Multiple sequence alignment - TraesCS2A01G489400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G489400 chr2A 100.000 3089 0 0 1 3089 723235909 723238997 0.000000e+00 5705.0
1 TraesCS2A01G489400 chr2A 95.565 992 24 8 965 1953 723225865 723226839 0.000000e+00 1570.0
2 TraesCS2A01G489400 chr2A 90.553 741 67 3 2302 3041 740406746 740407484 0.000000e+00 977.0
3 TraesCS2A01G489400 chr2A 86.429 700 84 6 2 694 329695428 329694733 0.000000e+00 756.0
4 TraesCS2A01G489400 chr2A 83.309 695 104 8 9 694 551502348 551501657 5.620000e-177 630.0
5 TraesCS2A01G489400 chr2A 85.864 191 12 4 729 904 723225664 723225854 4.070000e-44 189.0
6 TraesCS2A01G489400 chr4B 89.277 1259 66 26 738 1952 167586769 167588002 0.000000e+00 1513.0
7 TraesCS2A01G489400 chr4B 89.552 67 3 2 1952 2017 167588073 167588136 7.100000e-12 82.4
8 TraesCS2A01G489400 chr4D 89.040 1250 60 31 742 1952 109073667 109072456 0.000000e+00 1478.0
9 TraesCS2A01G489400 chr4D 85.657 251 35 1 2021 2271 422543353 422543104 2.360000e-66 263.0
10 TraesCS2A01G489400 chrUn 88.161 1267 73 30 732 1953 47069200 47067966 0.000000e+00 1437.0
11 TraesCS2A01G489400 chrUn 88.110 1270 74 30 729 1953 288708317 288709554 0.000000e+00 1437.0
12 TraesCS2A01G489400 chr2D 92.152 739 56 2 2305 3041 570989778 570989040 0.000000e+00 1042.0
13 TraesCS2A01G489400 chr2D 86.676 698 86 4 1 694 286668106 286668800 0.000000e+00 767.0
14 TraesCS2A01G489400 chr2D 84.211 703 97 10 1 694 195421115 195420418 0.000000e+00 671.0
15 TraesCS2A01G489400 chr2D 84.296 675 91 9 1 665 175589653 175590322 0.000000e+00 645.0
16 TraesCS2A01G489400 chr7A 91.644 742 60 2 2302 3041 108955537 108956278 0.000000e+00 1026.0
17 TraesCS2A01G489400 chr7A 89.333 75 7 1 3016 3089 55252497 55252571 3.280000e-15 93.5
18 TraesCS2A01G489400 chr5A 91.463 738 62 1 2305 3041 565623232 565622495 0.000000e+00 1013.0
19 TraesCS2A01G489400 chr5A 90.884 735 61 2 2308 3041 35026019 35025290 0.000000e+00 981.0
20 TraesCS2A01G489400 chr5A 84.900 702 96 6 1 694 513223776 513223077 0.000000e+00 701.0
21 TraesCS2A01G489400 chr5A 78.750 640 99 24 1284 1900 313314143 313314768 8.030000e-106 394.0
22 TraesCS2A01G489400 chr4A 91.165 747 58 3 2302 3041 29088479 29089224 0.000000e+00 1007.0
23 TraesCS2A01G489400 chr6A 90.798 739 66 2 2305 3041 185051253 185050515 0.000000e+00 987.0
24 TraesCS2A01G489400 chr6A 90.599 734 65 2 2309 3041 54073356 54074086 0.000000e+00 970.0
25 TraesCS2A01G489400 chr6A 78.218 707 135 9 1 692 407076576 407077278 4.730000e-118 435.0
26 TraesCS2A01G489400 chr6A 84.190 253 39 1 2021 2273 232141866 232141615 8.560000e-61 244.0
27 TraesCS2A01G489400 chr3B 89.116 735 76 4 2302 3035 758149440 758150171 0.000000e+00 911.0
28 TraesCS2A01G489400 chr3B 83.539 243 35 5 2033 2273 718370636 718370397 4.010000e-54 222.0
29 TraesCS2A01G489400 chr6D 86.842 646 75 5 10 647 313185571 313184928 0.000000e+00 713.0
30 TraesCS2A01G489400 chr1B 84.473 702 99 5 2 694 543462083 543462783 0.000000e+00 684.0
31 TraesCS2A01G489400 chr7D 84.000 700 99 8 1 691 399829329 399830024 0.000000e+00 660.0
32 TraesCS2A01G489400 chr7D 84.921 252 36 2 2022 2273 35555727 35555478 1.420000e-63 254.0
33 TraesCS2A01G489400 chr7D 93.151 73 3 2 3019 3089 157290333 157290261 4.210000e-19 106.0
34 TraesCS2A01G489400 chr7D 93.939 66 2 1 3024 3089 67075741 67075804 7.050000e-17 99.0
35 TraesCS2A01G489400 chr5B 86.395 588 77 2 1 588 617665906 617666490 9.340000e-180 640.0
36 TraesCS2A01G489400 chr5B 78.199 633 106 25 1284 1900 263221100 263221716 2.910000e-100 375.0
37 TraesCS2A01G489400 chr7B 77.571 700 119 19 4 690 521201847 521201173 3.740000e-104 388.0
38 TraesCS2A01G489400 chr7B 95.238 63 3 0 3027 3089 267784675 267784613 1.960000e-17 100.0
39 TraesCS2A01G489400 chr5D 77.500 640 107 23 1284 1900 240502838 240502213 1.760000e-92 350.0
40 TraesCS2A01G489400 chr6B 84.190 253 39 1 2021 2273 68595363 68595112 8.560000e-61 244.0
41 TraesCS2A01G489400 chr6B 84.190 253 39 1 2021 2273 68842470 68842219 8.560000e-61 244.0
42 TraesCS2A01G489400 chr2B 84.064 251 39 1 2021 2271 794153485 794153236 1.110000e-59 241.0
43 TraesCS2A01G489400 chr2B 85.393 89 7 6 3006 3089 304830832 304830919 1.530000e-13 87.9
44 TraesCS2A01G489400 chr1A 83.794 253 40 1 2021 2273 136952761 136952510 3.980000e-59 239.0
45 TraesCS2A01G489400 chr3D 83.004 253 37 4 2021 2273 2102833 2103079 1.110000e-54 224.0
46 TraesCS2A01G489400 chr3D 94.030 67 2 1 3023 3089 602103845 602103781 1.960000e-17 100.0
47 TraesCS2A01G489400 chr3D 92.647 68 3 2 3023 3089 474593069 474593135 2.540000e-16 97.1
48 TraesCS2A01G489400 chr3A 98.361 61 0 1 3029 3089 29686738 29686797 4.210000e-19 106.0
49 TraesCS2A01G489400 chr3A 95.312 64 1 2 3028 3089 391503839 391503776 1.960000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G489400 chr2A 723235909 723238997 3088 False 5705.0 5705 100.0000 1 3089 1 chr2A.!!$F1 3088
1 TraesCS2A01G489400 chr2A 740406746 740407484 738 False 977.0 977 90.5530 2302 3041 1 chr2A.!!$F2 739
2 TraesCS2A01G489400 chr2A 723225664 723226839 1175 False 879.5 1570 90.7145 729 1953 2 chr2A.!!$F3 1224
3 TraesCS2A01G489400 chr2A 329694733 329695428 695 True 756.0 756 86.4290 2 694 1 chr2A.!!$R1 692
4 TraesCS2A01G489400 chr2A 551501657 551502348 691 True 630.0 630 83.3090 9 694 1 chr2A.!!$R2 685
5 TraesCS2A01G489400 chr4B 167586769 167588136 1367 False 797.7 1513 89.4145 738 2017 2 chr4B.!!$F1 1279
6 TraesCS2A01G489400 chr4D 109072456 109073667 1211 True 1478.0 1478 89.0400 742 1952 1 chr4D.!!$R1 1210
7 TraesCS2A01G489400 chrUn 47067966 47069200 1234 True 1437.0 1437 88.1610 732 1953 1 chrUn.!!$R1 1221
8 TraesCS2A01G489400 chrUn 288708317 288709554 1237 False 1437.0 1437 88.1100 729 1953 1 chrUn.!!$F1 1224
9 TraesCS2A01G489400 chr2D 570989040 570989778 738 True 1042.0 1042 92.1520 2305 3041 1 chr2D.!!$R2 736
10 TraesCS2A01G489400 chr2D 286668106 286668800 694 False 767.0 767 86.6760 1 694 1 chr2D.!!$F2 693
11 TraesCS2A01G489400 chr2D 195420418 195421115 697 True 671.0 671 84.2110 1 694 1 chr2D.!!$R1 693
12 TraesCS2A01G489400 chr2D 175589653 175590322 669 False 645.0 645 84.2960 1 665 1 chr2D.!!$F1 664
13 TraesCS2A01G489400 chr7A 108955537 108956278 741 False 1026.0 1026 91.6440 2302 3041 1 chr7A.!!$F2 739
14 TraesCS2A01G489400 chr5A 565622495 565623232 737 True 1013.0 1013 91.4630 2305 3041 1 chr5A.!!$R3 736
15 TraesCS2A01G489400 chr5A 35025290 35026019 729 True 981.0 981 90.8840 2308 3041 1 chr5A.!!$R1 733
16 TraesCS2A01G489400 chr5A 513223077 513223776 699 True 701.0 701 84.9000 1 694 1 chr5A.!!$R2 693
17 TraesCS2A01G489400 chr5A 313314143 313314768 625 False 394.0 394 78.7500 1284 1900 1 chr5A.!!$F1 616
18 TraesCS2A01G489400 chr4A 29088479 29089224 745 False 1007.0 1007 91.1650 2302 3041 1 chr4A.!!$F1 739
19 TraesCS2A01G489400 chr6A 185050515 185051253 738 True 987.0 987 90.7980 2305 3041 1 chr6A.!!$R1 736
20 TraesCS2A01G489400 chr6A 54073356 54074086 730 False 970.0 970 90.5990 2309 3041 1 chr6A.!!$F1 732
