Multiple sequence alignment - TraesCS2A01G487800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G487800 chr2A 100.000 2489 0 0 1 2489 722517069 722519557 0.000000e+00 4597.0
1 TraesCS2A01G487800 chr2A 89.474 190 7 5 1637 1819 32974152 32974335 6.930000e-56 228.0
2 TraesCS2A01G487800 chr2B 88.883 1853 97 35 700 2489 710279875 710281681 0.000000e+00 2180.0
3 TraesCS2A01G487800 chr2D 87.581 1844 96 58 700 2486 587695847 587697614 0.000000e+00 2013.0
4 TraesCS2A01G487800 chr2D 83.632 391 59 5 1 387 617956330 617956719 1.820000e-96 363.0
5 TraesCS2A01G487800 chr2D 93.798 129 7 1 578 705 587695686 587695814 2.530000e-45 193.0
6 TraesCS2A01G487800 chr4D 86.437 988 74 21 1477 2422 344373768 344372799 0.000000e+00 1027.0
7 TraesCS2A01G487800 chr4D 84.615 390 55 5 1 387 58274298 58273911 1.400000e-102 383.0
8 TraesCS2A01G487800 chr4D 83.288 365 56 5 1 363 479414176 479414537 5.130000e-87 331.0
9 TraesCS2A01G487800 chr3A 84.035 808 59 32 1477 2238 195452298 195451515 0.000000e+00 713.0
10 TraesCS2A01G487800 chr3A 92.135 178 14 0 2245 2422 195447606 195447429 4.110000e-63 252.0
11 TraesCS2A01G487800 chr6D 87.003 377 46 3 14 387 337847240 337846864 2.960000e-114 422.0
12 TraesCS2A01G487800 chr3D 84.252 381 56 4 14 390 374036025 374036405 3.910000e-98 368.0
13 TraesCS2A01G487800 chr4A 83.289 377 60 3 14 387 153258261 153257885 6.590000e-91 344.0
14 TraesCS2A01G487800 chrUn 84.136 353 52 4 14 363 111021124 111021475 3.070000e-89 339.0
15 TraesCS2A01G487800 chr3B 81.959 388 65 5 1 384 98024110 98023724 8.590000e-85 324.0
16 TraesCS2A01G487800 chr3B 82.228 377 64 3 14 387 13456634 13457010 3.090000e-84 322.0
17 TraesCS2A01G487800 chr1D 92.667 150 11 0 2273 2422 2480365 2480514 1.500000e-52 217.0
18 TraesCS2A01G487800 chr5A 77.863 131 25 4 388 514 670446494 670446364 7.380000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G487800 chr2A 722517069 722519557 2488 False 4597.0 4597 100.0000 1 2489 1 chr2A.!!$F2 2488
1 TraesCS2A01G487800 chr2B 710279875 710281681 1806 False 2180.0 2180 88.8830 700 2489 1 chr2B.!!$F1 1789
2 TraesCS2A01G487800 chr2D 587695686 587697614 1928 False 1103.0 2013 90.6895 578 2486 2 chr2D.!!$F2 1908
3 TraesCS2A01G487800 chr4D 344372799 344373768 969 True 1027.0 1027 86.4370 1477 2422 1 chr4D.!!$R2 945
4 TraesCS2A01G487800 chr3A 195447429 195452298 4869 True 482.5 713 88.0850 1477 2422 2 chr3A.!!$R1 945

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 145 0.033504 GAGCCGACTTGACCTTGTCA 59.966 55.0 0.0 0.0 41.09 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2031 2153 0.03601 CCGTCATTCCTCACAGGCTT 60.036 55.0 0.0 0.0 34.61 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.604735 AGTTCAACGGATATACAAAGCATC 57.395 37.500 0.00 0.00 0.00 3.91
24 25 6.349300 AGTTCAACGGATATACAAAGCATCT 58.651 36.000 0.00 0.00 0.00 2.90
25 26 6.823689 AGTTCAACGGATATACAAAGCATCTT 59.176 34.615 0.00 0.00 0.00 2.40
26 27 6.603237 TCAACGGATATACAAAGCATCTTG 57.397 37.500 0.00 0.00 0.00 3.02
27 28 6.345298 TCAACGGATATACAAAGCATCTTGA 58.655 36.000 0.78 0.00 0.00 3.02
28 29 6.821160 TCAACGGATATACAAAGCATCTTGAA 59.179 34.615 0.78 0.00 0.00 2.69
29 30 6.604735 ACGGATATACAAAGCATCTTGAAC 57.395 37.500 0.78 0.00 0.00 3.18
30 31 6.112734 ACGGATATACAAAGCATCTTGAACA 58.887 36.000 0.78 0.00 0.00 3.18
31 32 6.767902 ACGGATATACAAAGCATCTTGAACAT 59.232 34.615 0.78 0.00 0.00 2.71
32 33 7.931407 ACGGATATACAAAGCATCTTGAACATA 59.069 33.333 0.78 0.00 0.00 2.29
33 34 8.438513 CGGATATACAAAGCATCTTGAACATAG 58.561 37.037 0.78 0.00 0.00 2.23
34 35 9.277783 GGATATACAAAGCATCTTGAACATAGT 57.722 33.333 0.78 0.00 0.00 2.12
60 61 9.936759 TTAAATTACATTGAAATTTCAGGACCC 57.063 29.630 19.64 0.00 37.61 4.46
61 62 5.993748 TTACATTGAAATTTCAGGACCCC 57.006 39.130 19.64 0.00 38.61 4.95
62 63 3.173151 ACATTGAAATTTCAGGACCCCC 58.827 45.455 19.64 0.00 38.61 5.40
63 64 3.172339 CATTGAAATTTCAGGACCCCCA 58.828 45.455 19.64 4.36 38.61 4.96
64 65 2.603075 TGAAATTTCAGGACCCCCAG 57.397 50.000 16.91 0.00 32.50 4.45
65 66 1.077005 TGAAATTTCAGGACCCCCAGG 59.923 52.381 16.91 0.00 34.06 4.45
66 67 0.252239 AAATTTCAGGACCCCCAGGC 60.252 55.000 0.00 0.00 36.11 4.85
67 68 1.442886 AATTTCAGGACCCCCAGGCA 61.443 55.000 0.00 0.00 36.11 4.75
68 69 1.442886 ATTTCAGGACCCCCAGGCAA 61.443 55.000 0.00 0.00 36.11 4.52
69 70 1.442886 TTTCAGGACCCCCAGGCAAT 61.443 55.000 0.00 0.00 36.11 3.56
70 71 1.863155 TTCAGGACCCCCAGGCAATC 61.863 60.000 0.00 0.00 36.11 2.67
71 72 2.204291 AGGACCCCCAGGCAATCA 60.204 61.111 0.00 0.00 36.11 2.57
72 73 2.043953 GGACCCCCAGGCAATCAC 60.044 66.667 0.00 0.00 36.11 3.06
73 74 2.616458 GGACCCCCAGGCAATCACT 61.616 63.158 0.00 0.00 36.11 3.41
74 75 1.279025 GGACCCCCAGGCAATCACTA 61.279 60.000 0.00 0.00 36.11 2.74
75 76 0.846693 GACCCCCAGGCAATCACTAT 59.153 55.000 0.00 0.00 36.11 2.12
76 77 1.215423 GACCCCCAGGCAATCACTATT 59.785 52.381 0.00 0.00 36.11 1.73
77 78 1.063717 ACCCCCAGGCAATCACTATTG 60.064 52.381 0.00 0.00 44.53 1.90
85 86 1.667236 CAATCACTATTGCCGCCAGA 58.333 50.000 0.00 0.00 36.35 3.86
86 87 2.016318 CAATCACTATTGCCGCCAGAA 58.984 47.619 0.00 0.00 36.35 3.02
87 88 1.668419 ATCACTATTGCCGCCAGAAC 58.332 50.000 0.00 0.00 0.00 3.01
88 89 0.739462 TCACTATTGCCGCCAGAACG 60.739 55.000 0.00 0.00 0.00 3.95
89 90 0.739462 CACTATTGCCGCCAGAACGA 60.739 55.000 0.00 0.00 34.06 3.85
90 91 0.460284 ACTATTGCCGCCAGAACGAG 60.460 55.000 0.00 0.00 34.06 4.18
91 92 1.766143 CTATTGCCGCCAGAACGAGC 61.766 60.000 0.00 0.00 34.06 5.03
98 99 4.514577 CCAGAACGAGCCGCCGAT 62.515 66.667 8.04 0.00 0.00 4.18
99 100 3.257561 CAGAACGAGCCGCCGATG 61.258 66.667 8.04 1.59 0.00 3.84
121 122 3.518998 GCTGTCGCCGCTCCTCTA 61.519 66.667 0.00 0.00 0.00 2.43
122 123 2.409651 CTGTCGCCGCTCCTCTAC 59.590 66.667 0.00 0.00 0.00 2.59
123 124 3.127352 CTGTCGCCGCTCCTCTACC 62.127 68.421 0.00 0.00 0.00 3.18
124 125 4.253257 GTCGCCGCTCCTCTACCG 62.253 72.222 0.00 0.00 0.00 4.02
131 132 2.192443 CTCCTCTACCGGAGCCGA 59.808 66.667 9.46 0.00 43.69 5.54
132 133 2.124403 TCCTCTACCGGAGCCGAC 60.124 66.667 9.46 0.00 42.83 4.79
133 134 2.124236 CCTCTACCGGAGCCGACT 60.124 66.667 9.46 0.00 42.83 4.18
134 135 1.753463 CCTCTACCGGAGCCGACTT 60.753 63.158 9.46 0.00 42.83 3.01
135 136 1.433879 CTCTACCGGAGCCGACTTG 59.566 63.158 9.46 0.00 42.83 3.16
136 137 1.001764 TCTACCGGAGCCGACTTGA 60.002 57.895 9.46 0.56 42.83 3.02
137 138 1.139095 CTACCGGAGCCGACTTGAC 59.861 63.158 9.46 0.00 42.83 3.18
138 139 2.280823 CTACCGGAGCCGACTTGACC 62.281 65.000 9.46 0.00 42.83 4.02
139 140 2.776370 TACCGGAGCCGACTTGACCT 62.776 60.000 9.46 0.00 42.83 3.85
140 141 2.657237 CGGAGCCGACTTGACCTT 59.343 61.111 2.00 0.00 42.83 3.50
141 142 1.738099 CGGAGCCGACTTGACCTTG 60.738 63.158 2.00 0.00 42.83 3.61
142 143 1.371558 GGAGCCGACTTGACCTTGT 59.628 57.895 0.00 0.00 0.00 3.16
143 144 0.670854 GGAGCCGACTTGACCTTGTC 60.671 60.000 0.00 0.00 0.00 3.18
144 145 0.033504 GAGCCGACTTGACCTTGTCA 59.966 55.000 0.00 0.00 41.09 3.58
154 155 2.754472 TGACCTTGTCAATGACAGTCG 58.246 47.619 22.31 14.50 43.69 4.18
155 156 2.069273 GACCTTGTCAATGACAGTCGG 58.931 52.381 16.10 18.26 43.69 4.79
156 157 1.270839 ACCTTGTCAATGACAGTCGGG 60.271 52.381 22.85 20.41 43.69 5.14
157 158 1.001974 CCTTGTCAATGACAGTCGGGA 59.998 52.381 16.10 0.00 43.69 5.14
158 159 2.549992 CCTTGTCAATGACAGTCGGGAA 60.550 50.000 16.10 0.00 43.69 3.97
159 160 2.455674 TGTCAATGACAGTCGGGAAG 57.544 50.000 12.63 0.00 37.67 3.46
160 161 1.691976 TGTCAATGACAGTCGGGAAGT 59.308 47.619 12.63 0.00 37.67 3.01
161 162 2.288825 TGTCAATGACAGTCGGGAAGTC 60.289 50.000 12.63 0.00 37.67 3.01
162 163 2.028930 GTCAATGACAGTCGGGAAGTCT 60.029 50.000 8.74 0.00 33.56 3.24
163 164 2.632996 TCAATGACAGTCGGGAAGTCTT 59.367 45.455 0.00 0.00 33.56 3.01
164 165 2.996621 CAATGACAGTCGGGAAGTCTTC 59.003 50.000 3.80 3.80 33.56 2.87
165 166 0.596577 TGACAGTCGGGAAGTCTTCG 59.403 55.000 6.50 0.00 33.56 3.79
166 167 0.597072 GACAGTCGGGAAGTCTTCGT 59.403 55.000 6.50 0.00 0.00 3.85
167 168 0.314302 ACAGTCGGGAAGTCTTCGTG 59.686 55.000 6.50 1.85 0.00 4.35
168 169 1.009389 CAGTCGGGAAGTCTTCGTGC 61.009 60.000 6.50 0.00 0.00 5.34
169 170 1.006571 GTCGGGAAGTCTTCGTGCA 60.007 57.895 6.50 0.00 0.00 4.57
170 171 1.006571 TCGGGAAGTCTTCGTGCAC 60.007 57.895 6.82 6.82 0.00 4.57
171 172 2.372690 CGGGAAGTCTTCGTGCACG 61.373 63.158 32.76 32.76 41.45 5.34
172 173 1.300697 GGGAAGTCTTCGTGCACGT 60.301 57.895 35.74 18.16 40.80 4.49
