Multiple sequence alignment - TraesCS2A01G486400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G486400 chr2A 100.000 5070 0 0 1 5070 721603763 721598694 0.000000e+00 9363.0
1 TraesCS2A01G486400 chr2A 74.954 543 99 27 1112 1650 721659702 721660211 1.110000e-51 215.0
2 TraesCS2A01G486400 chr2A 97.059 34 1 0 4629 4662 17781156 17781123 1.970000e-04 58.4
3 TraesCS2A01G486400 chr2A 96.970 33 0 1 4629 4661 79307927 79307958 3.000000e-03 54.7
4 TraesCS2A01G486400 chr2D 91.974 1819 122 8 518 2324 586793448 586791642 0.000000e+00 2529.0
5 TraesCS2A01G486400 chr2D 87.517 2251 163 34 2837 4985 586791021 586788787 0.000000e+00 2492.0
6 TraesCS2A01G486400 chr2D 86.429 280 12 7 219 493 586793701 586793443 2.990000e-72 283.0
7 TraesCS2A01G486400 chr2D 74.198 748 150 33 1112 1850 586907680 586908393 6.470000e-69 272.0
8 TraesCS2A01G486400 chr2D 79.239 289 49 6 2862 3143 310087885 310088169 1.860000e-44 191.0
9 TraesCS2A01G486400 chr2D 95.876 97 2 2 5 99 586793788 586793692 6.800000e-34 156.0
10 TraesCS2A01G486400 chr2D 75.253 198 49 0 3201 3398 586842710 586842513 1.500000e-15 95.3
11 TraesCS2A01G486400 chr2B 92.777 1689 107 4 642 2324 708240521 708238842 0.000000e+00 2429.0
12 TraesCS2A01G486400 chr2B 86.781 1581 121 35 2789 4318 708238259 708236716 0.000000e+00 1681.0
13 TraesCS2A01G486400 chr2B 92.791 430 21 7 219 642 708241103 708240678 9.330000e-172 614.0
14 TraesCS2A01G486400 chr2B 84.568 324 21 15 4351 4651 708236634 708236317 1.380000e-75 294.0
15 TraesCS2A01G486400 chr2B 96.970 33 1 0 4629 4661 49097766 49097798 7.090000e-04 56.5
16 TraesCS2A01G486400 chr7A 80.277 289 46 5 2862 3143 575456209 575456493 1.850000e-49 207.0
17 TraesCS2A01G486400 chr7A 97.143 35 0 1 4628 4662 31118850 31118817 1.970000e-04 58.4
18 TraesCS2A01G486400 chr5D 79.167 288 50 6 2862 3143 438366414 438366697 1.860000e-44 191.0
19 TraesCS2A01G486400 chr5D 91.579 95 8 0 138 232 388829231 388829137 1.150000e-26 132.0
20 TraesCS2A01G486400 chr5A 87.097 155 4 2 95 235 215476288 215476136 1.460000e-35 161.0
21 TraesCS2A01G486400 chr5A 88.095 84 10 0 138 221 419215853 419215936 3.230000e-17 100.0
22 TraesCS2A01G486400 chr3A 86.301 146 6 6 95 226 620465114 620464969 4.090000e-31 147.0
23 TraesCS2A01G486400 chr7D 79.487 195 22 9 4874 5066 496785079 496785257 6.890000e-24 122.0
24 TraesCS2A01G486400 chr7D 93.023 43 3 0 186 228 614309028 614309070 4.240000e-06 63.9
25 TraesCS2A01G486400 chr1A 83.099 142 7 2 98 225 9558545 9558683 4.150000e-21 113.0
26 TraesCS2A01G486400 chr3B 84.426 122 4 2 95 201 752657366 752657245 6.940000e-19 106.0
27 TraesCS2A01G486400 chr7B 78.912 147 9 10 95 226 561052250 561052389 4.210000e-11 80.5
28 TraesCS2A01G486400 chr4B 94.286 35 2 0 4630 4664 660420298 660420264 3.000000e-03 54.7
29 TraesCS2A01G486400 chr4B 94.286 35 2 0 4630 4664 660449606 660449572 3.000000e-03 54.7
30 TraesCS2A01G486400 chr1D 100.000 29 0 0 4635 4663 441070289 441070261 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G486400 chr2A 721598694 721603763 5069 True 9363.0 9363 100.00000 1 5070 1 chr2A.!!$R2 5069
1 TraesCS2A01G486400 chr2A 721659702 721660211 509 False 215.0 215 74.95400 1112 1650 1 chr2A.!!$F2 538
2 TraesCS2A01G486400 chr2D 586788787 586793788 5001 True 1365.0 2529 90.44900 5 4985 4 chr2D.!!$R2 4980
3 TraesCS2A01G486400 chr2D 586907680 586908393 713 False 272.0 272 74.19800 1112 1850 1 chr2D.!!$F2 738
4 TraesCS2A01G486400 chr2B 708236317 708241103 4786 True 1254.5 2429 89.22925 219 4651 4 chr2B.!!$R1 4432

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 153 0.109153 TCCGCTCATGCAGCCATAAT 59.891 50.0 10.34 0.0 46.74 1.28 F
173 176 0.461961 AGGAGTGGCTAGAATGACGC 59.538 55.0 0.00 0.0 0.00 5.19 F
2112 2291 0.243907 CTCAGAACGTGTCGGTGGAT 59.756 55.0 0.00 0.0 0.00 3.41 F