21 TraesCS2A01G489400 chr6A 407076576 407077278 702 False 435.0 435 78.2180 1 692 1 chr6A.!!$F2 691
22 TraesCS2A01G489400 chr3B 758149440 758150171 731 False 911.0 911 89.1160 2302 3035 1 chr3B.!!$F1 733
23 TraesCS2A01G489400 chr6D 313184928 313185571 643 True 713.0 713 86.8420 10 647 1 chr6D.!!$R1 637
24 TraesCS2A01G489400 chr1B 543462083 543462783 700 False 684.0 684 84.4730 2 694 1 chr1B.!!$F1 692
25 TraesCS2A01G489400 chr7D 399829329 399830024 695 False 660.0 660 84.0000 1 691 1 chr7D.!!$F2 690
26 TraesCS2A01G489400 chr5B 617665906 617666490 584 False 640.0 640 86.3950 1 588 1 chr5B.!!$F2 587
27 TraesCS2A01G489400 chr5B 263221100 263221716 616 False 375.0 375 78.1990 1284 1900 1 chr5B.!!$F1 616
28 TraesCS2A01G489400 chr7B 521201173 521201847 674 True 388.0 388 77.5710 4 690 1 chr7B.!!$R2 686
29 TraesCS2A01G489400 chr5D 240502213 240502838 625 True 350.0 350 77.5000 1284 1900 1 chr5D.!!$R1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 332 0.038166 GTCCCATTCTTCAGTGCCCA 59.962 55.0 0.0 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 2326 0.031721 GTAGCAGGTTATCCCGGTCG 59.968 60.0 0.0 0.0 38.74 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 1.451207 CCGTCGGGAATCCATTGCA 60.451 57.895 2.34 0.00 34.06 4.08
67 68 1.779221 GGGAATCCATTGCATCCACA 58.221 50.000 0.09 0.00 33.48 4.17
301 316 2.462782 CGTCGTCGAGGAGGAGTCC 61.463 68.421 20.00 0.00 44.33 3.85
317 332 0.038166 GTCCCATTCTTCAGTGCCCA 59.962 55.000 0.00 0.00 0.00 5.36
370 386 4.295119 GTGGTGGACGTCGGCAGT 62.295 66.667 9.92 0.00 0.00 4.40
462 478 0.755698 GAGTAGGGCATGGGAGACGA 60.756 60.000 0.00 0.00 0.00 4.20
466 482 2.577059 GGCATGGGAGACGACGAA 59.423 61.111 0.00 0.00 0.00 3.85
481 497 0.896940 ACGAAGCCTTGAGTCCCGTA 60.897 55.000 0.00 0.00 0.00 4.02
496 512 1.653115 CGTAAGCCGGCTCGTATCT 59.347 57.895 32.93 16.18 0.00 1.98
504 520 1.004440 GGCTCGTATCTCATGCCCC 60.004 63.158 0.00 0.00 37.81 5.80
574 590 2.676121 CGGACATGGCAAGGGCAA 60.676 61.111 0.00 0.00 42.43 4.52
628 653 4.788201 GCTCAAAGAACGTTGTGTTGCATA 60.788 41.667 5.00 0.00 42.09 3.14
700 725 3.948735 TTTTTGAGGGGTCCGCTAG 57.051 52.632 8.73 0.00 0.00 3.42
701 726 1.354101 TTTTTGAGGGGTCCGCTAGA 58.646 50.000 8.73 0.00 0.00 2.43
702 727 1.354101 TTTTGAGGGGTCCGCTAGAA 58.646 50.000 8.73 4.03 0.00 2.10
703 728 1.580059 TTTGAGGGGTCCGCTAGAAT 58.420 50.000 8.73 0.00 0.00 2.40
704 729 1.580059 TTGAGGGGTCCGCTAGAATT 58.420 50.000 8.73 0.00 0.00 2.17
705 730 0.830648 TGAGGGGTCCGCTAGAATTG 59.169 55.000 8.73 0.00 0.00 2.32
706 731 0.533085 GAGGGGTCCGCTAGAATTGC 60.533 60.000 8.73 0.00 0.00 3.56
707 732 1.526225 GGGGTCCGCTAGAATTGCC 60.526 63.158 0.00 0.00 0.00 4.52
708 733 1.223487 GGGTCCGCTAGAATTGCCA 59.777 57.895 0.00 0.00 0.00 4.92
709 734 0.393808 GGGTCCGCTAGAATTGCCAA 60.394 55.000 0.00 0.00 0.00 4.52
710 735 1.017387 GGTCCGCTAGAATTGCCAAG 58.983 55.000 0.00 0.00 0.00 3.61
711 736 1.679032 GGTCCGCTAGAATTGCCAAGT 60.679 52.381 0.00 0.00 0.00 3.16
712 737 2.084546 GTCCGCTAGAATTGCCAAGTT 58.915 47.619 0.00 0.00 0.00 2.66
713 738 2.096013 GTCCGCTAGAATTGCCAAGTTC 59.904 50.000 0.00 0.00 0.00 3.01
714 739 1.062587 CCGCTAGAATTGCCAAGTTCG 59.937 52.381 0.00 0.00 0.00 3.95
715 740 1.062587 CGCTAGAATTGCCAAGTTCGG 59.937 52.381 0.00 0.00 0.00 4.30
724 749 2.677971 CCAAGTTCGGCCGTAGATG 58.322 57.895 27.15 19.16 0.00 2.90
725 750 1.429148 CCAAGTTCGGCCGTAGATGC 61.429 60.000 27.15 9.88 0.00 3.91
726 751 0.460284 CAAGTTCGGCCGTAGATGCT 60.460 55.000 27.15 12.00 0.00 3.79
727 752 0.249398 AAGTTCGGCCGTAGATGCTT 59.751 50.000 27.15 16.88 0.00 3.91
730 755 1.467342 GTTCGGCCGTAGATGCTTTTT 59.533 47.619 27.15 0.00 0.00 1.94
735 760 2.488153 GGCCGTAGATGCTTTTTCAAGT 59.512 45.455 0.00 0.00 31.86 3.16
759 784 7.277981 AGTTTAGCTTAATCGATCAAATGACGT 59.722 33.333 0.00 0.00 0.00 4.34
813 841 8.804688 TTCTTGAAACACGAGAAAAAGAAAAA 57.195 26.923 0.00 0.00 43.57 1.94
833 861 0.387565 AAAATCAAACGGCGGCAACT 59.612 45.000 13.24 0.00 0.00 3.16
871 909 1.205064 CGTCTCAAAAGCAGCACGG 59.795 57.895 0.00 0.00 0.00 4.94
956 1005 3.449227 CCACGCGCTACCTCCTCA 61.449 66.667 5.73 0.00 0.00 3.86
957 1006 2.103143 CACGCGCTACCTCCTCAG 59.897 66.667 5.73 0.00 0.00 3.35
958 1007 2.361357 ACGCGCTACCTCCTCAGT 60.361 61.111 5.73 0.00 0.00 3.41
959 1008 2.408241 ACGCGCTACCTCCTCAGTC 61.408 63.158 5.73 0.00 0.00 3.51
960 1009 2.115911 CGCGCTACCTCCTCAGTCT 61.116 63.158 5.56 0.00 0.00 3.24
961 1010 0.814410 CGCGCTACCTCCTCAGTCTA 60.814 60.000 5.56 0.00 0.00 2.59
962 1011 1.611519 GCGCTACCTCCTCAGTCTAT 58.388 55.000 0.00 0.00 0.00 1.98
963 1012 2.780714 GCGCTACCTCCTCAGTCTATA 58.219 52.381 0.00 0.00 0.00 1.31
1015 1066 3.429492 TCATCAGCTCACACTCTTCTCT 58.571 45.455 0.00 0.00 0.00 3.10
1018 1069 1.809547 CAGCTCACACTCTTCTCTCGA 59.190 52.381 0.00 0.00 0.00 4.04
1060 1112 2.904866 CACACACCCAACCCACCG 60.905 66.667 0.00 0.00 0.00 4.94
1061 1113 4.887190 ACACACCCAACCCACCGC 62.887 66.667 0.00 0.00 0.00 5.68
1140 1194 2.271497 GCTGCTGCCACTCTCCAT 59.729 61.111 3.85 0.00 0.00 3.41
1170 1224 2.534019 CGCCAACTGACAACAGCGT 61.534 57.895 0.00 0.00 46.95 5.07
1533 1632 3.066814 GGTCGGCGTGGACTACCT 61.067 66.667 6.85 0.00 37.12 3.08
1639 1738 1.066422 GACGCTGATCTCGATGCCA 59.934 57.895 13.37 0.00 0.00 4.92
1643 1742 0.388659 GCTGATCTCGATGCCACTCT 59.611 55.000 0.00 0.00 0.00 3.24
1964 2139 1.594194 GATCACGGGGTGCATGCAAA 61.594 55.000 24.58 0.00 32.98 3.68
1977 2152 5.516339 GGTGCATGCAAATAGTACAATCAAC 59.484 40.000 24.58 3.44 0.00 3.18
1978 2153 5.227805 GTGCATGCAAATAGTACAATCAACG 59.772 40.000 24.58 0.00 0.00 4.10
1979 2154 5.123027 TGCATGCAAATAGTACAATCAACGA 59.877 36.000 20.30 0.00 0.00 3.85
1980 2155 5.678483 GCATGCAAATAGTACAATCAACGAG 59.322 40.000 14.21 0.00 0.00 4.18
2012 2187 5.503683 GCATTCTGATCAGTTGTAGATGCAC 60.504 44.000 21.92 3.47 0.00 4.57
2017 2192 5.043248 TGATCAGTTGTAGATGCACGTATG 58.957 41.667 0.00 0.00 0.00 2.39
2029 2204 2.846039 CACGTATGCTACCTCGAAGT 57.154 50.000 0.00 0.00 0.00 3.01
2030 2205 3.146618 CACGTATGCTACCTCGAAGTT 57.853 47.619 0.00 0.00 0.00 2.66
2031 2206 2.852413 CACGTATGCTACCTCGAAGTTG 59.148 50.000 0.00 0.00 0.00 3.16
2032 2207 2.490903 ACGTATGCTACCTCGAAGTTGT 59.509 45.455 0.00 0.00 0.00 3.32
2033 2208 3.691118 ACGTATGCTACCTCGAAGTTGTA 59.309 43.478 0.00 0.00 0.00 2.41
2034 2209 4.201891 ACGTATGCTACCTCGAAGTTGTAG 60.202 45.833 0.00 0.00 36.39 2.74
2035 2210 4.034858 CGTATGCTACCTCGAAGTTGTAGA 59.965 45.833 12.59 0.00 35.75 2.59
2036 2211 3.844577 TGCTACCTCGAAGTTGTAGAC 57.155 47.619 12.59 6.80 35.75 2.59
2037 2212 2.161012 TGCTACCTCGAAGTTGTAGACG 59.839 50.000 12.59 0.00 35.75 4.18
2038 2213 2.417933 GCTACCTCGAAGTTGTAGACGA 59.582 50.000 12.59 0.00 35.75 4.20
2039 2214 3.120060 GCTACCTCGAAGTTGTAGACGAA 60.120 47.826 12.59 0.00 35.75 3.85
2040 2215 3.996150 ACCTCGAAGTTGTAGACGAAA 57.004 42.857 0.00 0.00 34.50 3.46
2041 2216 4.311816 ACCTCGAAGTTGTAGACGAAAA 57.688 40.909 0.00 0.00 34.50 2.29
2042 2217 4.047142 ACCTCGAAGTTGTAGACGAAAAC 58.953 43.478 0.00 0.00 34.50 2.43