173 174 1.557443 GGGAAGTCTTCGTGCACGTG 61.557 60.000 35.74 28.05 40.80 4.49
174 175 1.201825 GAAGTCTTCGTGCACGTGC 59.798 57.895 35.74 33.11 40.80 5.34
175 176 2.159272 GAAGTCTTCGTGCACGTGCC 62.159 60.000 35.72 25.12 41.18 5.01
176 177 3.712881 GTCTTCGTGCACGTGCCC 61.713 66.667 35.72 25.39 41.18 5.36
177 178 4.980805 TCTTCGTGCACGTGCCCC 62.981 66.667 35.72 24.77 41.18 5.80
178 179 4.988598 CTTCGTGCACGTGCCCCT 62.989 66.667 35.72 0.00 41.18 4.79
179 180 3.583276 CTTCGTGCACGTGCCCCTA 62.583 63.158 35.72 16.34 41.18 3.53
180 181 3.166490 TTCGTGCACGTGCCCCTAA 62.166 57.895 35.72 21.18 41.18 2.69
181 182 3.118454 CGTGCACGTGCCCCTAAG 61.118 66.667 35.72 16.82 41.18 2.18
182 183 2.746277 GTGCACGTGCCCCTAAGG 60.746 66.667 35.72 0.00 41.18 2.69
207 208 3.699894 CCCTGGAGCTGCAGTCGT 61.700 66.667 30.32 0.00 0.00 4.34
208 209 2.125753 CCTGGAGCTGCAGTCGTC 60.126 66.667 30.32 9.76 0.00 4.20
209 210 2.505777 CTGGAGCTGCAGTCGTCG 60.506 66.667 25.76 0.97 0.00 5.12
210 211 4.724602 TGGAGCTGCAGTCGTCGC 62.725 66.667 16.64 0.00 0.00 5.19
215 216 3.767230 CTGCAGTCGTCGCCGTTG 61.767 66.667 5.25 0.00 35.01 4.10
216 217 4.273257 TGCAGTCGTCGCCGTTGA 62.273 61.111 0.00 0.00 35.01 3.18
217 218 2.809601 GCAGTCGTCGCCGTTGAT 60.810 61.111 0.00 0.00 35.01 2.57
218 219 2.789203 GCAGTCGTCGCCGTTGATC 61.789 63.158 0.00 0.00 35.01 2.92
219 220 2.158959 CAGTCGTCGCCGTTGATCC 61.159 63.158 0.00 0.00 35.01 3.36
220 221 2.884207 GTCGTCGCCGTTGATCCC 60.884 66.667 0.00 0.00 35.01 3.85
221 222 3.066190 TCGTCGCCGTTGATCCCT 61.066 61.111 0.00 0.00 35.01 4.20
222 223 2.125673 CGTCGCCGTTGATCCCTT 60.126 61.111 0.00 0.00 0.00 3.95
223 224 2.452813 CGTCGCCGTTGATCCCTTG 61.453 63.158 0.00 0.00 0.00 3.61
224 225 2.435938 TCGCCGTTGATCCCTTGC 60.436 61.111 0.00 0.00 0.00 4.01
225 226 2.745884 CGCCGTTGATCCCTTGCA 60.746 61.111 0.00 0.00 0.00 4.08
226 227 2.114670 CGCCGTTGATCCCTTGCAT 61.115 57.895 0.00 0.00 0.00 3.96
227 228 0.813610 CGCCGTTGATCCCTTGCATA 60.814 55.000 0.00 0.00 0.00 3.14
228 229 0.947244 GCCGTTGATCCCTTGCATAG 59.053 55.000 0.00 0.00 0.00 2.23
229 230 1.475034 GCCGTTGATCCCTTGCATAGA 60.475 52.381 0.00 0.00 0.00 1.98
230 231 2.917933 CCGTTGATCCCTTGCATAGAA 58.082 47.619 0.00 0.00 0.00 2.10
231 232 2.614057 CCGTTGATCCCTTGCATAGAAC 59.386 50.000 0.00 0.00 0.00 3.01
232 233 3.535561 CGTTGATCCCTTGCATAGAACT 58.464 45.455 0.00 0.00 0.00 3.01
233 234 3.310774 CGTTGATCCCTTGCATAGAACTG 59.689 47.826 0.00 0.00 0.00 3.16
234 235 4.517285 GTTGATCCCTTGCATAGAACTGA 58.483 43.478 0.00 0.00 0.00 3.41
235 236 4.842531 TGATCCCTTGCATAGAACTGAA 57.157 40.909 0.00 0.00 0.00 3.02
236 237 4.774124 TGATCCCTTGCATAGAACTGAAG 58.226 43.478 0.00 0.00 0.00 3.02
237 238 2.991250 TCCCTTGCATAGAACTGAAGC 58.009 47.619 0.00 0.00 0.00 3.86
238 239 2.305635 TCCCTTGCATAGAACTGAAGCA 59.694 45.455 0.00 0.00 0.00 3.91
239 240 2.421424 CCCTTGCATAGAACTGAAGCAC 59.579 50.000 0.00 0.00 34.56 4.40
240 241 2.421424 CCTTGCATAGAACTGAAGCACC 59.579 50.000 0.00 0.00 34.56 5.01
241 242 3.341823 CTTGCATAGAACTGAAGCACCT 58.658 45.455 0.00 0.00 34.56 4.00
242 243 2.703416 TGCATAGAACTGAAGCACCTG 58.297 47.619 0.00 0.00 0.00 4.00
243 244 2.302733 TGCATAGAACTGAAGCACCTGA 59.697 45.455 0.00 0.00 0.00 3.86
244 245 2.675348 GCATAGAACTGAAGCACCTGAC 59.325 50.000 0.00 0.00 0.00 3.51
245 246 3.866066 GCATAGAACTGAAGCACCTGACA 60.866 47.826 0.00 0.00 0.00 3.58
246 247 2.246719 AGAACTGAAGCACCTGACAC 57.753 50.000 0.00 0.00 0.00 3.67
247 248 1.202698 AGAACTGAAGCACCTGACACC 60.203 52.381 0.00 0.00 0.00 4.16
248 249 0.546122 AACTGAAGCACCTGACACCA 59.454 50.000 0.00 0.00 0.00 4.17
249 250 0.546122 ACTGAAGCACCTGACACCAA 59.454 50.000 0.00 0.00 0.00 3.67
250 251 1.064758 ACTGAAGCACCTGACACCAAA 60.065 47.619 0.00 0.00 0.00 3.28
251 252 2.233271 CTGAAGCACCTGACACCAAAT 58.767 47.619 0.00 0.00 0.00 2.32
252 253 2.227388 CTGAAGCACCTGACACCAAATC 59.773 50.000 0.00 0.00 0.00 2.17
253 254 2.158623 TGAAGCACCTGACACCAAATCT 60.159 45.455 0.00 0.00 0.00 2.40
254 255 2.191128 AGCACCTGACACCAAATCTC 57.809 50.000 0.00 0.00 0.00 2.75
255 256 0.798776 GCACCTGACACCAAATCTCG 59.201 55.000 0.00 0.00 0.00 4.04
256 257 0.798776 CACCTGACACCAAATCTCGC 59.201 55.000 0.00 0.00 0.00 5.03
257 258 0.321653 ACCTGACACCAAATCTCGCC 60.322 55.000 0.00 0.00 0.00 5.54
258 259 0.321564 CCTGACACCAAATCTCGCCA 60.322 55.000 0.00 0.00 0.00 5.69
259 260 0.798776 CTGACACCAAATCTCGCCAC 59.201 55.000 0.00 0.00 0.00 5.01
260 261 0.107643 TGACACCAAATCTCGCCACA 59.892 50.000 0.00 0.00 0.00 4.17
261 262 1.234821 GACACCAAATCTCGCCACAA 58.765 50.000 0.00 0.00 0.00 3.33
262 263 1.197721 GACACCAAATCTCGCCACAAG 59.802 52.381 0.00 0.00 0.00 3.16
263 264 1.202758 ACACCAAATCTCGCCACAAGA 60.203 47.619 0.00 0.00 0.00 3.02
264 265 1.197721 CACCAAATCTCGCCACAAGAC 59.802 52.381 0.00 0.00 0.00 3.01
265 266 0.443869 CCAAATCTCGCCACAAGACG 59.556 55.000 0.00 0.00 0.00 4.18
266 267 1.428448 CAAATCTCGCCACAAGACGA 58.572 50.000 0.00 0.00 36.73 4.20
271 272 3.671262 TCGCCACAAGACGAGAAAA 57.329 47.368 0.00 0.00 33.69 2.29
272 273 1.214367 TCGCCACAAGACGAGAAAAC 58.786 50.000 0.00 0.00 33.69 2.43
273 274 0.234884 CGCCACAAGACGAGAAAACC 59.765 55.000 0.00 0.00 0.00 3.27
274 275 1.305201 GCCACAAGACGAGAAAACCA 58.695 50.000 0.00 0.00 0.00 3.67
275 276 1.673920 GCCACAAGACGAGAAAACCAA 59.326 47.619 0.00 0.00 0.00 3.67
276 277 2.098443 GCCACAAGACGAGAAAACCAAA 59.902 45.455 0.00 0.00 0.00 3.28
277 278 3.691498 CCACAAGACGAGAAAACCAAAC 58.309 45.455 0.00 0.00 0.00 2.93
278 279 3.488553 CCACAAGACGAGAAAACCAAACC 60.489 47.826 0.00 0.00 0.00 3.27
279 280 3.377172 CACAAGACGAGAAAACCAAACCT 59.623 43.478 0.00 0.00 0.00 3.50
280 281 3.626217 ACAAGACGAGAAAACCAAACCTC 59.374 43.478 0.00 0.00 0.00 3.85
281 282 3.553828 AGACGAGAAAACCAAACCTCA 57.446 42.857 0.00 0.00 0.00 3.86
282 283 3.203716 AGACGAGAAAACCAAACCTCAC 58.796 45.455 0.00 0.00 0.00 3.51
283 284 3.118371 AGACGAGAAAACCAAACCTCACT 60.118 43.478 0.00 0.00 0.00 3.41
284 285 2.943033 ACGAGAAAACCAAACCTCACTG 59.057 45.455 0.00 0.00 0.00 3.66
285 286 2.287009 CGAGAAAACCAAACCTCACTGC 60.287 50.000 0.00 0.00 0.00 4.40
286 287 2.031870 AGAAAACCAAACCTCACTGCC 58.968 47.619 0.00 0.00 0.00 4.85
287 288 1.068588 GAAAACCAAACCTCACTGCCC 59.931 52.381 0.00 0.00 0.00 5.36
288 289 0.759060 AAACCAAACCTCACTGCCCC 60.759 55.000 0.00 0.00 0.00 5.80
289 290 1.943730 AACCAAACCTCACTGCCCCA 61.944 55.000 0.00 0.00 0.00 4.96
290 291 1.152567 CCAAACCTCACTGCCCCAA 60.153 57.895 0.00 0.00 0.00 4.12
291 292 0.758685 CCAAACCTCACTGCCCCAAA 60.759 55.000 0.00 0.00 0.00 3.28
292 293 1.118838 CAAACCTCACTGCCCCAAAA 58.881 50.000 0.00 0.00 0.00 2.44
293 294 1.069049 CAAACCTCACTGCCCCAAAAG 59.931 52.381 0.00 0.00 0.00 2.27
294 295 0.555769 AACCTCACTGCCCCAAAAGA 59.444 50.000 0.00 0.00 0.00 2.52
295 296 0.178990 ACCTCACTGCCCCAAAAGAC 60.179 55.000 0.00 0.00 0.00 3.01
296 297 0.178992 CCTCACTGCCCCAAAAGACA 60.179 55.000 0.00 0.00 0.00 3.41
297 298 1.691196 CTCACTGCCCCAAAAGACAA 58.309 50.000 0.00 0.00 0.00 3.18
298 299 1.338020 CTCACTGCCCCAAAAGACAAC 59.662 52.381 0.00 0.00 0.00 3.32
299 300 1.110442 CACTGCCCCAAAAGACAACA 58.890 50.000 0.00 0.00 0.00 3.33
300 301 1.688197 CACTGCCCCAAAAGACAACAT 59.312 47.619 0.00 0.00 0.00 2.71
301 302 1.688197 ACTGCCCCAAAAGACAACATG 59.312 47.619 0.00 0.00 0.00 3.21
302 303 1.962807 CTGCCCCAAAAGACAACATGA 59.037 47.619 0.00 0.00 0.00 3.07
303 304 2.364970 CTGCCCCAAAAGACAACATGAA 59.635 45.455 0.00 0.00 0.00 2.57
304 305 2.971330 TGCCCCAAAAGACAACATGAAT 59.029 40.909 0.00 0.00 0.00 2.57
305 306 3.006752 TGCCCCAAAAGACAACATGAATC 59.993 43.478 0.00 0.00 0.00 2.52
306 307 3.259123 GCCCCAAAAGACAACATGAATCT 59.741 43.478 0.00 0.00 0.00 2.40
307 308 4.462483 GCCCCAAAAGACAACATGAATCTA 59.538 41.667 0.00 0.00 0.00 1.98
308 309 5.127682 GCCCCAAAAGACAACATGAATCTAT 59.872 40.000 0.00 0.00 0.00 1.98
309 310 6.567050 CCCCAAAAGACAACATGAATCTATG 58.433 40.000 0.00 2.73 0.00 2.23
310 311 6.153340 CCCCAAAAGACAACATGAATCTATGT 59.847 38.462 0.00 0.00 42.82 2.29
311 312 7.253422 CCCAAAAGACAACATGAATCTATGTC 58.747 38.462 0.00 4.30 40.24 3.06
312 313 6.963242 CCAAAAGACAACATGAATCTATGTCG 59.037 38.462 0.00 0.00 43.85 4.35
313 314 6.668541 AAAGACAACATGAATCTATGTCGG 57.331 37.500 0.00 0.00 43.85 4.79
314 315 5.598416 AGACAACATGAATCTATGTCGGA 57.402 39.130 0.00 0.00 43.85 4.55
315 316 5.977635 AGACAACATGAATCTATGTCGGAA 58.022 37.500 0.00 0.00 43.85 4.30
316 317 5.812642 AGACAACATGAATCTATGTCGGAAC 59.187 40.000 0.00 0.00 43.85 3.62