2533 2788 0.035881 TGCTGGAGAAGGAAGCACAG 59.964 55.0 0.00 0.0 41.83 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1428 1607 0.172578 CGAACGACTGCCACAGGATA 59.827 55.0 0.00 0.00 35.51 2.59 R
2124 2303 0.755698 TATCCCTGCACTCCTCCGTC 60.756 60.0 0.00 0.00 0.00 4.79 R
3937 4295 0.179070 TGGTTAGCACTGCGACAACA 60.179 50.0 14.29 2.38 0.00 3.33 R
4318 4694 0.323629 GTGCCACTAGTAACAGCCCA 59.676 55.0 0.00 0.00 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.110578 GCCAAATTGCCCAAGAGGTAT 58.889 47.619 0.00 0.00 38.26 2.73
95 98 2.290641 ACGATTTGGTTTGCTCAGTGAC 59.709 45.455 0.00 0.00 0.00 3.67
96 99 2.549754 CGATTTGGTTTGCTCAGTGACT 59.450 45.455 0.00 0.00 0.00 3.41
97 100 3.003689 CGATTTGGTTTGCTCAGTGACTT 59.996 43.478 0.00 0.00 0.00 3.01
98 101 4.213270 CGATTTGGTTTGCTCAGTGACTTA 59.787 41.667 0.00 0.00 0.00 2.24
99 102 5.615544 CGATTTGGTTTGCTCAGTGACTTAG 60.616 44.000 0.00 0.00 0.00 2.18
100 103 3.126001 TGGTTTGCTCAGTGACTTAGG 57.874 47.619 0.00 0.00 0.00 2.69
101 104 1.807142 GGTTTGCTCAGTGACTTAGGC 59.193 52.381 0.00 0.00 0.00 3.93
102 105 1.807142 GTTTGCTCAGTGACTTAGGCC 59.193 52.381 0.00 0.00 0.00 5.19
103 106 0.324943 TTGCTCAGTGACTTAGGCCC 59.675 55.000 0.00 0.00 0.00 5.80
104 107 1.222113 GCTCAGTGACTTAGGCCCC 59.778 63.158 0.00 0.00 0.00 5.80
105 108 1.517832 CTCAGTGACTTAGGCCCCG 59.482 63.158 0.00 0.00 0.00 5.73
106 109 1.229082 TCAGTGACTTAGGCCCCGT 60.229 57.895 0.00 0.00 0.00 5.28
107 110 0.834687 TCAGTGACTTAGGCCCCGTT 60.835 55.000 0.00 0.00 0.00 4.44
108 111 0.391263 CAGTGACTTAGGCCCCGTTC 60.391 60.000 0.00 0.00 0.00 3.95
109 112 1.447314 GTGACTTAGGCCCCGTTCG 60.447 63.158 0.00 0.00 0.00 3.95
110 113 2.186125 GACTTAGGCCCCGTTCGG 59.814 66.667 0.00 4.08 0.00 4.30
111 114 2.284112 ACTTAGGCCCCGTTCGGA 60.284 61.111 13.08 0.00 0.00 4.55
112 115 1.683418 GACTTAGGCCCCGTTCGGAT 61.683 60.000 13.08 0.00 0.00 4.18
113 116 1.269703 ACTTAGGCCCCGTTCGGATT 61.270 55.000 13.08 0.00 0.00 3.01
114 117 0.532196 CTTAGGCCCCGTTCGGATTC 60.532 60.000 13.08 1.77 0.00 2.52
115 118 1.974973 TTAGGCCCCGTTCGGATTCC 61.975 60.000 13.08 9.90 0.00 3.01
116 119 4.870012 GGCCCCGTTCGGATTCCC 62.870 72.222 13.08 3.69 0.00 3.97
117 120 3.793888 GCCCCGTTCGGATTCCCT 61.794 66.667 13.08 0.00 0.00 4.20
118 121 2.504519 CCCCGTTCGGATTCCCTC 59.495 66.667 13.08 0.00 0.00 4.30
119 122 2.504519 CCCGTTCGGATTCCCTCC 59.495 66.667 13.08 0.00 41.07 4.30
120 123 2.504519 CCGTTCGGATTCCCTCCC 59.495 66.667 5.19 0.00 41.49 4.30
121 124 2.363975 CCGTTCGGATTCCCTCCCA 61.364 63.158 5.19 0.00 41.49 4.37
122 125 1.153429 CGTTCGGATTCCCTCCCAC 60.153 63.158 0.00 0.00 41.49 4.61
123 126 1.614241 CGTTCGGATTCCCTCCCACT 61.614 60.000 0.00 0.00 41.49 4.00
124 127 0.178301 GTTCGGATTCCCTCCCACTC 59.822 60.000 0.00 0.00 41.49 3.51
125 128 0.981277 TTCGGATTCCCTCCCACTCC 60.981 60.000 0.00 0.00 41.49 3.85
126 129 2.444256 CGGATTCCCTCCCACTCCC 61.444 68.421 0.00 0.00 41.49 4.30
127 130 2.079288 GGATTCCCTCCCACTCCCC 61.079 68.421 0.00 0.00 38.19 4.81
128 131 1.307866 GATTCCCTCCCACTCCCCA 60.308 63.158 0.00 0.00 0.00 4.96
129 132 0.919289 GATTCCCTCCCACTCCCCAA 60.919 60.000 0.00 0.00 0.00 4.12
130 133 1.214992 ATTCCCTCCCACTCCCCAAC 61.215 60.000 0.00 0.00 0.00 3.77
131 134 2.204151 CCCTCCCACTCCCCAACT 60.204 66.667 0.00 0.00 0.00 3.16
132 135 2.301738 CCCTCCCACTCCCCAACTC 61.302 68.421 0.00 0.00 0.00 3.01
133 136 2.301738 CCTCCCACTCCCCAACTCC 61.302 68.421 0.00 0.00 0.00 3.85
134 137 2.606519 TCCCACTCCCCAACTCCG 60.607 66.667 0.00 0.00 0.00 4.63
135 138 4.410400 CCCACTCCCCAACTCCGC 62.410 72.222 0.00 0.00 0.00 5.54
136 139 3.322466 CCACTCCCCAACTCCGCT 61.322 66.667 0.00 0.00 0.00 5.52
137 140 2.266055 CACTCCCCAACTCCGCTC 59.734 66.667 0.00 0.00 0.00 5.03
138 141 2.203788 ACTCCCCAACTCCGCTCA 60.204 61.111 0.00 0.00 0.00 4.26
139 142 1.613630 ACTCCCCAACTCCGCTCAT 60.614 57.895 0.00 0.00 0.00 2.90
