7.048512 AGTTATCTATTTTGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
457 461 4.903045 TCTATTTTGAAACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
458 462 6.555463 ATCTATTTTGAAACGGAGGGAGTA 57.445 37.500 0.00 0.00 0.00 2.59
459 463 6.555463 TCTATTTTGAAACGGAGGGAGTAT 57.445 37.500 0.00 0.00 0.00 2.12
460 464 7.664552 TCTATTTTGAAACGGAGGGAGTATA 57.335 36.000 0.00 0.00 0.00 1.47
461 465 8.258850 TCTATTTTGAAACGGAGGGAGTATAT 57.741 34.615 0.00 0.00 0.00 0.86
462 466 8.148351 TCTATTTTGAAACGGAGGGAGTATATG 58.852 37.037 0.00 0.00 0.00 1.78
473 477 4.279145 AGGGAGTATATGCGTATGTAGGG 58.721 47.826 8.77 0.00 0.00 3.53
478 482 6.238953 GGAGTATATGCGTATGTAGGGGTATG 60.239 46.154 8.77 0.00 0.00 2.39
526 530 2.399611 GTGGCGGCTCGATTTTCG 59.600 61.111 11.43 0.00 42.10 3.46
554 562 0.535102 ACCAACTCCCAGCGTTGAAG 60.535 55.000 0.00 0.25 43.28 3.02
589 598 1.202604 AGGTACCACCGTTGAACACAG 60.203 52.381 15.94 0.00 44.90 3.66
597 606 2.904866 TTGAACACAGGCGGCACC 60.905 61.111 13.08 0.00 39.61 5.01
710 1979 1.094073 ATGCATGAAGAGCCGCAGAC 61.094 55.000 0.00 0.00 37.88 3.51
723 1992 2.393768 GCAGACATGGTGCTCGTGG 61.394 63.158 13.55 0.00 37.96 4.94
775 2060 0.586802 GCGCCGAGAAATCATAACCC 59.413 55.000 0.00 0.00 0.00 4.11
793 2078 4.510167 ACCCTCACCCAGAAGATAATTG 57.490 45.455 0.00 0.00 0.00 2.32
846 2131 0.459078 GTAGCGTTCACCTACCCTCC 59.541 60.000 0.00 0.00 31.22 4.30
949 2266 1.930817 GCCGCACGGTCATAGACATAG 60.931 57.143 11.27 0.00 37.65 2.23
994 2314 5.599732 TCTTTGTACGTAACCTTGCACTTA 58.400 37.500 0.00 0.00 0.00 2.24
1012 2332 3.134623 ACTTATCGCCATGAAGATCACCA 59.865 43.478 0.00 0.00 0.00 4.17
1221 2541 2.499685 GATTACCGCGAGTGGGCT 59.500 61.111 8.23 0.00 0.00 5.19
1278 2601 4.498520 ATCCTGCTCACCGACGCG 62.499 66.667 3.53 3.53 0.00 6.01
1341 2664 2.874694 CGTCATGCCGATGAAGCCG 61.875 63.158 0.00 0.00 40.39 5.52
1345 2668 3.030168 ATGCCGATGAAGCCGACCA 62.030 57.895 0.00 0.00 0.00 4.02
1580 2903 3.000727 CCTTCTTTAAACCACGCGATCT 58.999 45.455 15.93 0.00 0.00 2.75
1608 2931 3.807538 GAGTACGAGCACCGCGGA 61.808 66.667 35.90 3.57 43.32 5.54
1611 2934 2.436469 TACGAGCACCGCGGAGTA 60.436 61.111 35.90 22.23 43.32 2.59
1633 2956 1.183549 GTTCAAGCCCTACGAGGAGA 58.816 55.000 0.00 0.00 37.67 3.71
1635 2958 2.160721 TCAAGCCCTACGAGGAGATT 57.839 50.000 0.00 0.00 37.67 2.40
1656 2982 0.029300 ACGAAAACGACGACGAAGGA 59.971 50.000 15.32 0.00 42.66 3.36
1955 3299 4.521062 GGCGCAGGAGCTCGTGAT 62.521 66.667 34.33 7.05 39.10 3.06
2009 3353 2.801631 GGGAGGTGGCTCGGATCAG 61.802 68.421 0.00 0.00 0.00 2.90
2330 3682 5.450137 GCTGCTACAACCTCGAGTAGATTTA 60.450 44.000 12.31 0.00 40.02 1.40
2336 3688 5.356190 ACAACCTCGAGTAGATTTACATCGA 59.644 40.000 12.31 13.35 37.24 3.59
2340 3692 5.048643 CCTCGAGTAGATTTACATCGATGGT 60.049 44.000 28.09 16.19 38.04 3.55
2341 3693 6.387041 TCGAGTAGATTTACATCGATGGTT 57.613 37.500 28.09 11.78 36.00 3.67
2342 3694 6.206498 TCGAGTAGATTTACATCGATGGTTG 58.794 40.000 28.09 6.26 36.00 3.77
2344 3696 6.475727 CGAGTAGATTTACATCGATGGTTGTT 59.524 38.462 28.09 10.31 34.89 2.83
2345 3697 7.010183 CGAGTAGATTTACATCGATGGTTGTTT 59.990 37.037 28.09 9.58 34.89 2.83
2347 3699 8.450964 AGTAGATTTACATCGATGGTTGTTTTG 58.549 33.333 28.09 2.72 34.17 2.44
2350 3702 8.356657 AGATTTACATCGATGGTTGTTTTGAAA 58.643 29.630 28.09 13.37 34.17 2.69
2351 3703 9.139174 GATTTACATCGATGGTTGTTTTGAAAT 57.861 29.630 28.09 16.61 0.00 2.17
2352 3704 7.865875 TTACATCGATGGTTGTTTTGAAATG 57.134 32.000 28.09 0.02 0.00 2.32
2362 3714 5.278808 GGTTGTTTTGAAATGTACTCCCTCC 60.279 44.000 0.00 0.00 0.00 4.30
2364 3716 3.343941 TTTGAAATGTACTCCCTCCGG 57.656 47.619 0.00 0.00 0.00 5.14
2367 3719 1.138464 GAAATGTACTCCCTCCGGTCC 59.862 57.143 0.00 0.00 0.00 4.46
2369 3721 0.338814 ATGTACTCCCTCCGGTCCTT 59.661 55.000 0.00 0.00 0.00 3.36
2370 3722 0.115745 TGTACTCCCTCCGGTCCTTT 59.884 55.000 0.00 0.00 0.00 3.11
2371 3723 1.273759 GTACTCCCTCCGGTCCTTTT 58.726 55.000 0.00 0.00 0.00 2.27
2374 3726 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
2375 3727 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
2376 3728 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
2377 3729 1.907255 CCCTCCGGTCCTTTTTACTCT 59.093 52.381 0.00 0.00 0.00 3.24
2379 3731 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
2380 3732 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
2385 3737 5.357032 CCGGTCCTTTTTACTCTGCATATTT 59.643 40.000 0.00 0.00 0.00 1.40
2387 3739 6.093495 CGGTCCTTTTTACTCTGCATATTTGA 59.907 38.462 0.00 0.00 0.00 2.69
2388 3740 7.361713 CGGTCCTTTTTACTCTGCATATTTGAA 60.362 37.037 0.00 0.00 0.00 2.69
2403 3755 8.795513 TGCATATTTGAATTCTCTGAAGTCAAA 58.204 29.630 26.46 26.46 44.62 2.69
2410 3763 8.224389 TGAATTCTCTGAAGTCAAATTTCACA 57.776 30.769 7.05 0.00 31.66 3.58
2412 3765 9.520204 GAATTCTCTGAAGTCAAATTTCACAAA 57.480 29.630 0.00 0.00 31.66 2.83
2417 3770 9.787532 CTCTGAAGTCAAATTTCACAAAGTTTA 57.212 29.630 0.00 0.00 31.66 2.01
2422 3775 9.665719 AAGTCAAATTTCACAAAGTTTAACCAT 57.334 25.926 0.00 0.00 0.00 3.55
2454 3807 6.623486 TGAAAAAGTATCAACATCTGCCATG 58.377 36.000 0.00 0.00 0.00 3.66