2043 2218 4.202090 ACCTCGAAGTTGTAGACGAAAACT 60.202 41.667 0.00 0.00 35.70 2.66
2044 2219 5.009010 ACCTCGAAGTTGTAGACGAAAACTA 59.991 40.000 0.00 0.00 33.09 2.24
2045 2220 5.916883 CCTCGAAGTTGTAGACGAAAACTAA 59.083 40.000 0.00 0.00 33.09 2.24
2046 2221 6.418819 CCTCGAAGTTGTAGACGAAAACTAAA 59.581 38.462 0.00 0.00 33.09 1.85
2047 2222 7.115947 CCTCGAAGTTGTAGACGAAAACTAAAT 59.884 37.037 0.00 0.00 33.09 1.40
2048 2223 8.000285 TCGAAGTTGTAGACGAAAACTAAATC 58.000 34.615 0.00 0.00 33.09 2.17
2049 2224 7.648908 TCGAAGTTGTAGACGAAAACTAAATCA 59.351 33.333 0.00 0.00 33.09 2.57
2050 2225 8.270799 CGAAGTTGTAGACGAAAACTAAATCAA 58.729 33.333 0.00 0.00 33.09 2.57
2051 2226 9.925268 GAAGTTGTAGACGAAAACTAAATCAAA 57.075 29.630 0.00 0.00 33.09 2.69
2054 2229 9.326339 GTTGTAGACGAAAACTAAATCAAATCC 57.674 33.333 0.00 0.00 0.00 3.01
2055 2230 8.842358 TGTAGACGAAAACTAAATCAAATCCT 57.158 30.769 0.00 0.00 0.00 3.24
2056 2231 8.717821 TGTAGACGAAAACTAAATCAAATCCTG 58.282 33.333 0.00 0.00 0.00 3.86
2057 2232 7.979444 AGACGAAAACTAAATCAAATCCTGA 57.021 32.000 0.00 0.00 38.81 3.86
2058 2233 8.391075 AGACGAAAACTAAATCAAATCCTGAA 57.609 30.769 0.00 0.00 37.67 3.02
2059 2234 8.290325 AGACGAAAACTAAATCAAATCCTGAAC 58.710 33.333 0.00 0.00 37.67 3.18
2060 2235 8.166422 ACGAAAACTAAATCAAATCCTGAACT 57.834 30.769 0.00 0.00 37.67 3.01
2061 2236 8.630037 ACGAAAACTAAATCAAATCCTGAACTT 58.370 29.630 0.00 0.00 37.67 2.66
2062 2237 9.118236 CGAAAACTAAATCAAATCCTGAACTTC 57.882 33.333 0.00 0.00 37.67 3.01
2063 2238 9.118236 GAAAACTAAATCAAATCCTGAACTTCG 57.882 33.333 0.00 0.00 37.67 3.79
2064 2239 7.979444 AACTAAATCAAATCCTGAACTTCGA 57.021 32.000 0.00 0.00 37.67 3.71
2065 2240 7.979444 ACTAAATCAAATCCTGAACTTCGAA 57.021 32.000 0.00 0.00 37.67 3.71
2066 2241 8.567285 ACTAAATCAAATCCTGAACTTCGAAT 57.433 30.769 0.00 0.00 37.67 3.34
2067 2242 9.014297 ACTAAATCAAATCCTGAACTTCGAATT 57.986 29.630 0.00 0.00 37.67 2.17
2068 2243 9.495754 CTAAATCAAATCCTGAACTTCGAATTC 57.504 33.333 0.00 5.90 37.67 2.17
2069 2244 5.880054 TCAAATCCTGAACTTCGAATTCC 57.120 39.130 0.00 0.00 0.00 3.01
2070 2245 4.391830 TCAAATCCTGAACTTCGAATTCCG 59.608 41.667 0.00 2.08 40.25 4.30
2071 2246 2.380084 TCCTGAACTTCGAATTCCGG 57.620 50.000 16.98 16.98 39.14 5.14
2072 2247 1.897133 TCCTGAACTTCGAATTCCGGA 59.103 47.619 19.53 19.53 37.19 5.14
2073 2248 2.300723 TCCTGAACTTCGAATTCCGGAA 59.699 45.455 21.37 21.37 36.76 4.30
2074 2249 3.071479 CCTGAACTTCGAATTCCGGAAA 58.929 45.455 23.08 0.52 39.14 3.13
2075 2250 3.689649 CCTGAACTTCGAATTCCGGAAAT 59.310 43.478 23.08 13.97 39.14 2.17
2076 2251 4.156008 CCTGAACTTCGAATTCCGGAAATT 59.844 41.667 23.08 15.53 40.34 1.82
2077 2252 5.041951 TGAACTTCGAATTCCGGAAATTG 57.958 39.130 23.08 17.34 37.70 2.32
2078 2253 4.757657 TGAACTTCGAATTCCGGAAATTGA 59.242 37.500 23.08 19.59 37.70 2.57
2079 2254 4.680171 ACTTCGAATTCCGGAAATTGAC 57.320 40.909 23.08 9.79 37.70 3.18
2080 2255 4.069304 ACTTCGAATTCCGGAAATTGACA 58.931 39.130 23.08 11.58 37.70 3.58
2081 2256 4.154195 ACTTCGAATTCCGGAAATTGACAG 59.846 41.667 23.08 20.74 37.70 3.51
2082 2257 3.670625 TCGAATTCCGGAAATTGACAGT 58.329 40.909 23.08 0.00 37.70 3.55
2083 2258 4.069304 TCGAATTCCGGAAATTGACAGTT 58.931 39.130 23.08 8.14 37.70 3.16
2084 2259 4.153475 TCGAATTCCGGAAATTGACAGTTC 59.847 41.667 23.08 15.91 37.70 3.01
2085 2260 4.154195 CGAATTCCGGAAATTGACAGTTCT 59.846 41.667 23.08 0.00 37.70 3.01
2086 2261 5.376854 AATTCCGGAAATTGACAGTTCTG 57.623 39.130 23.08 0.00 36.20 3.02
2087 2262 3.762407 TCCGGAAATTGACAGTTCTGA 57.238 42.857 0.00 2.38 35.71 3.27
2088 2263 4.079980 TCCGGAAATTGACAGTTCTGAA 57.920 40.909 0.00 0.00 35.71 3.02
2089 2264 3.813166 TCCGGAAATTGACAGTTCTGAAC 59.187 43.478 12.54 12.54 35.71 3.18
2090 2265 3.815401 CCGGAAATTGACAGTTCTGAACT 59.185 43.478 17.00 17.00 44.06 3.01
2091 2266 4.275936 CCGGAAATTGACAGTTCTGAACTT 59.724 41.667 19.89 11.69 40.46 2.66
2092 2267 5.207768 CGGAAATTGACAGTTCTGAACTTG 58.792 41.667 19.89 16.57 40.46 3.16
2093 2268 5.220854 CGGAAATTGACAGTTCTGAACTTGT 60.221 40.000 19.89 19.23 40.46 3.16
2094 2269 6.018262 CGGAAATTGACAGTTCTGAACTTGTA 60.018 38.462 19.89 6.78 40.46 2.41
2095 2270 7.466725 CGGAAATTGACAGTTCTGAACTTGTAA 60.467 37.037 19.89 14.36 40.46 2.41
2096 2271 8.352942 GGAAATTGACAGTTCTGAACTTGTAAT 58.647 33.333 19.89 15.73 40.46 1.89
2097 2272 9.736023 GAAATTGACAGTTCTGAACTTGTAATT 57.264 29.630 19.89 19.59 40.46 1.40
2099 2274 9.520204 AATTGACAGTTCTGAACTTGTAATTTG 57.480 29.630 19.89 9.92 40.46 2.32
2100 2275 7.026631 TGACAGTTCTGAACTTGTAATTTGG 57.973 36.000 19.89 8.46 40.46 3.28
2101 2276 6.039270 TGACAGTTCTGAACTTGTAATTTGGG 59.961 38.462 19.89 7.79 40.46 4.12
2102 2277 5.221244 ACAGTTCTGAACTTGTAATTTGGGC 60.221 40.000 19.89 0.00 40.46 5.36
2103 2278 4.280929 AGTTCTGAACTTGTAATTTGGGCC 59.719 41.667 17.00 0.00 39.04 5.80
2104 2279 4.112634 TCTGAACTTGTAATTTGGGCCT 57.887 40.909 4.53 0.00 0.00 5.19
2105 2280 5.249780 TCTGAACTTGTAATTTGGGCCTA 57.750 39.130 4.53 0.00 0.00 3.93
2106 2281 5.826643 TCTGAACTTGTAATTTGGGCCTAT 58.173 37.500 4.53 0.00 0.00 2.57
2107 2282 6.252995 TCTGAACTTGTAATTTGGGCCTATT 58.747 36.000 4.53 7.38 0.00 1.73
2108 2283 6.723977 TCTGAACTTGTAATTTGGGCCTATTT 59.276 34.615 4.53 2.44 0.00 1.40
2109 2284 7.234577 TCTGAACTTGTAATTTGGGCCTATTTT 59.765 33.333 4.53 0.00 0.00 1.82
2110 2285 7.158021 TGAACTTGTAATTTGGGCCTATTTTG 58.842 34.615 4.53 0.00 0.00 2.44
2111 2286 6.048732 ACTTGTAATTTGGGCCTATTTTGG 57.951 37.500 4.53 0.12 0.00 3.28
2112 2287 5.782845 ACTTGTAATTTGGGCCTATTTTGGA 59.217 36.000 4.53 0.00 0.00 3.53
2113 2288 5.669164 TGTAATTTGGGCCTATTTTGGAC 57.331 39.130 4.53 0.93 0.00 4.02
2118 2293 1.963172 GGGCCTATTTTGGACCGTAG 58.037 55.000 0.84 0.00 46.79 3.51
2119 2294 1.487558 GGGCCTATTTTGGACCGTAGA 59.512 52.381 0.84 0.00 46.79 2.59
2120 2295 2.558378 GGCCTATTTTGGACCGTAGAC 58.442 52.381 0.00 0.00 0.00 2.59
2121 2296 2.558378 GCCTATTTTGGACCGTAGACC 58.442 52.381 0.00 0.00 0.00 3.85
2122 2297 2.169978 GCCTATTTTGGACCGTAGACCT 59.830 50.000 0.00 0.00 0.00 3.85
2123 2298 3.385755 GCCTATTTTGGACCGTAGACCTA 59.614 47.826 0.00 0.00 0.00 3.08
2124 2299 4.040095 GCCTATTTTGGACCGTAGACCTAT 59.960 45.833 0.00 0.00 0.00 2.57
2125 2300 5.454329 GCCTATTTTGGACCGTAGACCTATT 60.454 44.000 0.00 0.00 0.00 1.73
2126 2301 6.589135 CCTATTTTGGACCGTAGACCTATTT 58.411 40.000 0.00 0.00 0.00 1.40
2127 2302 6.482308 CCTATTTTGGACCGTAGACCTATTTG 59.518 42.308 0.00 0.00 0.00 2.32
2128 2303 3.899052 TTGGACCGTAGACCTATTTGG 57.101 47.619 0.00 0.00 42.93 3.28
2129 2304 1.483415 TGGACCGTAGACCTATTTGGC 59.517 52.381 0.00 0.00 40.22 4.52
2130 2305 1.202615 GGACCGTAGACCTATTTGGCC 60.203 57.143 0.00 0.00 40.22 5.36
2131 2306 0.835276 ACCGTAGACCTATTTGGCCC 59.165 55.000 0.00 0.00 40.22 5.80
2132 2307 0.834612 CCGTAGACCTATTTGGCCCA 59.165 55.000 0.00 0.00 40.22 5.36
2133 2308 1.420138 CCGTAGACCTATTTGGCCCAT 59.580 52.381 0.00 0.00 40.22 4.00
2134 2309 2.158667 CCGTAGACCTATTTGGCCCATT 60.159 50.000 0.00 0.00 40.22 3.16
