Multiple sequence alignment - TraesCS2A01G489800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G489800 chr2A 100.000 5437 0 0 1 5437 723538088 723543524 0.000000e+00 10041.0
1 TraesCS2A01G489800 chr2A 98.043 971 16 3 4468 5437 34554616 34555584 0.000000e+00 1685.0
2 TraesCS2A01G489800 chr2A 98.480 658 10 0 4780 5437 34548520 34549177 0.000000e+00 1160.0
3 TraesCS2A01G489800 chr2D 93.640 2956 117 19 505 3443 589000613 589003514 0.000000e+00 4351.0
4 TraesCS2A01G489800 chr2D 98.519 878 13 0 3599 4476 589003493 589004370 0.000000e+00 1550.0
5 TraesCS2A01G489800 chr2B 95.924 1693 56 4 1763 3443 712617421 712619112 0.000000e+00 2732.0
6 TraesCS2A01G489800 chr2B 95.558 878 36 1 3599 4476 712619091 712619965 0.000000e+00 1402.0
7 TraesCS2A01G489800 chr2B 87.463 1013 81 19 545 1541 712616223 712617205 0.000000e+00 1125.0
8 TraesCS2A01G489800 chr2B 93.956 182 11 0 1549 1730 712617242 712617423 5.360000e-70 276.0
9 TraesCS2A01G489800 chr4A 97.609 962 21 2 4476 5437 568559898 568560857 0.000000e+00 1648.0
10 TraesCS2A01G489800 chr5A 99.002 902 7 2 4537 5437 573736841 573735941 0.000000e+00 1615.0
11 TraesCS2A01G489800 chr5A 87.972 424 46 3 1 420 636973276 636972854 3.780000e-136 496.0
12 TraesCS2A01G489800 chr5A 97.143 175 4 1 3439 3612 426934116 426934290 1.480000e-75 294.0
13 TraesCS2A01G489800 chr6A 96.362 962 20 10 4476 5437 616719118 616718172 0.000000e+00 1568.0
14 TraesCS2A01G489800 chr6A 82.791 430 62 8 1 420 513760641 513761068 1.850000e-99 374.0
15 TraesCS2A01G489800 chr4D 94.974 975 43 6 4466 5437 344573638 344574609 0.000000e+00 1524.0
16 TraesCS2A01G489800 chr4D 84.282 439 58 5 1 428 354833076 354833514 8.420000e-113 418.0
17 TraesCS2A01G489800 chr4D 83.294 425 60 10 1 420 19401074 19401492 1.110000e-101 381.0
18 TraesCS2A01G489800 chr4D 100.000 161 0 0 3439 3599 478512343 478512183 1.140000e-76 298.0
19 TraesCS2A01G489800 chr7A 91.681 577 43 4 4822 5397 396982711 396982139 0.000000e+00 795.0
20 TraesCS2A01G489800 chr7A 74.801 1385 320 21 2075 3443 94490208 94488837 1.010000e-166 597.0
21 TraesCS2A01G489800 chr7A 87.868 272 31 2 4478 4749 396983210 396982941 8.790000e-83 318.0
22 TraesCS2A01G489800 chr7A 98.795 166 2 0 3438 3603 63424880 63424715 4.120000e-76 296.0
23 TraesCS2A01G489800 chr7B 92.477 545 36 5 4747 5288 355676987 355676445 0.000000e+00 774.0
24 TraesCS2A01G489800 chr7B 91.383 499 38 3 4747 5242 355848988 355848492 0.000000e+00 678.0
25 TraesCS2A01G489800 chr7B 94.350 177 7 3 5257 5433 355676426 355676253 8.980000e-68 268.0
26 TraesCS2A01G489800 chr7B 87.069 116 15 0 4284 4399 44788087 44787972 1.230000e-26 132.0
27 TraesCS2A01G489800 chr1D 85.714 434 55 5 1 428 477866647 477867079 8.300000e-123 451.0
28 TraesCS2A01G489800 chr5D 83.945 436 59 5 1 428 84261276 84261708 1.820000e-109 407.0
29 TraesCS2A01G489800 chr7D 92.171 281 19 2 4747 5025 350162922 350163201 1.420000e-105 394.0
30 TraesCS2A01G489800 chr7D 84.108 409 59 5 1 405 140764615 140765021 1.840000e-104 390.0
31 TraesCS2A01G489800 chr7D 89.818 275 26 2 4475 4749 350162461 350162733 8.660000e-93 351.0
32 TraesCS2A01G489800 chr7D 90.580 138 13 0 1864 2001 34756865 34757002 3.340000e-42 183.0
33 TraesCS2A01G489800 chr7D 90.580 138 13 0 1864 2001 447053503 447053640 3.340000e-42 183.0
34 TraesCS2A01G489800 chr7D 89.855 138 14 0 1864 2001 375400917 375400780 1.560000e-40 178.0
35 TraesCS2A01G489800 chr7D 89.855 138 13 1 1865 2001 454079230 454079093 5.600000e-40 176.0
36 TraesCS2A01G489800 chr7D 84.810 79 8 4 4475 4550 530075871 530075794 5.840000e-10 76.8
37 TraesCS2A01G489800 chr1B 82.688 439 61 11 25 455 489198065 489198496 5.140000e-100 375.0
38 TraesCS2A01G489800 chr1B 100.000 162 0 0 3439 3600 33923220 33923059 3.180000e-77 300.0
39 TraesCS2A01G489800 chr3D 82.599 431 67 4 1 428 20754719 20755144 1.850000e-99 374.0
40 TraesCS2A01G489800 chr3D 84.810 79 8 4 4475 4550 32159182 32159259 5.840000e-10 76.8
41 TraesCS2A01G489800 chr5B 100.000 162 0 0 3439 3600 544855873 544855712 3.180000e-77 300.0
42 TraesCS2A01G489800 chr5B 98.810 168 0 2 3439 3605 214934762 214934928 1.140000e-76 298.0
43 TraesCS2A01G489800 chr1A 100.000 162 0 0 3439 3600 583789291 583789130 3.180000e-77 300.0
44 TraesCS2A01G489800 chr4B 100.000 161 0 0 3439 3599 455621606 455621446 1.140000e-76 298.0
45 TraesCS2A01G489800 chr3A 99.394 165 0 1 3439 3602 402276705 402276869 1.140000e-76 298.0
46 TraesCS2A01G489800 chr3A 89.286 140 15 0 1860 1999 251035757 251035896 5.600000e-40 176.0
47 TraesCS2A01G489800 chr3A 86.765 68 5 4 4466 4530 709126975 709127041 7.550000e-09 73.1
48 TraesCS2A01G489800 chr6D 89.781 137 14 0 1865 2001 410398279 410398415 5.600000e-40 176.0
49 TraesCS2A01G489800 chr6B 89.781 137 14 0 1865 2001 617176582 617176718 5.600000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G489800 chr2A 723538088 723543524 5436 False 10041.00 10041 100.00000 1 5437 1 chr2A.!!$F3 5436
1 TraesCS2A01G489800 chr2A 34554616 34555584 968 False 1685.00 1685 98.04300 4468 5437 1 chr2A.!!$F2 969
2 TraesCS2A01G489800 chr2A 34548520 34549177 657 False 1160.00 1160 98.48000 4780 5437 1 chr2A.!!$F1 657
3 TraesCS2A01G489800 chr2D 589000613 589004370 3757 False 2950.50 4351 96.07950 505 4476 2 chr2D.!!$F1 3971
4 TraesCS2A01G489800 chr2B 712616223 712619965 3742 False 1383.75 2732 93.22525 545 4476 4 chr2B.!!$F1 3931
5 TraesCS2A01G489800 chr4A 568559898 568560857 959 False 1648.00 1648 97.60900 4476 5437 1 chr4A.!!$F1 961
6 TraesCS2A01G489800 chr5A 573735941 573736841 900 True 1615.00 1615 99.00200 4537 5437 1 chr5A.!!$R1 900
7 TraesCS2A01G489800 chr6A 616718172 616719118 946 True 1568.00 1568 96.36200 4476 5437 1 chr6A.!!$R1 961
8 TraesCS2A01G489800 chr4D 344573638 344574609 971 False 1524.00 1524 94.97400 4466 5437 1 chr4D.!!$F2 971
9 TraesCS2A01G489800 chr7A 94488837 94490208 1371 True 597.00 597 74.80100 2075 3443 1 chr7A.!!$R2 1368
10 TraesCS2A01G489800 chr7A 396982139 396983210 1071 True 556.50 795 89.77450 4478 5397 2 chr7A.!!$R3 919
11 TraesCS2A01G489800 chr7B 355676253 355676987 734 True 521.00 774 93.41350 4747 5433 2 chr7B.!!$R3 686
12 TraesCS2A01G489800 chr7D 350162461 350163201 740 False 372.50 394 90.99450 4475 5025 2 chr7D.!!$F4 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 222 0.037326 GACGAGAGACCAATGTGCCA 60.037 55.0 0.00 0.0 0.00 4.92 F
667 671 0.037605 ACCATCCGTCGTCTCCAAAC 60.038 55.0 0.00 0.0 0.00 2.93 F
769 773 0.741221 ATCTCCGGCGAGCTTTTGAC 60.741 55.0 9.30 0.0 35.94 3.18 F
1464 1482 1.244019 GGCGCCTGTCCATCAGTTTT 61.244 55.0 22.15 0.0 42.19 2.43 F
3182 3266 0.179004 TTTCCGGTCCAGTGCAATGT 60.179 50.0 13.82 0.0 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1560 1610 0.251354 TGCTGGTCTCCAAGATGCTC 59.749 55.000 0.00 0.0 30.80 4.26 R
1723 1773 1.296392 CTCATCACAAGGCCACCGA 59.704 57.895 5.01 0.0 0.00 4.69 R
1724 1774 2.401766 GCTCATCACAAGGCCACCG 61.402 63.158 5.01 0.0 0.00 4.94 R
3444 3528 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.0 44.78 4.85 R
4594 4678 1.475213 GGAAAGGAGGATAAGCGGTGG 60.475 57.143 0.00 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.897122 GGCTGTGTGGTGGGGGAA 61.897 66.667 0.00 0.00 0.00 3.97
32 33 2.282462 GCTGTGTGGTGGGGGAAG 60.282 66.667 0.00 0.00 0.00 3.46
33 34 2.282462 CTGTGTGGTGGGGGAAGC 60.282 66.667 0.00 0.00 0.00 3.86
34 35 3.099841 TGTGTGGTGGGGGAAGCA 61.100 61.111 0.00 0.00 0.00 3.91
35 36 2.282462 GTGTGGTGGGGGAAGCAG 60.282 66.667 0.00 0.00 0.00 4.24
36 37 4.284550 TGTGGTGGGGGAAGCAGC 62.285 66.667 0.00 0.00 0.00 5.25
43 44 4.329545 GGGGAAGCAGCGGTGTGA 62.330 66.667 17.07 0.00 0.00 3.58