317 318 5.734720 ACAACATGAATCTATGTCGGAACT 58.265 37.500 0.00 0.00 40.24 3.01
318 319 5.812642 ACAACATGAATCTATGTCGGAACTC 59.187 40.000 0.00 0.00 40.24 3.01
319 320 4.950050 ACATGAATCTATGTCGGAACTCC 58.050 43.478 0.00 0.00 36.60 3.85
346 347 4.414732 GTCCATACGGGCGAACTC 57.585 61.111 0.00 0.00 36.21 3.01
347 348 1.588139 GTCCATACGGGCGAACTCG 60.588 63.158 0.00 0.00 43.27 4.18
348 349 1.750018 TCCATACGGGCGAACTCGA 60.750 57.895 2.69 0.00 41.87 4.04
349 350 1.299165 CCATACGGGCGAACTCGAG 60.299 63.158 11.84 11.84 43.02 4.04
350 351 1.299165 CATACGGGCGAACTCGAGG 60.299 63.158 18.41 0.00 43.02 4.63
351 352 1.452651 ATACGGGCGAACTCGAGGA 60.453 57.895 18.41 0.00 43.02 3.71
352 353 1.445716 ATACGGGCGAACTCGAGGAG 61.446 60.000 18.41 8.48 43.02 3.69
353 354 4.194720 CGGGCGAACTCGAGGAGG 62.195 72.222 18.41 5.95 43.02 4.30
354 355 2.754658 GGGCGAACTCGAGGAGGA 60.755 66.667 18.41 0.00 43.02 3.71
355 356 2.128507 GGGCGAACTCGAGGAGGAT 61.129 63.158 18.41 0.00 43.02 3.24
356 357 1.677637 GGGCGAACTCGAGGAGGATT 61.678 60.000 18.41 0.45 43.02 3.01
357 358 0.528684 GGCGAACTCGAGGAGGATTG 60.529 60.000 18.41 2.69 43.02 2.67
358 359 0.528684 GCGAACTCGAGGAGGATTGG 60.529 60.000 18.41 3.93 43.02 3.16
359 360 1.103803 CGAACTCGAGGAGGATTGGA 58.896 55.000 18.41 0.00 43.02 3.53
360 361 1.066303 CGAACTCGAGGAGGATTGGAG 59.934 57.143 18.41 0.00 43.02 3.86
361 362 0.827368 AACTCGAGGAGGATTGGAGC 59.173 55.000 18.41 0.00 33.35 4.70
362 363 1.045911 ACTCGAGGAGGATTGGAGCC 61.046 60.000 18.41 0.00 33.35 4.70
363 364 1.001631 TCGAGGAGGATTGGAGCCA 59.998 57.895 0.00 0.00 0.00 4.75
364 365 1.045350 TCGAGGAGGATTGGAGCCAG 61.045 60.000 0.00 0.00 0.00 4.85
365 366 1.835693 GAGGAGGATTGGAGCCAGG 59.164 63.158 0.00 0.00 0.00 4.45
366 367 0.692419 GAGGAGGATTGGAGCCAGGA 60.692 60.000 0.00 0.00 0.00 3.86
367 368 0.253347 AGGAGGATTGGAGCCAGGAA 60.253 55.000 0.00 0.00 0.00 3.36
368 369 0.182299 GGAGGATTGGAGCCAGGAAG 59.818 60.000 0.00 0.00 0.00 3.46
369 370 0.465278 GAGGATTGGAGCCAGGAAGC 60.465 60.000 0.00 0.00 0.00 3.86
370 371 1.210204 AGGATTGGAGCCAGGAAGCA 61.210 55.000 0.00 0.00 34.23 3.91
371 372 0.323725 GGATTGGAGCCAGGAAGCAA 60.324 55.000 0.00 0.00 34.23 3.91
372 373 1.549203 GATTGGAGCCAGGAAGCAAA 58.451 50.000 0.00 0.00 34.23 3.68
373 374 1.203287 GATTGGAGCCAGGAAGCAAAC 59.797 52.381 0.00 0.00 34.23 2.93
374 375 0.185901 TTGGAGCCAGGAAGCAAACT 59.814 50.000 0.00 0.00 34.23 2.66
375 376 0.185901 TGGAGCCAGGAAGCAAACTT 59.814 50.000 0.00 0.00 39.43 2.66
376 377 0.600057 GGAGCCAGGAAGCAAACTTG 59.400 55.000 0.00 0.00 35.82 3.16
377 378 1.609208 GAGCCAGGAAGCAAACTTGA 58.391 50.000 0.00 0.00 35.82 3.02
378 379 1.956477 GAGCCAGGAAGCAAACTTGAA 59.044 47.619 0.00 0.00 35.82 2.69
379 380 1.959282 AGCCAGGAAGCAAACTTGAAG 59.041 47.619 0.00 0.00 35.82 3.02
380 381 1.956477 GCCAGGAAGCAAACTTGAAGA 59.044 47.619 0.00 0.00 35.82 2.87
381 382 2.362077 GCCAGGAAGCAAACTTGAAGAA 59.638 45.455 0.00 0.00 35.82 2.52
382 383 3.551659 GCCAGGAAGCAAACTTGAAGAAG 60.552 47.826 0.00 0.00 35.82 2.85
383 384 3.633986 CCAGGAAGCAAACTTGAAGAAGT 59.366 43.478 0.00 0.00 44.79 3.01
384 385 4.821805 CCAGGAAGCAAACTTGAAGAAGTA 59.178 41.667 0.00 0.00 41.87 2.24
385 386 5.049129 CCAGGAAGCAAACTTGAAGAAGTAG 60.049 44.000 0.00 0.00 41.87 2.57
386 387 4.517075 AGGAAGCAAACTTGAAGAAGTAGC 59.483 41.667 0.00 0.00 41.87 3.58
387 388 4.320567 GGAAGCAAACTTGAAGAAGTAGCC 60.321 45.833 0.00 0.00 41.87 3.93
388 389 4.092116 AGCAAACTTGAAGAAGTAGCCT 57.908 40.909 0.00 0.00 41.87 4.58
389 390 5.228945 AGCAAACTTGAAGAAGTAGCCTA 57.771 39.130 0.00 0.00 41.87 3.93
390 391 5.621193 AGCAAACTTGAAGAAGTAGCCTAA 58.379 37.500 0.00 0.00 41.87 2.69
391 392 6.241645 AGCAAACTTGAAGAAGTAGCCTAAT 58.758 36.000 0.00 0.00 41.87 1.73
392 393 6.372937 AGCAAACTTGAAGAAGTAGCCTAATC 59.627 38.462 0.00 0.00 41.87 1.75
393 394 6.372937 GCAAACTTGAAGAAGTAGCCTAATCT 59.627 38.462 0.00 0.00 41.87 2.40
394 395 7.549488 GCAAACTTGAAGAAGTAGCCTAATCTA 59.451 37.037 0.00 0.00 41.87 1.98
395 396 9.436957 CAAACTTGAAGAAGTAGCCTAATCTAA 57.563 33.333 0.00 0.00 41.87 2.10
397 398 9.438228 AACTTGAAGAAGTAGCCTAATCTAAAC 57.562 33.333 0.00 0.00 41.87 2.01
398 399 8.817876 ACTTGAAGAAGTAGCCTAATCTAAACT 58.182 33.333 0.00 0.00 40.85 2.66
401 402 9.476928 TGAAGAAGTAGCCTAATCTAAACTACT 57.523 33.333 0.00 0.00 44.04 2.57
405 406 9.964303 GAAGTAGCCTAATCTAAACTACTAACC 57.036 37.037 0.00 0.00 41.96 2.85
406 407 8.164058 AGTAGCCTAATCTAAACTACTAACCG 57.836 38.462 0.00 0.00 41.22 4.44
407 408 7.995488 AGTAGCCTAATCTAAACTACTAACCGA 59.005 37.037 0.00 0.00 41.22 4.69
408 409 7.651027 AGCCTAATCTAAACTACTAACCGAA 57.349 36.000 0.00 0.00 0.00 4.30
409 410 7.487484 AGCCTAATCTAAACTACTAACCGAAC 58.513 38.462 0.00 0.00 0.00 3.95
410 411 6.699204 GCCTAATCTAAACTACTAACCGAACC 59.301 42.308 0.00 0.00 0.00 3.62
411 412 7.631377 GCCTAATCTAAACTACTAACCGAACCA 60.631 40.741 0.00 0.00 0.00 3.67
412 413 7.919621 CCTAATCTAAACTACTAACCGAACCAG 59.080 40.741 0.00 0.00 0.00 4.00
413 414 7.472334 AATCTAAACTACTAACCGAACCAGA 57.528 36.000 0.00 0.00 0.00 3.86
414 415 6.506500 TCTAAACTACTAACCGAACCAGAG 57.493 41.667 0.00 0.00 0.00 3.35
415 416 6.240894 TCTAAACTACTAACCGAACCAGAGA 58.759 40.000 0.00 0.00 0.00 3.10
416 417 5.388408 AAACTACTAACCGAACCAGAGAG 57.612 43.478 0.00 0.00 0.00 3.20
417 418 4.298103 ACTACTAACCGAACCAGAGAGA 57.702 45.455 0.00 0.00 0.00 3.10
418 419 4.009002 ACTACTAACCGAACCAGAGAGAC 58.991 47.826 0.00 0.00 0.00 3.36
419 420 2.169330 ACTAACCGAACCAGAGAGACC 58.831 52.381 0.00 0.00 0.00 3.85
420 421 2.225066 ACTAACCGAACCAGAGAGACCT 60.225 50.000 0.00 0.00 0.00 3.85
421 422 0.969894 AACCGAACCAGAGAGACCTG 59.030 55.000 0.00 0.00 0.00 4.00
429 430 2.977772 CAGAGAGACCTGGATTCACC 57.022 55.000 0.00 0.00 39.54 4.02
430 431 2.465813 CAGAGAGACCTGGATTCACCT 58.534 52.381 0.00 0.00 39.86 4.00
431 432 2.168106 CAGAGAGACCTGGATTCACCTG 59.832 54.545 0.00 5.66 39.86 4.00
432 433 0.908198 AGAGACCTGGATTCACCTGC 59.092 55.000 0.00 0.00 39.86 4.85
433 434 0.107459 GAGACCTGGATTCACCTGCC 60.107 60.000 0.00 0.00 39.86 4.85
434 435 1.077429 GACCTGGATTCACCTGCCC 60.077 63.158 0.00 0.00 39.86 5.36
435 436 2.124570 CCTGGATTCACCTGCCCG 60.125 66.667 0.00 0.00 39.86 6.13
436 437 2.825836 CTGGATTCACCTGCCCGC 60.826 66.667 0.00 0.00 39.86 6.13
437 438 4.424711 TGGATTCACCTGCCCGCC 62.425 66.667 0.00 0.00 39.86 6.13
438 439 4.424711 GGATTCACCTGCCCGCCA 62.425 66.667 0.00 0.00 35.41 5.69
439 440 3.134127 GATTCACCTGCCCGCCAC 61.134 66.667 0.00 0.00 0.00 5.01
440 441 4.740822 ATTCACCTGCCCGCCACC 62.741 66.667 0.00 0.00 0.00 4.61
454 455 4.278513 CACCGGCCACCAAAGGGA 62.279 66.667 0.00 0.00 38.05 4.20
455 456 4.280019 ACCGGCCACCAAAGGGAC 62.280 66.667 0.00 0.00 38.05 4.46
456 457 4.278513 CCGGCCACCAAAGGGACA 62.279 66.667 2.24 0.00 38.05 4.02
457 458 2.672996 CGGCCACCAAAGGGACAG 60.673 66.667 2.24 0.00 38.05 3.51
458 459 2.283173 GGCCACCAAAGGGACAGG 60.283 66.667 0.00 0.00 38.05 4.00
459 460 2.991540 GCCACCAAAGGGACAGGC 60.992 66.667 0.00 0.00 40.72 4.85
460 461 2.520458 CCACCAAAGGGACAGGCA 59.480 61.111 0.00 0.00 38.05 4.75
461 462 1.604593 CCACCAAAGGGACAGGCAG 60.605 63.158 0.00 0.00 38.05 4.85
462 463 1.455849 CACCAAAGGGACAGGCAGA 59.544 57.895 0.00 0.00 38.05 4.26
463 464 0.607489 CACCAAAGGGACAGGCAGAG 60.607 60.000 0.00 0.00 38.05 3.35
464 465 1.001641 CCAAAGGGACAGGCAGAGG 60.002 63.158 0.00 0.00 35.59 3.69
465 466 1.001641 CAAAGGGACAGGCAGAGGG 60.002 63.158 0.00 0.00 0.00 4.30
466 467 2.234296 AAAGGGACAGGCAGAGGGG 61.234 63.158 0.00 0.00 0.00 4.79
467 468 2.713111 AAAGGGACAGGCAGAGGGGA 62.713 60.000 0.00 0.00 0.00 4.81
468 469 2.610859 GGGACAGGCAGAGGGGAA 60.611 66.667 0.00 0.00 0.00 3.97
469 470 2.674220 GGGACAGGCAGAGGGGAAG 61.674 68.421 0.00 0.00 0.00 3.46
470 471 2.270527 GACAGGCAGAGGGGAAGC 59.729 66.667 0.00 0.00 0.00 3.86
471 472 3.672295 GACAGGCAGAGGGGAAGCG 62.672 68.421 0.00 0.00 0.00 4.68
472 473 3.393970 CAGGCAGAGGGGAAGCGA 61.394 66.667 0.00 0.00 0.00 4.93
473 474 2.607750 AGGCAGAGGGGAAGCGAA 60.608 61.111 0.00 0.00 0.00 4.70
474 475 1.997874 AGGCAGAGGGGAAGCGAAT 60.998 57.895 0.00 0.00 0.00 3.34
475 476 1.524849 GGCAGAGGGGAAGCGAATC 60.525 63.158 0.00 0.00 0.00 2.52
476 477 1.524849 GCAGAGGGGAAGCGAATCC 60.525 63.158 0.00 0.00 38.86 3.01
477 478 1.907739 CAGAGGGGAAGCGAATCCA 59.092 57.895 8.89 0.00 41.55 3.41
478 479 0.462759 CAGAGGGGAAGCGAATCCAC 60.463 60.000 8.89 5.27 43.70 4.02
480 481 2.513897 GGGGAAGCGAATCCACGG 60.514 66.667 8.89 0.00 41.55 4.94