140 143 1.153289 CTCCCCAACTCCGCTCATG 60.153 63.158 0.00 0.00 0.00 3.07
141 144 2.825836 CCCCAACTCCGCTCATGC 60.826 66.667 0.00 0.00 0.00 4.06
142 145 2.046023 CCCAACTCCGCTCATGCA 60.046 61.111 0.00 0.00 39.64 3.96
143 146 2.110967 CCCAACTCCGCTCATGCAG 61.111 63.158 0.00 0.00 39.64 4.41
144 147 2.758089 CCAACTCCGCTCATGCAGC 61.758 63.158 0.00 6.98 45.85 5.25
145 148 2.437359 AACTCCGCTCATGCAGCC 60.437 61.111 10.34 0.00 46.74 4.85
146 149 3.258228 AACTCCGCTCATGCAGCCA 62.258 57.895 10.34 0.00 46.74 4.75
147 150 2.203167 CTCCGCTCATGCAGCCAT 60.203 61.111 10.34 0.00 46.74 4.40
148 151 1.070275 CTCCGCTCATGCAGCCATA 59.930 57.895 10.34 0.00 46.74 2.74
149 152 0.533531 CTCCGCTCATGCAGCCATAA 60.534 55.000 10.34 0.00 46.74 1.90
150 153 0.109153 TCCGCTCATGCAGCCATAAT 59.891 50.000 10.34 0.00 46.74 1.28
151 154 0.520404 CCGCTCATGCAGCCATAATC 59.480 55.000 10.34 0.00 46.74 1.75
152 155 1.520494 CGCTCATGCAGCCATAATCT 58.480 50.000 10.34 0.00 46.74 2.40
153 156 1.197036 CGCTCATGCAGCCATAATCTG 59.803 52.381 10.34 0.00 46.74 2.90
154 157 2.501261 GCTCATGCAGCCATAATCTGA 58.499 47.619 0.00 0.00 43.17 3.27
155 158 2.484651 GCTCATGCAGCCATAATCTGAG 59.515 50.000 4.22 4.22 43.17 3.35
156 159 3.075148 CTCATGCAGCCATAATCTGAGG 58.925 50.000 0.00 0.00 33.54 3.86
157 160 2.707257 TCATGCAGCCATAATCTGAGGA 59.293 45.455 0.00 0.00 33.54 3.71
158 161 2.924757 TGCAGCCATAATCTGAGGAG 57.075 50.000 0.00 0.00 33.54 3.69
159 162 2.121948 TGCAGCCATAATCTGAGGAGT 58.878 47.619 0.00 0.00 33.54 3.85
160 163 2.158856 TGCAGCCATAATCTGAGGAGTG 60.159 50.000 0.00 0.00 33.54 3.51
161 164 2.809665 GCAGCCATAATCTGAGGAGTGG 60.810 54.545 0.00 0.00 33.54 4.00
162 165 1.419387 AGCCATAATCTGAGGAGTGGC 59.581 52.381 14.51 14.51 43.01 5.01
163 166 1.419387 GCCATAATCTGAGGAGTGGCT 59.581 52.381 14.86 0.00 41.26 4.75
164 167 2.634940 GCCATAATCTGAGGAGTGGCTA 59.365 50.000 14.86 0.00 41.26 3.93
165 168 3.306641 GCCATAATCTGAGGAGTGGCTAG 60.307 52.174 14.86 0.00 41.26 3.42
166 169 4.155709 CCATAATCTGAGGAGTGGCTAGA 58.844 47.826 0.00 0.00 0.00 2.43
167 170 4.590647 CCATAATCTGAGGAGTGGCTAGAA 59.409 45.833 0.00 0.00 0.00 2.10
168 171 5.248020 CCATAATCTGAGGAGTGGCTAGAAT 59.752 44.000 0.00 0.00 0.00 2.40
169 172 4.686191 AATCTGAGGAGTGGCTAGAATG 57.314 45.455 0.00 0.00 0.00 2.67
170 173 3.388552 TCTGAGGAGTGGCTAGAATGA 57.611 47.619 0.00 0.00 0.00 2.57
171 174 3.027412 TCTGAGGAGTGGCTAGAATGAC 58.973 50.000 0.00 0.00 0.00 3.06
172 175 1.751351 TGAGGAGTGGCTAGAATGACG 59.249 52.381 0.00 0.00 0.00 4.35
173 176 0.461961 AGGAGTGGCTAGAATGACGC 59.538 55.000 0.00 0.00 0.00 5.19
174 177 0.461961 GGAGTGGCTAGAATGACGCT 59.538 55.000 0.00 0.00 38.71 5.07
175 178 1.846541 GAGTGGCTAGAATGACGCTC 58.153 55.000 0.00 0.00 44.04 5.03
176 179 0.461961 AGTGGCTAGAATGACGCTCC 59.538 55.000 0.00 0.00 28.06 4.70
177 180 0.530870 GTGGCTAGAATGACGCTCCC 60.531 60.000 0.00 0.00 0.00 4.30
178 181 1.069935 GGCTAGAATGACGCTCCCC 59.930 63.158 0.00 0.00 0.00 4.81
179 182 1.300233 GCTAGAATGACGCTCCCCG 60.300 63.158 0.00 0.00 44.21 5.73
180 183 1.300233 CTAGAATGACGCTCCCCGC 60.300 63.158 0.00 0.00 41.76 6.13
207 210 4.087892 CGCAGTGGGGGAGTGGAG 62.088 72.222 0.00 0.00 0.00 3.86
208 211 3.721706 GCAGTGGGGGAGTGGAGG 61.722 72.222 0.00 0.00 0.00 4.30
209 212 3.011517 CAGTGGGGGAGTGGAGGG 61.012 72.222 0.00 0.00 0.00 4.30
210 213 3.542602 AGTGGGGGAGTGGAGGGT 61.543 66.667 0.00 0.00 0.00 4.34
211 214 2.531942 GTGGGGGAGTGGAGGGTT 60.532 66.667 0.00 0.00 0.00 4.11
212 215 2.531685 TGGGGGAGTGGAGGGTTG 60.532 66.667 0.00 0.00 0.00 3.77
213 216 4.048470 GGGGGAGTGGAGGGTTGC 62.048 72.222 0.00 0.00 0.00 4.17
214 217 4.048470 GGGGAGTGGAGGGTTGCC 62.048 72.222 0.00 0.00 0.00 4.52
215 218 4.048470 GGGAGTGGAGGGTTGCCC 62.048 72.222 0.00 0.00 45.90 5.36
316 320 8.335532 TGTTGCTTGCTAAATAGTTTAGTGAT 57.664 30.769 10.22 0.00 43.52 3.06