2460 3813 4.913335 ATCAACATCTGCCATGCTAAAG 57.087 40.909 0.00 0.00 0.00 1.85
2461 3814 3.689347 TCAACATCTGCCATGCTAAAGT 58.311 40.909 0.00 0.00 0.00 2.66
2466 3819 7.720957 TCAACATCTGCCATGCTAAAGTTATAT 59.279 33.333 0.00 0.00 0.00 0.86
2514 3868 8.581057 CACATCTAGTGGTATTCAGTTCATAC 57.419 38.462 0.00 0.00 44.69 2.39
2515 3869 7.653713 CACATCTAGTGGTATTCAGTTCATACC 59.346 40.741 2.62 2.62 44.65 2.73
2516 3870 6.387041 TCTAGTGGTATTCAGTTCATACCG 57.613 41.667 4.96 0.00 46.59 4.02
2518 3872 4.755411 AGTGGTATTCAGTTCATACCGTG 58.245 43.478 4.96 0.00 46.59 4.94
2519 3873 4.464951 AGTGGTATTCAGTTCATACCGTGA 59.535 41.667 4.96 0.00 46.59 4.35
2534 3888 4.712122 ACCGTGAATGTTGACACTTTTT 57.288 36.364 0.00 0.00 35.23 1.94
2563 3917 2.632228 GTTGGTCAAACTTTACGACGC 58.368 47.619 0.00 0.00 35.75 5.19
2565 3919 2.553086 TGGTCAAACTTTACGACGCTT 58.447 42.857 0.00 0.00 0.00 4.68
2571 3925 4.026310 TCAAACTTTACGACGCTTGACTTC 60.026 41.667 0.00 0.00 0.00 3.01
2572 3926 3.088194 ACTTTACGACGCTTGACTTCA 57.912 42.857 0.00 0.00 0.00 3.02
2573 3927 3.050619 ACTTTACGACGCTTGACTTCAG 58.949 45.455 0.00 0.00 0.00 3.02
2574 3928 2.787601 TTACGACGCTTGACTTCAGT 57.212 45.000 0.00 0.00 0.00 3.41
2575 3929 2.327081 TACGACGCTTGACTTCAGTC 57.673 50.000 0.00 0.00 44.97 3.51
2626 4015 2.918712 CGGAGGGAGTATCTGCAATT 57.081 50.000 0.00 0.00 33.73 2.32
2642 4031 5.408299 TCTGCAATTCCACGTATACATATGC 59.592 40.000 1.58 4.18 0.00 3.14
2680 4069 1.227342 TGCATGCACTACGTGTGGTG 61.227 55.000 18.46 11.63 46.27 4.17
2701 4090 5.778750 GGTGCTATAGTAAAGGAGTATGGGA 59.221 44.000 0.84 0.00 0.00 4.37
2757 4146 5.296283 TCTCTGGTAAGTTGTCGCTAGATAC 59.704 44.000 0.00 0.00 0.00 2.24
2758 4147 5.191426 TCTGGTAAGTTGTCGCTAGATACT 58.809 41.667 0.00 0.00 0.00 2.12
2759 4148 5.066117 TCTGGTAAGTTGTCGCTAGATACTG 59.934 44.000 0.00 0.00 0.00 2.74
2760 4149 4.703575 TGGTAAGTTGTCGCTAGATACTGT 59.296 41.667 0.00 0.00 0.00 3.55
2761 4150 5.882000 TGGTAAGTTGTCGCTAGATACTGTA 59.118 40.000 0.00 0.00 0.00 2.74
2831 4220 6.683610 GCAGTGGCCATAAAAATGTGTCATAT 60.684 38.462 9.72 0.00 0.00 1.78
2832 4221 6.698329 CAGTGGCCATAAAAATGTGTCATATG 59.302 38.462 9.72 0.00 0.00 1.78
2852 4266 2.014068 GCCAGAGATTGTGTGTAGGGC 61.014 57.143 0.00 0.00 0.00 5.19
2883 4297 0.689055 TGTGAGGATGCTGAGTTGCT 59.311 50.000 0.00 0.00 0.00 3.91
2896 4310 4.913924 GCTGAGTTGCTAACACAAAATCTG 59.086 41.667 0.00 0.00 31.69 2.90
2902 4316 4.130857 TGCTAACACAAAATCTGGTTCGA 58.869 39.130 0.00 0.00 0.00 3.71
2921 4354 5.966636 TCGATTGTGTTCTTCATTATCCG 57.033 39.130 0.00 0.00 0.00 4.18
2935 4368 4.506288 TCATTATCCGTGTGTTCAATAGCG 59.494 41.667 0.00 0.00 0.00 4.26
2936 4369 2.380084 ATCCGTGTGTTCAATAGCGT 57.620 45.000 0.00 0.00 0.00 5.07
2947 4380 6.017523 TGTGTTCAATAGCGTGAATTTTCTCA 60.018 34.615 4.23 0.00 39.61 3.27
2948 4381 6.303259 GTGTTCAATAGCGTGAATTTTCTCAC 59.697 38.462 4.23 3.66 39.61 3.51
2969 4402 7.707464 TCTCACGATTAAGTTTGACTTGTTACA 59.293 33.333 3.70 0.00 39.11 2.41
2982 4415 4.920376 ACTTGTTACAACACACATGAAGC 58.080 39.130 0.00 0.00 38.92 3.86
3050 4485 7.731882 TTTTAAATATGGATGACGCGGAATA 57.268 32.000 12.47 0.00 0.00 1.75
3090 4525 9.798994 AAAATGAGAAGATGCATGATTTAACTC 57.201 29.630 2.46 3.06 0.00 3.01
3131 4566 7.369803 ACAACAGTCTCATGTTTATGATGTC 57.630 36.000 0.00 0.00 41.41 3.06
3138 4573 5.814188 TCTCATGTTTATGATGTCTGTGCTC 59.186 40.000 0.00 0.00 42.19 4.26
3142 4577 6.426980 TGTTTATGATGTCTGTGCTCATTC 57.573 37.500 0.00 0.00 32.20 2.67
3152 4588 0.744771 GTGCTCATTCGGACCCTTCC 60.745 60.000 0.00 0.00 38.77 3.46
3173 4609 0.995675 CTCCTCCCATGGGTTCCCAT 60.996 60.000 30.28 16.78 46.76 4.00
3182 4618 0.178975 TGGGTTCCCATGCGAAAACT 60.179 50.000 6.46 0.00 0.00 2.66
3188 4624 2.091541 TCCCATGCGAAAACTCAATCC 58.908 47.619 0.00 0.00 0.00 3.01
3193 4629 4.082571 CCATGCGAAAACTCAATCCTTTCT 60.083 41.667 0.00 0.00 0.00 2.52
3194 4630 5.123820 CCATGCGAAAACTCAATCCTTTCTA 59.876 40.000 0.00 0.00 0.00 2.10
3202 4638 6.765915 AACTCAATCCTTTCTAGATTTGGC 57.234 37.500 0.00 0.00 31.56 4.52
3203 4639 4.878397 ACTCAATCCTTTCTAGATTTGGCG 59.122 41.667 0.00 0.00 31.56 5.69
3204 4640 4.843728 TCAATCCTTTCTAGATTTGGCGT 58.156 39.130 0.00 0.00 31.56 5.68
3205 4641 4.876107 TCAATCCTTTCTAGATTTGGCGTC 59.124 41.667 0.00 0.00 31.56 5.19
3206 4642 2.888594 TCCTTTCTAGATTTGGCGTCG 58.111 47.619 0.00 0.00 0.00 5.12
3207 4643 1.933853 CCTTTCTAGATTTGGCGTCGG 59.066 52.381 0.00 0.00 0.00 4.79
3208 4644 2.618053 CTTTCTAGATTTGGCGTCGGT 58.382 47.619 0.00 0.00 0.00 4.69
3209 4645 2.004583 TTCTAGATTTGGCGTCGGTG 57.995 50.000 0.00 0.00 0.00 4.94
3210 4646 0.892755 TCTAGATTTGGCGTCGGTGT 59.107 50.000 0.00 0.00 0.00 4.16
3211 4647 1.135199 TCTAGATTTGGCGTCGGTGTC 60.135 52.381 0.00 0.00 0.00 3.67
3212 4648 0.457166 TAGATTTGGCGTCGGTGTCG 60.457 55.000 0.00 0.00 37.82 4.35
3213 4649 2.025418 GATTTGGCGTCGGTGTCGT 61.025 57.895 0.00 0.00 37.69 4.34
3214 4650 2.222953 GATTTGGCGTCGGTGTCGTG 62.223 60.000 0.00 0.00 37.69 4.35
3215 4651 4.953868 TTGGCGTCGGTGTCGTGG 62.954 66.667 0.00 0.00 37.69 4.94
3217 4653 4.955774 GGCGTCGGTGTCGTGGTT 62.956 66.667 0.00 0.00 37.69 3.67
3218 4654 3.400590 GCGTCGGTGTCGTGGTTC 61.401 66.667 0.00 0.00 37.69 3.62