481 482 2.582436 GGGAAGCGAATCCACGGA 59.418 61.111 8.89 0.00 41.55 4.69
482 483 1.814169 GGGAAGCGAATCCACGGAC 60.814 63.158 8.89 0.00 41.55 4.79
483 484 1.218316 GGAAGCGAATCCACGGACT 59.782 57.895 2.33 0.00 39.42 3.85
484 485 0.806492 GGAAGCGAATCCACGGACTC 60.806 60.000 2.33 0.00 39.42 3.36
485 486 1.140407 GAAGCGAATCCACGGACTCG 61.140 60.000 12.35 12.35 45.11 4.18
487 488 2.490217 CGAATCCACGGACTCGCT 59.510 61.111 3.78 0.00 37.08 4.93
488 489 1.874019 CGAATCCACGGACTCGCTG 60.874 63.158 3.78 0.00 37.08 5.18
489 490 1.511305 GAATCCACGGACTCGCTGA 59.489 57.895 0.00 0.00 40.63 4.26
490 491 0.802607 GAATCCACGGACTCGCTGAC 60.803 60.000 0.00 0.00 40.63 3.51
491 492 2.543687 AATCCACGGACTCGCTGACG 62.544 60.000 0.00 0.00 40.63 4.35
513 514 5.748630 ACGAAGTTTGGAGAAAAGAATTTGC 59.251 36.000 0.00 0.00 37.78 3.68
514 515 5.175673 CGAAGTTTGGAGAAAAGAATTTGCC 59.824 40.000 0.00 0.00 39.02 4.52
515 516 4.960938 AGTTTGGAGAAAAGAATTTGCCC 58.039 39.130 0.00 0.00 39.02 5.36
516 517 4.655649 AGTTTGGAGAAAAGAATTTGCCCT 59.344 37.500 0.00 0.00 39.02 5.19
517 518 5.838521 AGTTTGGAGAAAAGAATTTGCCCTA 59.161 36.000 0.00 0.00 39.02 3.53
518 519 5.982890 TTGGAGAAAAGAATTTGCCCTAG 57.017 39.130 0.00 0.00 39.02 3.02
519 520 3.763897 TGGAGAAAAGAATTTGCCCTAGC 59.236 43.478 0.00 0.00 39.02 3.42
520 521 3.131223 GGAGAAAAGAATTTGCCCTAGCC 59.869 47.826 0.00 0.00 39.02 3.93
521 522 3.763897 GAGAAAAGAATTTGCCCTAGCCA 59.236 43.478 0.00 0.00 39.02 4.75
522 523 4.356436 AGAAAAGAATTTGCCCTAGCCAT 58.644 39.130 0.00 0.00 39.02 4.40
523 524 4.779489 AGAAAAGAATTTGCCCTAGCCATT 59.221 37.500 0.00 0.00 39.02 3.16
524 525 5.249163 AGAAAAGAATTTGCCCTAGCCATTT 59.751 36.000 0.00 0.00 39.02 2.32
525 526 6.440328 AGAAAAGAATTTGCCCTAGCCATTTA 59.560 34.615 0.00 0.00 39.02 1.40
526 527 5.859205 AAGAATTTGCCCTAGCCATTTAG 57.141 39.130 0.00 0.00 38.69 1.85
527 528 4.218312 AGAATTTGCCCTAGCCATTTAGG 58.782 43.478 0.00 0.00 39.99 2.69
542 543 6.853720 GCCATTTAGGGTTAGAGAAAAAGAC 58.146 40.000 0.00 0.00 38.09 3.01
543 544 6.433093 GCCATTTAGGGTTAGAGAAAAAGACA 59.567 38.462 0.00 0.00 38.09 3.41
544 545 7.362142 GCCATTTAGGGTTAGAGAAAAAGACAG 60.362 40.741 0.00 0.00 38.09 3.51
545 546 7.665974 CCATTTAGGGTTAGAGAAAAAGACAGT 59.334 37.037 0.00 0.00 0.00 3.55
546 547 8.507249 CATTTAGGGTTAGAGAAAAAGACAGTG 58.493 37.037 0.00 0.00 0.00 3.66
547 548 5.888982 AGGGTTAGAGAAAAAGACAGTGA 57.111 39.130 0.00 0.00 0.00 3.41
548 549 5.859495 AGGGTTAGAGAAAAAGACAGTGAG 58.141 41.667 0.00 0.00 0.00 3.51
549 550 4.452795 GGGTTAGAGAAAAAGACAGTGAGC 59.547 45.833 0.00 0.00 0.00 4.26
550 551 4.452795 GGTTAGAGAAAAAGACAGTGAGCC 59.547 45.833 0.00 0.00 0.00 4.70
551 552 3.845781 AGAGAAAAAGACAGTGAGCCA 57.154 42.857 0.00 0.00 0.00 4.75
552 553 4.363991 AGAGAAAAAGACAGTGAGCCAT 57.636 40.909 0.00 0.00 0.00 4.40
553 554 5.489792 AGAGAAAAAGACAGTGAGCCATA 57.510 39.130 0.00 0.00 0.00 2.74
554 555 5.486526 AGAGAAAAAGACAGTGAGCCATAG 58.513 41.667 0.00 0.00 0.00 2.23
555 556 5.012561 AGAGAAAAAGACAGTGAGCCATAGT 59.987 40.000 0.00 0.00 0.00 2.12
556 557 5.625150 AGAAAAAGACAGTGAGCCATAGTT 58.375 37.500 0.00 0.00 0.00 2.24
557 558 6.064717 AGAAAAAGACAGTGAGCCATAGTTT 58.935 36.000 0.00 0.00 0.00 2.66
558 559 6.547510 AGAAAAAGACAGTGAGCCATAGTTTT 59.452 34.615 0.00 0.00 0.00 2.43
559 560 7.719633 AGAAAAAGACAGTGAGCCATAGTTTTA 59.280 33.333 0.00 0.00 0.00 1.52
560 561 7.817418 AAAAGACAGTGAGCCATAGTTTTAA 57.183 32.000 0.00 0.00 0.00 1.52
561 562 6.803154 AAGACAGTGAGCCATAGTTTTAAC 57.197 37.500 0.00 0.00 0.00 2.01
562 563 5.865085 AGACAGTGAGCCATAGTTTTAACA 58.135 37.500 0.00 0.00 0.00 2.41
563 564 6.296026 AGACAGTGAGCCATAGTTTTAACAA 58.704 36.000 0.00 0.00 0.00 2.83
564 565 6.204882 AGACAGTGAGCCATAGTTTTAACAAC 59.795 38.462 0.00 0.00 0.00 3.32
565 566 5.825679 ACAGTGAGCCATAGTTTTAACAACA 59.174 36.000 0.00 0.00 0.00 3.33
566 567 6.017109 ACAGTGAGCCATAGTTTTAACAACAG 60.017 38.462 0.00 0.00 0.00 3.16
567 568 6.204688 CAGTGAGCCATAGTTTTAACAACAGA 59.795 38.462 0.00 0.00 0.00 3.41
568 569 6.770785 AGTGAGCCATAGTTTTAACAACAGAA 59.229 34.615 0.00 0.00 0.00 3.02
569 570 7.448469 AGTGAGCCATAGTTTTAACAACAGAAT 59.552 33.333 0.00 0.00 0.00 2.40
570 571 8.726988 GTGAGCCATAGTTTTAACAACAGAATA 58.273 33.333 0.00 0.00 0.00 1.75
571 572 9.290988 TGAGCCATAGTTTTAACAACAGAATAA 57.709 29.630 0.00 0.00 0.00 1.40
572 573 9.556030 GAGCCATAGTTTTAACAACAGAATAAC 57.444 33.333 0.00 0.00 0.00 1.89
573 574 8.520351 AGCCATAGTTTTAACAACAGAATAACC 58.480 33.333 0.00 0.00 0.00 2.85
574 575 8.301002 GCCATAGTTTTAACAACAGAATAACCA 58.699 33.333 0.00 0.00 0.00 3.67
701 741 0.179119 GTTATCCCACACGCGCTAGT 60.179 55.000 5.73 0.00 0.00 2.57
716 756 3.365832 CGCTAGTTTTATTAGGACGCGA 58.634 45.455 15.93 0.00 40.38 5.87
839 879 9.313323 CGTATTAAATCAGTGCCAAATATTACG 57.687 33.333 0.00 0.00 0.00 3.18
1219 1262 4.814294 CGAAAGGCGGAGGGGTCG 62.814 72.222 0.00 0.00 36.03 4.79
1220 1263 4.468689 GAAAGGCGGAGGGGTCGG 62.469 72.222 0.00 0.00 0.00 4.79
1249 1292 4.517703 CCTCGTCGTCCTCGTCGC 62.518 72.222 0.00 0.00 44.86 5.19
1287 1330 4.477975 GCGGAGTCGTCGTCCCAG 62.478 72.222 0.00 0.00 38.89 4.45
1537 1616 3.487209 CCGTTAGAGCTAAGTCCGAGAAC 60.487 52.174 0.00 0.00 0.00 3.01
1566 1646 0.816825 CCGCTGTTGCTGCATAGGAT 60.817 55.000 1.84 0.00 36.97 3.24
1568 1648 0.666913 GCTGTTGCTGCATAGGATGG 59.333 55.000 1.84 0.00 36.03 3.51
1571 1651 1.281577 TGTTGCTGCATAGGATGGTGA 59.718 47.619 1.84 0.00 0.00 4.02
1572 1652 1.672881 GTTGCTGCATAGGATGGTGAC 59.327 52.381 1.84 0.00 0.00 3.67
1574 1654 0.882042 GCTGCATAGGATGGTGACGG 60.882 60.000 0.00 0.00 0.00 4.79
1575 1655 0.465705 CTGCATAGGATGGTGACGGT 59.534 55.000 0.00 0.00 0.00 4.83
1576 1656 0.908910 TGCATAGGATGGTGACGGTT 59.091 50.000 0.00 0.00 0.00 4.44
1577 1657 2.102420 CTGCATAGGATGGTGACGGTTA 59.898 50.000 0.00 0.00 0.00 2.85
1578 1658 2.502130 TGCATAGGATGGTGACGGTTAA 59.498 45.455 0.00 0.00 0.00 2.01
1579 1659 2.870411 GCATAGGATGGTGACGGTTAAC 59.130 50.000 0.00 0.00 0.00 2.01
1738 1841 1.001745 GGTTGTTTCGACGGCATTGC 61.002 55.000 0.00 0.00 0.00 3.56
1752 1855 1.402968 GCATTGCGTGTCTGATTCCAT 59.597 47.619 0.00 0.00 0.00 3.41
1758 1861 2.555199 CGTGTCTGATTCCATCCTTCC 58.445 52.381 0.00 0.00 0.00 3.46
1766 1869 2.978156 TTCCATCCTTCCTTGCTTGT 57.022 45.000 0.00 0.00 0.00 3.16
1767 1870 4.018506 TGATTCCATCCTTCCTTGCTTGTA 60.019 41.667 0.00 0.00 0.00 2.41
1769 1872 4.156455 TCCATCCTTCCTTGCTTGTATC 57.844 45.455 0.00 0.00 0.00 2.24
1804 1915 6.240176 GGTGAACTAGAGGGAGATAGAGAGAT 60.240 46.154 0.00 0.00 0.00 2.75
1816 1927 5.170198 AGATAGAGAGATGGAGAGGTAGGT 58.830 45.833 0.00 0.00 0.00 3.08
1817 1928 3.593442 AGAGAGATGGAGAGGTAGGTG 57.407 52.381 0.00 0.00 0.00 4.00
1831 1942 0.036483 TAGGTGCGCATGCTCTGAAA 60.036 50.000 15.91 0.00 43.34 2.69
1847 1958 4.498241 TCTGAAATCTGAACTGACGATGG 58.502 43.478 0.00 0.00 0.00 3.51
1867 1978 2.948315 GGAGGAAGACATGGCAGAATTC 59.052 50.000 0.00 0.00 0.00 2.17
1913 2029 2.301870 TGGTTAGGTGCAGGACTAACAG 59.698 50.000 25.12 0.00 46.73 3.16
1926 2042 1.959899 CTAACAGACCTTGCGCTGCG 61.960 60.000 19.17 19.17 35.57 5.18
1942 2064 3.254654 CGCGCACGTACAGGATGG 61.255 66.667 8.75 0.00 35.45 3.51
1995 2117 1.896465 AGACTGTTTCTCCCGAGGAAG 59.104 52.381 0.00 0.00 0.00 3.46
1999 2121 3.258622 ACTGTTTCTCCCGAGGAAGTAAG 59.741 47.826 0.00 0.00 0.00 2.34
2021 2143 6.874134 TAAGCATTCTTCAGTTCAGGTAGAAC 59.126 38.462 0.00 0.00 43.48 3.01
2031 2153 0.970937 CAGGTAGAACGCCCTCCTCA 60.971 60.000 0.00 0.00 0.00 3.86
2059 2181 4.051922 GTGAGGAATGACGGCTTATACTG 58.948 47.826 0.00 0.00 0.00 2.74
2064 2186 5.538813 AGGAATGACGGCTTATACTGTGATA 59.461 40.000 0.00 0.00 0.00 2.15
2081 2211 7.285566 ACTGTGATAATTACTCCTGATGCAAT 58.714 34.615 0.00 0.00 0.00 3.56
2098 2228 3.191162 TGCAATCGAACAAGGGAAGATTG 59.809 43.478 10.92 10.92 46.32 2.67
2106 2236 6.380274 TCGAACAAGGGAAGATTGTAGATACT 59.620 38.462 0.00 0.00 39.91 2.12
2121 2251 6.424032 TGTAGATACTATGGCCGTAGATCAT 58.576 40.000 34.04 23.03 0.00 2.45
2134 2264 4.062293 CGTAGATCATCGGCCCAAAATTA 58.938 43.478 0.00 0.00 0.00 1.40
2148 2294 4.466015 CCCAAAATTACAGTACAATGGCCT 59.534 41.667 3.32 0.00 0.00 5.19
2184 2330 3.009363 TCATCTTCCTGCTGGATGTTTGA 59.991 43.478 20.44 19.80 42.81 2.69
2196 2342 5.975939 GCTGGATGTTTGAATTTGAGATAGC 59.024 40.000 0.00 0.00 0.00 2.97
2209 2355 5.984695 TTGAGATAGCATACCGAGCTAAT 57.015 39.130 0.00 0.00 46.55 1.73
2211 2357 6.346477 TGAGATAGCATACCGAGCTAATTT 57.654 37.500 0.00 0.00 46.55 1.82
2212 2358 7.462571 TGAGATAGCATACCGAGCTAATTTA 57.537 36.000 0.00 0.00 46.55 1.40