44 45 2.281484 GGGAAGCAGCGGTGTGAA 60.281 61.111 17.07 0.00 0.00 3.18
45 46 2.328099 GGGAAGCAGCGGTGTGAAG 61.328 63.158 17.07 0.00 0.00 3.02
46 47 2.558313 GAAGCAGCGGTGTGAAGC 59.442 61.111 17.07 0.48 0.00 3.86
47 48 2.203195 AAGCAGCGGTGTGAAGCA 60.203 55.556 17.07 0.00 35.48 3.91
48 49 2.180131 GAAGCAGCGGTGTGAAGCAG 62.180 60.000 17.07 0.00 35.48 4.24
49 50 2.947938 AAGCAGCGGTGTGAAGCAGT 62.948 55.000 17.07 0.00 35.48 4.40
50 51 2.546494 GCAGCGGTGTGAAGCAGTT 61.546 57.895 17.07 0.00 35.48 3.16
51 52 2.024918 CAGCGGTGTGAAGCAGTTT 58.975 52.632 6.41 0.00 35.48 2.66
52 53 0.317269 CAGCGGTGTGAAGCAGTTTG 60.317 55.000 6.41 0.00 35.48 2.93
53 54 1.658409 GCGGTGTGAAGCAGTTTGC 60.658 57.895 0.00 0.00 45.46 3.68
117 118 3.129502 CGGTGCTGGGCAGATGTG 61.130 66.667 0.00 0.00 40.08 3.21
118 119 2.753043 GGTGCTGGGCAGATGTGG 60.753 66.667 0.00 0.00 40.08 4.17
119 120 2.352422 GTGCTGGGCAGATGTGGA 59.648 61.111 0.00 0.00 40.08 4.02
120 121 1.748122 GTGCTGGGCAGATGTGGAG 60.748 63.158 0.00 0.00 40.08 3.86
121 122 2.124403 GCTGGGCAGATGTGGAGG 60.124 66.667 0.00 0.00 0.00 4.30
122 123 2.124403 CTGGGCAGATGTGGAGGC 60.124 66.667 0.00 0.00 0.00 4.70
123 124 4.100084 TGGGCAGATGTGGAGGCG 62.100 66.667 0.00 0.00 0.00 5.52
124 125 4.864334 GGGCAGATGTGGAGGCGG 62.864 72.222 0.00 0.00 0.00 6.13
140 141 4.400961 GGCGGCAGCTGGAAGAGT 62.401 66.667 17.12 0.00 44.37 3.24
141 142 2.817396 GCGGCAGCTGGAAGAGTC 60.817 66.667 17.12 0.00 41.01 3.36
142 143 2.507992 CGGCAGCTGGAAGAGTCG 60.508 66.667 17.12 0.00 34.07 4.18
143 144 2.659610 GGCAGCTGGAAGAGTCGT 59.340 61.111 17.12 0.00 34.07 4.34
144 145 1.446966 GGCAGCTGGAAGAGTCGTC 60.447 63.158 17.12 0.00 34.07 4.20
145 146 1.803519 GCAGCTGGAAGAGTCGTCG 60.804 63.158 17.12 0.00 34.07 5.12
146 147 1.153939 CAGCTGGAAGAGTCGTCGG 60.154 63.158 5.57 0.00 34.07 4.79
147 148 1.303398 AGCTGGAAGAGTCGTCGGA 60.303 57.895 0.00 0.00 34.07 4.55
148 149 0.894184 AGCTGGAAGAGTCGTCGGAA 60.894 55.000 0.00 0.00 34.07 4.30
149 150 0.038526 GCTGGAAGAGTCGTCGGAAA 60.039 55.000 0.00 0.00 34.07 3.13
150 151 1.604693 GCTGGAAGAGTCGTCGGAAAA 60.605 52.381 0.00 0.00 34.07 2.29
151 152 2.750948 CTGGAAGAGTCGTCGGAAAAA 58.249 47.619 0.00 0.00 34.07 1.94
189 190 4.760047 CGGAGGAGGCGGGTGTTG 62.760 72.222 0.00 0.00 0.00 3.33
190 191 4.410400 GGAGGAGGCGGGTGTTGG 62.410 72.222 0.00 0.00 0.00 3.77
211 212 3.605895 GGGGGTGAGACGAGAGAC 58.394 66.667 0.00 0.00 0.00 3.36
212 213 2.053277 GGGGGTGAGACGAGAGACC 61.053 68.421 0.00 0.00 0.00 3.85
213 214 1.304217 GGGGTGAGACGAGAGACCA 60.304 63.158 0.00 0.00 0.00 4.02
214 215 0.898789 GGGGTGAGACGAGAGACCAA 60.899 60.000 0.00 0.00 0.00 3.67
215 216 1.187087 GGGTGAGACGAGAGACCAAT 58.813 55.000 0.00 0.00 0.00 3.16
216 217 1.134965 GGGTGAGACGAGAGACCAATG 60.135 57.143 0.00 0.00 0.00 2.82
217 218 1.546476 GGTGAGACGAGAGACCAATGT 59.454 52.381 0.00 0.00 0.00 2.71
218 219 2.600731 GTGAGACGAGAGACCAATGTG 58.399 52.381 0.00 0.00 0.00 3.21
219 220 1.067565 TGAGACGAGAGACCAATGTGC 60.068 52.381 0.00 0.00 0.00 4.57
220 221 0.247736 AGACGAGAGACCAATGTGCC 59.752 55.000 0.00 0.00 0.00 5.01
221 222 0.037326 GACGAGAGACCAATGTGCCA 60.037 55.000 0.00 0.00 0.00 4.92
222 223 0.615331 ACGAGAGACCAATGTGCCAT 59.385 50.000 0.00 0.00 0.00 4.40
223 224 1.831106 ACGAGAGACCAATGTGCCATA 59.169 47.619 0.00 0.00 0.00 2.74
224 225 2.159043 ACGAGAGACCAATGTGCCATAG 60.159 50.000 0.00 0.00 0.00 2.23
225 226 2.101415 CGAGAGACCAATGTGCCATAGA 59.899 50.000 0.00 0.00 0.00 1.98
226 227 3.244009 CGAGAGACCAATGTGCCATAGAT 60.244 47.826 0.00 0.00 0.00 1.98
227 228 4.314121 GAGAGACCAATGTGCCATAGATC 58.686 47.826 0.00 0.00 0.00 2.75
228 229 3.713248 AGAGACCAATGTGCCATAGATCA 59.287 43.478 0.00 0.00 0.00 2.92
229 230 4.063689 GAGACCAATGTGCCATAGATCAG 58.936 47.826 0.00 0.00 0.00 2.90
230 231 3.457380 AGACCAATGTGCCATAGATCAGT 59.543 43.478 0.00 0.00 0.00 3.41
231 232 3.548770 ACCAATGTGCCATAGATCAGTG 58.451 45.455 0.00 0.00 0.00 3.66
232 233 2.882761 CCAATGTGCCATAGATCAGTGG 59.117 50.000 11.03 11.03 39.10 4.00
233 234 2.882761 CAATGTGCCATAGATCAGTGGG 59.117 50.000 15.63 3.95 36.00 4.61
234 235 0.181114 TGTGCCATAGATCAGTGGGC 59.819 55.000 15.63 12.80 44.82 5.36
235 236 0.536006 GTGCCATAGATCAGTGGGCC 60.536 60.000 15.63 0.00 43.96 5.80
236 237 1.073897 GCCATAGATCAGTGGGCCC 59.926 63.158 17.59 17.59 38.70 5.80
237 238 1.372683 CCATAGATCAGTGGGCCCG 59.627 63.158 19.37 2.31 0.00 6.13
238 239 1.372683 CATAGATCAGTGGGCCCGG 59.627 63.158 19.37 9.68 0.00 5.73
239 240 1.843376 ATAGATCAGTGGGCCCGGG 60.843 63.158 19.09 19.09 0.00 5.73
249 250 4.791069 GGCCCGGGGACAGGAGTA 62.791 72.222 25.28 0.00 0.00 2.59
250 251 3.155167 GCCCGGGGACAGGAGTAG 61.155 72.222 25.28 0.00 0.00 2.57
251 252 2.444140 CCCGGGGACAGGAGTAGG 60.444 72.222 14.71 0.00 0.00 3.18
252 253 3.155167 CCGGGGACAGGAGTAGGC 61.155 72.222 0.00 0.00 0.00 3.93
253 254 3.528370 CGGGGACAGGAGTAGGCG 61.528 72.222 0.00 0.00 0.00 5.52
254 255 2.043248 GGGGACAGGAGTAGGCGA 60.043 66.667 0.00 0.00 0.00 5.54
255 256 2.128507 GGGGACAGGAGTAGGCGAG 61.129 68.421 0.00 0.00 0.00 5.03
256 257 2.787567 GGGACAGGAGTAGGCGAGC 61.788 68.421 0.00 0.00 0.00 5.03
257 258 2.409651 GACAGGAGTAGGCGAGCG 59.590 66.667 0.00 0.00 0.00 5.03
258 259 3.759766 GACAGGAGTAGGCGAGCGC 62.760 68.421 6.27 6.27 41.06 5.92
259 260 4.914420 CAGGAGTAGGCGAGCGCG 62.914 72.222 5.14 5.14 43.06 6.86
300 301 3.564027 CCGACGCAAATCCGGCTC 61.564 66.667 0.00 0.00 36.62 4.70
301 302 2.813474 CGACGCAAATCCGGCTCA 60.813 61.111 0.00 0.00 33.03 4.26
302 303 2.387445 CGACGCAAATCCGGCTCAA 61.387 57.895 0.00 0.00 33.03 3.02
303 304 1.873165 GACGCAAATCCGGCTCAAA 59.127 52.632 0.00 0.00 32.31 2.69
304 305 0.239879 GACGCAAATCCGGCTCAAAA 59.760 50.000 0.00 0.00 32.31 2.44
305 306 0.671251 ACGCAAATCCGGCTCAAAAA 59.329 45.000 0.00 0.00 0.00 1.94
306 307 1.272212 ACGCAAATCCGGCTCAAAAAT 59.728 42.857 0.00 0.00 0.00 1.82
307 308 1.655099 CGCAAATCCGGCTCAAAAATG 59.345 47.619 0.00 0.00 0.00 2.32
308 309 2.670789 CGCAAATCCGGCTCAAAAATGA 60.671 45.455 0.00 0.00 0.00 2.57
309 310 2.925563 GCAAATCCGGCTCAAAAATGAG 59.074 45.455 0.00 1.50 38.86 2.90
318 319 3.155093 CTCAAAAATGAGCCGGGAATG 57.845 47.619 2.18 0.00 0.00 2.67
319 320 1.824230 TCAAAAATGAGCCGGGAATGG 59.176 47.619 2.18 0.00 0.00 3.16
320 321 1.134729 CAAAAATGAGCCGGGAATGGG 60.135 52.381 2.18 0.00 0.00 4.00
321 322 0.041090 AAAATGAGCCGGGAATGGGT 59.959 50.000 2.18 0.00 43.87 4.51
327 328 4.891727 CCGGGAATGGGTCGCTCG 62.892 72.222 0.00 0.00 37.05 5.03
331 332 4.508128 GAATGGGTCGCTCGCGGA 62.508 66.667 6.13 0.00 40.25 5.54
332 333 4.814294 AATGGGTCGCTCGCGGAC 62.814 66.667 6.13 5.77 40.25 4.79
349 350 2.622085 CGAAAAACGGACGCGTGT 59.378 55.556 20.70 6.40 38.46 4.49
350 351 1.435966 CGAAAAACGGACGCGTGTC 60.436 57.895 20.70 20.76 44.72 3.67
358 359 2.867472 GACGCGTGTCCATTTGGG 59.133 61.111 20.70 0.00 39.30 4.12
359 360 1.964373 GACGCGTGTCCATTTGGGT 60.964 57.895 20.70 0.00 39.30 4.51
360 361 1.908066 GACGCGTGTCCATTTGGGTC 61.908 60.000 20.70 0.00 39.30 4.46
361 362 2.867472 GCGTGTCCATTTGGGTCG 59.133 61.111 0.00 1.45 38.11 4.79
362 363 1.669760 GCGTGTCCATTTGGGTCGA 60.670 57.895 11.04 0.00 38.11 4.20
363 364 1.908066 GCGTGTCCATTTGGGTCGAC 61.908 60.000 7.13 7.13 38.11 4.20
364 365 1.623081 CGTGTCCATTTGGGTCGACG 61.623 60.000 9.92 0.00 38.11 5.12
365 366 1.669760 TGTCCATTTGGGTCGACGC 60.670 57.895 24.41 24.41 38.11 5.19
366 367 2.433491 TCCATTTGGGTCGACGCG 60.433 61.111 25.18 3.53 38.11 6.01
367 368 2.740826 CCATTTGGGTCGACGCGT 60.741 61.111 25.18 13.85 0.00 6.01
368 369 2.736682 CCATTTGGGTCGACGCGTC 61.737 63.158 28.96 28.96 0.00 5.19
381 382 4.084888 GCGTCGGGCCGTCTTTTG 62.085 66.667 27.32 8.62 34.80 2.44