3219 4655 2.333938 CGTCGGTGTCGTGGTTCT 59.666 61.111 0.00 0.00 37.69 3.01
3220 4656 1.575922 CGTCGGTGTCGTGGTTCTA 59.424 57.895 0.00 0.00 37.69 2.10
3221 4657 0.040157 CGTCGGTGTCGTGGTTCTAA 60.040 55.000 0.00 0.00 37.69 2.10
3222 4658 1.694639 GTCGGTGTCGTGGTTCTAAG 58.305 55.000 0.00 0.00 37.69 2.18
3223 4659 0.038892 TCGGTGTCGTGGTTCTAAGC 60.039 55.000 0.00 0.00 37.69 3.09
3224 4660 1.012486 CGGTGTCGTGGTTCTAAGCC 61.012 60.000 0.00 0.00 0.00 4.35
3225 4661 0.320697 GGTGTCGTGGTTCTAAGCCT 59.679 55.000 0.00 0.00 0.00 4.58
3226 4662 1.429463 GTGTCGTGGTTCTAAGCCTG 58.571 55.000 0.00 0.00 0.00 4.85
3227 4663 1.000506 GTGTCGTGGTTCTAAGCCTGA 59.999 52.381 0.00 0.00 0.00 3.86
3228 4664 1.000506 TGTCGTGGTTCTAAGCCTGAC 59.999 52.381 6.65 6.65 34.77 3.51
3229 4665 1.000506 GTCGTGGTTCTAAGCCTGACA 59.999 52.381 8.06 0.00 34.53 3.58
3230 4666 1.272490 TCGTGGTTCTAAGCCTGACAG 59.728 52.381 0.00 0.00 0.00 3.51
3231 4667 1.000955 CGTGGTTCTAAGCCTGACAGT 59.999 52.381 0.93 0.00 0.00 3.55
3232 4668 2.230508 CGTGGTTCTAAGCCTGACAGTA 59.769 50.000 0.93 0.00 0.00 2.74
3233 4669 3.673594 CGTGGTTCTAAGCCTGACAGTAG 60.674 52.174 0.93 0.00 0.00 2.57
3234 4670 3.510360 GTGGTTCTAAGCCTGACAGTAGA 59.490 47.826 0.93 0.00 0.00 2.59
3235 4671 3.764434 TGGTTCTAAGCCTGACAGTAGAG 59.236 47.826 0.93 0.00 0.00 2.43
3236 4672 3.764972 GGTTCTAAGCCTGACAGTAGAGT 59.235 47.826 0.93 0.00 0.00 3.24
3237 4673 4.381079 GGTTCTAAGCCTGACAGTAGAGTG 60.381 50.000 0.93 0.00 0.00 3.51
3238 4674 3.357203 TCTAAGCCTGACAGTAGAGTGG 58.643 50.000 0.93 0.00 0.00 4.00
3239 4675 1.270907 AAGCCTGACAGTAGAGTGGG 58.729 55.000 0.93 0.00 0.00 4.61
3240 4676 0.616111 AGCCTGACAGTAGAGTGGGG 60.616 60.000 0.93 0.00 0.00 4.96
3241 4677 1.617947 GCCTGACAGTAGAGTGGGGG 61.618 65.000 0.93 0.00 0.00 5.40
3257 4693 1.057471 GGGGGTAGGTATTGAGAGGC 58.943 60.000 0.00 0.00 0.00 4.70
3258 4694 1.694693 GGGGGTAGGTATTGAGAGGCA 60.695 57.143 0.00 0.00 0.00 4.75
3259 4695 2.124411 GGGGTAGGTATTGAGAGGCAA 58.876 52.381 0.00 0.00 41.53 4.52
3260 4696 2.104963 GGGGTAGGTATTGAGAGGCAAG 59.895 54.545 0.00 0.00 40.42 4.01
3261 4697 2.104963 GGGTAGGTATTGAGAGGCAAGG 59.895 54.545 0.00 0.00 40.42 3.61
3262 4698 2.772515 GGTAGGTATTGAGAGGCAAGGT 59.227 50.000 0.00 0.00 40.42 3.50
3263 4699 3.181464 GGTAGGTATTGAGAGGCAAGGTC 60.181 52.174 0.00 0.00 40.42 3.85
3264 4700 1.840635 AGGTATTGAGAGGCAAGGTCC 59.159 52.381 0.00 0.00 40.42 4.46
3265 4701 1.840635 GGTATTGAGAGGCAAGGTCCT 59.159 52.381 0.00 0.00 40.42 3.85
3266 4702 3.039011 GGTATTGAGAGGCAAGGTCCTA 58.961 50.000 0.00 0.00 40.42 2.94
3267 4703 3.070302 GGTATTGAGAGGCAAGGTCCTAG 59.930 52.174 0.00 0.00 40.42 3.02
3268 4704 0.905357 TTGAGAGGCAAGGTCCTAGC 59.095 55.000 0.00 0.00 36.38 3.42
3269 4705 0.041833 TGAGAGGCAAGGTCCTAGCT 59.958 55.000 0.00 0.00 36.38 3.32
3270 4706 1.288037 TGAGAGGCAAGGTCCTAGCTA 59.712 52.381 0.00 0.00 36.38 3.32
3271 4707 2.091055 TGAGAGGCAAGGTCCTAGCTAT 60.091 50.000 0.00 0.00 36.38 2.97
3272 4708 2.298729 GAGAGGCAAGGTCCTAGCTATG 59.701 54.545 0.00 0.00 36.38 2.23
3273 4709 1.346068 GAGGCAAGGTCCTAGCTATGG 59.654 57.143 0.00 0.00 36.38 2.74
3274 4710 1.062121 AGGCAAGGTCCTAGCTATGGA 60.062 52.381 7.59 7.59 33.95 3.41
3275 4711 1.346068 GGCAAGGTCCTAGCTATGGAG 59.654 57.143 10.98 3.25 33.78 3.86
3276 4712 2.320781 GCAAGGTCCTAGCTATGGAGA 58.679 52.381 10.98 0.00 33.78 3.71
3277 4713 2.298729 GCAAGGTCCTAGCTATGGAGAG 59.701 54.545 10.98 4.83 33.78 3.20
3278 4714 2.896685 CAAGGTCCTAGCTATGGAGAGG 59.103 54.545 10.98 2.28 33.78 3.69
3279 4715 2.148702 AGGTCCTAGCTATGGAGAGGT 58.851 52.381 10.98 0.00 33.78 3.85
3280 4716 2.520549 AGGTCCTAGCTATGGAGAGGTT 59.479 50.000 10.98 0.00 33.78 3.50
3281 4717 2.630580 GGTCCTAGCTATGGAGAGGTTG 59.369 54.545 10.98 0.00 33.78 3.77
3282 4718 3.301274 GTCCTAGCTATGGAGAGGTTGT 58.699 50.000 10.98 0.00 33.78 3.32
3283 4719 4.471548 GTCCTAGCTATGGAGAGGTTGTA 58.528 47.826 10.98 0.00 33.78 2.41
3284 4720 4.894114 GTCCTAGCTATGGAGAGGTTGTAA 59.106 45.833 10.98 0.00 33.78 2.41
3285 4721 5.010213 GTCCTAGCTATGGAGAGGTTGTAAG 59.990 48.000 10.98 0.00 33.78 2.34
3286 4722 3.828875 AGCTATGGAGAGGTTGTAAGC 57.171 47.619 0.00 0.00 0.00 3.09
3287 4723 3.107601 AGCTATGGAGAGGTTGTAAGCA 58.892 45.455 0.00 0.00 0.00 3.91
3288 4724 3.118592 AGCTATGGAGAGGTTGTAAGCAC 60.119 47.826 0.00 0.00 0.00 4.40
3289 4725 3.369471 GCTATGGAGAGGTTGTAAGCACA 60.369 47.826 0.00 0.00 0.00 4.57
3290 4726 3.788227 ATGGAGAGGTTGTAAGCACAA 57.212 42.857 0.00 0.00 42.39 3.33
3291 4727 3.569194 TGGAGAGGTTGTAAGCACAAA 57.431 42.857 0.00 0.00 45.99 2.83
3292 4728 3.476552 TGGAGAGGTTGTAAGCACAAAG 58.523 45.455 0.00 0.00 45.99 2.77
3293 4729 2.814336 GGAGAGGTTGTAAGCACAAAGG 59.186 50.000 0.00 0.00 45.99 3.11
3294 4730 3.496160 GGAGAGGTTGTAAGCACAAAGGA 60.496 47.826 0.00 0.00 45.99 3.36
3295 4731 4.327680 GAGAGGTTGTAAGCACAAAGGAT 58.672 43.478 0.00 0.00 45.99 3.24
3296 4732 4.074970 AGAGGTTGTAAGCACAAAGGATG 58.925 43.478 0.00 0.00 45.99 3.51
3297 4733 3.821033 GAGGTTGTAAGCACAAAGGATGT 59.179 43.478 0.00 0.00 45.99 3.06
3298 4734 4.980573 AGGTTGTAAGCACAAAGGATGTA 58.019 39.130 0.00 0.00 45.99 2.29
3299 4735 4.760204 AGGTTGTAAGCACAAAGGATGTAC 59.240 41.667 0.00 0.00 45.99 2.90