2135 2310 2.878406 CGTAGACCTATTTGGCCCATTG 59.122 50.000 0.00 0.00 40.22 2.82
2136 2311 2.459555 AGACCTATTTGGCCCATTGG 57.540 50.000 0.00 5.58 40.22 3.16
2138 2313 1.014804 ACCTATTTGGCCCATTGGGA 58.985 50.000 26.52 4.43 46.48 4.37
2139 2314 1.364328 ACCTATTTGGCCCATTGGGAA 59.636 47.619 26.52 11.31 46.48 3.97
2140 2315 2.022133 ACCTATTTGGCCCATTGGGAAT 60.022 45.455 26.52 17.50 46.48 3.01
2141 2316 3.208692 ACCTATTTGGCCCATTGGGAATA 59.791 43.478 26.52 17.67 46.48 1.75
2142 2317 4.695318 ACCTATTTGGCCCATTGGGAATAG 60.695 45.833 26.52 24.37 46.48 1.73
2143 2318 7.136153 ACCTATTTGGCCCATTGGGAATAGT 62.136 44.000 26.52 15.03 46.48 2.12
2144 2319 7.851754 ACCTATTTGGCCCATTGGGAATAGTA 61.852 42.308 26.52 10.50 46.48 1.82
2145 2320 9.089849 ACCTATTTGGCCCATTGGGAATAGTAT 62.090 40.741 26.52 14.95 46.48 2.12
2156 2331 4.382345 GGGAATAGTATAATCCCGACCG 57.618 50.000 4.45 0.00 43.20 4.79
2157 2332 3.131755 GGGAATAGTATAATCCCGACCGG 59.868 52.174 0.00 0.00 43.20 5.28
2167 2342 2.108362 CCGACCGGGATAACCTGC 59.892 66.667 6.32 0.00 40.99 4.85
2168 2343 2.432300 CCGACCGGGATAACCTGCT 61.432 63.158 6.32 0.00 40.99 4.24
2169 2344 1.111116 CCGACCGGGATAACCTGCTA 61.111 60.000 6.32 0.00 40.99 3.49
2170 2345 0.031721 CGACCGGGATAACCTGCTAC 59.968 60.000 6.32 0.00 40.99 3.58
2171 2346 1.411041 GACCGGGATAACCTGCTACT 58.589 55.000 6.32 0.00 40.99 2.57
2172 2347 1.340568 GACCGGGATAACCTGCTACTC 59.659 57.143 6.32 0.00 40.99 2.59
2173 2348 1.063114 ACCGGGATAACCTGCTACTCT 60.063 52.381 6.32 0.00 40.99 3.24
2174 2349 1.614413 CCGGGATAACCTGCTACTCTC 59.386 57.143 0.00 0.00 40.99 3.20
2175 2350 2.307768 CGGGATAACCTGCTACTCTCA 58.692 52.381 0.00 0.00 35.63 3.27
2176 2351 2.034812 CGGGATAACCTGCTACTCTCAC 59.965 54.545 0.00 0.00 35.63 3.51
2177 2352 3.031736 GGGATAACCTGCTACTCTCACA 58.968 50.000 0.00 0.00 35.85 3.58
2178 2353 3.068873 GGGATAACCTGCTACTCTCACAG 59.931 52.174 0.00 0.00 35.85 3.66
2179 2354 3.954904 GGATAACCTGCTACTCTCACAGA 59.045 47.826 0.00 0.00 33.10 3.41
2180 2355 4.202070 GGATAACCTGCTACTCTCACAGAC 60.202 50.000 0.00 0.00 33.10 3.51
2181 2356 2.294449 ACCTGCTACTCTCACAGACA 57.706 50.000 0.00 0.00 33.10 3.41
2182 2357 2.598565 ACCTGCTACTCTCACAGACAA 58.401 47.619 0.00 0.00 33.10 3.18
2183 2358 2.560542 ACCTGCTACTCTCACAGACAAG 59.439 50.000 0.00 0.00 33.10 3.16
2184 2359 2.822561 CCTGCTACTCTCACAGACAAGA 59.177 50.000 0.00 0.00 33.10 3.02
2185 2360 3.256879 CCTGCTACTCTCACAGACAAGAA 59.743 47.826 0.00 0.00 33.10 2.52
2186 2361 4.081752 CCTGCTACTCTCACAGACAAGAAT 60.082 45.833 0.00 0.00 33.10 2.40
2187 2362 5.474578 TGCTACTCTCACAGACAAGAATT 57.525 39.130 0.00 0.00 0.00 2.17
2188 2363 5.858381 TGCTACTCTCACAGACAAGAATTT 58.142 37.500 0.00 0.00 0.00 1.82
2189 2364 5.698089 TGCTACTCTCACAGACAAGAATTTG 59.302 40.000 0.00 0.00 40.24 2.32
2190 2365 5.121454 GCTACTCTCACAGACAAGAATTTGG 59.879 44.000 0.00 0.00 38.66 3.28
2191 2366 3.817647 ACTCTCACAGACAAGAATTTGGC 59.182 43.478 0.00 0.00 43.02 4.52
2192 2367 3.817084 CTCTCACAGACAAGAATTTGGCA 59.183 43.478 0.00 0.00 45.25 4.92
2193 2368 4.401022 TCTCACAGACAAGAATTTGGCAT 58.599 39.130 0.00 0.00 45.25 4.40
2194 2369 4.216902 TCTCACAGACAAGAATTTGGCATG 59.783 41.667 0.00 0.00 45.25 4.06
2195 2370 3.256383 TCACAGACAAGAATTTGGCATGG 59.744 43.478 0.00 0.00 45.25 3.66
2196 2371 2.028748 ACAGACAAGAATTTGGCATGGC 60.029 45.455 13.29 13.29 45.25 4.40
2197 2372 2.232941 CAGACAAGAATTTGGCATGGCT 59.767 45.455 21.08 0.00 45.25 4.75
2198 2373 2.494870 AGACAAGAATTTGGCATGGCTC 59.505 45.455 21.08 9.43 45.25 4.70
2199 2374 2.231964 GACAAGAATTTGGCATGGCTCA 59.768 45.455 21.08 7.12 42.21 4.26
2200 2375 2.028748 ACAAGAATTTGGCATGGCTCAC 60.029 45.455 21.08 7.48 38.66 3.51
2201 2376 2.226962 AGAATTTGGCATGGCTCACT 57.773 45.000 21.08 9.53 0.00 3.41
2202 2377 3.370840 AGAATTTGGCATGGCTCACTA 57.629 42.857 21.08 0.00 0.00 2.74
2203 2378 3.907221 AGAATTTGGCATGGCTCACTAT 58.093 40.909 21.08 3.87 0.00 2.12
2204 2379 5.052693 AGAATTTGGCATGGCTCACTATA 57.947 39.130 21.08 0.00 0.00 1.31
2205 2380 5.448654 AGAATTTGGCATGGCTCACTATAA 58.551 37.500 21.08 1.06 0.00 0.98
2206 2381 5.300286 AGAATTTGGCATGGCTCACTATAAC 59.700 40.000 21.08 3.52 0.00 1.89
2207 2382 3.643199 TTGGCATGGCTCACTATAACA 57.357 42.857 21.08 0.00 0.00 2.41
2208 2383 3.643199 TGGCATGGCTCACTATAACAA 57.357 42.857 21.08 0.00 0.00 2.83
2209 2384 3.961849 TGGCATGGCTCACTATAACAAA 58.038 40.909 21.08 0.00 0.00 2.83
2210 2385 4.339748 TGGCATGGCTCACTATAACAAAA 58.660 39.130 21.08 0.00 0.00 2.44
2211 2386 4.157656 TGGCATGGCTCACTATAACAAAAC 59.842 41.667 21.08 0.00 0.00 2.43
2212 2387 4.157656 GGCATGGCTCACTATAACAAAACA 59.842 41.667 12.86 0.00 0.00 2.83
2213 2388 5.336372 GGCATGGCTCACTATAACAAAACAA 60.336 40.000 12.86 0.00 0.00 2.83
2214 2389 5.801947 GCATGGCTCACTATAACAAAACAAG 59.198 40.000 0.00 0.00 0.00 3.16
2215 2390 6.349280 GCATGGCTCACTATAACAAAACAAGA 60.349 38.462 0.00 0.00 0.00 3.02
2216 2391 7.592938 CATGGCTCACTATAACAAAACAAGAA 58.407 34.615 0.00 0.00 0.00 2.52
2217 2392 7.759489 TGGCTCACTATAACAAAACAAGAAT 57.241 32.000 0.00 0.00 0.00 2.40
2218 2393 8.177119 TGGCTCACTATAACAAAACAAGAATT 57.823 30.769 0.00 0.00 0.00 2.17
2219 2394 8.296713 TGGCTCACTATAACAAAACAAGAATTC 58.703 33.333 0.00 0.00 0.00 2.17
2220 2395 7.481798 GGCTCACTATAACAAAACAAGAATTCG 59.518 37.037 0.00 0.00 0.00 3.34
2221 2396 8.015658 GCTCACTATAACAAAACAAGAATTCGT 58.984 33.333 0.00 0.00 0.00 3.85
2222 2397 9.530129 CTCACTATAACAAAACAAGAATTCGTC 57.470 33.333 0.00 0.00 0.00 4.20
2223 2398 9.047371 TCACTATAACAAAACAAGAATTCGTCA 57.953 29.630 0.00 0.00 0.00 4.35
2224 2399 9.318041 CACTATAACAAAACAAGAATTCGTCAG 57.682 33.333 0.00 0.00 0.00 3.51
2225 2400 8.504005 ACTATAACAAAACAAGAATTCGTCAGG 58.496 33.333 0.00 0.00 0.00 3.86
2226 2401 5.576447 AACAAAACAAGAATTCGTCAGGT 57.424 34.783 0.00 0.00 0.00 4.00
2227 2402 5.169836 ACAAAACAAGAATTCGTCAGGTC 57.830 39.130 0.00 0.00 0.00 3.85
2228 2403 4.881850 ACAAAACAAGAATTCGTCAGGTCT 59.118 37.500 0.00 0.00 0.00 3.85
2229 2404 6.053005 ACAAAACAAGAATTCGTCAGGTCTA 58.947 36.000 0.00 0.00 0.00 2.59
2230 2405 6.540914 ACAAAACAAGAATTCGTCAGGTCTAA 59.459 34.615 0.00 0.00 0.00 2.10
2231 2406 7.066525 ACAAAACAAGAATTCGTCAGGTCTAAA 59.933 33.333 0.00 0.00 0.00 1.85
2232 2407 7.562454 AAACAAGAATTCGTCAGGTCTAAAA 57.438 32.000 0.00 0.00 0.00 1.52
2233 2408 7.562454 AACAAGAATTCGTCAGGTCTAAAAA 57.438 32.000 0.00 0.00 0.00 1.94
2249 2424 2.723124 AAAAATGTCCGCGCATTTCT 57.277 40.000 20.15 8.28 45.17 2.52
2250 2425 3.840890 AAAAATGTCCGCGCATTTCTA 57.159 38.095 20.15 0.00 45.17 2.10
2251 2426 3.840890 AAAATGTCCGCGCATTTCTAA 57.159 38.095 20.15 0.00 45.17 2.10
2252 2427 3.840890 AAATGTCCGCGCATTTCTAAA 57.159 38.095 15.97 0.00 43.23 1.85
2253 2428 3.840890 AATGTCCGCGCATTTCTAAAA 57.159 38.095 8.75 0.00 35.76 1.52
2254 2429 4.370364 AATGTCCGCGCATTTCTAAAAT 57.630 36.364 8.75 0.00 35.76 1.82
2255 2430 3.840890 TGTCCGCGCATTTCTAAAATT 57.159 38.095 8.75 0.00 0.00 1.82
2256 2431 3.497118 TGTCCGCGCATTTCTAAAATTG 58.503 40.909 8.75 0.00 0.00 2.32