382 383 2.663852 CGTCGGGCCGTCTTTTGT 60.664 61.111 27.32 0.00 0.00 2.83
383 384 2.943653 GTCGGGCCGTCTTTTGTG 59.056 61.111 27.32 0.00 0.00 3.33
384 385 1.890510 GTCGGGCCGTCTTTTGTGT 60.891 57.895 27.32 0.00 0.00 3.72
385 386 1.595929 TCGGGCCGTCTTTTGTGTC 60.596 57.895 27.32 0.00 0.00 3.67
386 387 2.613506 CGGGCCGTCTTTTGTGTCC 61.614 63.158 19.97 0.00 0.00 4.02
387 388 2.613506 GGGCCGTCTTTTGTGTCCG 61.614 63.158 0.00 0.00 0.00 4.79
388 389 2.251371 GCCGTCTTTTGTGTCCGC 59.749 61.111 0.00 0.00 0.00 5.54
389 390 2.549282 CCGTCTTTTGTGTCCGCG 59.451 61.111 0.00 0.00 0.00 6.46
390 391 2.127758 CGTCTTTTGTGTCCGCGC 60.128 61.111 0.00 0.00 0.00 6.86
391 392 2.251371 GTCTTTTGTGTCCGCGCC 59.749 61.111 0.00 0.00 0.00 6.53
392 393 3.342627 TCTTTTGTGTCCGCGCCG 61.343 61.111 0.00 0.00 0.00 6.46
393 394 3.342627 CTTTTGTGTCCGCGCCGA 61.343 61.111 0.00 0.00 0.00 5.54
394 395 3.573489 CTTTTGTGTCCGCGCCGAC 62.573 63.158 20.04 20.04 0.00 4.79
419 420 3.484547 GACGGCCGCGAACGAAAT 61.485 61.111 28.58 0.57 43.93 2.17
420 421 2.125991 ACGGCCGCGAACGAAATA 60.126 55.556 28.58 0.00 43.93 1.40
421 422 1.485032 GACGGCCGCGAACGAAATAT 61.485 55.000 28.58 0.00 43.93 1.28
422 423 1.083657 CGGCCGCGAACGAAATATG 60.084 57.895 14.67 0.00 43.93 1.78
423 424 1.758319 CGGCCGCGAACGAAATATGT 61.758 55.000 14.67 0.00 43.93 2.29
424 425 0.042448 GGCCGCGAACGAAATATGTC 60.042 55.000 8.23 0.00 43.93 3.06
425 426 0.381428 GCCGCGAACGAAATATGTCG 60.381 55.000 13.85 13.85 46.54 4.35
426 427 0.381428 CCGCGAACGAAATATGTCGC 60.381 55.000 15.32 10.70 45.00 5.19
427 428 0.381428 CGCGAACGAAATATGTCGCC 60.381 55.000 15.32 6.70 45.00 5.54
428 429 0.928229 GCGAACGAAATATGTCGCCT 59.072 50.000 15.32 2.66 45.00 5.52
429 430 2.121786 GCGAACGAAATATGTCGCCTA 58.878 47.619 15.32 0.00 45.00 3.93
430 431 2.153247 GCGAACGAAATATGTCGCCTAG 59.847 50.000 15.32 5.85 45.00 3.02
431 432 3.624900 CGAACGAAATATGTCGCCTAGA 58.375 45.455 15.32 0.00 45.00 2.43
432 433 3.664486 CGAACGAAATATGTCGCCTAGAG 59.336 47.826 15.32 0.00 45.00 2.43
433 434 4.608951 GAACGAAATATGTCGCCTAGAGT 58.391 43.478 15.32 0.00 45.00 3.24
434 435 4.650754 ACGAAATATGTCGCCTAGAGTT 57.349 40.909 15.32 0.00 45.00 3.01
435 436 4.360563 ACGAAATATGTCGCCTAGAGTTG 58.639 43.478 15.32 0.00 45.00 3.16
436 437 3.182572 CGAAATATGTCGCCTAGAGTTGC 59.817 47.826 1.56 0.00 33.66 4.17
437 438 4.372656 GAAATATGTCGCCTAGAGTTGCT 58.627 43.478 0.00 0.00 0.00 3.91
438 439 3.651803 ATATGTCGCCTAGAGTTGCTC 57.348 47.619 0.00 0.00 0.00 4.26
439 440 1.479709 ATGTCGCCTAGAGTTGCTCT 58.520 50.000 4.02 4.02 43.83 4.09
440 441 1.257743 TGTCGCCTAGAGTTGCTCTT 58.742 50.000 3.87 0.00 41.50 2.85
441 442 1.067565 TGTCGCCTAGAGTTGCTCTTG 60.068 52.381 3.87 2.61 41.50 3.02
442 443 0.108615 TCGCCTAGAGTTGCTCTTGC 60.109 55.000 3.87 7.03 41.50 4.01
475 476 3.923017 CGAAGCAACTCCTGGAATTTT 57.077 42.857 0.00 0.00 0.00 1.82
476 477 3.568538 CGAAGCAACTCCTGGAATTTTG 58.431 45.455 0.00 3.10 0.00 2.44
477 478 3.004734 CGAAGCAACTCCTGGAATTTTGT 59.995 43.478 0.00 0.00 0.00 2.83
478 479 4.301628 GAAGCAACTCCTGGAATTTTGTG 58.698 43.478 0.00 0.00 0.00 3.33
479 480 2.629617 AGCAACTCCTGGAATTTTGTGG 59.370 45.455 0.00 0.00 0.00 4.17
480 481 2.627699 GCAACTCCTGGAATTTTGTGGA 59.372 45.455 0.00 0.00 0.00 4.02
481 482 3.305608 GCAACTCCTGGAATTTTGTGGAG 60.306 47.826 0.00 12.90 46.93 3.86
482 483 4.144297 CAACTCCTGGAATTTTGTGGAGA 58.856 43.478 18.26 0.00 45.07 3.71
483 484 4.664688 ACTCCTGGAATTTTGTGGAGAT 57.335 40.909 18.26 6.14 45.07 2.75
484 485 4.338879 ACTCCTGGAATTTTGTGGAGATG 58.661 43.478 18.26 1.63 45.07 2.90
485 486 3.698040 CTCCTGGAATTTTGTGGAGATGG 59.302 47.826 0.00 0.00 45.07 3.51
486 487 3.075882 TCCTGGAATTTTGTGGAGATGGT 59.924 43.478 0.00 0.00 0.00 3.55
487 488 3.194116 CCTGGAATTTTGTGGAGATGGTG 59.806 47.826 0.00 0.00 0.00 4.17
488 489 4.081406 CTGGAATTTTGTGGAGATGGTGA 58.919 43.478 0.00 0.00 0.00 4.02
489 490 4.478203 TGGAATTTTGTGGAGATGGTGAA 58.522 39.130 0.00 0.00 0.00 3.18
490 491 4.898265 TGGAATTTTGTGGAGATGGTGAAA 59.102 37.500 0.00 0.00 0.00 2.69
491 492 5.543405 TGGAATTTTGTGGAGATGGTGAAAT 59.457 36.000 0.00 0.00 0.00 2.17
492 493 6.043012 TGGAATTTTGTGGAGATGGTGAAATT 59.957 34.615 0.00 0.00 0.00 1.82
493 494 6.591448 GGAATTTTGTGGAGATGGTGAAATTC 59.409 38.462 9.11 9.11 39.47 2.17
494 495 5.467035 TTTTGTGGAGATGGTGAAATTCC 57.533 39.130 0.00 0.00 0.00 3.01
495 496 2.710377 TGTGGAGATGGTGAAATTCCG 58.290 47.619 0.00 0.00 0.00 4.30
496 497 2.304470 TGTGGAGATGGTGAAATTCCGA 59.696 45.455 0.00 0.00 0.00 4.55
497 498 3.244735 TGTGGAGATGGTGAAATTCCGAA 60.245 43.478 0.00 0.00 0.00 4.30
498 499 3.127030 GTGGAGATGGTGAAATTCCGAAC 59.873 47.826 0.00 0.00 0.00 3.95
499 500 3.244735 TGGAGATGGTGAAATTCCGAACA 60.245 43.478 0.00 0.00 0.00 3.18
500 501 3.375299 GGAGATGGTGAAATTCCGAACAG 59.625 47.826 0.00 0.00 0.00 3.16
501 502 3.347216 AGATGGTGAAATTCCGAACAGG 58.653 45.455 0.00 0.00 42.97 4.00
502 503 1.243902 TGGTGAAATTCCGAACAGGC 58.756 50.000 0.00 0.00 40.77 4.85
503 504 1.202879 TGGTGAAATTCCGAACAGGCT 60.203 47.619 0.00 0.00 40.77 4.58
507 508 3.619038 GTGAAATTCCGAACAGGCTCTAG 59.381 47.826 0.00 0.00 40.77 2.43
523 524 3.311596 GCTCTAGGTGTCAACGTTTTTGT 59.688 43.478 0.00 0.00 0.00 2.83
525 526 4.761975 TCTAGGTGTCAACGTTTTTGTCT 58.238 39.130 0.00 0.00 0.00 3.41
533 534 3.063452 TCAACGTTTTTGTCTCTGCTGTC 59.937 43.478 0.00 0.00 0.00 3.51
540 541 0.668401 TGTCTCTGCTGTCACGCATG 60.668 55.000 0.00 0.00 39.52 4.06
541 542 0.668706 GTCTCTGCTGTCACGCATGT 60.669 55.000 0.00 0.00 39.52 3.21
542 543 0.887933 TCTCTGCTGTCACGCATGTA 59.112 50.000 0.00 0.00 39.52 2.29
543 544 0.994995 CTCTGCTGTCACGCATGTAC 59.005 55.000 0.00 0.00 39.52 2.90
646 650 2.654749 TTATGTGCTCGTCACTCCAG 57.345 50.000 10.76 0.00 45.81 3.86
667 671 0.037605 ACCATCCGTCGTCTCCAAAC 60.038 55.000 0.00 0.00 0.00 2.93
674 678 1.000607 CGTCGTCTCCAAACCTTCTCA 60.001 52.381 0.00 0.00 0.00 3.27
769 773 0.741221 ATCTCCGGCGAGCTTTTGAC 60.741 55.000 9.30 0.00 35.94 3.18
872 878 3.391382 GGACAGGTCGGACTGGGG 61.391 72.222 8.23 0.00 42.75 4.96
888 894 4.699522 GGCTGGGGTGACGGTGAC 62.700 72.222 0.00 0.00 0.00 3.67
907 913 2.345760 GGACATTGCTGCCAGTGGG 61.346 63.158 12.15 0.00 33.40 4.61
908 914 1.303561 GACATTGCTGCCAGTGGGA 60.304 57.895 12.15 7.39 33.40 4.37
1039 1045 2.122413 TGCAGACCCTGTCCCTGT 60.122 61.111 0.00 0.00 33.43 4.00
1252 1264 5.477984 TCCTAGTTTCTTTAGTTCTACCGCA 59.522 40.000 0.00 0.00 0.00 5.69
1314 1332 8.057812 CACTTCAGATTTTGAATTGTTCACTG 57.942 34.615 0.00 0.00 44.48 3.66
1388 1406 8.131731 GCGAAAATTAAGAAGCCTTGATCTATT 58.868 33.333 0.00 0.00 33.94 1.73
1397 1415 9.479549 AAGAAGCCTTGATCTATTTGGAAATAA 57.520 29.630 0.00 0.00 31.03 1.40
1463 1481 1.675641 GGCGCCTGTCCATCAGTTT 60.676 57.895 22.15 0.00 42.19 2.66
1464 1482 1.244019 GGCGCCTGTCCATCAGTTTT 61.244 55.000 22.15 0.00 42.19 2.43
1468 1486 3.625764 GCGCCTGTCCATCAGTTTTAATA 59.374 43.478 0.00 0.00 42.19 0.98
1482 1500 6.045106 TCAGTTTTAATAACTTGACCTCCCCT 59.955 38.462 0.00 0.00 0.00 4.79
1486 1504 2.112279 TAACTTGACCTCCCCTGTGT 57.888 50.000 0.00 0.00 0.00 3.72
1513 1533 3.050619 CAACGTGAGCTTCGTAGTTCTT 58.949 45.455 15.93 0.19 40.69 2.52
1560 1610 7.083858 TCTTTCTTCTTTTTGTGTGTGTCAAG 58.916 34.615 0.00 0.00 0.00 3.02
1652 1702 4.804108 CTGGATACTCTTGATCTAAGCGG 58.196 47.826 0.00 0.00 36.31 5.52
1692 1742 5.313712 ACCTTACCAACAGGTGACTAATTG 58.686 41.667 0.00 0.00 43.52 2.32
1699 1749 5.685511 CCAACAGGTGACTAATTGTTTTTCG 59.314 40.000 0.00 0.00 40.21 3.46
1730 1780 2.026641 TGTATACAGTACCTCGGTGGC 58.973 52.381 0.08 0.00 40.22 5.01
1733 1783 0.251922 TACAGTACCTCGGTGGCCTT 60.252 55.000 3.32 0.00 40.22 4.35