331 335 8.433421 AGTTTAGTGATTGGATATTAACCACG 57.567 34.615 0.00 0.00 37.13 4.94
484 492 9.621629 TTTTCCTCATTCAGTAGTTTCTTGTTA 57.378 29.630 0.00 0.00 0.00 2.41
510 518 9.905713 AATGAAAAGCTAGATTATCCAGTAACA 57.094 29.630 0.00 0.00 0.00 2.41
512 520 9.905713 TGAAAAGCTAGATTATCCAGTAACATT 57.094 29.630 0.00 0.00 0.00 2.71
559 572 6.000219 ACATCTAGCTGACATGTTGACTTTT 59.000 36.000 0.00 0.00 0.00 2.27
583 596 5.416083 TCACTGATTGACCTTACCGTAATG 58.584 41.667 0.00 0.00 0.00 1.90
847 1025 3.039252 ACTCTGACCTGGCTAGCTTAT 57.961 47.619 15.72 0.00 0.00 1.73
848 1026 2.962421 ACTCTGACCTGGCTAGCTTATC 59.038 50.000 15.72 8.13 0.00 1.75
849 1027 3.230134 CTCTGACCTGGCTAGCTTATCT 58.770 50.000 15.72 0.00 0.00 1.98
870 1048 1.342496 CTGTCAGTCAGAGTCTTGGCA 59.658 52.381 0.00 0.00 46.27 4.92
947 1125 0.698238 TAGCTGTTGGTGCATTCCCT 59.302 50.000 0.00 0.00 0.00 4.20
1030 1209 5.693814 CAGTAAACTGCACTCTTCAAATCC 58.306 41.667 0.00 0.00 37.15 3.01
1428 1607 2.213499 CACGACCAGAGAAGCAAAACT 58.787 47.619 0.00 0.00 0.00 2.66
1503 1682 1.603739 GGGCAAGAACCTGTGGACC 60.604 63.158 0.00 0.00 0.00 4.46
1689 1868 2.905880 CCGGAGGCCTCGACGTAT 60.906 66.667 26.36 0.00 46.14 3.06
1708 1887 3.864686 CGCACGATTTCCCGCTGG 61.865 66.667 0.00 0.00 0.00 4.85
1737 1916 1.338484 GCCAGCAAGTCAGAGATCACA 60.338 52.381 0.00 0.00 0.00 3.58
1863 2042 1.500783 CCTTCTTCCAGGGGCCAAGA 61.501 60.000 4.39 2.39 0.00 3.02
1905 2084 3.078196 TGCGGGGCATTCGGTCTA 61.078 61.111 0.00 0.00 31.71 2.59
1958 2137 2.115910 CTGCCTGCAGGGGTTCAA 59.884 61.111 33.46 7.35 40.17 2.69
2061 2240 1.741770 GACAGCGACGGATGGCTTT 60.742 57.895 0.00 0.00 37.90 3.51
2070 2249 1.885871 GGATGGCTTTGTGCTGGTC 59.114 57.895 0.00 0.00 42.39 4.02
2094 2273 2.031163 GTGAAGCTGCCCGACACT 59.969 61.111 0.00 0.00 0.00 3.55
2102 2281 2.338984 GCCCGACACTCAGAACGT 59.661 61.111 0.00 0.00 0.00 3.99
2112 2291 0.243907 CTCAGAACGTGTCGGTGGAT 59.756 55.000 0.00 0.00 0.00 3.41
2114 2293 2.097036 TCAGAACGTGTCGGTGGATAT 58.903 47.619 0.00 0.00 0.00 1.63
2124 2303 1.541588 TCGGTGGATATGAGCATCTCG 59.458 52.381 0.00 0.00 34.92 4.04
2141 2320 2.680352 GACGGAGGAGTGCAGGGA 60.680 66.667 0.00 0.00 0.00 4.20
2150 2329 0.543749 GAGTGCAGGGATAGGTGCTT 59.456 55.000 0.00 0.00 40.54 3.91
2163 2342 2.669569 TGCTTCGCCAACTGCTCC 60.670 61.111 0.00 0.00 38.05 4.70
2167 2346 4.704833 TCGCCAACTGCTCCTGCC 62.705 66.667 0.00 0.00 38.71 4.85
2172 2351 3.255397 AACTGCTCCTGCCTGGCT 61.255 61.111 21.03 0.00 38.71 4.75
2178 2357 3.315142 CTCCTGCCTGGCTTACGCA 62.315 63.158 21.03 0.00 38.10 5.24
2181 2360 2.124736 TGCCTGGCTTACGCATCC 60.125 61.111 21.03 0.00 38.10 3.51
2184 2363 2.202932 CTGGCTTACGCATCCGCT 60.203 61.111 0.00 0.00 38.22 5.52
2202 2381 0.103937 CTGAGATCCGAGAAGGTGGC 59.896 60.000 0.00 0.00 41.99 5.01
2229 2414 0.179156 GTGGCTGCATCATTTGGACG 60.179 55.000 0.50 0.00 0.00 4.79
2236 2421 1.950484 GCATCATTTGGACGGGTGACT 60.950 52.381 0.00 0.00 0.00 3.41
2241 2426 0.179040 TTTGGACGGGTGACTTGGTC 60.179 55.000 0.00 0.00 0.00 4.02
2250 2435 1.067776 GGTGACTTGGTCGATCTTCGT 60.068 52.381 0.00 0.00 41.35 3.85
2253 2438 3.607209 GTGACTTGGTCGATCTTCGTTAC 59.393 47.826 0.00 0.00 41.35 2.50
2256 2441 2.251869 TGGTCGATCTTCGTTACGTG 57.748 50.000 4.24 0.00 41.35 4.49
2291 2476 4.162690 GTACCTCAGGCTGGCCGG 62.163 72.222 15.73 7.41 41.95 6.13
2329 2527 4.946772 TGAAAACAATGACAGTCAACCTCA 59.053 37.500 7.50 2.62 0.00 3.86
2343 2541 7.041098 ACAGTCAACCTCATTTTTCAGTACATC 60.041 37.037 0.00 0.00 0.00 3.06
2347 2545 7.502226 TCAACCTCATTTTTCAGTACATCAGTT 59.498 33.333 0.00 0.00 0.00 3.16
2348 2546 7.440523 ACCTCATTTTTCAGTACATCAGTTC 57.559 36.000 0.00 0.00 0.00 3.01
2356 2554 3.324846 TCAGTACATCAGTTCACTGGCTT 59.675 43.478 7.11 0.00 43.91 4.35
2357 2555 4.067896 CAGTACATCAGTTCACTGGCTTT 58.932 43.478 7.11 0.00 43.91 3.51