2213 2359 7.313646 TGAGATAGCATACCGAGCTAATTTAC 58.686 38.462 0.00 0.00 46.55 2.01
2214 2360 6.631962 AGATAGCATACCGAGCTAATTTACC 58.368 40.000 0.00 0.00 46.55 2.85
2319 6371 6.700960 TGCCCATTTCGCATATCTAATTTTTG 59.299 34.615 0.00 0.00 0.00 2.44
2322 6374 9.480053 CCCATTTCGCATATCTAATTTTTGATT 57.520 29.630 0.00 0.00 0.00 2.57
2398 6452 2.034124 AGCAGCAAAAAGGAGCTTGAA 58.966 42.857 0.00 0.00 39.50 2.69
2433 6487 2.032550 GTGGCTGCTAACATATGCACTG 59.967 50.000 1.58 0.00 35.20 3.66
2471 6525 4.702831 GAAAACCTGGAAAATGGCAAGAA 58.297 39.130 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.349300 AGATGCTTTGTATATCCGTTGAACT 58.651 36.000 0.00 0.00 0.00 3.01
1 2 6.604735 AGATGCTTTGTATATCCGTTGAAC 57.395 37.500 0.00 0.00 0.00 3.18
2 3 6.821160 TCAAGATGCTTTGTATATCCGTTGAA 59.179 34.615 0.00 0.00 0.00 2.69
3 4 6.345298 TCAAGATGCTTTGTATATCCGTTGA 58.655 36.000 0.00 0.00 0.00 3.18
4 5 6.603237 TCAAGATGCTTTGTATATCCGTTG 57.397 37.500 0.00 0.00 0.00 4.10
5 6 6.597672 TGTTCAAGATGCTTTGTATATCCGTT 59.402 34.615 0.00 0.00 0.00 4.44
6 7 6.112734 TGTTCAAGATGCTTTGTATATCCGT 58.887 36.000 0.00 0.00 0.00 4.69
7 8 6.603237 TGTTCAAGATGCTTTGTATATCCG 57.397 37.500 0.00 0.00 0.00 4.18
8 9 9.277783 ACTATGTTCAAGATGCTTTGTATATCC 57.722 33.333 0.00 0.00 0.00 2.59
34 35 9.936759 GGGTCCTGAAATTTCAATGTAATTTAA 57.063 29.630 20.82 3.39 35.83 1.52
35 36 8.536175 GGGGTCCTGAAATTTCAATGTAATTTA 58.464 33.333 20.82 0.00 35.83 1.40
36 37 7.394016 GGGGTCCTGAAATTTCAATGTAATTT 58.606 34.615 20.82 9.75 37.77 1.82
37 38 6.070251 GGGGGTCCTGAAATTTCAATGTAATT 60.070 38.462 20.82 0.00 36.64 1.40
38 39 5.425217 GGGGGTCCTGAAATTTCAATGTAAT 59.575 40.000 20.82 0.00 36.64 1.89
39 40 4.775253 GGGGGTCCTGAAATTTCAATGTAA 59.225 41.667 20.82 3.47 36.64 2.41
40 41 4.202727 TGGGGGTCCTGAAATTTCAATGTA 60.203 41.667 20.82 5.08 36.64 2.29
41 42 3.173151 GGGGGTCCTGAAATTTCAATGT 58.827 45.455 20.82 0.00 36.64 2.71
42 43 3.172339 TGGGGGTCCTGAAATTTCAATG 58.828 45.455 20.82 14.84 36.64 2.82
43 44 3.444029 CTGGGGGTCCTGAAATTTCAAT 58.556 45.455 20.82 0.00 36.64 2.57
44 45 2.492567 CCTGGGGGTCCTGAAATTTCAA 60.493 50.000 20.82 5.44 36.64 2.69
45 46 1.077005 CCTGGGGGTCCTGAAATTTCA 59.923 52.381 19.45 19.45 34.32 2.69
46 47 1.852633 CCTGGGGGTCCTGAAATTTC 58.147 55.000 11.41 11.41 34.32 2.17
47 48 0.252239 GCCTGGGGGTCCTGAAATTT 60.252 55.000 0.00 0.00 34.32 1.82
48 49 1.388133 GCCTGGGGGTCCTGAAATT 59.612 57.895 0.00 0.00 34.32 1.82
49 50 1.442886 TTGCCTGGGGGTCCTGAAAT 61.443 55.000 0.00 0.00 34.32 2.17
50 51 1.442886 ATTGCCTGGGGGTCCTGAAA 61.443 55.000 0.00 0.00 34.32 2.69
51 52 1.856873 ATTGCCTGGGGGTCCTGAA 60.857 57.895 0.00 0.00 34.32 3.02
52 53 2.204291 ATTGCCTGGGGGTCCTGA 60.204 61.111 0.00 0.00 34.32 3.86
53 54 2.276740 GATTGCCTGGGGGTCCTG 59.723 66.667 0.00 0.00 34.45 3.86
54 55 2.204291 TGATTGCCTGGGGGTCCT 60.204 61.111 0.00 0.00 34.45 3.85
55 56 1.279025 TAGTGATTGCCTGGGGGTCC 61.279 60.000 0.00 0.00 34.45 4.46
56 57 0.846693 ATAGTGATTGCCTGGGGGTC 59.153 55.000 0.00 0.00 34.45 4.46
57 58 1.063717 CAATAGTGATTGCCTGGGGGT 60.064 52.381 0.00 0.00 36.29 4.95
58 59 1.696063 CAATAGTGATTGCCTGGGGG 58.304 55.000 0.00 0.00 36.29 5.40
66 67 1.667236 TCTGGCGGCAATAGTGATTG 58.333 50.000 14.48 0.00 44.62 2.67
67 68 2.017049 GTTCTGGCGGCAATAGTGATT 58.983 47.619 14.48 0.00 0.00 2.57
68 69 1.668419 GTTCTGGCGGCAATAGTGAT 58.332 50.000 14.48 0.00 0.00 3.06
69 70 0.739462 CGTTCTGGCGGCAATAGTGA 60.739 55.000 14.48 3.03 0.00 3.41
70 71 0.739462 TCGTTCTGGCGGCAATAGTG 60.739 55.000 14.48 0.07 0.00 2.74
71 72 0.460284 CTCGTTCTGGCGGCAATAGT 60.460 55.000 14.48 0.00 0.00 2.12
72 73 1.766143 GCTCGTTCTGGCGGCAATAG 61.766 60.000 14.48 0.95 0.00 1.73
73 74 1.813753 GCTCGTTCTGGCGGCAATA 60.814 57.895 14.48 0.52 0.00 1.90
74 75 3.127533 GCTCGTTCTGGCGGCAAT 61.128 61.111 14.48 0.00 0.00 3.56
81 82 4.514577 ATCGGCGGCTCGTTCTGG 62.515 66.667 7.21 0.00 0.00 3.86
82 83 3.257561 CATCGGCGGCTCGTTCTG 61.258 66.667 7.21 0.00 0.00 3.02
104 105 3.518998 TAGAGGAGCGGCGACAGC 61.519 66.667 12.98 0.00 44.18 4.40
105 106 2.409651 GTAGAGGAGCGGCGACAG 59.590 66.667 12.98 0.00 0.00 3.51
106 107 3.138798 GGTAGAGGAGCGGCGACA 61.139 66.667 12.98 0.00 0.00 4.35
107 108 4.253257 CGGTAGAGGAGCGGCGAC 62.253 72.222 12.98 3.05 45.37 5.19
115 116 2.124403 GTCGGCTCCGGTAGAGGA 60.124 66.667 8.59 0.00 43.46 3.71
116 117 1.753463 AAGTCGGCTCCGGTAGAGG 60.753 63.158 8.59 0.00 43.46 3.69
117 118 1.030488 TCAAGTCGGCTCCGGTAGAG 61.030 60.000 8.59 0.00 46.29 2.43
118 119 1.001764 TCAAGTCGGCTCCGGTAGA 60.002 57.895 8.59 0.00 40.25 2.59
119 120 1.139095 GTCAAGTCGGCTCCGGTAG 59.861 63.158 8.59 0.00 40.25 3.18
120 121 2.345760 GGTCAAGTCGGCTCCGGTA 61.346 63.158 8.59 0.00 40.25 4.02
121 122 3.692406 GGTCAAGTCGGCTCCGGT 61.692 66.667 8.59 0.00 40.25 5.28
122 123 2.943978 AAGGTCAAGTCGGCTCCGG 61.944 63.158 8.59 0.00 40.25 5.14
123 124 1.738099 CAAGGTCAAGTCGGCTCCG 60.738 63.158 1.14 1.14 41.35 4.63
124 125 0.670854 GACAAGGTCAAGTCGGCTCC 60.671 60.000 0.00 0.00 32.09 4.70
125 126 0.033504 TGACAAGGTCAAGTCGGCTC 59.966 55.000 0.00 0.00 39.78 4.70
126 127 0.468226 TTGACAAGGTCAAGTCGGCT 59.532 50.000 7.66 0.00 45.88 5.52
127 128 3.000815 TTGACAAGGTCAAGTCGGC 57.999 52.632 7.66 0.00 45.88 5.54
134 135 2.547855 CCGACTGTCATTGACAAGGTCA 60.548 50.000 26.10 0.00 42.26 4.02
135 136 2.069273 CCGACTGTCATTGACAAGGTC 58.931 52.381 19.44 20.30 42.26 3.85
136 137 1.270839 CCCGACTGTCATTGACAAGGT 60.271 52.381 19.44 14.74 42.26 3.50
137 138 1.001974 TCCCGACTGTCATTGACAAGG 59.998 52.381 19.44 19.88 42.26 3.61
138 139 2.455674 TCCCGACTGTCATTGACAAG 57.544 50.000 19.44 15.20 42.26 3.16
139 140 2.104111 ACTTCCCGACTGTCATTGACAA 59.896 45.455 19.44 1.96 42.26 3.18
140 141 1.691976 ACTTCCCGACTGTCATTGACA 59.308 47.619 18.08 18.08 40.50 3.58
141 142 2.028930 AGACTTCCCGACTGTCATTGAC 60.029 50.000 9.93 9.93 33.56 3.18
142 143 2.248248 AGACTTCCCGACTGTCATTGA 58.752 47.619 8.73 0.00 33.56 2.57
143 144 2.751166 AGACTTCCCGACTGTCATTG 57.249 50.000 8.73 0.00 33.56 2.82
144 145 2.352814 CGAAGACTTCCCGACTGTCATT 60.353 50.000 9.63 0.00 33.56 2.57
145 146 1.202582 CGAAGACTTCCCGACTGTCAT 59.797 52.381 9.63 0.00 33.56 3.06
146 147 0.596577 CGAAGACTTCCCGACTGTCA 59.403 55.000 9.63 0.00 33.56 3.58
147 148 0.597072 ACGAAGACTTCCCGACTGTC 59.403 55.000 9.63 0.00 0.00 3.51
148 149 0.314302 CACGAAGACTTCCCGACTGT 59.686 55.000 9.63 0.00 0.00 3.55
149 150 1.009389 GCACGAAGACTTCCCGACTG 61.009 60.000 9.63 0.00 0.00 3.51
150 151 1.289380 GCACGAAGACTTCCCGACT 59.711 57.895 9.63 0.00 0.00 4.18
151 152 1.006571 TGCACGAAGACTTCCCGAC 60.007 57.895 9.63 0.00 0.00 4.79
152 153 1.006571 GTGCACGAAGACTTCCCGA 60.007 57.895 9.63 0.00 0.00 5.14
153 154 2.372690 CGTGCACGAAGACTTCCCG 61.373 63.158 34.93 1.26 43.02 5.14
154 155 1.300697 ACGTGCACGAAGACTTCCC 60.301 57.895 42.94 0.00 43.02 3.97
155 156 1.853319 CACGTGCACGAAGACTTCC 59.147 57.895 42.94 0.00 43.02 3.46
156 157 1.201825 GCACGTGCACGAAGACTTC 59.798 57.895 42.94 19.21 43.02 3.01
157 158 2.244651 GGCACGTGCACGAAGACTT 61.245 57.895 42.94 19.18 44.36 3.01
158 159 2.661866 GGCACGTGCACGAAGACT 60.662 61.111 42.94 19.98 44.36 3.24
159 160 3.712881 GGGCACGTGCACGAAGAC 61.713 66.667 42.94 33.69 44.36 3.01
165 166 2.746277 CCTTAGGGGCACGTGCAC 60.746 66.667 38.60 36.67 45.53 4.57
190 191 3.655810 GACGACTGCAGCTCCAGGG 62.656 68.421 15.27 2.91 37.16 4.45
191 192 2.125753 GACGACTGCAGCTCCAGG 60.126 66.667 15.27 0.00 37.16 4.45
192 193 2.505777 CGACGACTGCAGCTCCAG 60.506 66.667 15.27 2.15 38.78 3.86
193 194 4.724602 GCGACGACTGCAGCTCCA 62.725 66.667 15.27 0.00 0.00 3.86
206 207 2.750888 GCAAGGGATCAACGGCGAC 61.751 63.158 16.62 0.00 0.00 5.19
207 208 2.435938 GCAAGGGATCAACGGCGA 60.436 61.111 16.62 0.00 0.00 5.54
208 209 0.813610 TATGCAAGGGATCAACGGCG 60.814 55.000 4.80 4.80 0.00 6.46
209 210 0.947244 CTATGCAAGGGATCAACGGC 59.053 55.000 0.00 0.00 0.00 5.68
210 211 2.614057 GTTCTATGCAAGGGATCAACGG 59.386 50.000 0.00 0.00 0.00 4.44
211 212 3.310774 CAGTTCTATGCAAGGGATCAACG 59.689 47.826 0.00 0.00 0.00 4.10
212 213 4.517285 TCAGTTCTATGCAAGGGATCAAC 58.483 43.478 0.00 0.00 0.00 3.18
213 214 4.842531 TCAGTTCTATGCAAGGGATCAA 57.157 40.909 0.00 0.00 0.00 2.57
214 215 4.774124 CTTCAGTTCTATGCAAGGGATCA 58.226 43.478 0.00 0.00 0.00 2.92
215 216 3.563390 GCTTCAGTTCTATGCAAGGGATC 59.437 47.826 0.00 0.00 0.00 3.36
216 217 3.054139 TGCTTCAGTTCTATGCAAGGGAT 60.054 43.478 0.00 0.00 0.00 3.85