2257 2432 3.057876 TGTCCGCGCATTTCTAAAATTGT 60.058 39.130 8.75 0.00 0.00 2.71
2258 2433 3.300590 GTCCGCGCATTTCTAAAATTGTG 59.699 43.478 8.75 0.00 32.19 3.33
2259 2434 2.027926 CCGCGCATTTCTAAAATTGTGC 59.972 45.455 8.75 7.96 43.62 4.57
2260 2435 2.660715 CGCGCATTTCTAAAATTGTGCA 59.339 40.909 8.75 0.00 45.65 4.57
2261 2436 3.241426 CGCGCATTTCTAAAATTGTGCAG 60.241 43.478 8.75 7.30 45.65 4.41
2262 2437 3.919804 GCGCATTTCTAAAATTGTGCAGA 59.080 39.130 0.30 0.00 45.13 4.26
2263 2438 4.385447 GCGCATTTCTAAAATTGTGCAGAA 59.615 37.500 0.30 0.00 45.13 3.02
2264 2439 5.443693 GCGCATTTCTAAAATTGTGCAGAAG 60.444 40.000 0.30 0.00 45.13 2.85
2265 2440 5.630680 CGCATTTCTAAAATTGTGCAGAAGT 59.369 36.000 1.68 0.00 33.09 3.01
2266 2441 6.144402 CGCATTTCTAAAATTGTGCAGAAGTT 59.856 34.615 3.15 3.15 33.09 2.66
2267 2442 7.325821 CGCATTTCTAAAATTGTGCAGAAGTTA 59.674 33.333 9.82 6.10 33.09 2.24
2268 2443 8.977505 GCATTTCTAAAATTGTGCAGAAGTTAA 58.022 29.630 9.82 1.23 33.09 2.01
2289 2464 4.584327 AAAAACAAATCCTTCGGACAGG 57.416 40.909 0.00 1.26 32.98 4.00
2290 2465 1.534729 AACAAATCCTTCGGACAGGC 58.465 50.000 2.50 0.00 32.98 4.85
2291 2466 0.693049 ACAAATCCTTCGGACAGGCT 59.307 50.000 0.00 0.00 32.98 4.58
2292 2467 1.089920 CAAATCCTTCGGACAGGCTG 58.910 55.000 14.16 14.16 32.98 4.85
2293 2468 0.678048 AAATCCTTCGGACAGGCTGC 60.678 55.000 15.89 7.42 32.98 5.25
2294 2469 2.859273 AATCCTTCGGACAGGCTGCG 62.859 60.000 15.89 11.42 32.98 5.18
2295 2470 4.069232 CCTTCGGACAGGCTGCGA 62.069 66.667 15.89 13.79 41.61 5.10
2297 2472 2.662596 TTCGGACAGGCTGCGAAT 59.337 55.556 20.92 0.55 46.58 3.34
2298 2473 1.003839 TTCGGACAGGCTGCGAATT 60.004 52.632 20.92 0.17 46.58 2.17
2299 2474 1.298157 TTCGGACAGGCTGCGAATTG 61.298 55.000 20.92 4.99 46.58 2.32
2300 2475 1.741401 CGGACAGGCTGCGAATTGA 60.741 57.895 15.89 0.00 35.25 2.57
2303 2478 1.160137 GACAGGCTGCGAATTGAGTT 58.840 50.000 15.89 0.00 0.00 3.01
2318 2493 2.126424 GTTCCTCGCGTCGCTCTT 60.126 61.111 16.36 0.00 0.00 2.85
2376 2558 0.266152 CCCTCCTCCTACACCATCCT 59.734 60.000 0.00 0.00 0.00 3.24
2387 2569 2.123077 CCATCCTCTCCCCTCGCT 60.123 66.667 0.00 0.00 0.00 4.93
2486 2669 1.515519 GTAACACGAGATGCGGCGA 60.516 57.895 12.98 0.00 46.49 5.54
2518 2701 4.101448 GCCTGATGTGGCGAGGGT 62.101 66.667 0.00 0.00 43.74 4.34
2662 2845 4.517934 CGGTCTCGGCCTCCCCTA 62.518 72.222 0.00 0.00 0.00 3.53
2790 2974 4.222336 AGATGGAGGTCTTCGATCAGATT 58.778 43.478 9.19 0.00 41.86 2.40
2872 3056 4.623814 CTTCCTGAAGGCATCGCA 57.376 55.556 0.00 0.00 34.87 5.10
2876 3060 2.178890 CCTGAAGGCATCGCAGAGC 61.179 63.158 3.13 0.00 43.63 4.09
2881 3065 0.242017 AAGGCATCGCAGAGCAAAAC 59.758 50.000 0.00 0.00 43.63 2.43
2901 3085 0.767375 TTCAAGGCCACTCTCTGCTT 59.233 50.000 5.01 0.00 0.00 3.91
2960 3144 0.600255 CGGCTCTCTGGTGTCGTTTT 60.600 55.000 0.00 0.00 30.78 2.43
2964 3149 0.395312 TCTCTGGTGTCGTTTTCCCC 59.605 55.000 0.00 0.00 0.00 4.81
3041 3227 2.401766 GGTGGAGCGGTGCTTCATG 61.402 63.158 7.84 0.00 46.58 3.07
3042 3228 2.747460 TGGAGCGGTGCTTCATGC 60.747 61.111 7.84 0.00 39.52 4.06
3043 3229 2.437359 GGAGCGGTGCTTCATGCT 60.437 61.111 0.00 0.00 39.88 3.79
3044 3230 1.153369 GGAGCGGTGCTTCATGCTA 60.153 57.895 0.00 0.00 39.88 3.49
3045 3231 1.432270 GGAGCGGTGCTTCATGCTAC 61.432 60.000 0.00 0.00 39.88 3.58
3046 3232 1.432270 GAGCGGTGCTTCATGCTACC 61.432 60.000 0.00 0.00 39.88 3.18
3047 3233 1.450312 GCGGTGCTTCATGCTACCT 60.450 57.895 0.00 0.00 43.37 3.08
3048 3234 1.432270 GCGGTGCTTCATGCTACCTC 61.432 60.000 0.00 0.00 43.37 3.85
3049 3235 0.176680 CGGTGCTTCATGCTACCTCT 59.823 55.000 0.00 0.00 43.37 3.69
3050 3236 1.406069 CGGTGCTTCATGCTACCTCTT 60.406 52.381 0.00 0.00 43.37 2.85
3051 3237 2.012673 GGTGCTTCATGCTACCTCTTG 58.987 52.381 0.00 0.00 43.37 3.02
3052 3238 2.355108 GGTGCTTCATGCTACCTCTTGA 60.355 50.000 0.00 0.00 43.37 3.02
3053 3239 2.935201 GTGCTTCATGCTACCTCTTGAG 59.065 50.000 0.00 0.00 43.37 3.02
3054 3240 1.939255 GCTTCATGCTACCTCTTGAGC 59.061 52.381 0.00 0.00 38.95 4.26
3059 3245 0.036952 TGCTACCTCTTGAGCACTGC 60.037 55.000 0.00 0.00 43.64 4.40
3060 3246 1.080995 GCTACCTCTTGAGCACTGCG 61.081 60.000 0.00 0.00 38.62 5.18
3061 3247 0.244994 CTACCTCTTGAGCACTGCGT 59.755 55.000 0.00 0.00 0.00 5.24
3062 3248 0.679505 TACCTCTTGAGCACTGCGTT 59.320 50.000 0.00 0.00 0.00 4.84
3063 3249 0.882042 ACCTCTTGAGCACTGCGTTG 60.882 55.000 0.00 0.00 0.00 4.10
3064 3250 1.572085 CCTCTTGAGCACTGCGTTGG 61.572 60.000 0.00 0.00 0.00 3.77
3065 3251 0.882042 CTCTTGAGCACTGCGTTGGT 60.882 55.000 0.00 0.00 0.00 3.67
3066 3252 0.463654 TCTTGAGCACTGCGTTGGTT 60.464 50.000 0.00 0.00 0.00 3.67
3067 3253 0.381801 CTTGAGCACTGCGTTGGTTT 59.618 50.000 0.00 0.00 0.00 3.27
3068 3254 0.814457 TTGAGCACTGCGTTGGTTTT 59.186 45.000 0.00 0.00 0.00 2.43
3069 3255 0.380378 TGAGCACTGCGTTGGTTTTC 59.620 50.000 0.00 0.00 0.00 2.29
3070 3256 0.317854 GAGCACTGCGTTGGTTTTCC 60.318 55.000 0.00 0.00 41.14 3.13
3071 3257 1.299850 GCACTGCGTTGGTTTTCCC 60.300 57.895 0.00 0.00 39.73 3.97
3072 3258 1.734388 GCACTGCGTTGGTTTTCCCT 61.734 55.000 0.00 0.00 39.73 4.20
3073 3259 0.744281 CACTGCGTTGGTTTTCCCTT 59.256 50.000 0.00 0.00 39.73 3.95
3074 3260 0.744281 ACTGCGTTGGTTTTCCCTTG 59.256 50.000 0.00 0.00 39.73 3.61
3075 3261 1.028905 CTGCGTTGGTTTTCCCTTGA 58.971 50.000 0.00 0.00 39.73 3.02
3076 3262 1.407258 CTGCGTTGGTTTTCCCTTGAA 59.593 47.619 0.00 0.00 39.73 2.69
3077 3263 1.407258 TGCGTTGGTTTTCCCTTGAAG 59.593 47.619 0.00 0.00 39.73 3.02
3078 3264 1.679153 GCGTTGGTTTTCCCTTGAAGA 59.321 47.619 0.00 0.00 39.73 2.87
3079 3265 2.287608 GCGTTGGTTTTCCCTTGAAGAG 60.288 50.000 0.00 0.00 39.73 2.85
3080 3266 2.293399 CGTTGGTTTTCCCTTGAAGAGG 59.707 50.000 0.00 0.00 45.86 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.249489 GATTCCCGACGGATGGAGTG 60.249 60.000 17.49 0.00 38.24 3.51
61 62 1.473677 CCATGCGTCATTTGTGTGGAT 59.526 47.619 0.00 0.00 0.00 3.41
67 68 1.016627 CGGATCCATGCGTCATTTGT 58.983 50.000 13.41 0.00 36.84 2.83
288 303 0.631753 AGAATGGGACTCCTCCTCGA 59.368 55.000 0.00 0.00 36.68 4.04
294 309 1.280421 GCACTGAAGAATGGGACTCCT 59.720 52.381 0.00 0.00 0.00 3.69
301 316 2.787473 TACTGGGCACTGAAGAATGG 57.213 50.000 0.00 0.00 0.00 3.16
325 340 4.320456 CGGCGCCCAGGCTGATAT 62.320 66.667 23.46 0.00 41.96 1.63
462 478 0.896940 TACGGGACTCAAGGCTTCGT 60.897 55.000 12.90 12.90 0.00 3.85
466 482 1.597461 GCTTACGGGACTCAAGGCT 59.403 57.895 0.00 0.00 0.00 4.58
481 497 0.032678 CATGAGATACGAGCCGGCTT 59.967 55.000 33.34 19.18 0.00 4.35
493 509 1.062488 GGTAGGGTGGGGCATGAGAT 61.062 60.000 0.00 0.00 0.00 2.75
496 512 1.230149 AAGGTAGGGTGGGGCATGA 60.230 57.895 0.00 0.00 0.00 3.07
529 545 1.446907 CTGCGCTCCTCAGAATGTTT 58.553 50.000 9.73 0.00 37.40 2.83
574 590 2.737376 GTTTCGCTCGTCCGGCTT 60.737 61.111 0.00 0.00 0.00 4.35
694 719 1.062587 CGAACTTGGCAATTCTAGCGG 59.937 52.381 0.00 0.00 0.00 5.52
695 720 1.062587 CCGAACTTGGCAATTCTAGCG 59.937 52.381 0.00 0.00 0.00 4.26
696 721 2.832672 CCGAACTTGGCAATTCTAGC 57.167 50.000 0.00 0.00 0.00 3.42
706 731 1.429148 GCATCTACGGCCGAACTTGG 61.429 60.000 35.90 17.06 0.00 3.61