1737 1787 1.534476 TACCTCGGTGGCCTTGTGA 60.534 57.895 3.32 0.00 40.22 3.58
1784 1834 8.736097 TTTTGGGCTACATATAGATCCTTCTA 57.264 34.615 0.00 0.00 38.79 2.10
1835 1900 7.240167 AGTTAGAACTCCACTTACTACTCCTT 58.760 38.462 0.00 0.00 32.86 3.36
1836 1901 7.729431 AGTTAGAACTCCACTTACTACTCCTTT 59.271 37.037 0.00 0.00 32.86 3.11
1921 1986 8.468399 TGGATATTTCAACGTGTACTACATACA 58.532 33.333 0.00 0.00 41.71 2.29
1952 2017 9.301153 GAAATGAGTGAACAAACACACTAAAAT 57.699 29.630 0.00 0.00 45.54 1.82
2073 2147 6.699575 AAAGCATGTTCACTACTTCACTTT 57.300 33.333 0.00 0.00 0.00 2.66
2085 2159 4.749245 ACTTCACTTTCAGGTATTTGCG 57.251 40.909 0.00 0.00 0.00 4.85
2091 2165 3.119849 ACTTTCAGGTATTTGCGACATGC 60.120 43.478 0.00 0.00 46.70 4.06
2177 2251 7.360113 AGGGAATCTTACTTCTCTCAGAATC 57.640 40.000 0.00 0.00 29.77 2.52
2180 2254 7.209475 GGAATCTTACTTCTCTCAGAATCCTG 58.791 42.308 0.00 0.00 41.74 3.86
2250 2327 2.354003 GCCCATTTGACTTCATTGGTGG 60.354 50.000 7.56 0.00 31.36 4.61
2498 2581 8.562052 CAACATGCATTAGAAGCTGTTGATATA 58.438 33.333 16.72 0.00 44.44 0.86
2822 2906 7.556844 ACAATTTCTCCGATAACATAGTGTCT 58.443 34.615 0.00 0.00 0.00 3.41
3182 3266 0.179004 TTTCCGGTCCAGTGCAATGT 60.179 50.000 13.82 0.00 0.00 2.71
3423 3507 7.431668 GTCACTTAAGGTATTTGCGTCTACTAG 59.568 40.741 7.53 0.00 0.00 2.57
3424 3508 7.337689 TCACTTAAGGTATTTGCGTCTACTAGA 59.662 37.037 7.53 0.00 0.00 2.43
3425 3509 8.136165 CACTTAAGGTATTTGCGTCTACTAGAT 58.864 37.037 7.53 0.00 0.00 1.98
3426 3510 8.351461 ACTTAAGGTATTTGCGTCTACTAGATC 58.649 37.037 7.53 0.00 0.00 2.75
3427 3511 6.963083 AAGGTATTTGCGTCTACTAGATCT 57.037 37.500 0.00 0.00 0.00 2.75
3428 3512 6.320494 AGGTATTTGCGTCTACTAGATCTG 57.680 41.667 5.18 0.00 0.00 2.90
3429 3513 5.828859 AGGTATTTGCGTCTACTAGATCTGT 59.171 40.000 5.18 4.31 0.00 3.41
3430 3514 6.016943 AGGTATTTGCGTCTACTAGATCTGTC 60.017 42.308 5.18 0.00 0.00 3.51
3431 3515 6.016943 GGTATTTGCGTCTACTAGATCTGTCT 60.017 42.308 5.18 0.00 38.52 3.41
3432 3516 5.487153 TTTGCGTCTACTAGATCTGTCTC 57.513 43.478 5.18 0.00 35.87 3.36
3433 3517 4.138487 TGCGTCTACTAGATCTGTCTCA 57.862 45.455 5.18 0.00 35.87 3.27
3434 3518 4.709250 TGCGTCTACTAGATCTGTCTCAT 58.291 43.478 5.18 0.00 35.87 2.90
3435 3519 5.855045 TGCGTCTACTAGATCTGTCTCATA 58.145 41.667 5.18 0.00 35.87 2.15
3436 3520 6.289064 TGCGTCTACTAGATCTGTCTCATAA 58.711 40.000 5.18 0.00 35.87 1.90
3437 3521 6.937465 TGCGTCTACTAGATCTGTCTCATAAT 59.063 38.462 5.18 0.00 35.87 1.28
3438 3522 8.095169 TGCGTCTACTAGATCTGTCTCATAATA 58.905 37.037 5.18 0.00 35.87 0.98
3439 3523 8.937884 GCGTCTACTAGATCTGTCTCATAATAA 58.062 37.037 5.18 0.00 35.87 1.40
3444 3528 7.601856 ACTAGATCTGTCTCATAATAAGCTGC 58.398 38.462 5.18 0.00 35.87 5.25
3445 3529 6.669125 AGATCTGTCTCATAATAAGCTGCT 57.331 37.500 0.00 0.00 0.00 4.24
3446 3530 6.457355 AGATCTGTCTCATAATAAGCTGCTG 58.543 40.000 1.35 0.00 0.00 4.41
3447 3531 4.375272 TCTGTCTCATAATAAGCTGCTGC 58.625 43.478 1.35 7.62 40.05 5.25
3448 3532 3.470709 TGTCTCATAATAAGCTGCTGCC 58.529 45.455 12.44 0.00 40.80 4.85
3449 3533 3.135348 TGTCTCATAATAAGCTGCTGCCT 59.865 43.478 12.44 1.33 40.80 4.75
3450 3534 4.133078 GTCTCATAATAAGCTGCTGCCTT 58.867 43.478 12.44 8.47 40.80 4.35
3451 3535 4.024218 GTCTCATAATAAGCTGCTGCCTTG 60.024 45.833 12.44 0.00 40.80 3.61
3452 3536 3.881688 CTCATAATAAGCTGCTGCCTTGT 59.118 43.478 12.44 2.05 40.80 3.16
3453 3537 3.628942 TCATAATAAGCTGCTGCCTTGTG 59.371 43.478 12.44 11.55 40.80 3.33
3454 3538 2.205022 AATAAGCTGCTGCCTTGTGA 57.795 45.000 12.44 0.00 40.80 3.58
3455 3539 1.457346 ATAAGCTGCTGCCTTGTGAC 58.543 50.000 12.44 0.00 40.80 3.67
3456 3540 0.606401 TAAGCTGCTGCCTTGTGACC 60.606 55.000 12.44 0.00 40.80 4.02
3457 3541 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
3458 3542 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
3459 3543 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
3460 3544 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
3461 3545 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
3462 3546 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
3472 3556 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
3473 3557 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
3474 3558 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
3475 3559 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
3476 3560 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
3477 3561 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
3478 3562 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
3479 3563 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
3480 3564 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
3481 3565 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
3482 3566 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
3483 3567 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
3484 3568 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
3485 3569 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
3486 3570 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
3497 3581 3.025924 TGGAAACAGCCTCTTGCAG 57.974 52.632 0.00 0.00 44.83 4.41
3498 3582 0.473755 TGGAAACAGCCTCTTGCAGA 59.526 50.000 0.00 0.00 44.83 4.26
3499 3583 1.133823 TGGAAACAGCCTCTTGCAGAA 60.134 47.619 0.00 0.00 44.83 3.02
3500 3584 1.956477 GGAAACAGCCTCTTGCAGAAA 59.044 47.619 0.00 0.00 44.83 2.52
3501 3585 2.560105 GGAAACAGCCTCTTGCAGAAAT 59.440 45.455 0.00 0.00 44.83 2.17
3502 3586 3.572584 GAAACAGCCTCTTGCAGAAATG 58.427 45.455 0.00 0.00 44.83 2.32
3503 3587 2.283145 ACAGCCTCTTGCAGAAATGT 57.717 45.000 0.00 0.00 44.83 2.71
3504 3588 3.423539 ACAGCCTCTTGCAGAAATGTA 57.576 42.857 0.00 0.00 44.83 2.29
3505 3589 3.341823 ACAGCCTCTTGCAGAAATGTAG 58.658 45.455 0.00 0.00 44.83 2.74
3506 3590 2.681848 CAGCCTCTTGCAGAAATGTAGG 59.318 50.000 0.00 0.00 44.83 3.18
3507 3591 2.019984 GCCTCTTGCAGAAATGTAGGG 58.980 52.381 0.00 0.00 40.77 3.53
3508 3592 2.356125 GCCTCTTGCAGAAATGTAGGGA 60.356 50.000 0.00 0.00 40.77 4.20
3509 3593 3.873801 GCCTCTTGCAGAAATGTAGGGAA 60.874 47.826 0.00 0.00 40.77 3.97
3510 3594 4.335416 CCTCTTGCAGAAATGTAGGGAAA 58.665 43.478 0.00 0.00 0.00 3.13
3511 3595 4.397417 CCTCTTGCAGAAATGTAGGGAAAG 59.603 45.833 0.00 0.00 0.00 2.62
3512 3596 4.335416 TCTTGCAGAAATGTAGGGAAAGG 58.665 43.478 0.00 0.00 0.00 3.11
3513 3597 2.446435 TGCAGAAATGTAGGGAAAGGC 58.554 47.619 0.00 0.00 0.00 4.35
3514 3598 2.041620 TGCAGAAATGTAGGGAAAGGCT 59.958 45.455 0.00 0.00 0.00 4.58
3515 3599 2.424956 GCAGAAATGTAGGGAAAGGCTG 59.575 50.000 0.00 0.00 0.00 4.85
3516 3600 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
3517 3601 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
3518 3602 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3519 3603 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3520 3604 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3521 3605 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
3522 3606 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
3523 3607 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
3524 3608 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
3525 3609 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
3526 3610 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
3527 3611 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
3528 3612 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
3529 3613 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
3530 3614 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
3531 3615 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
3532 3616 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