2359 2557 5.349817 CAGTACATCAGTTCACTGGCTTTAG 59.650 44.000 7.11 0.00 43.91 1.85
2360 2558 3.679389 ACATCAGTTCACTGGCTTTAGG 58.321 45.455 7.11 0.00 43.91 2.69
2361 2559 2.185004 TCAGTTCACTGGCTTTAGGC 57.815 50.000 7.11 0.00 43.91 3.93
2385 2599 3.160679 AGCTTTAAGGGTTGACTGCAT 57.839 42.857 0.00 0.00 0.00 3.96
2386 2600 2.821969 AGCTTTAAGGGTTGACTGCATG 59.178 45.455 0.00 0.00 0.00 4.06
2391 2605 2.119801 AGGGTTGACTGCATGATCAC 57.880 50.000 0.00 0.00 0.00 3.06
2394 2608 1.470098 GGTTGACTGCATGATCACACC 59.530 52.381 0.00 4.24 0.00 4.16
2395 2609 2.153645 GTTGACTGCATGATCACACCA 58.846 47.619 0.00 0.00 0.00 4.17
2397 2611 2.153645 TGACTGCATGATCACACCAAC 58.846 47.619 0.00 0.00 0.00 3.77
2399 2613 2.553602 GACTGCATGATCACACCAACAA 59.446 45.455 0.00 0.00 0.00 2.83
2400 2614 2.555325 ACTGCATGATCACACCAACAAG 59.445 45.455 0.00 0.00 0.00 3.16
2401 2615 2.555325 CTGCATGATCACACCAACAAGT 59.445 45.455 0.00 0.00 0.00 3.16
2402 2616 3.749226 TGCATGATCACACCAACAAGTA 58.251 40.909 0.00 0.00 0.00 2.24
2403 2617 4.334552 TGCATGATCACACCAACAAGTAT 58.665 39.130 0.00 0.00 0.00 2.12
2405 2619 5.243507 TGCATGATCACACCAACAAGTATTT 59.756 36.000 0.00 0.00 0.00 1.40
2406 2620 6.158598 GCATGATCACACCAACAAGTATTTT 58.841 36.000 0.00 0.00 0.00 1.82
2407 2621 6.308766 GCATGATCACACCAACAAGTATTTTC 59.691 38.462 0.00 0.00 0.00 2.29
2413 2665 7.703328 TCACACCAACAAGTATTTTCTTCTTC 58.297 34.615 0.00 0.00 0.00 2.87
2419 2671 9.665264 CCAACAAGTATTTTCTTCTTCTGTAAC 57.335 33.333 0.00 0.00 0.00 2.50
2424 2676 8.316640 AGTATTTTCTTCTTCTGTAACAGCTG 57.683 34.615 13.48 13.48 0.00 4.24
2433 2685 1.267806 CTGTAACAGCTGTGCCAAAGG 59.732 52.381 22.49 4.88 0.00 3.11
2450 2702 2.789409 AGGGCTCGAAGTTTGCTATT 57.211 45.000 0.00 0.00 0.00 1.73
2452 2704 1.202188 GGGCTCGAAGTTTGCTATTGC 60.202 52.381 0.00 0.00 40.20 3.56
2468 2720 4.430423 GCGACTGTTCTTGCGCCG 62.430 66.667 4.18 0.00 43.33 6.46
2498 2750 5.047847 TCCGCTGTTGCTATAATACTTGTC 58.952 41.667 0.00 0.00 36.97 3.18
2504 2756 8.879759 GCTGTTGCTATAATACTTGTCTTGTTA 58.120 33.333 0.00 0.00 36.03 2.41
2533 2788 0.035881 TGCTGGAGAAGGAAGCACAG 59.964 55.000 0.00 0.00 41.83 3.66
2534 2789 0.322975 GCTGGAGAAGGAAGCACAGA 59.677 55.000 0.00 0.00 36.91 3.41
2542 2797 2.376808 AGGAAGCACAGAATCTCACG 57.623 50.000 0.00 0.00 0.00 4.35
2574 2829 0.248539 CGGTACTCTGCCGTAGCTTC 60.249 60.000 0.00 0.00 43.84 3.86
2578 2833 3.318557 GGTACTCTGCCGTAGCTTCTAAT 59.681 47.826 0.00 0.00 40.80 1.73
2581 2836 3.316868 ACTCTGCCGTAGCTTCTAATCTC 59.683 47.826 0.00 0.00 40.80 2.75
2595 2851 9.574516 AGCTTCTAATCTCTTTGTTTTTCCTAA 57.425 29.630 0.00 0.00 0.00 2.69
2604 2860 8.349983 TCTCTTTGTTTTTCCTAATACACTTGC 58.650 33.333 0.00 0.00 0.00 4.01
2605 2861 8.001881 TCTTTGTTTTTCCTAATACACTTGCA 57.998 30.769 0.00 0.00 0.00 4.08
2607 2863 9.906660 CTTTGTTTTTCCTAATACACTTGCATA 57.093 29.630 0.00 0.00 0.00 3.14
2624 2884 4.765273 TGCATAAATCTAACTCGGCTCAA 58.235 39.130 0.00 0.00 0.00 3.02
2626 2886 5.064707 TGCATAAATCTAACTCGGCTCAAAC 59.935 40.000 0.00 0.00 0.00 2.93
2633 2893 0.322975 ACTCGGCTCAAACTGCAGAT 59.677 50.000 23.35 5.41 34.50 2.90
2634 2894 0.725686 CTCGGCTCAAACTGCAGATG 59.274 55.000 23.35 18.40 34.50 2.90
2636 2896 0.957395 CGGCTCAAACTGCAGATGGT 60.957 55.000 23.35 0.00 0.00 3.55
2669 2929 1.751351 TCAGCTATGACAGTTCCCTCG 59.249 52.381 0.00 0.00 0.00 4.63
2687 2947 2.164422 CTCGGTTGATCTGCACACTCTA 59.836 50.000 0.00 0.00 0.00 2.43
2691 2951 3.686726 GGTTGATCTGCACACTCTAAAGG 59.313 47.826 0.00 0.00 0.00 3.11
2700 2960 3.851098 CACACTCTAAAGGAGGCTACAC 58.149 50.000 0.00 0.00 45.83 2.90
2716 2976 4.109050 GCTACACTGAATTTCTCCGAGAG 58.891 47.826 0.00 0.00 0.00 3.20
2738 2998 2.025981 CCATGTGATTGGTCAAGGAGGA 60.026 50.000 0.00 0.00 35.80 3.71
2760 3020 6.062095 GGATTTGGCATAGTGTATAAGGTGT 58.938 40.000 0.00 0.00 0.00 4.16