707 732 0.460284 AGCATCTACGGCCGAACTTG 60.460 55.000 35.90 23.16 0.00 3.16
708 733 0.249398 AAGCATCTACGGCCGAACTT 59.751 50.000 35.90 20.57 0.00 2.66
709 734 0.249398 AAAGCATCTACGGCCGAACT 59.751 50.000 35.90 12.99 0.00 3.01
710 735 1.084289 AAAAGCATCTACGGCCGAAC 58.916 50.000 35.90 13.68 0.00 3.95
711 736 1.735571 GAAAAAGCATCTACGGCCGAA 59.264 47.619 35.90 17.44 0.00 4.30
712 737 1.338294 TGAAAAAGCATCTACGGCCGA 60.338 47.619 35.90 14.96 0.00 5.54
713 738 1.083489 TGAAAAAGCATCTACGGCCG 58.917 50.000 26.86 26.86 0.00 6.13
714 739 2.488153 ACTTGAAAAAGCATCTACGGCC 59.512 45.455 0.00 0.00 0.00 6.13
715 740 3.831715 ACTTGAAAAAGCATCTACGGC 57.168 42.857 0.00 0.00 0.00 5.68
716 741 5.795441 GCTAAACTTGAAAAAGCATCTACGG 59.205 40.000 0.00 0.00 33.38 4.02
717 742 6.603095 AGCTAAACTTGAAAAAGCATCTACG 58.397 36.000 0.00 0.00 35.63 3.51
718 743 9.893305 TTAAGCTAAACTTGAAAAAGCATCTAC 57.107 29.630 0.00 0.00 39.58 2.59
720 745 9.631452 GATTAAGCTAAACTTGAAAAAGCATCT 57.369 29.630 0.00 0.00 39.58 2.90
721 746 8.578769 CGATTAAGCTAAACTTGAAAAAGCATC 58.421 33.333 0.00 0.00 39.58 3.91
722 747 8.296713 TCGATTAAGCTAAACTTGAAAAAGCAT 58.703 29.630 0.00 0.00 39.58 3.79
723 748 7.644490 TCGATTAAGCTAAACTTGAAAAAGCA 58.356 30.769 0.00 0.00 39.58 3.91
724 749 8.675040 ATCGATTAAGCTAAACTTGAAAAAGC 57.325 30.769 0.00 0.00 39.58 3.51
725 750 9.825972 TGATCGATTAAGCTAAACTTGAAAAAG 57.174 29.630 0.00 0.00 39.58 2.27
730 755 9.161629 TCATTTGATCGATTAAGCTAAACTTGA 57.838 29.630 0.00 0.00 39.58 3.02
735 760 7.276878 TCACGTCATTTGATCGATTAAGCTAAA 59.723 33.333 0.00 0.00 0.00 1.85
813 841 1.202475 AGTTGCCGCCGTTTGATTTTT 60.202 42.857 0.00 0.00 0.00 1.94
814 842 0.387565 AGTTGCCGCCGTTTGATTTT 59.612 45.000 0.00 0.00 0.00 1.82
840 868 3.404141 GAGACGAGACGAGGCTGCC 62.404 68.421 11.65 11.65 0.00 4.85
871 909 5.067283 TGTTCAAACCTGGCTACTTCTTTTC 59.933 40.000 0.00 0.00 0.00 2.29
1954 2129 5.227805 CGTTGATTGTACTATTTGCATGCAC 59.772 40.000 22.58 7.64 0.00 4.57
1964 2139 4.115516 CTGCTGCTCGTTGATTGTACTAT 58.884 43.478 0.00 0.00 0.00 2.12
1977 2152 2.007549 CAGAATGCTCTGCTGCTCG 58.992 57.895 0.00 0.00 42.66 5.03
2012 2187 3.146618 ACAACTTCGAGGTAGCATACG 57.853 47.619 0.00 0.00 44.28 3.06
2017 2192 2.417933 TCGTCTACAACTTCGAGGTAGC 59.582 50.000 0.00 1.60 35.58 3.58
2018 2193 4.675190 TTCGTCTACAACTTCGAGGTAG 57.325 45.455 0.00 5.10 36.65 3.18
2019 2194 5.009010 AGTTTTCGTCTACAACTTCGAGGTA 59.991 40.000 0.00 0.00 33.98 3.08
2020 2195 3.996150 TTTCGTCTACAACTTCGAGGT 57.004 42.857 0.00 0.00 33.98 3.85
2021 2196 4.296690 AGTTTTCGTCTACAACTTCGAGG 58.703 43.478 0.00 0.00 33.98 4.63
2022 2197 6.981379 TTAGTTTTCGTCTACAACTTCGAG 57.019 37.500 0.00 0.00 32.88 4.04
2023 2198 7.648908 TGATTTAGTTTTCGTCTACAACTTCGA 59.351 33.333 0.00 0.00 32.88 3.71
2024 2199 7.780313 TGATTTAGTTTTCGTCTACAACTTCG 58.220 34.615 0.00 0.00 32.88 3.79
2025 2200 9.925268 TTTGATTTAGTTTTCGTCTACAACTTC 57.075 29.630 0.00 0.00 32.88 3.01
2028 2203 9.326339 GGATTTGATTTAGTTTTCGTCTACAAC 57.674 33.333 0.00 0.00 0.00 3.32
2029 2204 9.280174 AGGATTTGATTTAGTTTTCGTCTACAA 57.720 29.630 0.00 0.00 0.00 2.41
2030 2205 8.717821 CAGGATTTGATTTAGTTTTCGTCTACA 58.282 33.333 0.00 0.00 0.00 2.74
2031 2206 8.932791 TCAGGATTTGATTTAGTTTTCGTCTAC 58.067 33.333 0.00 0.00 0.00 2.59
2032 2207 9.496873 TTCAGGATTTGATTTAGTTTTCGTCTA 57.503 29.630 0.00 0.00 35.27 2.59
2033 2208 7.979444 TCAGGATTTGATTTAGTTTTCGTCT 57.021 32.000 0.00 0.00 0.00 4.18
2034 2209 8.290325 AGTTCAGGATTTGATTTAGTTTTCGTC 58.710 33.333 0.00 0.00 35.27 4.20
2035 2210 8.166422 AGTTCAGGATTTGATTTAGTTTTCGT 57.834 30.769 0.00 0.00 35.27 3.85
2036 2211 9.118236 GAAGTTCAGGATTTGATTTAGTTTTCG 57.882 33.333 0.00 0.00 35.27 3.46
2037 2212 9.118236 CGAAGTTCAGGATTTGATTTAGTTTTC 57.882 33.333 3.32 0.00 35.27 2.29
2038 2213 8.846211 TCGAAGTTCAGGATTTGATTTAGTTTT 58.154 29.630 3.32 0.00 35.27 2.43
2039 2214 8.391075 TCGAAGTTCAGGATTTGATTTAGTTT 57.609 30.769 3.32 0.00 35.27 2.66
2040 2215 7.979444 TCGAAGTTCAGGATTTGATTTAGTT 57.021 32.000 3.32 0.00 35.27 2.24
2041 2216 7.979444 TTCGAAGTTCAGGATTTGATTTAGT 57.021 32.000 3.32 0.00 35.27 2.24
2042 2217 9.495754 GAATTCGAAGTTCAGGATTTGATTTAG 57.504 33.333 3.35 0.00 35.27 1.85
2043 2218 8.458843 GGAATTCGAAGTTCAGGATTTGATTTA 58.541 33.333 3.35 0.00 35.27 1.40
2044 2219 7.315890 GGAATTCGAAGTTCAGGATTTGATTT 58.684 34.615 3.35 0.00 35.27 2.17
2045 2220 6.403636 CGGAATTCGAAGTTCAGGATTTGATT 60.404 38.462 4.56 0.00 42.43 2.57
2046 2221 5.065218 CGGAATTCGAAGTTCAGGATTTGAT 59.935 40.000 4.56 0.00 42.43 2.57
2047 2222 4.391830 CGGAATTCGAAGTTCAGGATTTGA 59.608 41.667 4.56 0.00 42.43 2.69
2048 2223 4.437390 CCGGAATTCGAAGTTCAGGATTTG 60.437 45.833 22.50 1.30 41.57 2.32
2049 2224 3.689649 CCGGAATTCGAAGTTCAGGATTT 59.310 43.478 22.50 4.64 41.57 2.17
2050 2225 3.055385 TCCGGAATTCGAAGTTCAGGATT 60.055 43.478 24.06 6.97 42.42 3.01
2051 2226 2.500098 TCCGGAATTCGAAGTTCAGGAT 59.500 45.455 24.06 0.00 42.42 3.24
2052 2227 1.897133 TCCGGAATTCGAAGTTCAGGA 59.103 47.619 24.06 24.06 44.16 3.86
2053 2228 2.380084 TCCGGAATTCGAAGTTCAGG 57.620 50.000 21.68 21.68 40.76 3.86
2054 2229 4.946784 ATTTCCGGAATTCGAAGTTCAG 57.053 40.909 19.62 8.57 42.43 3.02
2055 2230 4.757657 TCAATTTCCGGAATTCGAAGTTCA 59.242 37.500 19.62 0.00 42.43 3.18
2056 2231 5.086727 GTCAATTTCCGGAATTCGAAGTTC 58.913 41.667 19.62 0.00 42.43 3.01
2057 2232 4.517453 TGTCAATTTCCGGAATTCGAAGTT 59.483 37.500 19.62 0.00 42.43 2.66
2058 2233 4.069304 TGTCAATTTCCGGAATTCGAAGT 58.931 39.130 19.62 0.00 42.43 3.01
2059 2234 4.154195 ACTGTCAATTTCCGGAATTCGAAG 59.846 41.667 19.62 13.69 42.43 3.79
2060 2235 4.069304 ACTGTCAATTTCCGGAATTCGAA 58.931 39.130 19.62 2.17 42.43 3.71
2061 2236 3.670625 ACTGTCAATTTCCGGAATTCGA 58.329 40.909 19.62 11.59 42.43 3.71
2062 2237 4.154195 AGAACTGTCAATTTCCGGAATTCG 59.846 41.667 19.62 9.27 35.79 3.34
2063 2238 5.181245 TCAGAACTGTCAATTTCCGGAATTC 59.819 40.000 19.62 15.47 35.79 2.17
2064 2239 5.070001 TCAGAACTGTCAATTTCCGGAATT 58.930 37.500 19.62 12.19 38.49 2.17
2065 2240 4.651778 TCAGAACTGTCAATTTCCGGAAT 58.348 39.130 19.62 0.00 0.00 3.01
2066 2241 4.079980 TCAGAACTGTCAATTTCCGGAA 57.920 40.909 14.35 14.35 0.00 4.30
2067 2242 3.762407 TCAGAACTGTCAATTTCCGGA 57.238 42.857 0.00 0.00 0.00 5.14
2068 2243 3.815401 AGTTCAGAACTGTCAATTTCCGG 59.185 43.478 15.41 0.00 41.01 5.14
2069 2244 5.207768 CAAGTTCAGAACTGTCAATTTCCG 58.792 41.667 16.85 0.00 41.91 4.30
2070 2245 6.136541 ACAAGTTCAGAACTGTCAATTTCC 57.863 37.500 16.85 0.00 41.91 3.13
2071 2246 9.736023 AATTACAAGTTCAGAACTGTCAATTTC 57.264 29.630 16.85 0.00 41.91 2.17
2073 2248 9.520204 CAAATTACAAGTTCAGAACTGTCAATT 57.480 29.630 16.85 16.58 41.91 2.32
2074 2249 8.137437 CCAAATTACAAGTTCAGAACTGTCAAT 58.863 33.333 16.85 12.24 41.91 2.57
2075 2250 7.416213 CCCAAATTACAAGTTCAGAACTGTCAA 60.416 37.037 16.85 10.62 41.91 3.18
2076 2251 6.039270 CCCAAATTACAAGTTCAGAACTGTCA 59.961 38.462 16.85 8.88 41.91 3.58
2077 2252 6.438763 CCCAAATTACAAGTTCAGAACTGTC 58.561 40.000 16.85 0.00 41.91 3.51