3533 3617 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
3534 3618 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
3535 3619 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
3536 3620 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
3537 3621 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
3542 3626 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3543 3627 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3544 3628 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3545 3629 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3546 3630 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3547 3631 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3548 3632 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3549 3633 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3550 3634 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
3551 3635 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
3552 3636 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
3553 3637 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
3554 3638 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
3555 3639 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
3556 3640 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
3557 3641 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
3558 3642 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
3559 3643 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
3560 3644 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
3561 3645 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
3582 3666 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
3583 3667 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
3584 3668 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
3585 3669 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
3586 3670 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
3587 3671 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
3588 3672 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
3589 3673 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
3590 3674 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
3595 3679 2.203684 CACTGGGGCTGCCCTTTT 60.204 61.111 34.99 17.53 44.66 2.27
3596 3680 1.838396 CACTGGGGCTGCCCTTTTT 60.838 57.895 34.99 15.74 44.66 1.94
3659 3743 1.780503 GCCTGAGCAATATGGGGTTT 58.219 50.000 0.00 0.00 39.53 3.27
3754 3838 4.763793 TGATATTGGGAGCGTAGTAGGTAC 59.236 45.833 0.00 0.00 0.00 3.34
3974 4058 5.715439 TTCATGGACCAATACCAGATTCT 57.285 39.130 0.00 0.00 40.89 2.40
4505 4589 3.276091 CCCGTGCGTTGCAACAGA 61.276 61.111 28.01 11.66 41.47 3.41
4593 4677 2.518349 CGCCCCACTGTGTTGGTT 60.518 61.111 7.08 0.00 34.44 3.67
4594 4678 2.551912 CGCCCCACTGTGTTGGTTC 61.552 63.158 7.08 0.00 34.44 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.868200 CTTCCCCCACCACACAGCC 62.868 68.421 0.00 0.00 0.00 4.85
15 16 2.282462 CTTCCCCCACCACACAGC 60.282 66.667 0.00 0.00 0.00 4.40
16 17 2.282462 GCTTCCCCCACCACACAG 60.282 66.667 0.00 0.00 0.00 3.66
17 18 3.099841 TGCTTCCCCCACCACACA 61.100 61.111 0.00 0.00 0.00 3.72
18 19 2.282462 CTGCTTCCCCCACCACAC 60.282 66.667 0.00 0.00 0.00 3.82
19 20 4.284550 GCTGCTTCCCCCACCACA 62.285 66.667 0.00 0.00 0.00 4.17
26 27 3.842925 TTCACACCGCTGCTTCCCC 62.843 63.158 0.00 0.00 0.00 4.81
27 28 2.281484 TTCACACCGCTGCTTCCC 60.281 61.111 0.00 0.00 0.00 3.97
28 29 2.970974 GCTTCACACCGCTGCTTCC 61.971 63.158 0.00 0.00 0.00 3.46
29 30 2.180131 CTGCTTCACACCGCTGCTTC 62.180 60.000 0.00 0.00 0.00 3.86
30 31 2.203195 TGCTTCACACCGCTGCTT 60.203 55.556 0.00 0.00 0.00 3.91
31 32 2.667536 CTGCTTCACACCGCTGCT 60.668 61.111 0.00 0.00 0.00 4.24
32 33 2.063541 AAACTGCTTCACACCGCTGC 62.064 55.000 0.00 0.00 0.00 5.25
33 34 0.317269 CAAACTGCTTCACACCGCTG 60.317 55.000 0.00 0.00 0.00 5.18
34 35 2.024918 CAAACTGCTTCACACCGCT 58.975 52.632 0.00 0.00 0.00 5.52
35 36 1.658409 GCAAACTGCTTCACACCGC 60.658 57.895 0.00 0.00 40.96 5.68
36 37 4.614673 GCAAACTGCTTCACACCG 57.385 55.556 0.00 0.00 40.96 4.94
100 101 3.129502 CACATCTGCCCAGCACCG 61.130 66.667 0.00 0.00 33.79 4.94
101 102 2.753043 CCACATCTGCCCAGCACC 60.753 66.667 0.00 0.00 33.79 5.01
102 103 1.748122 CTCCACATCTGCCCAGCAC 60.748 63.158 0.00 0.00 33.79 4.40
103 104 2.672908 CTCCACATCTGCCCAGCA 59.327 61.111 0.00 0.00 36.92 4.41
104 105 2.124403 CCTCCACATCTGCCCAGC 60.124 66.667 0.00 0.00 0.00 4.85
105 106 2.124403 GCCTCCACATCTGCCCAG 60.124 66.667 0.00 0.00 0.00 4.45
106 107 4.100084 CGCCTCCACATCTGCCCA 62.100 66.667 0.00 0.00 0.00 5.36
107 108 4.864334 CCGCCTCCACATCTGCCC 62.864 72.222 0.00 0.00 0.00 5.36
123 124 4.400961 ACTCTTCCAGCTGCCGCC 62.401 66.667 8.66 0.00 36.60 6.13
124 125 2.817396 GACTCTTCCAGCTGCCGC 60.817 66.667 8.66 0.00 0.00 6.53
125 126 2.507992 CGACTCTTCCAGCTGCCG 60.508 66.667 8.66 0.00 0.00 5.69
126 127 1.446966 GACGACTCTTCCAGCTGCC 60.447 63.158 8.66 0.00 0.00 4.85
127 128 1.803519 CGACGACTCTTCCAGCTGC 60.804 63.158 8.66 0.00 0.00 5.25
128 129 1.153939 CCGACGACTCTTCCAGCTG 60.154 63.158 6.78 6.78 0.00 4.24
129 130 0.894184 TTCCGACGACTCTTCCAGCT 60.894 55.000 0.00 0.00 0.00 4.24
130 131 0.038526 TTTCCGACGACTCTTCCAGC 60.039 55.000 0.00 0.00 0.00 4.85
131 132 2.433868 TTTTCCGACGACTCTTCCAG 57.566 50.000 0.00 0.00 0.00 3.86
132 133 2.894763 TTTTTCCGACGACTCTTCCA 57.105 45.000 0.00 0.00 0.00 3.53
172 173 4.760047 CAACACCCGCCTCCTCCG 62.760 72.222 0.00 0.00 0.00 4.63
173 174 4.410400 CCAACACCCGCCTCCTCC 62.410 72.222 0.00 0.00 0.00 4.30
194 195 2.053277 GGTCTCTCGTCTCACCCCC 61.053 68.421 0.00 0.00 0.00 5.40
195 196 0.898789 TTGGTCTCTCGTCTCACCCC 60.899 60.000 0.00 0.00 0.00 4.95
196 197 1.134965 CATTGGTCTCTCGTCTCACCC 60.135 57.143 0.00 0.00 0.00 4.61
197 198 1.546476 ACATTGGTCTCTCGTCTCACC 59.454 52.381 0.00 0.00 0.00 4.02
198 199 2.600731 CACATTGGTCTCTCGTCTCAC 58.399 52.381 0.00 0.00 0.00 3.51
199 200 1.067565 GCACATTGGTCTCTCGTCTCA 60.068 52.381 0.00 0.00 0.00 3.27
200 201 1.634702 GCACATTGGTCTCTCGTCTC 58.365 55.000 0.00 0.00 0.00 3.36
201 202 0.247736 GGCACATTGGTCTCTCGTCT 59.752 55.000 0.00 0.00 0.00 4.18
202 203 0.037326 TGGCACATTGGTCTCTCGTC 60.037 55.000 0.00 0.00 0.00 4.20
203 204 2.057830 TGGCACATTGGTCTCTCGT 58.942 52.632 0.00 0.00 0.00 4.18
216 217 0.536006 GGCCCACTGATCTATGGCAC 60.536 60.000 14.89 7.91 43.96 5.01
217 218 1.708993 GGGCCCACTGATCTATGGCA 61.709 60.000 19.95 0.00 43.96 4.92
218 219 1.073897 GGGCCCACTGATCTATGGC 59.926 63.158 19.95 8.46 41.42 4.40
219 220 1.372683 CGGGCCCACTGATCTATGG 59.627 63.158 24.92 8.44 35.59 2.74
220 221 1.372683 CCGGGCCCACTGATCTATG 59.627 63.158 24.92 0.00 0.00 2.23
221 222 1.843376 CCCGGGCCCACTGATCTAT 60.843 63.158 24.92 0.00 0.00 1.98
222 223 2.445845 CCCGGGCCCACTGATCTA 60.446 66.667 24.92 0.00 0.00 1.98
232 233 4.791069 TACTCCTGTCCCCGGGCC 62.791 72.222 17.73 8.41 37.01 5.80
233 234 3.155167 CTACTCCTGTCCCCGGGC 61.155 72.222 17.73 2.17 37.01 6.13
234 235 2.444140 CCTACTCCTGTCCCCGGG 60.444 72.222 15.80 15.80 38.61 5.73
235 236 3.155167 GCCTACTCCTGTCCCCGG 61.155 72.222 0.00 0.00 0.00 5.73
236 237 3.528370 CGCCTACTCCTGTCCCCG 61.528 72.222 0.00 0.00 0.00 5.73
237 238 2.043248 TCGCCTACTCCTGTCCCC 60.043 66.667 0.00 0.00 0.00 4.81
238 239 2.787567 GCTCGCCTACTCCTGTCCC 61.788 68.421 0.00 0.00 0.00 4.46
239 240 2.809010 GCTCGCCTACTCCTGTCC 59.191 66.667 0.00 0.00 0.00 4.02
240 241 2.409651 CGCTCGCCTACTCCTGTC 59.590 66.667 0.00 0.00 0.00 3.51
241 242 3.827898 GCGCTCGCCTACTCCTGT 61.828 66.667 0.00 0.00 34.56 4.00
242 243 4.914420 CGCGCTCGCCTACTCCTG 62.914 72.222 5.56 0.00 37.98 3.86