3300 4736 4.378046 GGTTGTAAGCACAAAGGATGTACG 60.378 45.833 0.00 0.00 45.99 3.67
3301 4737 4.260139 TGTAAGCACAAAGGATGTACGA 57.740 40.909 0.00 0.00 41.46 3.43
3302 4738 4.242475 TGTAAGCACAAAGGATGTACGAG 58.758 43.478 0.00 0.00 41.46 4.18
3303 4739 3.402628 AAGCACAAAGGATGTACGAGT 57.597 42.857 0.00 0.00 41.46 4.18
3304 4740 3.402628 AGCACAAAGGATGTACGAGTT 57.597 42.857 0.00 0.00 41.46 3.01
3305 4741 3.326747 AGCACAAAGGATGTACGAGTTC 58.673 45.455 0.00 0.00 41.46 3.01
3306 4742 3.064207 GCACAAAGGATGTACGAGTTCA 58.936 45.455 0.00 0.00 41.46 3.18
3307 4743 3.123621 GCACAAAGGATGTACGAGTTCAG 59.876 47.826 0.00 0.00 41.46 3.02
3308 4744 3.679980 CACAAAGGATGTACGAGTTCAGG 59.320 47.826 0.00 0.00 41.46 3.86
3309 4745 2.673368 CAAAGGATGTACGAGTTCAGGC 59.327 50.000 0.00 0.00 0.00 4.85
3310 4746 0.824759 AGGATGTACGAGTTCAGGCC 59.175 55.000 0.00 0.00 0.00 5.19
3311 4747 0.179081 GGATGTACGAGTTCAGGCCC 60.179 60.000 0.00 0.00 0.00 5.80
3312 4748 0.824759 GATGTACGAGTTCAGGCCCT 59.175 55.000 0.00 0.00 0.00 5.19
3313 4749 1.207329 GATGTACGAGTTCAGGCCCTT 59.793 52.381 0.00 0.00 0.00 3.95
3314 4750 0.606604 TGTACGAGTTCAGGCCCTTC 59.393 55.000 0.00 0.00 0.00 3.46
3315 4751 0.896226 GTACGAGTTCAGGCCCTTCT 59.104 55.000 0.00 0.00 0.00 2.85
3316 4752 1.135053 GTACGAGTTCAGGCCCTTCTC 60.135 57.143 0.00 1.73 0.00 2.87
3317 4753 1.153745 CGAGTTCAGGCCCTTCTCG 60.154 63.158 17.87 17.87 41.02 4.04
3318 4754 1.219393 GAGTTCAGGCCCTTCTCGG 59.781 63.158 0.00 0.00 0.00 4.63
3319 4755 1.229209 AGTTCAGGCCCTTCTCGGA 60.229 57.895 0.00 0.00 33.16 4.55
3320 4756 0.836400 AGTTCAGGCCCTTCTCGGAA 60.836 55.000 0.00 0.00 33.16 4.30
3321 4757 0.391793 GTTCAGGCCCTTCTCGGAAG 60.392 60.000 0.00 6.66 33.16 3.46
3322 4758 0.544357 TTCAGGCCCTTCTCGGAAGA 60.544 55.000 13.28 0.00 39.12 2.87
3323 4759 0.544357 TCAGGCCCTTCTCGGAAGAA 60.544 55.000 13.28 1.41 41.32 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.686753 AGATCGTGGTCAGATACTTAGACT 58.313 41.667 0.00 0.00 32.98 3.24
4 5 6.482641 TGTAGATCGTGGTCAGATACTTAGAC 59.517 42.308 0.00 0.00 0.00 2.59
5 6 6.589135 TGTAGATCGTGGTCAGATACTTAGA 58.411 40.000 0.00 0.00 0.00 2.10
7 8 7.338703 AGTTTGTAGATCGTGGTCAGATACTTA 59.661 37.037 0.00 0.00 0.00 2.24
8 9 6.153000 AGTTTGTAGATCGTGGTCAGATACTT 59.847 38.462 0.00 0.00 0.00 2.24
9 10 5.652891 AGTTTGTAGATCGTGGTCAGATACT 59.347 40.000 0.00 0.00 0.00 2.12
10 11 5.892568 AGTTTGTAGATCGTGGTCAGATAC 58.107 41.667 0.00 0.00 0.00 2.24
11 12 6.330278 CAAGTTTGTAGATCGTGGTCAGATA 58.670 40.000 0.00 0.00 0.00 1.98
12 13 5.171476 CAAGTTTGTAGATCGTGGTCAGAT 58.829 41.667 0.00 0.00 0.00 2.90
13 14 4.556233 CAAGTTTGTAGATCGTGGTCAGA 58.444 43.478 0.00 0.00 0.00 3.27
14 15 3.679980 CCAAGTTTGTAGATCGTGGTCAG 59.320 47.826 0.00 0.00 0.00 3.51
15 16 3.322541 TCCAAGTTTGTAGATCGTGGTCA 59.677 43.478 0.00 0.00 33.70 4.02
16 17 3.921677 TCCAAGTTTGTAGATCGTGGTC 58.078 45.455 0.00 0.00 33.70 4.02
17 18 4.345859 TTCCAAGTTTGTAGATCGTGGT 57.654 40.909 0.00 0.00 33.70 4.16
18 19 4.513692 TGTTTCCAAGTTTGTAGATCGTGG 59.486 41.667 0.00 0.00 33.36 4.94
19 20 5.440685 GTGTTTCCAAGTTTGTAGATCGTG 58.559 41.667 0.00 0.00 0.00 4.35
20 21 4.210537 CGTGTTTCCAAGTTTGTAGATCGT 59.789 41.667 0.00 0.00 0.00 3.73
21 22 4.698276 CGTGTTTCCAAGTTTGTAGATCG 58.302 43.478 0.00 0.00 0.00 3.69
22 23 4.213482 AGCGTGTTTCCAAGTTTGTAGATC 59.787 41.667 0.00 0.00 0.00 2.75
23 24 4.134563 AGCGTGTTTCCAAGTTTGTAGAT 58.865 39.130 0.00 0.00 0.00 1.98
24 25 3.537580 AGCGTGTTTCCAAGTTTGTAGA 58.462 40.909 0.00 0.00 0.00 2.59
25 26 3.603857 CGAGCGTGTTTCCAAGTTTGTAG 60.604 47.826 0.00 0.00 0.00 2.74
26 27 2.285756 CGAGCGTGTTTCCAAGTTTGTA 59.714 45.455 0.00 0.00 0.00 2.41
27 28 1.063469 CGAGCGTGTTTCCAAGTTTGT 59.937 47.619 0.00 0.00 0.00 2.83
28 29 1.329292 TCGAGCGTGTTTCCAAGTTTG 59.671 47.619 0.00 0.00 0.00 2.93
29 30 1.658994 TCGAGCGTGTTTCCAAGTTT 58.341 45.000 0.00 0.00 0.00 2.66
30 31 1.798813 GATCGAGCGTGTTTCCAAGTT 59.201 47.619 0.00 0.00 0.00 2.66
31 32 1.429463 GATCGAGCGTGTTTCCAAGT 58.571 50.000 0.00 0.00 0.00 3.16
32 33 0.366871 CGATCGAGCGTGTTTCCAAG 59.633 55.000 16.15 0.00 0.00 3.61
33 34 1.011968 CCGATCGAGCGTGTTTCCAA 61.012 55.000 22.70 0.00 0.00 3.53
34 35 1.445410 CCGATCGAGCGTGTTTCCA 60.445 57.895 22.70 0.00 0.00 3.53
35 36 2.165301 CCCGATCGAGCGTGTTTCC 61.165 63.158 22.70 0.00 0.00 3.13
36 37 0.179156 TACCCGATCGAGCGTGTTTC 60.179 55.000 22.70 0.00 0.00 2.78
37 38 0.244450 TTACCCGATCGAGCGTGTTT 59.756 50.000 22.70 5.31 0.00 2.83
38 39 0.457337 GTTACCCGATCGAGCGTGTT 60.457 55.000 22.70 7.91 0.00 3.32
39 40 1.138247 GTTACCCGATCGAGCGTGT 59.862 57.895 22.70 19.56 0.00 4.49
40 41 1.937846 CGTTACCCGATCGAGCGTG 60.938 63.158 22.70 13.85 39.56 5.34
41 42 2.401766 ACGTTACCCGATCGAGCGT 61.402 57.895 22.70 13.88 40.70 5.07
73 74 4.111016 TACGCTGTCGACCGCCAG 62.111 66.667 23.71 14.38 39.41 4.85
74 75 4.409218 GTACGCTGTCGACCGCCA 62.409 66.667 23.71 10.98 39.41 5.69
88 89 1.229428 TCGTGTATCGATCGGGGTAC 58.771 55.000 16.41 15.45 44.01 3.34
102 103 0.320771 GAGGAAGCATGGTGTCGTGT 60.321 55.000 0.00 0.00 32.65 4.49
108 109 1.318158 GGGCAAGAGGAAGCATGGTG 61.318 60.000 0.00 0.00 0.00 4.17