2078 2253 5.221244 GCCCAAATTACAAGTTCAGAACTGT 60.221 40.000 16.85 17.11 41.91 3.55
2079 2254 5.222631 GCCCAAATTACAAGTTCAGAACTG 58.777 41.667 16.85 12.66 41.91 3.16
2080 2255 4.280929 GGCCCAAATTACAAGTTCAGAACT 59.719 41.667 10.27 10.27 45.46 3.01
2081 2256 4.280929 AGGCCCAAATTACAAGTTCAGAAC 59.719 41.667 5.00 5.00 0.00 3.01
2082 2257 4.479158 AGGCCCAAATTACAAGTTCAGAA 58.521 39.130 0.00 0.00 0.00 3.02
2083 2258 4.112634 AGGCCCAAATTACAAGTTCAGA 57.887 40.909 0.00 0.00 0.00 3.27
2084 2259 6.530019 AATAGGCCCAAATTACAAGTTCAG 57.470 37.500 0.00 0.00 0.00 3.02
2085 2260 6.926630 AAATAGGCCCAAATTACAAGTTCA 57.073 33.333 0.00 0.00 0.00 3.18
2086 2261 6.593770 CCAAAATAGGCCCAAATTACAAGTTC 59.406 38.462 0.00 0.00 0.00 3.01
2087 2262 6.271159 TCCAAAATAGGCCCAAATTACAAGTT 59.729 34.615 0.00 0.00 0.00 2.66
2088 2263 5.782845 TCCAAAATAGGCCCAAATTACAAGT 59.217 36.000 0.00 0.00 0.00 3.16
2089 2264 6.106003 GTCCAAAATAGGCCCAAATTACAAG 58.894 40.000 0.00 0.00 0.00 3.16
2090 2265 5.046231 GGTCCAAAATAGGCCCAAATTACAA 60.046 40.000 0.00 0.00 0.00 2.41
2091 2266 4.468153 GGTCCAAAATAGGCCCAAATTACA 59.532 41.667 0.00 0.00 0.00 2.41
2092 2267 4.440940 CGGTCCAAAATAGGCCCAAATTAC 60.441 45.833 0.00 0.00 0.00 1.89
2093 2268 3.702045 CGGTCCAAAATAGGCCCAAATTA 59.298 43.478 0.00 0.00 0.00 1.40
2094 2269 2.499693 CGGTCCAAAATAGGCCCAAATT 59.500 45.455 0.00 0.00 0.00 1.82
2095 2270 2.107366 CGGTCCAAAATAGGCCCAAAT 58.893 47.619 0.00 0.00 0.00 2.32
2096 2271 1.203075 ACGGTCCAAAATAGGCCCAAA 60.203 47.619 0.00 0.00 0.00 3.28
2097 2272 0.406361 ACGGTCCAAAATAGGCCCAA 59.594 50.000 0.00 0.00 0.00 4.12
2098 2273 1.210967 CTACGGTCCAAAATAGGCCCA 59.789 52.381 0.00 0.00 0.00 5.36
2099 2274 1.487558 TCTACGGTCCAAAATAGGCCC 59.512 52.381 0.00 0.00 0.00 5.80
2100 2275 2.558378 GTCTACGGTCCAAAATAGGCC 58.442 52.381 0.00 0.00 0.00 5.19
2101 2276 2.169978 AGGTCTACGGTCCAAAATAGGC 59.830 50.000 0.00 0.00 0.00 3.93
2102 2277 5.803237 ATAGGTCTACGGTCCAAAATAGG 57.197 43.478 0.00 0.00 0.00 2.57
2103 2278 6.482308 CCAAATAGGTCTACGGTCCAAAATAG 59.518 42.308 0.00 0.00 0.00 1.73
2104 2279 6.350906 CCAAATAGGTCTACGGTCCAAAATA 58.649 40.000 0.00 0.00 0.00 1.40
2105 2280 5.190677 CCAAATAGGTCTACGGTCCAAAAT 58.809 41.667 0.00 0.00 0.00 1.82
2106 2281 4.581868 CCAAATAGGTCTACGGTCCAAAA 58.418 43.478 0.00 0.00 0.00 2.44
2107 2282 3.620472 GCCAAATAGGTCTACGGTCCAAA 60.620 47.826 0.00 0.00 40.61 3.28
2108 2283 2.093341 GCCAAATAGGTCTACGGTCCAA 60.093 50.000 0.00 0.00 40.61 3.53
2109 2284 1.483415 GCCAAATAGGTCTACGGTCCA 59.517 52.381 0.00 0.00 40.61 4.02
2110 2285 1.202615 GGCCAAATAGGTCTACGGTCC 60.203 57.143 0.00 0.00 39.61 4.46
2111 2286 1.202615 GGGCCAAATAGGTCTACGGTC 60.203 57.143 4.39 0.00 43.45 4.79
2112 2287 0.835276 GGGCCAAATAGGTCTACGGT 59.165 55.000 4.39 0.00 43.45 4.83
2113 2288 0.834612 TGGGCCAAATAGGTCTACGG 59.165 55.000 2.13 0.00 43.45 4.02
2114 2289 2.878406 CAATGGGCCAAATAGGTCTACG 59.122 50.000 11.89 0.00 43.45 3.51
2115 2290 3.222603 CCAATGGGCCAAATAGGTCTAC 58.777 50.000 11.89 0.00 43.45 2.59
2116 2291 2.176798 CCCAATGGGCCAAATAGGTCTA 59.823 50.000 11.89 0.00 43.45 2.59
2117 2292 1.062962 CCCAATGGGCCAAATAGGTCT 60.063 52.381 11.89 0.00 43.45 3.85
2118 2293 1.063266 TCCCAATGGGCCAAATAGGTC 60.063 52.381 14.88 0.00 43.94 3.85
2119 2294 1.014804 TCCCAATGGGCCAAATAGGT 58.985 50.000 14.88 0.00 43.94 3.08
2120 2295 2.173126 TTCCCAATGGGCCAAATAGG 57.827 50.000 14.88 9.75 43.94 2.57
2121 2296 4.482990 ACTATTCCCAATGGGCCAAATAG 58.517 43.478 25.06 25.06 43.94 1.73
2122 2297 4.551215 ACTATTCCCAATGGGCCAAATA 57.449 40.909 14.88 11.65 43.94 1.40
2123 2298 3.419732 ACTATTCCCAATGGGCCAAAT 57.580 42.857 14.88 11.08 43.94 2.32
2124 2299 2.938428 ACTATTCCCAATGGGCCAAA 57.062 45.000 14.88 3.00 43.94 3.28
2125 2300 5.671463 TTATACTATTCCCAATGGGCCAA 57.329 39.130 14.88 3.85 43.94 4.52
2126 2301 5.281506 GGATTATACTATTCCCAATGGGCCA 60.282 44.000 14.88 9.61 43.94 5.36
2127 2302 5.201243 GGATTATACTATTCCCAATGGGCC 58.799 45.833 14.88 0.00 43.94 5.80
2128 2303 5.201243 GGGATTATACTATTCCCAATGGGC 58.799 45.833 14.88 0.00 44.24 5.36
2129 2304 5.190925 TCGGGATTATACTATTCCCAATGGG 59.809 44.000 13.28 13.28 44.79 4.00
2130 2305 6.113411 GTCGGGATTATACTATTCCCAATGG 58.887 44.000 7.91 0.00 44.79 3.16
2131 2306 6.113411 GGTCGGGATTATACTATTCCCAATG 58.887 44.000 7.91 0.00 44.79 2.82
2132 2307 5.105064 CGGTCGGGATTATACTATTCCCAAT 60.105 44.000 7.91 0.00 44.79 3.16
2133 2308 4.221262 CGGTCGGGATTATACTATTCCCAA 59.779 45.833 7.91 0.00 44.79 4.12
2134 2309 3.765511 CGGTCGGGATTATACTATTCCCA 59.234 47.826 7.91 0.00 44.79 4.37
2135 2310 3.131755 CCGGTCGGGATTATACTATTCCC 59.868 52.174 0.74 0.00 42.37 3.97
2136 2311 4.382345 CCGGTCGGGATTATACTATTCC 57.618 50.000 0.74 0.00 38.47 3.01
2150 2325 1.111116 TAGCAGGTTATCCCGGTCGG 61.111 60.000 0.00 1.86 38.74 4.79
2151 2326 0.031721 GTAGCAGGTTATCCCGGTCG 59.968 60.000 0.00 0.00 38.74 4.79
2152 2327 1.340568 GAGTAGCAGGTTATCCCGGTC 59.659 57.143 0.00 0.00 38.74 4.79
2153 2328 1.063114 AGAGTAGCAGGTTATCCCGGT 60.063 52.381 0.00 0.00 38.74 5.28
2154 2329 1.614413 GAGAGTAGCAGGTTATCCCGG 59.386 57.143 0.00 0.00 38.74 5.73
2155 2330 2.034812 GTGAGAGTAGCAGGTTATCCCG 59.965 54.545 0.00 0.00 38.74 5.14
2156 2331 3.031736 TGTGAGAGTAGCAGGTTATCCC 58.968 50.000 0.00 0.00 0.00 3.85
2157 2332 3.954904 TCTGTGAGAGTAGCAGGTTATCC 59.045 47.826 0.00 0.00 0.00 2.59
2158 2333 4.399618 TGTCTGTGAGAGTAGCAGGTTATC 59.600 45.833 0.00 0.00 0.00 1.75
2159 2334 4.344978 TGTCTGTGAGAGTAGCAGGTTAT 58.655 43.478 0.00 0.00 0.00 1.89
2160 2335 3.763057 TGTCTGTGAGAGTAGCAGGTTA 58.237 45.455 0.00 0.00 0.00 2.85
2161 2336 2.598565 TGTCTGTGAGAGTAGCAGGTT 58.401 47.619 0.00 0.00 0.00 3.50
2162 2337 2.294449 TGTCTGTGAGAGTAGCAGGT 57.706 50.000 0.00 0.00 0.00 4.00
2163 2338 2.822561 TCTTGTCTGTGAGAGTAGCAGG 59.177 50.000 0.00 0.00 0.00 4.85
2164 2339 4.511617 TTCTTGTCTGTGAGAGTAGCAG 57.488 45.455 0.00 0.00 0.00 4.24
2165 2340 5.474578 AATTCTTGTCTGTGAGAGTAGCA 57.525 39.130 0.00 0.00 0.00 3.49
2166 2341 5.121454 CCAAATTCTTGTCTGTGAGAGTAGC 59.879 44.000 0.00 0.00 0.00 3.58
2167 2342 5.121454 GCCAAATTCTTGTCTGTGAGAGTAG 59.879 44.000 0.00 0.00 0.00 2.57
2168 2343 4.997395 GCCAAATTCTTGTCTGTGAGAGTA 59.003 41.667 0.00 0.00 0.00 2.59
2169 2344 3.817647 GCCAAATTCTTGTCTGTGAGAGT 59.182 43.478 0.00 0.00 0.00 3.24
2170 2345 3.817084 TGCCAAATTCTTGTCTGTGAGAG 59.183 43.478 0.00 0.00 0.00 3.20
2171 2346 3.819368 TGCCAAATTCTTGTCTGTGAGA 58.181 40.909 0.00 0.00 0.00 3.27
2172 2347 4.482386 CATGCCAAATTCTTGTCTGTGAG 58.518 43.478 0.00 0.00 0.00 3.51
2173 2348 3.256383 CCATGCCAAATTCTTGTCTGTGA 59.744 43.478 0.00 0.00 0.00 3.58
2174 2349 3.581755 CCATGCCAAATTCTTGTCTGTG 58.418 45.455 0.00 0.00 0.00 3.66
2175 2350 2.028748 GCCATGCCAAATTCTTGTCTGT 60.029 45.455 0.00 0.00 0.00 3.41
2176 2351 2.232941 AGCCATGCCAAATTCTTGTCTG 59.767 45.455 0.00 0.00 0.00 3.51
2177 2352 2.494870 GAGCCATGCCAAATTCTTGTCT 59.505 45.455 0.00 0.00 0.00 3.41
2178 2353 2.231964 TGAGCCATGCCAAATTCTTGTC 59.768 45.455 0.00 0.00 0.00 3.18