283 284 3.564027 GAGCCGGATTTGCGTCGG 61.564 66.667 5.05 0.00 45.84 4.79
284 285 1.906994 TTTGAGCCGGATTTGCGTCG 61.907 55.000 5.05 0.00 0.00 5.12
285 286 0.239879 TTTTGAGCCGGATTTGCGTC 59.760 50.000 5.05 0.00 0.00 5.19
286 287 0.671251 TTTTTGAGCCGGATTTGCGT 59.329 45.000 5.05 0.00 0.00 5.24
287 288 1.655099 CATTTTTGAGCCGGATTTGCG 59.345 47.619 5.05 0.00 0.00 4.85
288 289 2.925563 CTCATTTTTGAGCCGGATTTGC 59.074 45.455 5.05 0.00 0.00 3.68
298 299 2.159198 CCATTCCCGGCTCATTTTTGAG 60.159 50.000 0.00 0.00 38.86 3.02
299 300 1.824230 CCATTCCCGGCTCATTTTTGA 59.176 47.619 0.00 0.00 0.00 2.69
300 301 1.134729 CCCATTCCCGGCTCATTTTTG 60.135 52.381 0.00 0.00 0.00 2.44
301 302 1.194218 CCCATTCCCGGCTCATTTTT 58.806 50.000 0.00 0.00 0.00 1.94
302 303 0.041090 ACCCATTCCCGGCTCATTTT 59.959 50.000 0.00 0.00 0.00 1.82
303 304 0.395724 GACCCATTCCCGGCTCATTT 60.396 55.000 0.00 0.00 0.00 2.32
304 305 1.227383 GACCCATTCCCGGCTCATT 59.773 57.895 0.00 0.00 0.00 2.57
305 306 2.919043 GACCCATTCCCGGCTCAT 59.081 61.111 0.00 0.00 0.00 2.90
306 307 3.781307 CGACCCATTCCCGGCTCA 61.781 66.667 0.00 0.00 0.00 4.26
310 311 4.891727 CGAGCGACCCATTCCCGG 62.892 72.222 0.00 0.00 0.00 5.73
314 315 4.508128 TCCGCGAGCGACCCATTC 62.508 66.667 19.72 0.00 42.83 2.67
315 316 4.814294 GTCCGCGAGCGACCCATT 62.814 66.667 19.72 0.00 42.83 3.16
325 326 2.027314 TCCGTTTTTCGTCCGCGA 59.973 55.556 8.23 0.00 46.36 5.87
326 327 2.169327 GTCCGTTTTTCGTCCGCG 59.831 61.111 0.00 0.00 37.94 6.46
327 328 2.169327 CGTCCGTTTTTCGTCCGC 59.831 61.111 0.00 0.00 37.94 5.54
328 329 2.169327 GCGTCCGTTTTTCGTCCG 59.831 61.111 0.00 0.00 37.94 4.79
329 330 2.169327 CGCGTCCGTTTTTCGTCC 59.831 61.111 0.00 0.00 37.94 4.79
341 342 1.908066 GACCCAAATGGACACGCGTC 61.908 60.000 9.86 0.00 41.80 5.19
342 343 1.964373 GACCCAAATGGACACGCGT 60.964 57.895 5.58 5.58 37.39 6.01
343 344 2.867472 GACCCAAATGGACACGCG 59.133 61.111 3.53 3.53 37.39 6.01
344 345 1.669760 TCGACCCAAATGGACACGC 60.670 57.895 0.00 0.00 37.39 5.34
345 346 1.623081 CGTCGACCCAAATGGACACG 61.623 60.000 10.58 4.08 37.39 4.49
346 347 1.908066 GCGTCGACCCAAATGGACAC 61.908 60.000 10.58 0.00 37.39 3.67
347 348 1.669760 GCGTCGACCCAAATGGACA 60.670 57.895 10.58 0.00 37.39 4.02
348 349 2.736682 CGCGTCGACCCAAATGGAC 61.737 63.158 10.58 0.00 37.39 4.02
349 350 2.433491 CGCGTCGACCCAAATGGA 60.433 61.111 10.58 0.00 37.39 3.41
350 351 2.736682 GACGCGTCGACCCAAATGG 61.737 63.158 25.19 0.00 41.37 3.16
351 352 2.776072 GACGCGTCGACCCAAATG 59.224 61.111 25.19 0.00 0.00 2.32
364 365 4.084888 CAAAAGACGGCCCGACGC 62.085 66.667 11.71 0.00 37.37 5.19
365 366 2.663852 ACAAAAGACGGCCCGACG 60.664 61.111 11.71 0.00 40.31 5.12
366 367 1.838568 GACACAAAAGACGGCCCGAC 61.839 60.000 11.71 2.80 0.00 4.79
367 368 1.595929 GACACAAAAGACGGCCCGA 60.596 57.895 11.71 0.00 0.00 5.14
368 369 2.613506 GGACACAAAAGACGGCCCG 61.614 63.158 0.00 0.00 0.00 6.13
369 370 2.613506 CGGACACAAAAGACGGCCC 61.614 63.158 0.00 0.00 0.00 5.80
370 371 2.943653 CGGACACAAAAGACGGCC 59.056 61.111 0.00 0.00 0.00 6.13
371 372 2.251371 GCGGACACAAAAGACGGC 59.749 61.111 0.00 0.00 0.00 5.68
372 373 2.549282 CGCGGACACAAAAGACGG 59.451 61.111 0.00 0.00 0.00 4.79
373 374 2.127758 GCGCGGACACAAAAGACG 60.128 61.111 8.83 0.00 0.00 4.18
374 375 2.251371 GGCGCGGACACAAAAGAC 59.749 61.111 8.83 0.00 0.00 3.01
375 376 3.342627 CGGCGCGGACACAAAAGA 61.343 61.111 9.72 0.00 0.00 2.52
376 377 3.342627 TCGGCGCGGACACAAAAG 61.343 61.111 14.27 0.00 0.00 2.27
377 378 3.641986 GTCGGCGCGGACACAAAA 61.642 61.111 34.74 4.76 36.91 2.44
402 403 1.485032 ATATTTCGTTCGCGGCCGTC 61.485 55.000 28.70 18.03 41.70 4.79
403 404 1.519898 ATATTTCGTTCGCGGCCGT 60.520 52.632 28.70 5.57 41.70 5.68
404 405 1.083657 CATATTTCGTTCGCGGCCG 60.084 57.895 24.05 24.05 41.70 6.13
405 406 0.042448 GACATATTTCGTTCGCGGCC 60.042 55.000 6.13 0.00 41.70 6.13
406 407 0.381428 CGACATATTTCGTTCGCGGC 60.381 55.000 6.13 0.00 41.70 6.53
407 408 0.381428 GCGACATATTTCGTTCGCGG 60.381 55.000 6.13 0.00 41.26 6.46
408 409 0.381428 GGCGACATATTTCGTTCGCG 60.381 55.000 12.51 0.00 45.92 5.87
409 410 0.928229 AGGCGACATATTTCGTTCGC 59.072 50.000 12.51 6.28 44.51 4.70
410 411 3.624900 TCTAGGCGACATATTTCGTTCG 58.375 45.455 12.51 0.00 41.26 3.95
411 412 4.608951 ACTCTAGGCGACATATTTCGTTC 58.391 43.478 12.51 6.02 41.26 3.95
412 413 4.650754 ACTCTAGGCGACATATTTCGTT 57.349 40.909 12.51 4.77 41.26 3.85
413 414 4.360563 CAACTCTAGGCGACATATTTCGT 58.639 43.478 12.51 0.00 41.26 3.85
414 415 3.182572 GCAACTCTAGGCGACATATTTCG 59.817 47.826 6.91 6.91 42.15 3.46
415 416 4.372656 AGCAACTCTAGGCGACATATTTC 58.627 43.478 0.00 0.00 34.54 2.17
416 417 4.100189 AGAGCAACTCTAGGCGACATATTT 59.900 41.667 0.00 0.00 39.28 1.40
417 418 3.639094 AGAGCAACTCTAGGCGACATATT 59.361 43.478 0.00 0.00 39.28 1.28
418 419 3.226777 AGAGCAACTCTAGGCGACATAT 58.773 45.455 0.00 0.00 39.28 1.78
419 420 2.656002 AGAGCAACTCTAGGCGACATA 58.344 47.619 0.00 0.00 39.28 2.29
420 421 1.479709 AGAGCAACTCTAGGCGACAT 58.520 50.000 0.00 0.00 39.28 3.06
421 422 1.067565 CAAGAGCAACTCTAGGCGACA 60.068 52.381 0.00 0.00 40.28 4.35
422 423 1.634702 CAAGAGCAACTCTAGGCGAC 58.365 55.000 0.00 0.00 40.28 5.19
423 424 0.108615 GCAAGAGCAACTCTAGGCGA 60.109 55.000 0.00 0.00 40.28 5.54
424 425 2.378028 GCAAGAGCAACTCTAGGCG 58.622 57.895 0.00 0.00 40.28 5.52
435 436 2.154389 CGCAATTTTCAACTGCAAGAGC 59.846 45.455 0.00 0.00 42.57 4.09
436 437 3.631144 TCGCAATTTTCAACTGCAAGAG 58.369 40.909 0.00 0.00 37.43 2.85
437 438 3.706802 TCGCAATTTTCAACTGCAAGA 57.293 38.095 0.00 0.00 37.43 3.02
438 439 3.362304 GCTTCGCAATTTTCAACTGCAAG 60.362 43.478 0.00 0.00 42.29 4.01
439 440 2.539274 GCTTCGCAATTTTCAACTGCAA 59.461 40.909 0.00 0.00 35.78 4.08
440 441 2.126467 GCTTCGCAATTTTCAACTGCA 58.874 42.857 0.00 0.00 35.78 4.41
441 442 2.126467 TGCTTCGCAATTTTCAACTGC 58.874 42.857 0.00 0.00 34.76 4.40
452 453 0.179032 TTCCAGGAGTTGCTTCGCAA 60.179 50.000 0.00 0.00 46.80 4.85
453 454 0.036732 ATTCCAGGAGTTGCTTCGCA 59.963 50.000 0.00 0.00 36.47 5.10
454 455 1.168714 AATTCCAGGAGTTGCTTCGC 58.831 50.000 0.00 0.00 0.00 4.70
455 456 3.004734 ACAAAATTCCAGGAGTTGCTTCG 59.995 43.478 0.00 0.00 0.00 3.79
456 457 4.301628 CACAAAATTCCAGGAGTTGCTTC 58.698 43.478 0.00 0.00 0.00 3.86
457 458 3.070015 CCACAAAATTCCAGGAGTTGCTT 59.930 43.478 0.00 0.00 0.00 3.91
458 459 2.629617 CCACAAAATTCCAGGAGTTGCT 59.370 45.455 0.00 0.00 0.00 3.91
459 460 2.627699 TCCACAAAATTCCAGGAGTTGC 59.372 45.455 0.00 0.00 0.00 4.17
460 461 4.144297 TCTCCACAAAATTCCAGGAGTTG 58.856 43.478 0.00 3.32 44.79 3.16
461 462 4.453480 TCTCCACAAAATTCCAGGAGTT 57.547 40.909 12.90 0.00 44.79 3.01
462 463 4.338879 CATCTCCACAAAATTCCAGGAGT 58.661 43.478 12.90 0.00 44.79 3.85
463 464 3.698040 CCATCTCCACAAAATTCCAGGAG 59.302 47.826 0.00 0.00 45.64 3.69
464 465 3.075882 ACCATCTCCACAAAATTCCAGGA 59.924 43.478 0.00 0.00 0.00 3.86
465 466 3.194116 CACCATCTCCACAAAATTCCAGG 59.806 47.826 0.00 0.00 0.00 4.45
466 467 4.081406 TCACCATCTCCACAAAATTCCAG 58.919 43.478 0.00 0.00 0.00 3.86
467 468 4.111255 TCACCATCTCCACAAAATTCCA 57.889 40.909 0.00 0.00 0.00 3.53
468 469 5.467035 TTTCACCATCTCCACAAAATTCC 57.533 39.130 0.00 0.00 0.00 3.01
469 470 6.591448 GGAATTTCACCATCTCCACAAAATTC 59.409 38.462 0.00 0.00 39.30 2.17
470 471 6.466812 GGAATTTCACCATCTCCACAAAATT 58.533 36.000 0.00 0.00 0.00 1.82
471 472 5.336690 CGGAATTTCACCATCTCCACAAAAT 60.337 40.000 0.00 0.00 0.00 1.82
472 473 4.022416 CGGAATTTCACCATCTCCACAAAA 60.022 41.667 0.00 0.00 0.00 2.44
473 474 3.505680 CGGAATTTCACCATCTCCACAAA 59.494 43.478 0.00 0.00 0.00 2.83
474 475 3.081061 CGGAATTTCACCATCTCCACAA 58.919 45.455 0.00 0.00 0.00 3.33