217 218 2.305635 TGCTTCAGTTCTATGCAAGGGA 59.694 45.455 0.00 0.00 0.00 4.20
218 219 2.421424 GTGCTTCAGTTCTATGCAAGGG 59.579 50.000 0.00 0.00 35.34 3.95
219 220 2.421424 GGTGCTTCAGTTCTATGCAAGG 59.579 50.000 0.00 0.00 35.34 3.61
220 221 3.126514 CAGGTGCTTCAGTTCTATGCAAG 59.873 47.826 0.00 0.00 35.34 4.01
221 222 3.076621 CAGGTGCTTCAGTTCTATGCAA 58.923 45.455 0.00 0.00 35.34 4.08
222 223 2.302733 TCAGGTGCTTCAGTTCTATGCA 59.697 45.455 0.00 0.00 0.00 3.96
223 224 2.675348 GTCAGGTGCTTCAGTTCTATGC 59.325 50.000 0.00 0.00 0.00 3.14
224 225 3.681897 GTGTCAGGTGCTTCAGTTCTATG 59.318 47.826 0.00 0.00 0.00 2.23
225 226 3.307059 GGTGTCAGGTGCTTCAGTTCTAT 60.307 47.826 0.00 0.00 0.00 1.98
226 227 2.037251 GGTGTCAGGTGCTTCAGTTCTA 59.963 50.000 0.00 0.00 0.00 2.10
227 228 1.202698 GGTGTCAGGTGCTTCAGTTCT 60.203 52.381 0.00 0.00 0.00 3.01
228 229 1.230324 GGTGTCAGGTGCTTCAGTTC 58.770 55.000 0.00 0.00 0.00 3.01
229 230 0.546122 TGGTGTCAGGTGCTTCAGTT 59.454 50.000 0.00 0.00 0.00 3.16
230 231 0.546122 TTGGTGTCAGGTGCTTCAGT 59.454 50.000 0.00 0.00 0.00 3.41
231 232 1.679139 TTTGGTGTCAGGTGCTTCAG 58.321 50.000 0.00 0.00 0.00 3.02
232 233 2.158623 AGATTTGGTGTCAGGTGCTTCA 60.159 45.455 0.00 0.00 0.00 3.02
233 234 2.485814 GAGATTTGGTGTCAGGTGCTTC 59.514 50.000 0.00 0.00 0.00 3.86
234 235 2.508526 GAGATTTGGTGTCAGGTGCTT 58.491 47.619 0.00 0.00 0.00 3.91
235 236 1.609061 CGAGATTTGGTGTCAGGTGCT 60.609 52.381 0.00 0.00 0.00 4.40
236 237 0.798776 CGAGATTTGGTGTCAGGTGC 59.201 55.000 0.00 0.00 0.00 5.01
237 238 0.798776 GCGAGATTTGGTGTCAGGTG 59.201 55.000 0.00 0.00 0.00 4.00
238 239 0.321653 GGCGAGATTTGGTGTCAGGT 60.322 55.000 0.00 0.00 0.00 4.00
239 240 0.321564 TGGCGAGATTTGGTGTCAGG 60.322 55.000 0.00 0.00 0.00 3.86
240 241 0.798776 GTGGCGAGATTTGGTGTCAG 59.201 55.000 0.00 0.00 0.00 3.51
241 242 0.107643 TGTGGCGAGATTTGGTGTCA 59.892 50.000 0.00 0.00 0.00 3.58
242 243 1.197721 CTTGTGGCGAGATTTGGTGTC 59.802 52.381 0.00 0.00 0.00 3.67
243 244 1.202758 TCTTGTGGCGAGATTTGGTGT 60.203 47.619 0.00 0.00 0.00 4.16
244 245 1.197721 GTCTTGTGGCGAGATTTGGTG 59.802 52.381 0.00 0.00 0.00 4.17
245 246 1.523758 GTCTTGTGGCGAGATTTGGT 58.476 50.000 0.00 0.00 0.00 3.67
246 247 0.443869 CGTCTTGTGGCGAGATTTGG 59.556 55.000 0.00 0.00 0.00 3.28
247 248 1.428448 TCGTCTTGTGGCGAGATTTG 58.572 50.000 0.00 0.00 32.98 2.32
248 249 3.906660 TCGTCTTGTGGCGAGATTT 57.093 47.368 0.00 0.00 32.98 2.17
253 254 1.214367 GTTTTCTCGTCTTGTGGCGA 58.786 50.000 0.00 0.00 35.70 5.54
254 255 0.234884 GGTTTTCTCGTCTTGTGGCG 59.765 55.000 0.00 0.00 0.00 5.69
255 256 1.305201 TGGTTTTCTCGTCTTGTGGC 58.695 50.000 0.00 0.00 0.00 5.01
256 257 3.488553 GGTTTGGTTTTCTCGTCTTGTGG 60.489 47.826 0.00 0.00 0.00 4.17
257 258 3.377172 AGGTTTGGTTTTCTCGTCTTGTG 59.623 43.478 0.00 0.00 0.00 3.33
258 259 3.617284 AGGTTTGGTTTTCTCGTCTTGT 58.383 40.909 0.00 0.00 0.00 3.16
259 260 3.625764 TGAGGTTTGGTTTTCTCGTCTTG 59.374 43.478 0.00 0.00 0.00 3.02
260 261 3.626217 GTGAGGTTTGGTTTTCTCGTCTT 59.374 43.478 0.00 0.00 0.00 3.01
261 262 3.118371 AGTGAGGTTTGGTTTTCTCGTCT 60.118 43.478 0.00 0.00 0.00 4.18
262 263 3.002348 CAGTGAGGTTTGGTTTTCTCGTC 59.998 47.826 0.00 0.00 0.00 4.20
263 264 2.943033 CAGTGAGGTTTGGTTTTCTCGT 59.057 45.455 0.00 0.00 0.00 4.18
264 265 2.287009 GCAGTGAGGTTTGGTTTTCTCG 60.287 50.000 0.00 0.00 0.00 4.04
265 266 2.034685 GGCAGTGAGGTTTGGTTTTCTC 59.965 50.000 0.00 0.00 0.00 2.87
266 267 2.031870 GGCAGTGAGGTTTGGTTTTCT 58.968 47.619 0.00 0.00 0.00 2.52
267 268 1.068588 GGGCAGTGAGGTTTGGTTTTC 59.931 52.381 0.00 0.00 0.00 2.29
268 269 1.119684 GGGCAGTGAGGTTTGGTTTT 58.880 50.000 0.00 0.00 0.00 2.43
269 270 0.759060 GGGGCAGTGAGGTTTGGTTT 60.759 55.000 0.00 0.00 0.00 3.27
270 271 1.152546 GGGGCAGTGAGGTTTGGTT 60.153 57.895 0.00 0.00 0.00 3.67
271 272 1.943730 TTGGGGCAGTGAGGTTTGGT 61.944 55.000 0.00 0.00 0.00 3.67
272 273 0.758685 TTTGGGGCAGTGAGGTTTGG 60.759 55.000 0.00 0.00 0.00 3.28
273 274 1.069049 CTTTTGGGGCAGTGAGGTTTG 59.931 52.381 0.00 0.00 0.00 2.93
274 275 1.063266 TCTTTTGGGGCAGTGAGGTTT 60.063 47.619 0.00 0.00 0.00 3.27
275 276 0.555769 TCTTTTGGGGCAGTGAGGTT 59.444 50.000 0.00 0.00 0.00 3.50
276 277 0.178990 GTCTTTTGGGGCAGTGAGGT 60.179 55.000 0.00 0.00 0.00 3.85
277 278 0.178992 TGTCTTTTGGGGCAGTGAGG 60.179 55.000 0.00 0.00 0.00 3.86
278 279 1.338020 GTTGTCTTTTGGGGCAGTGAG 59.662 52.381 0.00 0.00 0.00 3.51
279 280 1.341482 TGTTGTCTTTTGGGGCAGTGA 60.341 47.619 0.00 0.00 0.00 3.41
280 281 1.110442 TGTTGTCTTTTGGGGCAGTG 58.890 50.000 0.00 0.00 0.00 3.66
281 282 1.688197 CATGTTGTCTTTTGGGGCAGT 59.312 47.619 0.00 0.00 0.00 4.40
282 283 1.962807 TCATGTTGTCTTTTGGGGCAG 59.037 47.619 0.00 0.00 0.00 4.85
283 284 2.079170 TCATGTTGTCTTTTGGGGCA 57.921 45.000 0.00 0.00 0.00 5.36
284 285 3.259123 AGATTCATGTTGTCTTTTGGGGC 59.741 43.478 0.00 0.00 0.00 5.80
285 286 6.153340 ACATAGATTCATGTTGTCTTTTGGGG 59.847 38.462 0.00 0.00 35.60 4.96
286 287 7.161773 ACATAGATTCATGTTGTCTTTTGGG 57.838 36.000 0.00 0.00 35.60 4.12
287 288 6.963242 CGACATAGATTCATGTTGTCTTTTGG 59.037 38.462 0.00 0.00 39.25 3.28
288 289 6.963242 CCGACATAGATTCATGTTGTCTTTTG 59.037 38.462 11.93 0.62 39.25 2.44
289 290 6.878923 TCCGACATAGATTCATGTTGTCTTTT 59.121 34.615 11.93 0.00 39.25 2.27
290 291 6.406370 TCCGACATAGATTCATGTTGTCTTT 58.594 36.000 11.93 0.00 39.25 2.52
291 292 5.977635 TCCGACATAGATTCATGTTGTCTT 58.022 37.500 11.93 0.00 39.25 3.01
292 293 5.598416 TCCGACATAGATTCATGTTGTCT 57.402 39.130 11.93 0.00 39.25 3.41
293 294 5.812642 AGTTCCGACATAGATTCATGTTGTC 59.187 40.000 11.93 0.00 39.25 3.18
294 295 5.734720 AGTTCCGACATAGATTCATGTTGT 58.265 37.500 11.93 0.00 39.25 3.32
295 296 5.235186 GGAGTTCCGACATAGATTCATGTTG 59.765 44.000 0.00 8.41 39.25 3.33
296 297 5.360591 GGAGTTCCGACATAGATTCATGTT 58.639 41.667 0.00 0.00 39.25 2.71
297 298 4.950050 GGAGTTCCGACATAGATTCATGT 58.050 43.478 0.00 2.63 41.83 3.21
329 330 1.588139 CGAGTTCGCCCGTATGGAC 60.588 63.158 1.27 0.00 37.49 4.02
330 331 1.721664 CTCGAGTTCGCCCGTATGGA 61.722 60.000 3.62 0.00 39.60 3.41
331 332 1.299165 CTCGAGTTCGCCCGTATGG 60.299 63.158 3.62 0.00 39.60 2.74
332 333 1.299165 CCTCGAGTTCGCCCGTATG 60.299 63.158 12.31 0.00 39.60 2.39
333 334 1.445716 CTCCTCGAGTTCGCCCGTAT 61.446 60.000 12.31 0.00 39.60 3.06
334 335 2.046023 TCCTCGAGTTCGCCCGTA 60.046 61.111 12.31 0.00 39.60 4.02
335 336 3.441290 CTCCTCGAGTTCGCCCGT 61.441 66.667 12.31 0.00 39.60 5.28
336 337 4.194720 CCTCCTCGAGTTCGCCCG 62.195 72.222 12.31 0.00 39.60 6.13
337 338 1.677637 AATCCTCCTCGAGTTCGCCC 61.678 60.000 12.31 0.00 39.60 6.13
338 339 0.528684 CAATCCTCCTCGAGTTCGCC 60.529 60.000 12.31 0.00 39.60 5.54
339 340 0.528684 CCAATCCTCCTCGAGTTCGC 60.529 60.000 12.31 0.00 39.60 4.70
340 341 1.066303 CTCCAATCCTCCTCGAGTTCG 59.934 57.143 12.31 0.00 41.45 3.95
341 342 1.202475 GCTCCAATCCTCCTCGAGTTC 60.202 57.143 12.31 0.00 0.00 3.01
342 343 0.827368 GCTCCAATCCTCCTCGAGTT 59.173 55.000 12.31 0.00 0.00 3.01
343 344 1.045911 GGCTCCAATCCTCCTCGAGT 61.046 60.000 12.31 0.00 0.00 4.18
344 345 1.045350 TGGCTCCAATCCTCCTCGAG 61.045 60.000 5.13 5.13 0.00 4.04
345 346 1.001631 TGGCTCCAATCCTCCTCGA 59.998 57.895 0.00 0.00 0.00 4.04
346 347 1.445095 CTGGCTCCAATCCTCCTCG 59.555 63.158 0.00 0.00 0.00 4.63
347 348 0.692419 TCCTGGCTCCAATCCTCCTC 60.692 60.000 0.00 0.00 0.00 3.71
348 349 0.253347 TTCCTGGCTCCAATCCTCCT 60.253 55.000 0.00 0.00 0.00 3.69
349 350 0.182299 CTTCCTGGCTCCAATCCTCC 59.818 60.000 0.00 0.00 0.00 4.30
350 351 0.465278 GCTTCCTGGCTCCAATCCTC 60.465 60.000 0.00 0.00 0.00 3.71
351 352 1.210204 TGCTTCCTGGCTCCAATCCT 61.210 55.000 0.00 0.00 0.00 3.24
352 353 0.323725 TTGCTTCCTGGCTCCAATCC 60.324 55.000 0.00 0.00 0.00 3.01
353 354 1.203287 GTTTGCTTCCTGGCTCCAATC 59.797 52.381 0.00 0.00 0.00 2.67
354 355 1.203100 AGTTTGCTTCCTGGCTCCAAT 60.203 47.619 0.00 0.00 0.00 3.16
355 356 0.185901 AGTTTGCTTCCTGGCTCCAA 59.814 50.000 0.00 0.00 0.00 3.53
356 357 0.185901 AAGTTTGCTTCCTGGCTCCA 59.814 50.000 0.00 0.00 0.00 3.86
357 358 0.600057 CAAGTTTGCTTCCTGGCTCC 59.400 55.000 0.00 0.00 31.49 4.70
358 359 1.609208 TCAAGTTTGCTTCCTGGCTC 58.391 50.000 0.00 0.00 31.49 4.70
359 360 1.959282 CTTCAAGTTTGCTTCCTGGCT 59.041 47.619 0.00 0.00 31.49 4.75
360 361 1.956477 TCTTCAAGTTTGCTTCCTGGC 59.044 47.619 0.00 0.00 31.49 4.85
361 362 3.633986 ACTTCTTCAAGTTTGCTTCCTGG 59.366 43.478 0.00 0.00 40.16 4.45
362 363 4.907879 ACTTCTTCAAGTTTGCTTCCTG 57.092 40.909 0.00 0.00 40.16 3.86