126 127 0.538516 TGTGGGACGTGGAAAATGGG 60.539 55.000 0.00 0.00 0.00 4.00
167 168 1.297664 GCTCAGCTCCTAGCACAATG 58.702 55.000 7.24 0.00 45.56 2.82
315 319 5.813513 AAATTGATGGGCTGGGAAATATC 57.186 39.130 0.00 0.00 0.00 1.63
316 320 6.579850 AAAAATTGATGGGCTGGGAAATAT 57.420 33.333 0.00 0.00 0.00 1.28
318 322 4.932911 AAAAATTGATGGGCTGGGAAAT 57.067 36.364 0.00 0.00 0.00 2.17
354 358 1.157870 AGTTGCGTCGTTGTTCTGGG 61.158 55.000 0.00 0.00 0.00 4.45
375 379 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
376 380 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
379 383 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
380 384 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
381 385 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
382 386 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
383 387 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
384 388 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
385 389 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
386 390 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
424 428 9.893305 CCGTTTCAAAATAGATAACTCAACTTT 57.107 29.630 0.00 0.00 0.00 2.66
425 429 9.280174 TCCGTTTCAAAATAGATAACTCAACTT 57.720 29.630 0.00 0.00 0.00 2.66
426 430 8.842358 TCCGTTTCAAAATAGATAACTCAACT 57.158 30.769 0.00 0.00 0.00 3.16
427 431 8.175716 CCTCCGTTTCAAAATAGATAACTCAAC 58.824 37.037 0.00 0.00 0.00 3.18
428 432 7.335924 CCCTCCGTTTCAAAATAGATAACTCAA 59.664 37.037 0.00 0.00 0.00 3.02
429 433 6.821665 CCCTCCGTTTCAAAATAGATAACTCA 59.178 38.462 0.00 0.00 0.00 3.41
430 434 7.046033 TCCCTCCGTTTCAAAATAGATAACTC 58.954 38.462 0.00 0.00 0.00 3.01
431 435 6.954232 TCCCTCCGTTTCAAAATAGATAACT 58.046 36.000 0.00 0.00 0.00 2.24
432 436 6.822170 ACTCCCTCCGTTTCAAAATAGATAAC 59.178 38.462 0.00 0.00 0.00 1.89
433 437 6.954232 ACTCCCTCCGTTTCAAAATAGATAA 58.046 36.000 0.00 0.00 0.00 1.75
434 438 6.555463 ACTCCCTCCGTTTCAAAATAGATA 57.445 37.500 0.00 0.00 0.00 1.98
435 439 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
436 440 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
437 441 7.095187 GCATATACTCCCTCCGTTTCAAAATAG 60.095 40.741 0.00 0.00 0.00 1.73
438 442 6.708949 GCATATACTCCCTCCGTTTCAAAATA 59.291 38.462 0.00 0.00 0.00 1.40
439 443 5.531287 GCATATACTCCCTCCGTTTCAAAAT 59.469 40.000 0.00 0.00 0.00 1.82
440 444 4.879545 GCATATACTCCCTCCGTTTCAAAA 59.120 41.667 0.00 0.00 0.00 2.44
441 445 4.448210 GCATATACTCCCTCCGTTTCAAA 58.552 43.478 0.00 0.00 0.00 2.69
442 446 3.491964 CGCATATACTCCCTCCGTTTCAA 60.492 47.826 0.00 0.00 0.00 2.69
443 447 2.035449 CGCATATACTCCCTCCGTTTCA 59.965 50.000 0.00 0.00 0.00 2.69
444 448 2.035576 ACGCATATACTCCCTCCGTTTC 59.964 50.000 0.00 0.00 0.00 2.78
445 449 2.037144 ACGCATATACTCCCTCCGTTT 58.963 47.619 0.00 0.00 0.00 3.60
446 450 1.700955 ACGCATATACTCCCTCCGTT 58.299 50.000 0.00 0.00 0.00 4.44
447 451 2.574006 TACGCATATACTCCCTCCGT 57.426 50.000 0.00 0.00 0.00 4.69
448 452 2.753452 ACATACGCATATACTCCCTCCG 59.247 50.000 0.00 0.00 0.00 4.63
449 453 4.338682 CCTACATACGCATATACTCCCTCC 59.661 50.000 0.00 0.00 0.00 4.30
450 454 4.338682 CCCTACATACGCATATACTCCCTC 59.661 50.000 0.00 0.00 0.00 4.30
451 455 4.279145 CCCTACATACGCATATACTCCCT 58.721 47.826 0.00 0.00 0.00 4.20
452 456 3.383825 CCCCTACATACGCATATACTCCC 59.616 52.174 0.00 0.00 0.00 4.30
453 457 4.021916 ACCCCTACATACGCATATACTCC 58.978 47.826 0.00 0.00 0.00 3.85
454 458 6.320672 ACATACCCCTACATACGCATATACTC 59.679 42.308 0.00 0.00 0.00 2.59
455 459 6.192773 ACATACCCCTACATACGCATATACT 58.807 40.000 0.00 0.00 0.00 2.12
456 460 6.460676 GGACATACCCCTACATACGCATATAC 60.461 46.154 0.00 0.00 0.00 1.47
457 461 5.595542 GGACATACCCCTACATACGCATATA 59.404 44.000 0.00 0.00 0.00 0.86
458 462 4.404715 GGACATACCCCTACATACGCATAT 59.595 45.833 0.00 0.00 0.00 1.78
459 463 3.765511 GGACATACCCCTACATACGCATA 59.234 47.826 0.00 0.00 0.00 3.14
460 464 2.565834 GGACATACCCCTACATACGCAT 59.434 50.000 0.00 0.00 0.00 4.73
461 465 1.965643 GGACATACCCCTACATACGCA 59.034 52.381 0.00 0.00 0.00 5.24
462 466 1.068055 CGGACATACCCCTACATACGC 60.068 57.143 0.00 0.00 34.64 4.42
473 477 0.035820 TTGGGCTGAACGGACATACC 60.036 55.000 0.00 0.00 0.00 2.73
478 482 0.035739 TAGGTTTGGGCTGAACGGAC 59.964 55.000 0.00 0.00 0.00 4.79
526 530 1.968540 GGGAGTTGGTGAGCAGTGC 60.969 63.158 7.13 7.13 0.00 4.40
597 606 2.380410 GCACTGTAGCCGGTTGACG 61.380 63.158 1.90 0.00 43.80 4.35
723 1992 1.443872 CGTGGACGTGTACTGCTCC 60.444 63.158 0.00 0.00 34.11 4.70
775 2060 7.786030 TCTCTAACAATTATCTTCTGGGTGAG 58.214 38.462 0.00 0.00 0.00 3.51
793 2078 8.830201 ATGTCAGCTGAATATGATTCTCTAAC 57.170 34.615 20.19 0.73 0.00 2.34
846 2131 6.091305 TGTTAATGCACGAGAAGAGATCAAAG 59.909 38.462 0.00 0.00 0.00 2.77
949 2266 8.926715 AAGAAAACAAAAACCTTGTATCACTC 57.073 30.769 0.00 0.00 31.50 3.51
994 2314 2.501261 CATGGTGATCTTCATGGCGAT 58.499 47.619 16.10 0.00 37.63 4.58
1012 2332 3.474570 GGGCCTGGACGAGAGCAT 61.475 66.667 0.84 0.00 0.00 3.79
1206 2526 4.077184 CCAGCCCACTCGCGGTAA 62.077 66.667 6.13 0.00 0.00 2.85
1345 2668 3.699894 CAGGCTCAGCACCTCCGT 61.700 66.667 0.00 0.00 34.42 4.69