475 476 2.304470 TCGGAATTTCACCATCTCCACA 59.696 45.455 0.00 0.00 0.00 4.17
476 477 2.985896 TCGGAATTTCACCATCTCCAC 58.014 47.619 0.00 0.00 0.00 4.02
477 478 3.244735 TGTTCGGAATTTCACCATCTCCA 60.245 43.478 0.00 0.00 0.00 3.86
478 479 3.343617 TGTTCGGAATTTCACCATCTCC 58.656 45.455 0.00 0.00 0.00 3.71
479 480 3.375299 CCTGTTCGGAATTTCACCATCTC 59.625 47.826 0.00 0.00 33.16 2.75
480 481 3.347216 CCTGTTCGGAATTTCACCATCT 58.653 45.455 0.00 0.00 33.16 2.90
481 482 2.159379 GCCTGTTCGGAATTTCACCATC 60.159 50.000 0.00 0.00 33.16 3.51
482 483 1.818674 GCCTGTTCGGAATTTCACCAT 59.181 47.619 0.00 0.00 33.16 3.55
483 484 1.202879 AGCCTGTTCGGAATTTCACCA 60.203 47.619 0.00 0.00 33.16 4.17
484 485 1.468914 GAGCCTGTTCGGAATTTCACC 59.531 52.381 0.00 0.00 33.16 4.02
485 486 2.427506 AGAGCCTGTTCGGAATTTCAC 58.572 47.619 0.00 0.00 33.16 3.18
486 487 2.859165 AGAGCCTGTTCGGAATTTCA 57.141 45.000 0.00 0.00 33.16 2.69
487 488 3.198872 CCTAGAGCCTGTTCGGAATTTC 58.801 50.000 0.00 0.00 33.16 2.17
488 489 2.572104 ACCTAGAGCCTGTTCGGAATTT 59.428 45.455 0.00 0.00 33.16 1.82
489 490 2.093447 CACCTAGAGCCTGTTCGGAATT 60.093 50.000 0.00 0.00 33.16 2.17
490 491 1.482593 CACCTAGAGCCTGTTCGGAAT 59.517 52.381 0.00 0.00 33.16 3.01
491 492 0.895530 CACCTAGAGCCTGTTCGGAA 59.104 55.000 0.00 0.00 33.16 4.30
492 493 0.251653 ACACCTAGAGCCTGTTCGGA 60.252 55.000 0.00 0.00 33.16 4.55
493 494 0.173708 GACACCTAGAGCCTGTTCGG 59.826 60.000 0.00 0.00 0.00 4.30
494 495 0.888619 TGACACCTAGAGCCTGTTCG 59.111 55.000 0.00 0.00 0.00 3.95
495 496 2.689646 GTTGACACCTAGAGCCTGTTC 58.310 52.381 0.00 0.00 0.00 3.18
496 497 1.000955 CGTTGACACCTAGAGCCTGTT 59.999 52.381 0.00 0.00 0.00 3.16
497 498 0.603569 CGTTGACACCTAGAGCCTGT 59.396 55.000 0.00 0.00 0.00 4.00
498 499 0.603569 ACGTTGACACCTAGAGCCTG 59.396 55.000 0.00 0.00 0.00 4.85
499 500 1.339097 AACGTTGACACCTAGAGCCT 58.661 50.000 0.00 0.00 0.00 4.58
500 501 2.165319 AAACGTTGACACCTAGAGCC 57.835 50.000 0.00 0.00 0.00 4.70
501 502 3.311596 ACAAAAACGTTGACACCTAGAGC 59.688 43.478 0.00 0.00 0.00 4.09
502 503 4.809426 AGACAAAAACGTTGACACCTAGAG 59.191 41.667 0.00 0.00 0.00 2.43
503 504 4.761975 AGACAAAAACGTTGACACCTAGA 58.238 39.130 0.00 0.00 0.00 2.43
507 508 3.680789 CAGAGACAAAAACGTTGACACC 58.319 45.455 0.00 0.00 0.00 4.16
533 534 5.949233 ATGCATATATACGTACATGCGTG 57.051 39.130 22.67 3.82 45.31 5.34
540 541 8.959734 TGACAGTTACATGCATATATACGTAC 57.040 34.615 0.00 0.00 0.00 3.67
542 543 9.489084 AATTGACAGTTACATGCATATATACGT 57.511 29.630 0.00 0.00 0.00 3.57
543 544 9.745323 CAATTGACAGTTACATGCATATATACG 57.255 33.333 0.00 0.00 0.00 3.06
567 568 3.709653 ACTCCAGTCAACACTTAGTCCAA 59.290 43.478 0.00 0.00 0.00 3.53
616 620 8.689251 GTGACGAGCACATAATATATACACAT 57.311 34.615 8.00 0.00 46.91 3.21
646 650 0.813184 TTGGAGACGACGGATGGTAC 59.187 55.000 0.00 0.00 0.00 3.34
676 680 4.860907 GCAACATGATTGATTGAGGTTCAC 59.139 41.667 0.00 0.00 0.00 3.18
885 891 1.672030 CTGGCAGCAATGTCCGTCA 60.672 57.895 0.00 0.00 0.00 4.35
886 892 1.672356 ACTGGCAGCAATGTCCGTC 60.672 57.895 15.89 0.00 0.00 4.79
887 893 1.968017 CACTGGCAGCAATGTCCGT 60.968 57.895 15.89 0.00 0.00 4.69
888 894 2.693762 CCACTGGCAGCAATGTCCG 61.694 63.158 15.89 0.00 0.00 4.79
889 895 2.345760 CCCACTGGCAGCAATGTCC 61.346 63.158 15.89 0.00 0.00 4.02
890 896 1.303561 TCCCACTGGCAGCAATGTC 60.304 57.895 15.89 0.00 0.00 3.06
907 913 4.416738 GCTGCAGGTCACCCCCTC 62.417 72.222 17.12 0.00 30.33 4.30
948 954 1.841302 TTGCACCAAGATCGAGGCCT 61.841 55.000 3.86 3.86 0.00 5.19
1114 1120 6.859112 TGAGAAAAGCTAGAGACTGGTTAT 57.141 37.500 0.00 0.00 0.00 1.89
1311 1329 5.796424 AAGGAGCAACAATTCAATTCAGT 57.204 34.783 0.00 0.00 0.00 3.41
1314 1332 5.236911 TGCAAAAGGAGCAACAATTCAATTC 59.763 36.000 0.00 0.00 39.39 2.17
1388 1406 7.934665 TGCTGTAGTCACTTAAGTTATTTCCAA 59.065 33.333 5.07 0.00 0.00 3.53
1397 1415 3.838317 TGGGATGCTGTAGTCACTTAAGT 59.162 43.478 1.12 1.12 0.00 2.24
1463 1481 4.600111 ACACAGGGGAGGTCAAGTTATTAA 59.400 41.667 0.00 0.00 0.00 1.40
1464 1482 4.172807 ACACAGGGGAGGTCAAGTTATTA 58.827 43.478 0.00 0.00 0.00 0.98
1468 1486 0.765510 GACACAGGGGAGGTCAAGTT 59.234 55.000 0.00 0.00 0.00 2.66
1482 1500 0.666274 GCTCACGTTGGATCGACACA 60.666 55.000 0.00 0.00 34.70 3.72
1486 1504 0.456142 CGAAGCTCACGTTGGATCGA 60.456 55.000 5.32 0.00 34.70 3.59
1513 1533 7.546250 AGAAGTCTTCAGGAATAAAGAGTGA 57.454 36.000 14.97 0.00 0.00 3.41
1543 1564 4.095410 TGCTCTTGACACACACAAAAAG 57.905 40.909 0.00 0.00 0.00 2.27
1560 1610 0.251354 TGCTGGTCTCCAAGATGCTC 59.749 55.000 0.00 0.00 30.80 4.26
1652 1702 1.472480 AGGTGCCGTTGAATGCATTAC 59.528 47.619 12.97 7.11 40.07 1.89
1723 1773 1.296392 CTCATCACAAGGCCACCGA 59.704 57.895 5.01 0.00 0.00 4.69
1724 1774 2.401766 GCTCATCACAAGGCCACCG 61.402 63.158 5.01 0.00 0.00 4.94
1730 1780 3.076621 TGTGCTTTAGCTCATCACAAGG 58.923 45.455 3.10 0.00 39.29 3.61
1733 1783 4.006780 TCTTGTGCTTTAGCTCATCACA 57.993 40.909 7.25 0.00 42.97 3.58
1737 1787 6.770746 AATCATTCTTGTGCTTTAGCTCAT 57.229 33.333 7.25 0.00 42.97 2.90
1839 1904 8.362464 AGTCATCATACAAGTAGGAGTTGTTA 57.638 34.615 5.08 0.00 38.52 2.41
1840 1905 7.246171 AGTCATCATACAAGTAGGAGTTGTT 57.754 36.000 5.08 0.00 38.52 2.83
1842 1907 8.001881 AGTAGTCATCATACAAGTAGGAGTTG 57.998 38.462 1.05 0.00 34.77 3.16
1843 1908 8.056400 AGAGTAGTCATCATACAAGTAGGAGTT 58.944 37.037 0.00 0.00 28.90 3.01
1845 1910 7.936847 AGAGAGTAGTCATCATACAAGTAGGAG 59.063 40.741 0.00 0.00 28.90 3.69
1846 1911 7.807198 AGAGAGTAGTCATCATACAAGTAGGA 58.193 38.462 0.00 0.00 0.00 2.94
1847 1912 7.174253 GGAGAGAGTAGTCATCATACAAGTAGG 59.826 44.444 0.00 0.00 0.00 3.18
1848 1913 7.095397 CGGAGAGAGTAGTCATCATACAAGTAG 60.095 44.444 0.00 0.00 0.00 2.57
1849 1914 6.706716 CGGAGAGAGTAGTCATCATACAAGTA 59.293 42.308 0.00 0.00 0.00 2.24
1850 1915 5.529430 CGGAGAGAGTAGTCATCATACAAGT 59.471 44.000 0.00 0.00 0.00 3.16
1851 1916 5.529430 ACGGAGAGAGTAGTCATCATACAAG 59.471 44.000 0.00 0.00 0.00 3.16
1852 1917 5.437946 ACGGAGAGAGTAGTCATCATACAA 58.562 41.667 0.00 0.00 0.00 2.41
1853 1918 5.037383 ACGGAGAGAGTAGTCATCATACA 57.963 43.478 0.00 0.00 0.00 2.29
1854 1919 5.990386 TGTACGGAGAGAGTAGTCATCATAC 59.010 44.000 0.00 5.33 0.00 2.39
1855 1920 6.170846 TGTACGGAGAGAGTAGTCATCATA 57.829 41.667 0.00 0.00 0.00 2.15
1856 1921 5.037383 TGTACGGAGAGAGTAGTCATCAT 57.963 43.478 0.00 0.00 0.00 2.45
1857 1922 4.482952 TGTACGGAGAGAGTAGTCATCA 57.517 45.455 0.00 0.00 0.00 3.07
1858 1923 5.814764 TTTGTACGGAGAGAGTAGTCATC 57.185 43.478 0.00 0.00 0.00 2.92
1921 1986 5.647658 TGTGTTTGTTCACTCATTTCAGTCT 59.352 36.000 0.00 0.00 38.90 3.24
2115 2189 2.546789 CTCCAAACAACGTACTTCCACC 59.453 50.000 0.00 0.00 0.00 4.61
2120 2194 3.470645 AGCTCTCCAAACAACGTACTT 57.529 42.857 0.00 0.00 0.00 2.24
2177 2251 9.360093 GTAAATAGATTATTCGACAGATCCAGG 57.640 37.037 0.00 0.00 0.00 4.45
2180 2254 9.790389 ATCGTAAATAGATTATTCGACAGATCC 57.210 33.333 0.00 0.00 0.00 3.36
2250 2327 8.753497 AGATTGTTATTGGATAGGGAAAGTTC 57.247 34.615 0.00 0.00 0.00 3.01
2498 2581 6.013639 AGTGGCCGCTTAGGTTATTATTAGAT 60.014 38.462 14.67 0.00 43.70 1.98
2822 2906 2.825532 GGACTTGCTTCCATTAAAGGCA 59.174 45.455 0.00 0.00 35.49 4.75
3182 3266 5.472137 GTGAAGATACTGCAAACTGGGTAAA 59.528 40.000 0.00 0.00 0.00 2.01
3423 3507 5.120519 GCAGCAGCTTATTATGAGACAGATC 59.879 44.000 0.00 0.00 37.91 2.75
3424 3508 4.996122 GCAGCAGCTTATTATGAGACAGAT 59.004 41.667 0.00 0.00 37.91 2.90
3425 3509 4.375272 GCAGCAGCTTATTATGAGACAGA 58.625 43.478 0.00 0.00 37.91 3.41
3426 3510 3.497640 GGCAGCAGCTTATTATGAGACAG 59.502 47.826 0.00 0.00 41.70 3.51
3427 3511 3.135348 AGGCAGCAGCTTATTATGAGACA 59.865 43.478 0.00 0.00 41.70 3.41