363 364 4.517075 GCTACTTCTTCAAGTTTGCTTCCT 59.483 41.667 0.00 0.00 40.16 3.36
364 365 4.320567 GGCTACTTCTTCAAGTTTGCTTCC 60.321 45.833 10.34 0.00 40.16 3.46
365 366 4.517075 AGGCTACTTCTTCAAGTTTGCTTC 59.483 41.667 0.00 0.18 40.16 3.86
366 367 4.464947 AGGCTACTTCTTCAAGTTTGCTT 58.535 39.130 0.00 3.44 40.16 3.91
367 368 4.092116 AGGCTACTTCTTCAAGTTTGCT 57.908 40.909 0.00 0.00 40.16 3.91
368 369 5.941948 TTAGGCTACTTCTTCAAGTTTGC 57.058 39.130 0.00 0.00 40.16 3.68
369 370 7.913674 AGATTAGGCTACTTCTTCAAGTTTG 57.086 36.000 0.00 0.00 40.16 2.93
371 372 9.438228 GTTTAGATTAGGCTACTTCTTCAAGTT 57.562 33.333 10.50 0.00 40.16 2.66
372 373 8.817876 AGTTTAGATTAGGCTACTTCTTCAAGT 58.182 33.333 10.50 5.96 45.39 3.16
375 376 9.476928 AGTAGTTTAGATTAGGCTACTTCTTCA 57.523 33.333 10.50 0.00 39.19 3.02
379 380 9.964303 GGTTAGTAGTTTAGATTAGGCTACTTC 57.036 37.037 7.67 0.00 41.48 3.01
380 381 8.628280 CGGTTAGTAGTTTAGATTAGGCTACTT 58.372 37.037 7.67 0.00 41.48 2.24
381 382 7.995488 TCGGTTAGTAGTTTAGATTAGGCTACT 59.005 37.037 0.00 0.00 43.07 2.57
382 383 8.159344 TCGGTTAGTAGTTTAGATTAGGCTAC 57.841 38.462 0.00 0.00 34.05 3.58
383 384 8.624776 GTTCGGTTAGTAGTTTAGATTAGGCTA 58.375 37.037 0.00 0.00 0.00 3.93
384 385 7.417229 GGTTCGGTTAGTAGTTTAGATTAGGCT 60.417 40.741 0.00 0.00 0.00 4.58
385 386 6.699204 GGTTCGGTTAGTAGTTTAGATTAGGC 59.301 42.308 0.00 0.00 0.00 3.93
386 387 7.775120 TGGTTCGGTTAGTAGTTTAGATTAGG 58.225 38.462 0.00 0.00 0.00 2.69
387 388 8.680903 TCTGGTTCGGTTAGTAGTTTAGATTAG 58.319 37.037 0.00 0.00 0.00 1.73
388 389 8.579850 TCTGGTTCGGTTAGTAGTTTAGATTA 57.420 34.615 0.00 0.00 0.00 1.75
389 390 7.395489 TCTCTGGTTCGGTTAGTAGTTTAGATT 59.605 37.037 0.00 0.00 0.00 2.40
390 391 6.888632 TCTCTGGTTCGGTTAGTAGTTTAGAT 59.111 38.462 0.00 0.00 0.00 1.98
391 392 6.240894 TCTCTGGTTCGGTTAGTAGTTTAGA 58.759 40.000 0.00 0.00 0.00 2.10
392 393 6.373774 TCTCTCTGGTTCGGTTAGTAGTTTAG 59.626 42.308 0.00 0.00 0.00 1.85
393 394 6.150140 GTCTCTCTGGTTCGGTTAGTAGTTTA 59.850 42.308 0.00 0.00 0.00 2.01
394 395 5.048154 GTCTCTCTGGTTCGGTTAGTAGTTT 60.048 44.000 0.00 0.00 0.00 2.66
395 396 4.458642 GTCTCTCTGGTTCGGTTAGTAGTT 59.541 45.833 0.00 0.00 0.00 2.24
396 397 4.009002 GTCTCTCTGGTTCGGTTAGTAGT 58.991 47.826 0.00 0.00 0.00 2.73
397 398 3.377798 GGTCTCTCTGGTTCGGTTAGTAG 59.622 52.174 0.00 0.00 0.00 2.57
398 399 3.009916 AGGTCTCTCTGGTTCGGTTAGTA 59.990 47.826 0.00 0.00 0.00 1.82
399 400 2.169330 GGTCTCTCTGGTTCGGTTAGT 58.831 52.381 0.00 0.00 0.00 2.24
400 401 2.164624 CAGGTCTCTCTGGTTCGGTTAG 59.835 54.545 0.00 0.00 0.00 2.34
401 402 2.168496 CAGGTCTCTCTGGTTCGGTTA 58.832 52.381 0.00 0.00 0.00 2.85
402 403 0.969894 CAGGTCTCTCTGGTTCGGTT 59.030 55.000 0.00 0.00 0.00 4.44
403 404 0.900647 CCAGGTCTCTCTGGTTCGGT 60.901 60.000 2.93 0.00 46.89 4.69
404 405 1.893786 CCAGGTCTCTCTGGTTCGG 59.106 63.158 2.93 0.00 46.89 4.30
410 411 2.168106 CAGGTGAATCCAGGTCTCTCTG 59.832 54.545 0.00 0.00 39.02 3.35
411 412 2.465813 CAGGTGAATCCAGGTCTCTCT 58.534 52.381 0.00 0.00 39.02 3.10
412 413 1.134551 GCAGGTGAATCCAGGTCTCTC 60.135 57.143 0.00 0.00 39.02 3.20
413 414 0.908198 GCAGGTGAATCCAGGTCTCT 59.092 55.000 0.00 0.00 39.02 3.10
414 415 0.107459 GGCAGGTGAATCCAGGTCTC 60.107 60.000 0.00 0.00 39.02 3.36
415 416 1.566298 GGGCAGGTGAATCCAGGTCT 61.566 60.000 0.00 0.00 39.02 3.85
416 417 1.077429 GGGCAGGTGAATCCAGGTC 60.077 63.158 0.00 0.00 39.02 3.85
417 418 2.971598 CGGGCAGGTGAATCCAGGT 61.972 63.158 0.00 0.00 39.02 4.00
418 419 2.124570 CGGGCAGGTGAATCCAGG 60.125 66.667 0.00 0.00 39.02 4.45
419 420 2.825836 GCGGGCAGGTGAATCCAG 60.826 66.667 0.00 0.00 39.02 3.86
420 421 4.424711 GGCGGGCAGGTGAATCCA 62.425 66.667 0.00 0.00 39.02 3.41
421 422 4.424711 TGGCGGGCAGGTGAATCC 62.425 66.667 0.00 0.00 0.00 3.01
422 423 3.134127 GTGGCGGGCAGGTGAATC 61.134 66.667 3.75 0.00 0.00 2.52
423 424 4.740822 GGTGGCGGGCAGGTGAAT 62.741 66.667 3.75 0.00 0.00 2.57
437 438 4.278513 TCCCTTTGGTGGCCGGTG 62.279 66.667 1.90 0.00 0.00 4.94
438 439 4.280019 GTCCCTTTGGTGGCCGGT 62.280 66.667 1.90 0.00 0.00 5.28
439 440 4.278513 TGTCCCTTTGGTGGCCGG 62.279 66.667 0.00 0.00 0.00 6.13
440 441 2.672996 CTGTCCCTTTGGTGGCCG 60.673 66.667 0.00 0.00 0.00 6.13
441 442 2.283173 CCTGTCCCTTTGGTGGCC 60.283 66.667 0.00 0.00 0.00 5.36
442 443 2.991540 GCCTGTCCCTTTGGTGGC 60.992 66.667 0.00 0.00 36.82 5.01
443 444 1.604593 CTGCCTGTCCCTTTGGTGG 60.605 63.158 0.00 0.00 0.00 4.61
444 445 0.607489 CTCTGCCTGTCCCTTTGGTG 60.607 60.000 0.00 0.00 0.00 4.17
445 446 1.763770 CTCTGCCTGTCCCTTTGGT 59.236 57.895 0.00 0.00 0.00 3.67
446 447 1.001641 CCTCTGCCTGTCCCTTTGG 60.002 63.158 0.00 0.00 0.00 3.28
447 448 1.001641 CCCTCTGCCTGTCCCTTTG 60.002 63.158 0.00 0.00 0.00 2.77
448 449 2.234296 CCCCTCTGCCTGTCCCTTT 61.234 63.158 0.00 0.00 0.00 3.11
449 450 2.612115 CCCCTCTGCCTGTCCCTT 60.612 66.667 0.00 0.00 0.00 3.95
450 451 3.194025 TTCCCCTCTGCCTGTCCCT 62.194 63.158 0.00 0.00 0.00 4.20
451 452 2.610859 TTCCCCTCTGCCTGTCCC 60.611 66.667 0.00 0.00 0.00 4.46
452 453 2.993853 CTTCCCCTCTGCCTGTCC 59.006 66.667 0.00 0.00 0.00 4.02
453 454 2.270527 GCTTCCCCTCTGCCTGTC 59.729 66.667 0.00 0.00 0.00 3.51
454 455 3.710722 CGCTTCCCCTCTGCCTGT 61.711 66.667 0.00 0.00 0.00 4.00
455 456 2.262774 ATTCGCTTCCCCTCTGCCTG 62.263 60.000 0.00 0.00 0.00 4.85
456 457 1.977293 GATTCGCTTCCCCTCTGCCT 61.977 60.000 0.00 0.00 0.00 4.75
457 458 1.524849 GATTCGCTTCCCCTCTGCC 60.525 63.158 0.00 0.00 0.00 4.85
458 459 1.524849 GGATTCGCTTCCCCTCTGC 60.525 63.158 0.00 0.00 0.00 4.26
459 460 0.462759 GTGGATTCGCTTCCCCTCTG 60.463 60.000 1.59 0.00 34.67 3.35
460 461 1.908483 GTGGATTCGCTTCCCCTCT 59.092 57.895 1.59 0.00 34.67 3.69
461 462 1.521681 CGTGGATTCGCTTCCCCTC 60.522 63.158 1.59 0.00 34.67 4.30
462 463 2.584608 CGTGGATTCGCTTCCCCT 59.415 61.111 1.59 0.00 34.67 4.79
463 464 2.513897 CCGTGGATTCGCTTCCCC 60.514 66.667 1.59 0.00 34.67 4.81
464 465 1.814169 GTCCGTGGATTCGCTTCCC 60.814 63.158 0.00 0.00 34.67 3.97
465 466 0.806492 GAGTCCGTGGATTCGCTTCC 60.806 60.000 0.00 0.00 36.24 3.46
466 467 1.140407 CGAGTCCGTGGATTCGCTTC 61.140 60.000 18.77 0.00 44.63 3.86
467 468 1.153823 CGAGTCCGTGGATTCGCTT 60.154 57.895 18.77 0.00 44.63 4.68
468 469 2.490217 CGAGTCCGTGGATTCGCT 59.510 61.111 18.77 0.00 44.63 4.93
471 472 0.802607 GTCAGCGAGTCCGTGGATTC 60.803 60.000 1.52 1.52 38.24 2.52
472 473 1.215647 GTCAGCGAGTCCGTGGATT 59.784 57.895 0.00 0.00 38.24 3.01
473 474 2.885861 GTCAGCGAGTCCGTGGAT 59.114 61.111 0.00 0.00 38.24 3.41
474 475 3.733960 CGTCAGCGAGTCCGTGGA 61.734 66.667 0.00 0.00 41.33 4.02
475 476 3.733960 TCGTCAGCGAGTCCGTGG 61.734 66.667 0.00 0.00 42.81 4.94
483 484 0.671796 TCTCCAAACTTCGTCAGCGA 59.328 50.000 0.00 0.00 46.36 4.93
484 485 1.497991 TTCTCCAAACTTCGTCAGCG 58.502 50.000 0.00 0.00 39.92 5.18
485 486 3.560068 TCTTTTCTCCAAACTTCGTCAGC 59.440 43.478 0.00 0.00 0.00 4.26
486 487 5.734855 TTCTTTTCTCCAAACTTCGTCAG 57.265 39.130 0.00 0.00 0.00 3.51
487 488 6.693315 AATTCTTTTCTCCAAACTTCGTCA 57.307 33.333 0.00 0.00 0.00 4.35
488 489 6.074835 GCAAATTCTTTTCTCCAAACTTCGTC 60.075 38.462 0.00 0.00 0.00 4.20
489 490 5.748630 GCAAATTCTTTTCTCCAAACTTCGT 59.251 36.000 0.00 0.00 0.00 3.85
490 491 5.175673 GGCAAATTCTTTTCTCCAAACTTCG 59.824 40.000 0.00 0.00 0.00 3.79
491 492 5.466728 GGGCAAATTCTTTTCTCCAAACTTC 59.533 40.000 0.00 0.00 0.00 3.01
492 493 5.130975 AGGGCAAATTCTTTTCTCCAAACTT 59.869 36.000 0.00 0.00 0.00 2.66
493 494 4.655649 AGGGCAAATTCTTTTCTCCAAACT 59.344 37.500 0.00 0.00 0.00 2.66
494 495 4.960938 AGGGCAAATTCTTTTCTCCAAAC 58.039 39.130 0.00 0.00 0.00 2.93
495 496 5.279456 GCTAGGGCAAATTCTTTTCTCCAAA 60.279 40.000 0.00 0.00 38.54 3.28
496 497 4.220602 GCTAGGGCAAATTCTTTTCTCCAA 59.779 41.667 0.00 0.00 38.54 3.53
497 498 3.763897 GCTAGGGCAAATTCTTTTCTCCA 59.236 43.478 0.00 0.00 38.54 3.86
498 499 3.131223 GGCTAGGGCAAATTCTTTTCTCC 59.869 47.826 0.00 0.00 40.87 3.71
499 500 3.763897 TGGCTAGGGCAAATTCTTTTCTC 59.236 43.478 0.00 0.00 40.87 2.87
500 501 3.778265 TGGCTAGGGCAAATTCTTTTCT 58.222 40.909 0.00 0.00 40.87 2.52
501 502 4.743057 ATGGCTAGGGCAAATTCTTTTC 57.257 40.909 0.00 0.00 42.43 2.29
502 503 5.503634 AAATGGCTAGGGCAAATTCTTTT 57.496 34.783 0.00 0.00 42.43 2.27
503 504 5.129320 CCTAAATGGCTAGGGCAAATTCTTT 59.871 40.000 0.00 0.00 42.43 2.52
504 505 4.651045 CCTAAATGGCTAGGGCAAATTCTT 59.349 41.667 0.00 0.00 42.43 2.52
505 506 4.218312 CCTAAATGGCTAGGGCAAATTCT 58.782 43.478 0.00 0.00 42.43 2.40
506 507 4.590850 CCTAAATGGCTAGGGCAAATTC 57.409 45.455 0.00 0.00 42.43 2.17