2781 3041 1.662044 GCGCATCCATTTGATCCCC 59.338 57.895 0.30 0.00 0.00 4.81
2782 3042 0.825010 GCGCATCCATTTGATCCCCT 60.825 55.000 0.30 0.00 0.00 4.79
2783 3043 1.242076 CGCATCCATTTGATCCCCTC 58.758 55.000 0.00 0.00 0.00 4.30
2784 3044 1.477377 CGCATCCATTTGATCCCCTCA 60.477 52.381 0.00 0.00 0.00 3.86
2785 3045 2.816712 CGCATCCATTTGATCCCCTCAT 60.817 50.000 0.00 0.00 32.72 2.90
2787 3047 3.428532 CATCCATTTGATCCCCTCATCC 58.571 50.000 0.00 0.00 32.72 3.51
2788 3048 2.501667 TCCATTTGATCCCCTCATCCA 58.498 47.619 0.00 0.00 32.72 3.41
2789 3049 2.858133 TCCATTTGATCCCCTCATCCAA 59.142 45.455 0.00 0.00 32.72 3.53
2790 3050 3.468244 TCCATTTGATCCCCTCATCCAAT 59.532 43.478 0.00 0.00 32.72 3.16
2793 3053 5.840149 CCATTTGATCCCCTCATCCAATTAA 59.160 40.000 0.00 0.00 32.72 1.40
2794 3054 6.327104 CCATTTGATCCCCTCATCCAATTAAA 59.673 38.462 0.00 0.00 32.72 1.52
2795 3055 7.147514 CCATTTGATCCCCTCATCCAATTAAAA 60.148 37.037 0.00 0.00 32.72 1.52
2796 3056 7.805083 TTTGATCCCCTCATCCAATTAAAAA 57.195 32.000 0.00 0.00 32.72 1.94
2797 3057 7.422465 TTGATCCCCTCATCCAATTAAAAAG 57.578 36.000 0.00 0.00 32.72 2.27
2798 3058 6.740693 TGATCCCCTCATCCAATTAAAAAGA 58.259 36.000 0.00 0.00 0.00 2.52
2799 3059 7.188381 TGATCCCCTCATCCAATTAAAAAGAA 58.812 34.615 0.00 0.00 0.00 2.52
2801 3061 8.628368 ATCCCCTCATCCAATTAAAAAGAATT 57.372 30.769 0.00 0.00 0.00 2.17
2802 3062 8.448068 TCCCCTCATCCAATTAAAAAGAATTT 57.552 30.769 0.00 0.00 42.41 1.82
2855 3172 3.478780 TGGTACACTCACCAGGGC 58.521 61.111 0.00 0.00 43.76 5.19
2882 3199 0.389817 CTGACGGGAGAACGATTGCA 60.390 55.000 0.00 0.00 37.61 4.08
2902 3219 1.277557 AGTGAAGAGGCTTAGGCAGTG 59.722 52.381 8.84 0.00 40.87 3.66
2912 3229 4.810159 GCTTAGGCAGTGTGCTCTCACA 62.810 54.545 0.00 0.00 44.28 3.58
2921 3238 0.877743 GTGCTCTCACAAGGAAAGGC 59.122 55.000 0.00 0.00 42.66 4.35
2930 3247 1.000274 ACAAGGAAAGGCAAATGCGAC 60.000 47.619 0.00 0.00 43.26 5.19
2934 3251 1.606606 GAAAGGCAAATGCGACTTCG 58.393 50.000 0.00 0.00 43.26 3.79
2964 3281 2.611800 AGGTGATGGCCAGGCTCA 60.612 61.111 13.05 7.64 0.00 4.26
2979 3296 0.680921 GCTCAGGCATGGCAACCTTA 60.681 55.000 22.64 2.10 38.54 2.69
2987 3304 1.334869 CATGGCAACCTTATTCGCCTC 59.665 52.381 0.00 0.00 45.13 4.70
2993 3310 0.107165 ACCTTATTCGCCTCCTTGCC 60.107 55.000 0.00 0.00 0.00 4.52
2999 3316 1.192146 TTCGCCTCCTTGCCTACTGT 61.192 55.000 0.00 0.00 0.00 3.55
3023 3340 2.359531 CGAAGGCGAAGAGAGGATACTT 59.640 50.000 0.00 0.00 45.42 2.24
3053 3370 0.610232 ACATGCCCAACAAGAGCCTC 60.610 55.000 0.00 0.00 0.00 4.70
3100 3444 1.024271 TGCACAACTTGTCTTGCCTC 58.976 50.000 0.00 0.00 33.86 4.70
3116 3460 6.038050 GTCTTGCCTCTTATCAGAATTTGGAG 59.962 42.308 0.00 0.00 0.00 3.86
3145 3497 8.560124 AATAGATCATTAGGTTCTCCTCTGTT 57.440 34.615 0.00 0.00 43.94 3.16
3237 3589 1.988956 CTGAGCTGGAGGCAGAGGT 60.989 63.158 0.00 0.00 44.79 3.85
3260 3612 2.553602 GGATATCATCAACGGCATTGCA 59.446 45.455 11.39 0.00 38.29 4.08
3314 3666 1.154188 GAGCGTCGTCCACAGAGAC 60.154 63.158 0.00 0.00 0.00 3.36
3341 3693 2.160417 GCTTCAAAACGTGCTGCTAGAT 59.840 45.455 0.00 0.00 0.00 1.98
3371 3723 2.200337 GGCCAAGGTTGCGGACTTT 61.200 57.895 0.00 0.00 0.00 2.66
3466 3818 7.117236 CACTCTACTCTACTCTCCGTTCATATC 59.883 44.444 0.00 0.00 0.00 1.63
3500 3852 6.901699 TTTTTGTTTCGTTTGCAAATGTTG 57.098 29.167 26.39 12.76 33.00 3.33
3501 3853 4.590400 TTGTTTCGTTTGCAAATGTTGG 57.410 36.364 26.39 10.12 0.00 3.77
3530 3884 5.163814 GCTCAGATGATTTTACTGGTGTGTC 60.164 44.000 0.00 0.00 33.19 3.67
3640 3998 1.403323 GTGCTGCTGGAAATCCTTAGC 59.597 52.381 0.00 12.88 37.40 3.09
3643 4001 0.107214 TGCTGGAAATCCTTAGCGGG 60.107 55.000 0.44 0.00 38.96 6.13
3652 4010 0.623723 TCCTTAGCGGGCAAAGGAAT 59.376 50.000 1.37 0.00 46.43 3.01
3675 4033 2.062070 AGACGCAGAGGCTCCTTTT 58.938 52.632 11.71 0.00 25.16 2.27
3699 4057 5.942872 ACATGTAAGTAGAAACTGCATTGC 58.057 37.500 0.00 0.46 35.62 3.56