3428 3512 3.737850 AGGCAGCAGCTTATTATGAGAC 58.262 45.455 0.00 0.00 41.70 3.36
3429 3513 4.132336 CAAGGCAGCAGCTTATTATGAGA 58.868 43.478 0.00 0.00 41.70 3.27
3430 3514 3.881688 ACAAGGCAGCAGCTTATTATGAG 59.118 43.478 0.00 0.00 41.70 2.90
3431 3515 3.628942 CACAAGGCAGCAGCTTATTATGA 59.371 43.478 0.00 0.00 41.70 2.15
3432 3516 3.628942 TCACAAGGCAGCAGCTTATTATG 59.371 43.478 0.00 0.00 41.70 1.90
3433 3517 3.629398 GTCACAAGGCAGCAGCTTATTAT 59.371 43.478 0.00 0.00 41.70 1.28
3434 3518 3.009723 GTCACAAGGCAGCAGCTTATTA 58.990 45.455 0.00 0.00 41.70 0.98
3435 3519 1.815003 GTCACAAGGCAGCAGCTTATT 59.185 47.619 0.00 0.00 41.70 1.40
3436 3520 1.457346 GTCACAAGGCAGCAGCTTAT 58.543 50.000 0.00 0.00 41.70 1.73
3437 3521 0.606401 GGTCACAAGGCAGCAGCTTA 60.606 55.000 0.00 0.00 41.70 3.09
3438 3522 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
3439 3523 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
3440 3524 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
3441 3525 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
3442 3526 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
3443 3527 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
3444 3528 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
3445 3529 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
3456 3540 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
3457 3541 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
3458 3542 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
3459 3543 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
3460 3544 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
3461 3545 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
3462 3546 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
3463 3547 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
3464 3548 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
3465 3549 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
3466 3550 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
3467 3551 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
3468 3552 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
3469 3553 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
3470 3554 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
3471 3555 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
3472 3556 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
3473 3557 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
3474 3558 1.072965 CAAGAGGCTGTTTCCAGGACT 59.927 52.381 0.00 0.00 39.22 3.85
3475 3559 1.528129 CAAGAGGCTGTTTCCAGGAC 58.472 55.000 0.00 0.00 39.22 3.85
3476 3560 0.250901 GCAAGAGGCTGTTTCCAGGA 60.251 55.000 0.00 0.00 39.22 3.86
3477 3561 0.538057 TGCAAGAGGCTGTTTCCAGG 60.538 55.000 0.00 0.00 45.15 4.45
3478 3562 0.879765 CTGCAAGAGGCTGTTTCCAG 59.120 55.000 0.00 0.00 45.15 3.86
3479 3563 0.473755 TCTGCAAGAGGCTGTTTCCA 59.526 50.000 0.00 0.00 38.67 3.53
3480 3564 3.329300 TCTGCAAGAGGCTGTTTCC 57.671 52.632 0.00 0.00 38.67 3.13
3490 3574 4.335416 CCTTTCCCTACATTTCTGCAAGA 58.665 43.478 0.00 0.00 44.68 3.02
3491 3575 3.119352 GCCTTTCCCTACATTTCTGCAAG 60.119 47.826 0.00 0.00 0.00 4.01
3492 3576 2.825532 GCCTTTCCCTACATTTCTGCAA 59.174 45.455 0.00 0.00 0.00 4.08
3493 3577 2.041620 AGCCTTTCCCTACATTTCTGCA 59.958 45.455 0.00 0.00 0.00 4.41
3494 3578 2.424956 CAGCCTTTCCCTACATTTCTGC 59.575 50.000 0.00 0.00 0.00 4.26
3495 3579 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
3496 3580 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
3497 3581 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
3498 3582 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
3499 3583 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
3500 3584 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
3501 3585 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
3502 3586 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
3503 3587 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
3504 3588 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
3505 3589 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
3506 3590 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
3507 3591 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
3508 3592 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
3509 3593 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
3510 3594 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
3511 3595 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
3512 3596 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
3513 3597 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
3514 3598 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
3515 3599 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
3516 3600 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
3526 3610 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3527 3611 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3528 3612 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3529 3613 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3530 3614 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3531 3615 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3532 3616 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3533 3617 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
3534 3618 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
3535 3619 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
3536 3620 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
3537 3621 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
3538 3622 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
3539 3623 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
3540 3624 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
3541 3625 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
3542 3626 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
3543 3627 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
3544 3628 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
3556 3640 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3559 3643 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3560 3644 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3561 3645 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3562 3646 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3564 3648 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
3565 3649 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
3566 3650 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
3567 3651 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
3568 3652 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
3569 3653 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
3570 3654 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
3571 3655 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
3572 3656 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
3597 3681 9.806448 AGAGAGCTTATTATGAGACAGATCTAA 57.194 33.333 0.00 0.00 34.34 2.10
3598 3682 9.230122 CAGAGAGCTTATTATGAGACAGATCTA 57.770 37.037 0.00 0.00 34.34 1.98
3599 3683 7.177216 CCAGAGAGCTTATTATGAGACAGATCT 59.823 40.741 0.00 0.00 38.15 2.75
3754 3838 1.826385 AAATTCAGGCACGGGAGAAG 58.174 50.000 0.00 0.00 0.00 2.85
3974 4058 9.140286 CTCTCGAGATTACTTAAATGTGACAAA 57.860 33.333 17.03 0.00 0.00 2.83
4593 4677 1.485066 GAAAGGAGGATAAGCGGTGGA 59.515 52.381 0.00 0.00 0.00 4.02
4594 4678 1.475213 GGAAAGGAGGATAAGCGGTGG 60.475 57.143 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.