514 515 5.888982 TTCTCTAACCCTAAATGGCTAGG 57.111 43.478 0.00 0.00 38.61 3.02
515 516 8.047310 TCTTTTTCTCTAACCCTAAATGGCTAG 58.953 37.037 0.00 0.00 0.00 3.42
516 517 7.827729 GTCTTTTTCTCTAACCCTAAATGGCTA 59.172 37.037 0.00 0.00 0.00 3.93
517 518 6.659668 GTCTTTTTCTCTAACCCTAAATGGCT 59.340 38.462 0.00 0.00 0.00 4.75
518 519 6.433093 TGTCTTTTTCTCTAACCCTAAATGGC 59.567 38.462 0.00 0.00 0.00 4.40
519 520 7.665974 ACTGTCTTTTTCTCTAACCCTAAATGG 59.334 37.037 0.00 0.00 0.00 3.16
520 521 8.507249 CACTGTCTTTTTCTCTAACCCTAAATG 58.493 37.037 0.00 0.00 0.00 2.32
521 522 8.437575 TCACTGTCTTTTTCTCTAACCCTAAAT 58.562 33.333 0.00 0.00 0.00 1.40
522 523 7.798071 TCACTGTCTTTTTCTCTAACCCTAAA 58.202 34.615 0.00 0.00 0.00 1.85
523 524 7.369551 TCACTGTCTTTTTCTCTAACCCTAA 57.630 36.000 0.00 0.00 0.00 2.69
524 525 6.518537 GCTCACTGTCTTTTTCTCTAACCCTA 60.519 42.308 0.00 0.00 0.00 3.53
525 526 5.743422 GCTCACTGTCTTTTTCTCTAACCCT 60.743 44.000 0.00 0.00 0.00 4.34
526 527 4.452795 GCTCACTGTCTTTTTCTCTAACCC 59.547 45.833 0.00 0.00 0.00 4.11
527 528 4.452795 GGCTCACTGTCTTTTTCTCTAACC 59.547 45.833 0.00 0.00 0.00 2.85
528 529 5.057149 TGGCTCACTGTCTTTTTCTCTAAC 58.943 41.667 0.00 0.00 0.00 2.34
529 530 5.290493 TGGCTCACTGTCTTTTTCTCTAA 57.710 39.130 0.00 0.00 0.00 2.10
530 531 4.955811 TGGCTCACTGTCTTTTTCTCTA 57.044 40.909 0.00 0.00 0.00 2.43
531 532 3.845781 TGGCTCACTGTCTTTTTCTCT 57.154 42.857 0.00 0.00 0.00 3.10
532 533 5.241662 ACTATGGCTCACTGTCTTTTTCTC 58.758 41.667 0.00 0.00 0.00 2.87
533 534 5.234466 ACTATGGCTCACTGTCTTTTTCT 57.766 39.130 0.00 0.00 0.00 2.52
534 535 5.948992 AACTATGGCTCACTGTCTTTTTC 57.051 39.130 0.00 0.00 0.00 2.29
535 536 6.715347 AAAACTATGGCTCACTGTCTTTTT 57.285 33.333 0.00 0.00 0.00 1.94
536 537 7.284489 TGTTAAAACTATGGCTCACTGTCTTTT 59.716 33.333 0.00 0.00 0.00 2.27
537 538 6.770785 TGTTAAAACTATGGCTCACTGTCTTT 59.229 34.615 0.00 0.00 0.00 2.52
538 539 6.296026 TGTTAAAACTATGGCTCACTGTCTT 58.704 36.000 0.00 0.00 0.00 3.01
539 540 5.865085 TGTTAAAACTATGGCTCACTGTCT 58.135 37.500 0.00 0.00 0.00 3.41
540 541 6.017440 TGTTGTTAAAACTATGGCTCACTGTC 60.017 38.462 0.00 0.00 0.00 3.51
541 542 5.825679 TGTTGTTAAAACTATGGCTCACTGT 59.174 36.000 0.00 0.00 0.00 3.55
542 543 6.204688 TCTGTTGTTAAAACTATGGCTCACTG 59.795 38.462 0.00 0.00 0.00 3.66
543 544 6.296026 TCTGTTGTTAAAACTATGGCTCACT 58.704 36.000 0.00 0.00 0.00 3.41
544 545 6.554334 TCTGTTGTTAAAACTATGGCTCAC 57.446 37.500 0.00 0.00 0.00 3.51
545 546 7.759489 ATTCTGTTGTTAAAACTATGGCTCA 57.241 32.000 0.00 0.00 0.00 4.26
546 547 9.556030 GTTATTCTGTTGTTAAAACTATGGCTC 57.444 33.333 0.00 0.00 0.00 4.70
547 548 8.520351 GGTTATTCTGTTGTTAAAACTATGGCT 58.480 33.333 0.00 0.00 0.00 4.75
548 549 8.301002 TGGTTATTCTGTTGTTAAAACTATGGC 58.699 33.333 0.00 0.00 0.00 4.40
576 577 9.444600 ACACTCCACGATGTTTATTATAAAACT 57.555 29.630 0.00 0.00 39.57 2.66
665 666 9.701098 GTGGGATAACATGTAGACGATTTTATA 57.299 33.333 0.00 0.00 0.00 0.98
666 667 8.208224 TGTGGGATAACATGTAGACGATTTTAT 58.792 33.333 0.00 0.00 0.00 1.40
701 741 4.095410 TCTCGTTCGCGTCCTAATAAAA 57.905 40.909 5.77 0.00 42.11 1.52
716 756 7.415653 GCTCAAATGGATTTAATTCCTCTCGTT 60.416 37.037 15.58 2.80 36.68 3.85
860 900 0.392998 CTGTGGGTTTCCTCCATCCG 60.393 60.000 0.00 0.00 36.58 4.18
991 1034 0.955428 TGCGGTGCCATTCTCTTGTC 60.955 55.000 0.00 0.00 0.00 3.18
992 1035 1.073025 TGCGGTGCCATTCTCTTGT 59.927 52.632 0.00 0.00 0.00 3.16
993 1036 0.957395 AGTGCGGTGCCATTCTCTTG 60.957 55.000 0.00 0.00 0.00 3.02
994 1037 0.674895 GAGTGCGGTGCCATTCTCTT 60.675 55.000 0.00 0.00 0.00 2.85
995 1038 1.078848 GAGTGCGGTGCCATTCTCT 60.079 57.895 0.00 0.00 0.00 3.10
1228 1271 4.517703 CGAGGACGACGAGGACGC 62.518 72.222 0.00 0.00 43.96 5.19
1230 1273 2.783935 GACGAGGACGACGAGGAC 59.216 66.667 0.00 0.00 42.66 3.85
1517 1596 4.968812 AGTTCTCGGACTTAGCTCTAAC 57.031 45.455 0.00 0.00 0.00 2.34
1548 1628 0.306840 CATCCTATGCAGCAACAGCG 59.693 55.000 0.00 0.00 33.85 5.18
1556 1636 0.465705 ACCGTCACCATCCTATGCAG 59.534 55.000 0.00 0.00 0.00 4.41
1560 1640 4.028131 TCTGTTAACCGTCACCATCCTAT 58.972 43.478 2.48 0.00 0.00 2.57
1566 1646 2.232941 GGATCTCTGTTAACCGTCACCA 59.767 50.000 2.48 0.00 0.00 4.17
1568 1648 2.418334 GGGGATCTCTGTTAACCGTCAC 60.418 54.545 2.48 0.00 0.00 3.67
1571 1651 1.201424 GGGGGATCTCTGTTAACCGT 58.799 55.000 2.48 0.00 0.00 4.83
1572 1652 1.200519 TGGGGGATCTCTGTTAACCG 58.799 55.000 2.48 0.00 0.00 4.44
1574 1654 3.877508 CGAAATGGGGGATCTCTGTTAAC 59.122 47.826 0.00 0.00 0.00 2.01
1575 1655 3.118038 CCGAAATGGGGGATCTCTGTTAA 60.118 47.826 0.00 0.00 0.00 2.01
1576 1656 2.438021 CCGAAATGGGGGATCTCTGTTA 59.562 50.000 0.00 0.00 0.00 2.41
1577 1657 1.212935 CCGAAATGGGGGATCTCTGTT 59.787 52.381 0.00 0.00 0.00 3.16
1578 1658 0.839946 CCGAAATGGGGGATCTCTGT 59.160 55.000 0.00 0.00 0.00 3.41
1579 1659 0.536006 GCCGAAATGGGGGATCTCTG 60.536 60.000 0.00 0.00 38.63 3.35
1693 1796 5.271598 ACTAATCTGCCATTTCCATTCCAA 58.728 37.500 0.00 0.00 0.00 3.53
1752 1855 5.505181 AGAAAGATACAAGCAAGGAAGGA 57.495 39.130 0.00 0.00 0.00 3.36
1758 1861 5.006386 ACCCAGAAGAAAGATACAAGCAAG 58.994 41.667 0.00 0.00 0.00 4.01
1766 1869 6.381420 CCTCTAGTTCACCCAGAAGAAAGATA 59.619 42.308 0.00 0.00 36.78 1.98
1767 1870 5.188751 CCTCTAGTTCACCCAGAAGAAAGAT 59.811 44.000 0.00 0.00 36.78 2.40
1769 1872 4.323104 CCCTCTAGTTCACCCAGAAGAAAG 60.323 50.000 0.00 0.00 36.78 2.62
1804 1915 1.685765 ATGCGCACCTACCTCTCCA 60.686 57.895 14.90 0.00 0.00 3.86
1816 1927 0.730840 CAGATTTCAGAGCATGCGCA 59.269 50.000 23.73 14.96 42.27 6.09
1817 1928 1.012086 TCAGATTTCAGAGCATGCGC 58.988 50.000 14.17 14.17 38.99 6.09
1831 1942 2.739943 TCCTCCATCGTCAGTTCAGAT 58.260 47.619 0.00 0.00 0.00 2.90
1847 1958 3.883669 AGAATTCTGCCATGTCTTCCTC 58.116 45.455 7.30 0.00 0.00 3.71
1867 1978 2.180131 GACAGGCTGACGCTGCAAAG 62.180 60.000 23.66 0.00 36.09 2.77
1926 2042 2.125673 ACCATCCTGTACGTGCGC 60.126 61.111 0.00 0.00 0.00 6.09
1942 2064 1.635844 TATCGTGTGGACATTGCGAC 58.364 50.000 0.00 0.00 34.36 5.19
1995 2117 6.398918 TCTACCTGAACTGAAGAATGCTTAC 58.601 40.000 0.00 0.00 33.61 2.34
2021 2143 3.710722 ACAGGCTTGAGGAGGGCG 61.711 66.667 1.40 0.00 0.00 6.13
2031 2153 0.036010 CCGTCATTCCTCACAGGCTT 60.036 55.000 0.00 0.00 34.61 4.35
2059 2181 6.646653 TCGATTGCATCAGGAGTAATTATCAC 59.353 38.462 0.00 0.00 0.00 3.06
2064 2186 5.185454 TGTTCGATTGCATCAGGAGTAATT 58.815 37.500 0.00 0.00 0.00 1.40
2081 2211 5.677319 ATCTACAATCTTCCCTTGTTCGA 57.323 39.130 0.00 0.00 37.89 3.71
2083 2213 9.482627 CATAGTATCTACAATCTTCCCTTGTTC 57.517 37.037 0.00 0.00 37.89 3.18
2085 2215 7.473511 GCCATAGTATCTACAATCTTCCCTTGT 60.474 40.741 0.00 0.00 39.93 3.16
2086 2216 6.876257 GCCATAGTATCTACAATCTTCCCTTG 59.124 42.308 0.00 0.00 0.00 3.61
2087 2217 6.013293 GGCCATAGTATCTACAATCTTCCCTT 60.013 42.308 0.00 0.00 0.00 3.95
2088 2218 5.485708 GGCCATAGTATCTACAATCTTCCCT 59.514 44.000 0.00 0.00 0.00 4.20
2098 2228 6.292973 CGATGATCTACGGCCATAGTATCTAC 60.293 46.154 5.63 5.79 0.00 2.59
2121 2251 3.420300 TGTACTGTAATTTTGGGCCGA 57.580 42.857 0.00 0.00 0.00 5.54
2134 2264 3.434167 GGATCATGAGGCCATTGTACTGT 60.434 47.826 5.01 0.00 0.00 3.55
2148 2294 5.826208 CAGGAAGATGAAATGTGGATCATGA 59.174 40.000 0.00 0.00 36.45 3.07
2184 2330 5.220710 AGCTCGGTATGCTATCTCAAATT 57.779 39.130 0.00 0.00 39.21 1.82
2196 2342 5.236478 CACCAAGGTAAATTAGCTCGGTATG 59.764 44.000 13.71 4.55 41.36 2.39
2209 2355 2.287909 GCGCAAATGACACCAAGGTAAA 60.288 45.455 0.30 0.00 0.00 2.01
2211 2357 0.878416 GCGCAAATGACACCAAGGTA 59.122 50.000 0.30 0.00 0.00 3.08
2212 2358 1.659794 GCGCAAATGACACCAAGGT 59.340 52.632 0.30 0.00 0.00 3.50
2213 2359 1.080569 GGCGCAAATGACACCAAGG 60.081 57.895 10.83 0.00 0.00 3.61
2214 2360 1.442520 CGGCGCAAATGACACCAAG 60.443 57.895 10.83 0.00 0.00 3.61
2272 6324 6.128526 GGCAGTGAATAACTCTGAACTGTAAC 60.129 42.308 0.00 0.00 41.05 2.50
2291 6343 2.224606 AGATATGCGAAATGGGCAGTG 58.775 47.619 0.00 0.00 44.71 3.66
2319 6371 0.448990 TTGCGCACTCAGATGCAATC 59.551 50.000 11.12 0.00 46.47 2.67
2322 6374 0.037419 TACTTGCGCACTCAGATGCA 60.037 50.000 11.12 0.00 46.47 3.96
2349 6401 3.892588 AGTAGTTACTGCTATCCTGGAGC 59.107 47.826 0.06 1.33 40.53 4.70
2398 6452 2.554032 GCAGCCACTTGAGTGTGTAAAT 59.446 45.455 10.03 0.00 44.21 1.40
2415 6469 1.945394 AGCAGTGCATATGTTAGCAGC 59.055 47.619 19.20 2.19 42.14 5.25
2433 6487 4.923281 AGGTTTTCGCATACATGAAAAAGC 59.077 37.500 16.47 16.47 43.42 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.