1589 2912 2.577112 CGCGGTGCTCGTACTCAG 60.577 66.667 0.00 0.00 41.72 3.35
1608 2931 3.018149 CTCGTAGGGCTTGAACTCTACT 58.982 50.000 0.55 0.00 32.33 2.57
1611 2934 1.187087 CCTCGTAGGGCTTGAACTCT 58.813 55.000 0.00 0.00 0.00 3.24
1633 2956 1.757574 TCGTCGTCGTTTTCGTCAAT 58.242 45.000 1.33 0.00 44.46 2.57
1635 2958 1.114842 CTTCGTCGTCGTTTTCGTCA 58.885 50.000 1.33 0.00 44.46 4.35
2009 3353 4.493747 ACTCGAAGTAGCCGCCGC 62.494 66.667 0.00 0.00 0.00 6.53
2330 3682 5.841810 ACATTTCAAAACAACCATCGATGT 58.158 33.333 23.27 9.39 0.00 3.06
2336 3688 5.838521 AGGGAGTACATTTCAAAACAACCAT 59.161 36.000 0.00 0.00 0.00 3.55
2340 3692 4.517453 CGGAGGGAGTACATTTCAAAACAA 59.483 41.667 0.00 0.00 0.00 2.83
2341 3693 4.069304 CGGAGGGAGTACATTTCAAAACA 58.931 43.478 0.00 0.00 0.00 2.83
2342 3694 4.680171 CGGAGGGAGTACATTTCAAAAC 57.320 45.455 0.00 0.00 0.00 2.43
2362 3714 6.093495 TCAAATATGCAGAGTAAAAAGGACCG 59.907 38.462 0.00 0.00 0.00 4.79
2364 3716 9.860898 AATTCAAATATGCAGAGTAAAAAGGAC 57.139 29.630 0.00 0.00 0.00 3.85
2370 3722 9.671279 TCAGAGAATTCAAATATGCAGAGTAAA 57.329 29.630 8.44 0.00 0.00 2.01
2371 3723 9.671279 TTCAGAGAATTCAAATATGCAGAGTAA 57.329 29.630 8.44 0.00 0.00 2.24
2374 3726 8.211116 ACTTCAGAGAATTCAAATATGCAGAG 57.789 34.615 8.44 0.00 0.00 3.35
2375 3727 7.825761 TGACTTCAGAGAATTCAAATATGCAGA 59.174 33.333 8.44 0.00 0.00 4.26
2376 3728 7.982224 TGACTTCAGAGAATTCAAATATGCAG 58.018 34.615 8.44 0.00 0.00 4.41
2377 3729 7.926674 TGACTTCAGAGAATTCAAATATGCA 57.073 32.000 8.44 0.00 0.00 3.96
2385 3737 8.224389 TGTGAAATTTGACTTCAGAGAATTCA 57.776 30.769 8.44 0.00 33.56 2.57
2387 3739 9.525409 CTTTGTGAAATTTGACTTCAGAGAATT 57.475 29.630 9.24 0.00 33.56 2.17
2388 3740 8.689972 ACTTTGTGAAATTTGACTTCAGAGAAT 58.310 29.630 9.24 0.00 33.56 2.40
2391 3743 8.693542 AAACTTTGTGAAATTTGACTTCAGAG 57.306 30.769 9.24 3.08 33.56 3.35
2394 3746 9.145865 GGTTAAACTTTGTGAAATTTGACTTCA 57.854 29.630 9.24 0.00 0.00 3.02
2395 3747 9.145865 TGGTTAAACTTTGTGAAATTTGACTTC 57.854 29.630 9.24 0.00 0.00 3.01
2428 3781 7.936496 TGGCAGATGTTGATACTTTTTCATA 57.064 32.000 0.00 0.00 0.00 2.15
2430 3783 6.623486 CATGGCAGATGTTGATACTTTTTCA 58.377 36.000 0.00 0.00 0.00 2.69
2431 3784 5.517770 GCATGGCAGATGTTGATACTTTTTC 59.482 40.000 0.00 0.00 0.00 2.29
2436 3789 3.572632 AGCATGGCAGATGTTGATACT 57.427 42.857 0.00 0.00 0.00 2.12
2437 3790 5.297776 ACTTTAGCATGGCAGATGTTGATAC 59.702 40.000 0.00 0.00 0.00 2.24
2441 3794 4.445452 AACTTTAGCATGGCAGATGTTG 57.555 40.909 0.00 0.00 0.00 3.33
2470 3823 8.627208 AGATGTGTCATGACTTAAAGTTTCAT 57.373 30.769 25.55 14.42 0.00 2.57
2472 3825 9.209175 ACTAGATGTGTCATGACTTAAAGTTTC 57.791 33.333 25.55 11.27 0.00 2.78
2476 3829 7.099764 ACCACTAGATGTGTCATGACTTAAAG 58.900 38.462 25.55 16.54 44.81 1.85
2477 3830 7.004555 ACCACTAGATGTGTCATGACTTAAA 57.995 36.000 25.55 9.66 44.81 1.52
2478 3831 6.605471 ACCACTAGATGTGTCATGACTTAA 57.395 37.500 25.55 12.04 44.81 1.85
2479 3832 7.898014 ATACCACTAGATGTGTCATGACTTA 57.102 36.000 25.55 15.01 44.81 2.24
2481 3834 6.381133 TGAATACCACTAGATGTGTCATGACT 59.619 38.462 25.55 6.60 44.81 3.41
2489 3843 7.653713 GGTATGAACTGAATACCACTAGATGTG 59.346 40.741 0.00 0.00 46.03 3.21
2490 3844 7.470147 CGGTATGAACTGAATACCACTAGATGT 60.470 40.741 11.94 0.00 46.77 3.06
2491 3845 6.863645 CGGTATGAACTGAATACCACTAGATG 59.136 42.308 11.94 0.00 46.77 2.90
2510 3864 5.356882 AAAGTGTCAACATTCACGGTATG 57.643 39.130 0.00 0.00 39.25 2.39
2511 3865 6.385649 AAAAAGTGTCAACATTCACGGTAT 57.614 33.333 0.00 0.00 39.25 2.73
2534 3888 7.333921 TCGTAAAGTTTGACCAACTAAGTGAAA 59.666 33.333 0.00 0.00 45.77 2.69
2536 3890 6.256321 GTCGTAAAGTTTGACCAACTAAGTGA 59.744 38.462 0.00 0.00 45.77 3.41
2537 3891 6.416514 GTCGTAAAGTTTGACCAACTAAGTG 58.583 40.000 0.00 0.00 45.77 3.16
2539 3893 5.663292 CGTCGTAAAGTTTGACCAACTAAG 58.337 41.667 0.00 0.00 45.77 2.18
2540 3894 4.025813 GCGTCGTAAAGTTTGACCAACTAA 60.026 41.667 0.00 0.00 45.77 2.24
2541 3895 3.490526 GCGTCGTAAAGTTTGACCAACTA 59.509 43.478 0.00 0.00 45.77 2.24
2543 3897 2.286025 AGCGTCGTAAAGTTTGACCAAC 59.714 45.455 0.00 0.00 35.32 3.77
2556 3910 2.327081 GACTGAAGTCAAGCGTCGTA 57.673 50.000 5.58 0.00 44.18 3.43
2557 3911 3.180984 GACTGAAGTCAAGCGTCGT 57.819 52.632 5.58 0.00 44.18 4.34
2586 3940 6.416415 TCCGGTCCTTTTTAGTTTGCATATA 58.584 36.000 0.00 0.00 0.00 0.86
2588 3942 4.653868 TCCGGTCCTTTTTAGTTTGCATA 58.346 39.130 0.00 0.00 0.00 3.14
2589 3943 3.492337 TCCGGTCCTTTTTAGTTTGCAT 58.508 40.909 0.00 0.00 0.00 3.96
2591 3945 2.228103 CCTCCGGTCCTTTTTAGTTTGC 59.772 50.000 0.00 0.00 0.00 3.68
2592 3946 2.817844 CCCTCCGGTCCTTTTTAGTTTG 59.182 50.000 0.00 0.00 0.00 2.93
2593 3947 2.712627 TCCCTCCGGTCCTTTTTAGTTT 59.287 45.455 0.00 0.00 0.00 2.66
2595 3949 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
2596 3950 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
2597 3951 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
2598 3952 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
2599 3953 2.117051 GATACTCCCTCCGGTCCTTTT 58.883 52.381 0.00 0.00 0.00 2.27
2600 3954 1.291335 AGATACTCCCTCCGGTCCTTT 59.709 52.381 0.00 0.00 0.00 3.11