3746 4104 8.230486 GCCGTATCTCATGAAAATTATGTTAGG 58.770 37.037 0.00 0.00 0.00 2.69
3802 4160 0.962356 AGCAGGACAGGAAAATGGCG 60.962 55.000 0.00 0.00 0.00 5.69
3805 4163 0.678048 AGGACAGGAAAATGGCGCTC 60.678 55.000 7.64 0.00 0.00 5.03
3812 4170 1.066152 GGAAAATGGCGCTCCTTGATC 59.934 52.381 7.64 0.00 0.00 2.92
3838 4196 0.266152 TGAATCTCCCTCCCCTCTCC 59.734 60.000 0.00 0.00 0.00 3.71
3889 4247 1.674962 GAGAGGTGCATTCAGATTGGC 59.325 52.381 0.00 0.00 0.00 4.52
3937 4295 3.092511 AGGCCGGCCATGTCTGAT 61.093 61.111 45.13 21.51 38.92 2.90
3942 4300 0.677731 CCGGCCATGTCTGATGTTGT 60.678 55.000 2.24 0.00 0.00 3.32
3946 4304 1.441738 CCATGTCTGATGTTGTCGCA 58.558 50.000 0.00 0.00 0.00 5.10
3947 4305 1.395954 CCATGTCTGATGTTGTCGCAG 59.604 52.381 0.00 0.00 0.00 5.18
3978 4336 0.453793 AAGACCTCACAGATCGCTCG 59.546 55.000 0.00 0.00 0.00 5.03
3988 4346 4.473520 ATCGCTCGGCCCAACAGG 62.474 66.667 0.00 0.00 39.47 4.00
4000 4358 1.544759 CCCAACAGGCCCGGAATATAC 60.545 57.143 0.73 0.00 0.00 1.47
4004 4362 1.142262 ACAGGCCCGGAATATACAACC 59.858 52.381 0.73 0.00 0.00 3.77
4005 4363 1.142060 CAGGCCCGGAATATACAACCA 59.858 52.381 0.73 0.00 0.00 3.67
4006 4364 1.847737 AGGCCCGGAATATACAACCAA 59.152 47.619 0.73 0.00 0.00 3.67
4046 4404 0.551396 TCAGGCGGATCTCACTAGGA 59.449 55.000 0.00 0.00 0.00 2.94
4053 4411 2.159226 CGGATCTCACTAGGACCACAAC 60.159 54.545 0.00 0.00 0.00 3.32
4054 4412 2.159226 GGATCTCACTAGGACCACAACG 60.159 54.545 0.00 0.00 0.00 4.10
4102 4473 7.389232 TGAAATCAGAGTTTAGAAGAGCATGA 58.611 34.615 0.00 0.00 0.00 3.07
4133 4504 6.863126 CCAAGTGAGCTCATTTTTCGTTTATT 59.137 34.615 21.47 0.00 0.00 1.40
4179 4550 7.148641 AGCGTATTCGAAGATGAAGATATGTT 58.851 34.615 15.91 0.00 39.71 2.71
4286 4662 4.981806 ATGCTGGCATTAAAATGTACGT 57.018 36.364 1.86 0.00 38.65 3.57
4287 4663 6.443934 AATGCTGGCATTAAAATGTACGTA 57.556 33.333 17.70 0.00 43.92 3.57
4318 4694 6.348050 GCGATCTCTTCTCACAGTTTGAATTT 60.348 38.462 0.00 0.00 32.21 1.82
4319 4695 7.014115 CGATCTCTTCTCACAGTTTGAATTTG 58.986 38.462 0.00 0.00 32.21 2.32
4320 4696 6.624352 TCTCTTCTCACAGTTTGAATTTGG 57.376 37.500 0.00 0.00 32.21 3.28
4321 4697 5.532406 TCTCTTCTCACAGTTTGAATTTGGG 59.468 40.000 0.00 0.00 32.21 4.12
4322 4698 4.037923 TCTTCTCACAGTTTGAATTTGGGC 59.962 41.667 0.00 0.00 32.21 5.36
4325 4701 3.030291 TCACAGTTTGAATTTGGGCTGT 58.970 40.909 0.00 0.00 37.63 4.40
4326 4702 3.450457 TCACAGTTTGAATTTGGGCTGTT 59.550 39.130 0.00 0.00 35.34 3.16
4328 4704 4.744631 CACAGTTTGAATTTGGGCTGTTAC 59.255 41.667 0.00 0.00 35.34 2.50
4330 4706 5.830991 ACAGTTTGAATTTGGGCTGTTACTA 59.169 36.000 0.00 0.00 34.02 1.82
4369 4794 3.882888 TGAATAATCGAGGGGAAACATGC 59.117 43.478 0.00 0.00 0.00 4.06
4483 4933 3.899980 TCTCGGGATCATCAGTTCATCAT 59.100 43.478 0.00 0.00 0.00 2.45
4527 4983 0.251165 ACGGTTGTCCTGGAAATGGG 60.251 55.000 0.00 0.00 0.00 4.00
4554 5010 3.057315 TGCAGCTTTTAATCCAGAGCAAC 60.057 43.478 0.00 0.00 37.59 4.17
4556 5012 4.673841 GCAGCTTTTAATCCAGAGCAACTC 60.674 45.833 0.00 0.00 37.59 3.01
4563 5019 4.363991 AATCCAGAGCAACTCAGAGTTT 57.636 40.909 13.53 0.00 36.03 2.66
4564 5020 3.845781 TCCAGAGCAACTCAGAGTTTT 57.154 42.857 13.53 4.98 36.03 2.43
4565 5021 3.733337 TCCAGAGCAACTCAGAGTTTTC 58.267 45.455 13.53 13.47 36.03 2.29
4566 5022 3.389329 TCCAGAGCAACTCAGAGTTTTCT 59.611 43.478 13.53 15.34 36.03 2.52
4612 5068 8.852135 ACACTATCAAAATAGCTACTACCTCTC 58.148 37.037 0.00 0.00 38.81 3.20
4625 5081 6.407525 GCTACTACCTCTCTTCCAATGAACAT 60.408 42.308 0.00 0.00 0.00 2.71
4627 5083 6.784031 ACTACCTCTCTTCCAATGAACATTT 58.216 36.000 0.00 0.00 0.00 2.32
4632 5095 9.093458 ACCTCTCTTCCAATGAACATTTAAAAT 57.907 29.630 0.00 0.00 0.00 1.82
4633 5096 9.933723 CCTCTCTTCCAATGAACATTTAAAATT 57.066 29.630 0.00 0.00 0.00 1.82
4702 5169 3.506810 CGGCAAACTTGACACTGAAAAA 58.493 40.909 0.00 0.00 35.35 1.94