2179 2354 2.028748 GTGAGCCATGCCAAATTCTTGT 60.029 45.455 0.00 0.00 0.00 3.16
2180 2355 2.232941 AGTGAGCCATGCCAAATTCTTG 59.767 45.455 0.00 0.00 0.00 3.02
2181 2356 2.532843 AGTGAGCCATGCCAAATTCTT 58.467 42.857 0.00 0.00 0.00 2.52
2182 2357 2.226962 AGTGAGCCATGCCAAATTCT 57.773 45.000 0.00 0.00 0.00 2.40
2183 2358 5.067674 TGTTATAGTGAGCCATGCCAAATTC 59.932 40.000 0.00 0.00 0.00 2.17
2184 2359 4.955450 TGTTATAGTGAGCCATGCCAAATT 59.045 37.500 0.00 0.00 0.00 1.82
2185 2360 4.535781 TGTTATAGTGAGCCATGCCAAAT 58.464 39.130 0.00 0.00 0.00 2.32
2186 2361 3.961849 TGTTATAGTGAGCCATGCCAAA 58.038 40.909 0.00 0.00 0.00 3.28
2187 2362 3.643199 TGTTATAGTGAGCCATGCCAA 57.357 42.857 0.00 0.00 0.00 4.52
2188 2363 3.643199 TTGTTATAGTGAGCCATGCCA 57.357 42.857 0.00 0.00 0.00 4.92
2189 2364 4.157656 TGTTTTGTTATAGTGAGCCATGCC 59.842 41.667 0.00 0.00 0.00 4.40
2190 2365 5.309323 TGTTTTGTTATAGTGAGCCATGC 57.691 39.130 0.00 0.00 0.00 4.06
2191 2366 7.144722 TCTTGTTTTGTTATAGTGAGCCATG 57.855 36.000 0.00 0.00 0.00 3.66
2192 2367 7.759489 TTCTTGTTTTGTTATAGTGAGCCAT 57.241 32.000 0.00 0.00 0.00 4.40
2193 2368 7.759489 ATTCTTGTTTTGTTATAGTGAGCCA 57.241 32.000 0.00 0.00 0.00 4.75
2194 2369 7.481798 CGAATTCTTGTTTTGTTATAGTGAGCC 59.518 37.037 3.52 0.00 0.00 4.70
2195 2370 8.015658 ACGAATTCTTGTTTTGTTATAGTGAGC 58.984 33.333 3.52 0.00 0.00 4.26
2196 2371 9.530129 GACGAATTCTTGTTTTGTTATAGTGAG 57.470 33.333 3.52 0.00 0.00 3.51
2197 2372 9.047371 TGACGAATTCTTGTTTTGTTATAGTGA 57.953 29.630 3.52 0.00 0.00 3.41
2198 2373 9.318041 CTGACGAATTCTTGTTTTGTTATAGTG 57.682 33.333 3.52 0.00 0.00 2.74
2199 2374 8.504005 CCTGACGAATTCTTGTTTTGTTATAGT 58.496 33.333 3.52 0.00 0.00 2.12
2200 2375 8.504005 ACCTGACGAATTCTTGTTTTGTTATAG 58.496 33.333 3.52 0.00 0.00 1.31
2201 2376 8.385898 ACCTGACGAATTCTTGTTTTGTTATA 57.614 30.769 3.52 0.00 0.00 0.98
2202 2377 7.228706 AGACCTGACGAATTCTTGTTTTGTTAT 59.771 33.333 3.52 0.00 0.00 1.89
2203 2378 6.540914 AGACCTGACGAATTCTTGTTTTGTTA 59.459 34.615 3.52 0.00 0.00 2.41
2204 2379 5.357032 AGACCTGACGAATTCTTGTTTTGTT 59.643 36.000 3.52 0.00 0.00 2.83
2205 2380 4.881850 AGACCTGACGAATTCTTGTTTTGT 59.118 37.500 3.52 0.00 0.00 2.83
2206 2381 5.424121 AGACCTGACGAATTCTTGTTTTG 57.576 39.130 3.52 0.00 0.00 2.44
2207 2382 7.562454 TTTAGACCTGACGAATTCTTGTTTT 57.438 32.000 3.52 0.00 0.00 2.43
2208 2383 7.562454 TTTTAGACCTGACGAATTCTTGTTT 57.438 32.000 3.52 0.00 0.00 2.83
2209 2384 7.562454 TTTTTAGACCTGACGAATTCTTGTT 57.438 32.000 3.52 0.00 0.00 2.83
2233 2408 3.840890 TTTTAGAAATGCGCGGACATT 57.159 38.095 8.83 7.23 42.01 2.71
2234 2409 4.104776 CAATTTTAGAAATGCGCGGACAT 58.895 39.130 8.83 0.00 0.00 3.06
2235 2410 3.057876 ACAATTTTAGAAATGCGCGGACA 60.058 39.130 8.83 0.00 0.00 4.02
2236 2411 3.300590 CACAATTTTAGAAATGCGCGGAC 59.699 43.478 8.83 0.00 0.00 4.79
2237 2412 3.497118 CACAATTTTAGAAATGCGCGGA 58.503 40.909 8.83 5.00 0.00 5.54
2238 2413 2.027926 GCACAATTTTAGAAATGCGCGG 59.972 45.455 8.83 0.00 0.00 6.46
2239 2414 2.660715 TGCACAATTTTAGAAATGCGCG 59.339 40.909 0.00 0.00 35.83 6.86
2240 2415 3.919804 TCTGCACAATTTTAGAAATGCGC 59.080 39.130 0.00 0.00 35.83 6.09
2241 2416 5.630680 ACTTCTGCACAATTTTAGAAATGCG 59.369 36.000 0.00 0.00 35.83 4.73
2242 2417 7.412137 AACTTCTGCACAATTTTAGAAATGC 57.588 32.000 0.00 0.00 0.00 3.56
2279 2454 1.021390 AATTCGCAGCCTGTCCGAAG 61.021 55.000 11.72 0.00 43.13 3.79
2280 2455 1.003839 AATTCGCAGCCTGTCCGAA 60.004 52.632 9.12 9.12 43.87 4.30
2281 2456 1.741401 CAATTCGCAGCCTGTCCGA 60.741 57.895 0.00 0.00 0.00 4.55
2282 2457 1.699656 CTCAATTCGCAGCCTGTCCG 61.700 60.000 0.00 0.00 0.00 4.79
2283 2458 0.674895 ACTCAATTCGCAGCCTGTCC 60.675 55.000 0.00 0.00 0.00 4.02
2284 2459 1.129437 GAACTCAATTCGCAGCCTGTC 59.871 52.381 0.00 0.00 0.00 3.51
2285 2460 1.160137 GAACTCAATTCGCAGCCTGT 58.840 50.000 0.00 0.00 0.00 4.00
2286 2461 0.449388 GGAACTCAATTCGCAGCCTG 59.551 55.000 0.00 0.00 38.31 4.85
2287 2462 0.326264 AGGAACTCAATTCGCAGCCT 59.674 50.000 0.00 0.00 38.31 4.58
2288 2463 2.859992 AGGAACTCAATTCGCAGCC 58.140 52.632 0.00 0.00 38.31 4.85
2303 2478 4.778415 GCAAGAGCGACGCGAGGA 62.778 66.667 15.93 0.00 0.00 3.71
2332 2508 3.633145 TGGGGGCTAGGGTTCCCT 61.633 66.667 15.19 15.19 42.25 4.20
2360 2536 1.218196 GGAGAGGATGGTGTAGGAGGA 59.782 57.143 0.00 0.00 0.00 3.71
2486 2669 1.534235 AGGCAAGACTCCTCCACGT 60.534 57.895 0.00 0.00 0.00 4.49
2489 2672 0.907486 CATCAGGCAAGACTCCTCCA 59.093 55.000 0.00 0.00 0.00 3.86
2492 2675 0.617413 CCACATCAGGCAAGACTCCT 59.383 55.000 0.00 0.00 0.00 3.69
2581 2764 3.646715 CCCGAAGCCAACCCCTCA 61.647 66.667 0.00 0.00 0.00 3.86
2790 2974 2.896685 CCAATAGCAGGTTTTCACCCAA 59.103 45.455 0.00 0.00 45.63 4.12
2872 3056 1.683385 GTGGCCTTGAAGTTTTGCTCT 59.317 47.619 3.32 0.00 0.00 4.09
2876 3060 3.004106 CAGAGAGTGGCCTTGAAGTTTTG 59.996 47.826 3.32 0.00 0.00 2.44
2881 3065 0.324285 AGCAGAGAGTGGCCTTGAAG 59.676 55.000 3.32 0.00 0.00 3.02
2931 3115 3.838271 GAGAGCCGCCGTCATCCA 61.838 66.667 0.00 0.00 0.00 3.41
2964 3149 0.965439 TCCAAAAATGACGCCCCAAG 59.035 50.000 0.00 0.00 0.00 3.61
3041 3227 1.080995 CGCAGTGCTCAAGAGGTAGC 61.081 60.000 14.33 0.00 39.25 3.58
3042 3228 0.244994 ACGCAGTGCTCAAGAGGTAG 59.755 55.000 14.33 0.00 42.51 3.18
3043 3229 0.679505 AACGCAGTGCTCAAGAGGTA 59.320 50.000 14.33 0.00 45.00 3.08
3044 3230 0.882042 CAACGCAGTGCTCAAGAGGT 60.882 55.000 14.33 0.00 45.00 3.85
3045 3231 1.572085 CCAACGCAGTGCTCAAGAGG 61.572 60.000 14.33 2.70 45.00 3.69
3046 3232 0.882042 ACCAACGCAGTGCTCAAGAG 60.882 55.000 14.33 0.00 45.00 2.85
3047 3233 0.463654 AACCAACGCAGTGCTCAAGA 60.464 50.000 14.33 0.00 45.00 3.02
3048 3234 0.381801 AAACCAACGCAGTGCTCAAG 59.618 50.000 14.33 0.00 45.00 3.02
3049 3235 0.814457 AAAACCAACGCAGTGCTCAA 59.186 45.000 14.33 0.00 45.00 3.02
3050 3236 0.380378 GAAAACCAACGCAGTGCTCA 59.620 50.000 14.33 0.00 45.00 4.26
3051 3237 0.317854 GGAAAACCAACGCAGTGCTC 60.318 55.000 14.33 0.60 45.00 4.26
3052 3238 1.733526 GGAAAACCAACGCAGTGCT 59.266 52.632 14.33 0.00 45.00 4.40
3053 3239 1.299850 GGGAAAACCAACGCAGTGC 60.300 57.895 4.58 4.58 45.00 4.40
3054 3240 0.744281 AAGGGAAAACCAACGCAGTG 59.256 50.000 0.00 0.00 40.90 3.66
3055 3241 0.744281 CAAGGGAAAACCAACGCAGT 59.256 50.000 0.00 0.00 43.89 4.40
3056 3242 1.028905 TCAAGGGAAAACCAACGCAG 58.971 50.000 0.00 0.00 43.89 5.18
3057 3243 1.407258 CTTCAAGGGAAAACCAACGCA 59.593 47.619 0.00 0.00 43.89 5.24
3058 3244 1.679153 TCTTCAAGGGAAAACCAACGC 59.321 47.619 0.00 0.00 43.89 4.84
3059 3245 2.293399 CCTCTTCAAGGGAAAACCAACG 59.707 50.000 0.00 0.00 42.03 4.10
3060 3246 3.562182 TCCTCTTCAAGGGAAAACCAAC 58.438 45.455 0.00 0.00 46.23 3.77
3061 3247 3.963476 TCCTCTTCAAGGGAAAACCAA 57.037 42.857 0.00 0.00 46.23 3.67
3062 3248 3.963476 TTCCTCTTCAAGGGAAAACCA 57.037 42.857 5.19 0.00 46.23 3.67
3063 3249 3.574396 CCTTTCCTCTTCAAGGGAAAACC 59.426 47.826 16.45 0.00 42.49 3.27
3064 3250 4.855715 CCTTTCCTCTTCAAGGGAAAAC 57.144 45.455 16.45 0.00 42.49 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.