2601 3955 0.935194 AGATACTCCCTCCGGTCCTT 59.065 55.000 0.00 0.00 0.00 3.36
2606 3960 1.051812 ATTGCAGATACTCCCTCCGG 58.948 55.000 0.00 0.00 0.00 5.14
2624 4013 4.151689 GCAACGCATATGTATACGTGGAAT 59.848 41.667 7.89 0.00 35.98 3.01
2626 4015 3.054166 GCAACGCATATGTATACGTGGA 58.946 45.455 7.89 0.00 35.98 4.02
2653 4042 0.304705 GTAGTGCATGCATACACGCC 59.695 55.000 25.64 13.52 41.72 5.68
2680 4069 9.476928 TTCTATCCCATACTCCTTTACTATAGC 57.523 37.037 0.00 0.00 0.00 2.97
2685 4074 9.315363 CATACTTCTATCCCATACTCCTTTACT 57.685 37.037 0.00 0.00 0.00 2.24
2730 4119 3.093057 AGCGACAACTTACCAGAGAGAT 58.907 45.455 0.00 0.00 0.00 2.75
2794 4183 1.243342 GCCACTGCTATGTTGCACCA 61.243 55.000 0.00 0.00 38.12 4.17
2831 4220 1.278985 CCCTACACACAATCTCTGGCA 59.721 52.381 0.00 0.00 0.00 4.92
2832 4221 2.014068 GCCCTACACACAATCTCTGGC 61.014 57.143 0.00 0.00 0.00 4.85
2852 4266 3.558505 CATCCTCACAAAACTGAAAGCG 58.441 45.455 0.00 0.00 37.60 4.68
2883 4297 6.038825 ACACAATCGAACCAGATTTTGTGTTA 59.961 34.615 19.03 0.00 44.88 2.41
2896 4310 6.487103 GGATAATGAAGAACACAATCGAACC 58.513 40.000 0.00 0.00 0.00 3.62
2902 4316 5.705441 ACACACGGATAATGAAGAACACAAT 59.295 36.000 0.00 0.00 0.00 2.71
2921 4354 6.142817 AGAAAATTCACGCTATTGAACACAC 58.857 36.000 0.00 0.00 38.31 3.82
2947 4380 7.906527 GTGTTGTAACAAGTCAAACTTAATCGT 59.093 33.333 0.00 0.00 41.21 3.73
2948 4381 7.906010 TGTGTTGTAACAAGTCAAACTTAATCG 59.094 33.333 0.00 0.00 41.21 3.34
2969 4402 4.655963 ACCTATTCAGCTTCATGTGTGTT 58.344 39.130 0.00 0.00 0.00 3.32
2982 4415 4.744795 AAGCACCTACAGACCTATTCAG 57.255 45.455 0.00 0.00 0.00 3.02
3025 4458 6.438259 TTCCGCGTCATCCATATTTAAAAA 57.562 33.333 4.92 0.00 0.00 1.94
3026 4459 6.627395 ATTCCGCGTCATCCATATTTAAAA 57.373 33.333 4.92 0.00 0.00 1.52
3027 4460 7.604545 TGATATTCCGCGTCATCCATATTTAAA 59.395 33.333 4.92 0.00 0.00 1.52
3029 4462 6.635755 TGATATTCCGCGTCATCCATATTTA 58.364 36.000 4.92 0.00 0.00 1.40
3043 4478 3.390135 TGACCGAAGATTGATATTCCGC 58.610 45.455 0.00 0.00 0.00 5.54
3046 4481 8.830580 TCTCATTTTGACCGAAGATTGATATTC 58.169 33.333 0.00 0.00 0.00 1.75
3050 4485 6.881065 TCTTCTCATTTTGACCGAAGATTGAT 59.119 34.615 5.55 0.00 34.68 2.57
3108 4543 7.118825 ACAGACATCATAAACATGAGACTGTTG 59.881 37.037 0.00 0.29 39.25 3.33
3110 4545 6.592994 CACAGACATCATAAACATGAGACTGT 59.407 38.462 0.00 13.30 39.79 3.55
3111 4546 6.456584 GCACAGACATCATAAACATGAGACTG 60.457 42.308 0.00 12.50 36.26 3.51
3131 4566 0.036010 AAGGGTCCGAATGAGCACAG 60.036 55.000 0.00 0.00 43.44 3.66
3138 4573 1.527370 GAGGGGAAGGGTCCGAATG 59.473 63.158 0.00 0.00 46.04 2.67
3142 4577 2.764547 GAGGAGGGGAAGGGTCCG 60.765 72.222 0.00 0.00 46.04 4.79
3173 4609 5.547465 TCTAGAAAGGATTGAGTTTTCGCA 58.453 37.500 0.00 0.00 36.27 5.10
3175 4611 7.965107 CCAAATCTAGAAAGGATTGAGTTTTCG 59.035 37.037 0.00 0.00 36.27 3.46
3182 4618 4.843728 ACGCCAAATCTAGAAAGGATTGA 58.156 39.130 11.44 0.00 34.19 2.57
3188 4624 2.348666 CACCGACGCCAAATCTAGAAAG 59.651 50.000 0.00 0.00 0.00 2.62
3193 4629 0.457166 CGACACCGACGCCAAATCTA 60.457 55.000 0.00 0.00 38.22 1.98
3194 4630 1.736645 CGACACCGACGCCAAATCT 60.737 57.895 0.00 0.00 38.22 2.40
3202 4638 0.040157 TTAGAACCACGACACCGACG 60.040 55.000 0.00 0.00 39.50 5.12
3203 4639 1.694639 CTTAGAACCACGACACCGAC 58.305 55.000 0.00 0.00 39.50 4.79
3204 4640 0.038892 GCTTAGAACCACGACACCGA 60.039 55.000 0.00 0.00 39.50 4.69
3205 4641 1.012486 GGCTTAGAACCACGACACCG 61.012 60.000 0.00 0.00 42.50 4.94
3206 4642 0.320697 AGGCTTAGAACCACGACACC 59.679 55.000 0.00 0.00 0.00 4.16
3207 4643 1.000506 TCAGGCTTAGAACCACGACAC 59.999 52.381 0.00 0.00 0.00 3.67
3208 4644 1.000506 GTCAGGCTTAGAACCACGACA 59.999 52.381 0.00 0.00 34.01 4.35
3209 4645 1.000506 TGTCAGGCTTAGAACCACGAC 59.999 52.381 0.00 0.00 34.27 4.34
3210 4646 1.272490 CTGTCAGGCTTAGAACCACGA 59.728 52.381 0.00 0.00 0.00 4.35
3211 4647 1.000955 ACTGTCAGGCTTAGAACCACG 59.999 52.381 4.53 0.00 0.00 4.94
3212 4648 2.841442 ACTGTCAGGCTTAGAACCAC 57.159 50.000 4.53 0.00 0.00 4.16
3213 4649 3.764434 CTCTACTGTCAGGCTTAGAACCA 59.236 47.826 4.53 0.00 0.00 3.67
3214 4650 3.764972 ACTCTACTGTCAGGCTTAGAACC 59.235 47.826 4.53 0.00 0.00 3.62
3215 4651 4.381079 CCACTCTACTGTCAGGCTTAGAAC 60.381 50.000 4.53 0.00 0.00 3.01
3216 4652 3.764434 CCACTCTACTGTCAGGCTTAGAA 59.236 47.826 4.53 0.00 0.00 2.10
3217 4653 3.357203 CCACTCTACTGTCAGGCTTAGA 58.643 50.000 4.53 2.00 0.00 2.10
3218 4654 2.428890 CCCACTCTACTGTCAGGCTTAG 59.571 54.545 4.53 0.00 0.00 2.18
3219 4655 2.457598 CCCACTCTACTGTCAGGCTTA 58.542 52.381 4.53 0.00 0.00 3.09
3220 4656 1.270907 CCCACTCTACTGTCAGGCTT 58.729 55.000 4.53 0.00 0.00 4.35
3221 4657 0.616111 CCCCACTCTACTGTCAGGCT 60.616 60.000 4.53 0.00 0.00 4.58
3222 4658 1.617947 CCCCCACTCTACTGTCAGGC 61.618 65.000 4.53 0.00 0.00 4.85
3223 4659 2.596776 CCCCCACTCTACTGTCAGG 58.403 63.158 4.53 0.00 0.00 3.86
3238 4674 1.057471 GCCTCTCAATACCTACCCCC 58.943 60.000 0.00 0.00 0.00 5.40
3239 4675 1.802553 TGCCTCTCAATACCTACCCC 58.197 55.000 0.00 0.00 0.00 4.95
3240 4676 2.104963 CCTTGCCTCTCAATACCTACCC 59.895 54.545 0.00 0.00 33.57 3.69
3241 4677 2.772515 ACCTTGCCTCTCAATACCTACC 59.227 50.000 0.00 0.00 33.57 3.18
3242 4678 3.181464 GGACCTTGCCTCTCAATACCTAC 60.181 52.174 0.00 0.00 33.57 3.18
3243 4679 3.039011 GGACCTTGCCTCTCAATACCTA 58.961 50.000 0.00 0.00 33.57 3.08
3244 4680 1.840635 GGACCTTGCCTCTCAATACCT 59.159 52.381 0.00 0.00 33.57 3.08
3245 4681 1.840635 AGGACCTTGCCTCTCAATACC 59.159 52.381 0.00 0.00 30.76 2.73
3246 4682 3.493524 GCTAGGACCTTGCCTCTCAATAC 60.494 52.174 16.20 0.00 39.50 1.89
3247 4683 2.700897 GCTAGGACCTTGCCTCTCAATA 59.299 50.000 16.20 0.00 39.50 1.90
3248 4684 1.488393 GCTAGGACCTTGCCTCTCAAT 59.512 52.381 16.20 0.00 39.50 2.57
3249 4685 0.905357 GCTAGGACCTTGCCTCTCAA 59.095 55.000 16.20 0.00 39.50 3.02
3250 4686 0.041833 AGCTAGGACCTTGCCTCTCA 59.958 55.000 22.23 0.00 39.50 3.27
3251 4687 2.074729 TAGCTAGGACCTTGCCTCTC 57.925 55.000 22.23 0.00 39.50 3.20
3252 4688 2.324541 CATAGCTAGGACCTTGCCTCT 58.675 52.381 22.23 8.59 39.50 3.69
3253 4689 1.346068 CCATAGCTAGGACCTTGCCTC 59.654 57.143 22.23 0.00 39.50 4.70
3254 4690 1.062121 TCCATAGCTAGGACCTTGCCT 60.062 52.381 22.23 13.04 42.15 4.75
3255 4691 1.346068 CTCCATAGCTAGGACCTTGCC 59.654 57.143 22.23 6.76 33.03 4.52
3256 4692 2.298729 CTCTCCATAGCTAGGACCTTGC 59.701 54.545 18.95 18.95 32.79 4.01
3257 4693 2.896685 CCTCTCCATAGCTAGGACCTTG 59.103 54.545 7.04 0.00 0.00 3.61
3258 4694 2.520549 ACCTCTCCATAGCTAGGACCTT 59.479 50.000 7.04 0.00 33.16 3.50
3259 4695 2.148702 ACCTCTCCATAGCTAGGACCT 58.851 52.381 7.04 0.00 33.16 3.85
3260 4696 2.630580 CAACCTCTCCATAGCTAGGACC 59.369 54.545 7.04 0.00 33.16 4.46
3261 4697 3.301274 ACAACCTCTCCATAGCTAGGAC 58.699 50.000 7.04 0.00 33.16 3.85
3262 4698 3.689872 ACAACCTCTCCATAGCTAGGA 57.310 47.619 7.04 9.11 33.16 2.94
3263 4699 4.262249 GCTTACAACCTCTCCATAGCTAGG 60.262 50.000 0.00 0.00 35.14 3.02
3264 4700 4.342378 TGCTTACAACCTCTCCATAGCTAG 59.658 45.833 0.00 0.00 0.00 3.42
3265 4701 4.099573 GTGCTTACAACCTCTCCATAGCTA 59.900 45.833 0.00 0.00 0.00 3.32
3266 4702 3.107601 TGCTTACAACCTCTCCATAGCT 58.892 45.455 0.00 0.00 0.00 3.32
3267 4703 3.198872 GTGCTTACAACCTCTCCATAGC 58.801 50.000 0.00 0.00 0.00 2.97
3268 4704 4.471904 TGTGCTTACAACCTCTCCATAG 57.528 45.455 0.00 0.00 0.00 2.23
3269 4705 4.901197 TTGTGCTTACAACCTCTCCATA 57.099 40.909 0.00 0.00 0.00 2.74
3270 4706 3.788227 TTGTGCTTACAACCTCTCCAT 57.212 42.857 0.00 0.00 0.00 3.41
3271 4707 3.476552 CTTTGTGCTTACAACCTCTCCA 58.523 45.455 0.00 0.00 0.00 3.86
3272 4708 2.814336 CCTTTGTGCTTACAACCTCTCC 59.186 50.000 0.00 0.00 0.00 3.71
3273 4709 3.740115 TCCTTTGTGCTTACAACCTCTC 58.260 45.455 0.00 0.00 0.00 3.20
3274 4710 3.857157 TCCTTTGTGCTTACAACCTCT 57.143 42.857 0.00 0.00 0.00 3.69
3275 4711 3.821033 ACATCCTTTGTGCTTACAACCTC 59.179 43.478 0.00 0.00 37.11 3.85
3276 4712 3.832527 ACATCCTTTGTGCTTACAACCT 58.167 40.909 0.00 0.00 37.11 3.50
3277 4713 4.378046 CGTACATCCTTTGTGCTTACAACC 60.378 45.833 0.00 0.00 38.66 3.77
3278 4714 4.449743 TCGTACATCCTTTGTGCTTACAAC 59.550 41.667 0.00 0.00 38.66 3.32
3279 4715 4.633175 TCGTACATCCTTTGTGCTTACAA 58.367 39.130 0.00 0.00 38.66 2.41
3280 4716 4.242475 CTCGTACATCCTTTGTGCTTACA 58.758 43.478 0.00 0.00 38.66 2.41
3281 4717 4.243270 ACTCGTACATCCTTTGTGCTTAC 58.757 43.478 0.00 0.00 38.66 2.34
3282 4718 4.530710 ACTCGTACATCCTTTGTGCTTA 57.469 40.909 0.00 0.00 38.66 3.09
3283 4719 3.402628 ACTCGTACATCCTTTGTGCTT 57.597 42.857 0.00 0.00 38.66 3.91
3284 4720 3.244078 TGAACTCGTACATCCTTTGTGCT 60.244 43.478 0.00 0.00 38.66 4.40
3285 4721 3.064207 TGAACTCGTACATCCTTTGTGC 58.936 45.455 0.00 0.00 39.48 4.57
3286 4722 3.679980 CCTGAACTCGTACATCCTTTGTG 59.320 47.826 0.00 0.00 39.48 3.33
3287 4723 3.864921 GCCTGAACTCGTACATCCTTTGT 60.865 47.826 0.00 0.00 42.62 2.83
3288 4724 2.673368 GCCTGAACTCGTACATCCTTTG 59.327 50.000 0.00 0.00 0.00 2.77
3289 4725 2.354805 GGCCTGAACTCGTACATCCTTT 60.355 50.000 0.00 0.00 0.00 3.11
3290 4726 1.207329 GGCCTGAACTCGTACATCCTT 59.793 52.381 0.00 0.00 0.00 3.36
3291 4727 0.824759 GGCCTGAACTCGTACATCCT 59.175 55.000 0.00 0.00 0.00 3.24
3292 4728 0.179081 GGGCCTGAACTCGTACATCC 60.179 60.000 0.84 0.00 0.00 3.51
3293 4729 0.824759 AGGGCCTGAACTCGTACATC 59.175 55.000 4.50 0.00 0.00 3.06
3294 4730 1.207329 GAAGGGCCTGAACTCGTACAT 59.793 52.381 6.92 0.00 0.00 2.29
3295 4731 0.606604 GAAGGGCCTGAACTCGTACA 59.393 55.000 6.92 0.00 0.00 2.90
3296 4732 0.896226 AGAAGGGCCTGAACTCGTAC 59.104 55.000 6.92 0.00 0.00 3.67
3297 4733 1.183549 GAGAAGGGCCTGAACTCGTA 58.816 55.000 6.92 0.00 0.00 3.43
3298 4734 1.878656 CGAGAAGGGCCTGAACTCGT 61.879 60.000 31.25 9.99 43.19 4.18
3299 4735 1.153745 CGAGAAGGGCCTGAACTCG 60.154 63.158 29.13 29.13 42.77 4.18
3300 4736 1.219393 CCGAGAAGGGCCTGAACTC 59.781 63.158 6.92 15.44 35.97 3.01
3301 4737 0.836400 TTCCGAGAAGGGCCTGAACT 60.836 55.000 6.92 7.41 41.52 3.01
3302 4738 0.391793 CTTCCGAGAAGGGCCTGAAC 60.392 60.000 6.92 1.62 41.52 3.18
3303 4739 0.544357 TCTTCCGAGAAGGGCCTGAA 60.544 55.000 6.92 4.77 41.52 3.02
3304 4740 0.544357 TTCTTCCGAGAAGGGCCTGA 60.544 55.000 6.92 0.00 41.52 3.86
3305 4741 1.983224 TTCTTCCGAGAAGGGCCTG 59.017 57.895 6.92 0.00 41.52 4.85
3306 4742 4.561155 TTCTTCCGAGAAGGGCCT 57.439 55.556 0.00 0.00 41.52 5.19



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.