4707 5174 5.389411 GCAAACTTGACACTGAAAAACAACC 60.389 40.000 0.00 0.00 0.00 3.77
4715 5182 5.474825 ACACTGAAAAACAACCGTTCAAAT 58.525 33.333 0.00 0.00 32.91 2.32
4747 5223 9.599866 TGTGATGAAGACGAAAATTATGTAGAT 57.400 29.630 0.00 0.00 0.00 1.98
4784 5260 8.989653 TCGTTTTTCTTTTGACCTAACAAAAT 57.010 26.923 0.00 0.00 44.79 1.82
4804 5280 0.677288 TCACATCGTCGGTTCAACCT 59.323 50.000 4.68 0.00 35.66 3.50
4806 5282 1.871039 CACATCGTCGGTTCAACCTTT 59.129 47.619 4.68 0.00 35.66 3.11
4807 5283 2.289547 CACATCGTCGGTTCAACCTTTT 59.710 45.455 4.68 0.00 35.66 2.27
4838 5314 0.762418 TTCTTTCGTCTGCCCCTTCA 59.238 50.000 0.00 0.00 0.00 3.02
4839 5315 0.321671 TCTTTCGTCTGCCCCTTCAG 59.678 55.000 0.00 0.00 35.46 3.02
4844 5320 4.975490 TCTGCCCCTTCAGACTCA 57.025 55.556 0.00 0.00 38.11 3.41
4848 5324 0.471780 TGCCCCTTCAGACTCACTCA 60.472 55.000 0.00 0.00 0.00 3.41
4850 5326 1.342074 CCCCTTCAGACTCACTCACA 58.658 55.000 0.00 0.00 0.00 3.58
4853 5329 1.338337 CCTTCAGACTCACTCACACGT 59.662 52.381 0.00 0.00 0.00 4.49
4854 5330 2.389059 CTTCAGACTCACTCACACGTG 58.611 52.381 15.48 15.48 36.25 4.49
4855 5331 1.675552 TCAGACTCACTCACACGTGA 58.324 50.000 25.01 0.00 41.33 4.35
4856 5332 1.333931 TCAGACTCACTCACACGTGAC 59.666 52.381 25.01 1.98 38.89 3.67
4857 5333 0.669077 AGACTCACTCACACGTGACC 59.331 55.000 25.01 0.13 38.89 4.02
4858 5334 0.669077 GACTCACTCACACGTGACCT 59.331 55.000 25.01 0.00 38.89 3.85
4859 5335 1.067212 GACTCACTCACACGTGACCTT 59.933 52.381 25.01 0.00 38.89 3.50
4860 5336 1.067212 ACTCACTCACACGTGACCTTC 59.933 52.381 25.01 0.00 38.89 3.46
4873 5349 2.345991 CCTTCCCTTCCAACGCGA 59.654 61.111 15.93 0.00 0.00 5.87
4904 5404 4.452733 GCCGCCGCCTCAGTACTT 62.453 66.667 0.00 0.00 0.00 2.24
4970 5478 1.229529 TTCCCCTTCTTCCTCGCCT 60.230 57.895 0.00 0.00 0.00 5.52
4985 5493 2.041922 CCTCCCGGGACATCCTGA 60.042 66.667 22.63 0.00 45.36 3.86
4986 5494 1.460305 CCTCCCGGGACATCCTGAT 60.460 63.158 22.63 0.00 45.36 2.90
4987 5495 1.476007 CCTCCCGGGACATCCTGATC 61.476 65.000 22.63 0.00 45.36 2.92
4988 5496 1.459539 TCCCGGGACATCCTGATCC 60.460 63.158 22.63 0.00 45.36 3.36
4989 5497 1.460305 CCCGGGACATCCTGATCCT 60.460 63.158 18.48 0.00 45.36 3.24
4990 5498 1.750930 CCGGGACATCCTGATCCTG 59.249 63.158 8.42 0.00 45.36 3.86
4991 5499 1.070445 CGGGACATCCTGATCCTGC 59.930 63.158 0.00 0.00 45.36 4.85
4992 5500 1.689243 CGGGACATCCTGATCCTGCA 61.689 60.000 0.00 0.00 45.36 4.41
4993 5501 0.108207 GGGACATCCTGATCCTGCAG 59.892 60.000 6.78 6.78 35.15 4.41
4994 5502 0.534652 GGACATCCTGATCCTGCAGC 60.535 60.000 8.66 0.00 34.56 5.25
4995 5503 0.469070 GACATCCTGATCCTGCAGCT 59.531 55.000 8.66 0.00 34.56 4.24
4996 5504 1.690893 GACATCCTGATCCTGCAGCTA 59.309 52.381 8.66 0.00 34.56 3.32
4997 5505 1.415659 ACATCCTGATCCTGCAGCTAC 59.584 52.381 8.66 1.66 34.56 3.58
4998 5506 0.678395 ATCCTGATCCTGCAGCTACG 59.322 55.000 8.66 0.00 34.56 3.51
4999 5507 1.068753 CCTGATCCTGCAGCTACGG 59.931 63.158 8.66 6.18 34.56 4.02
5000 5508 1.395045 CCTGATCCTGCAGCTACGGA 61.395 60.000 8.66 0.05 34.56 4.69
5001 5509 0.249238 CTGATCCTGCAGCTACGGAC 60.249 60.000 8.66 0.00 0.00 4.79
5002 5510 0.684479 TGATCCTGCAGCTACGGACT 60.684 55.000 8.66 0.00 0.00 3.85
5003 5511 0.461961 GATCCTGCAGCTACGGACTT 59.538 55.000 8.66 0.00 0.00 3.01
5004 5512 0.461961 ATCCTGCAGCTACGGACTTC 59.538 55.000 8.66 0.00 0.00 3.01
5005 5513 1.517257 CCTGCAGCTACGGACTTCG 60.517 63.158 8.66 0.00 45.88 3.79
5006 5514 2.126071 TGCAGCTACGGACTTCGC 60.126 61.111 0.00 0.00 43.89 4.70
5007 5515 2.886124 GCAGCTACGGACTTCGCC 60.886 66.667 0.00 0.00 43.89 5.54
5008 5516 2.202756 CAGCTACGGACTTCGCCC 60.203 66.667 0.00 0.00 43.89 6.13
5009 5517 2.678934 AGCTACGGACTTCGCCCA 60.679 61.111 0.00 0.00 43.89 5.36
5010 5518 2.202756 GCTACGGACTTCGCCCAG 60.203 66.667 0.00 0.00 43.89 4.45
5011 5519 3.003113 GCTACGGACTTCGCCCAGT 62.003 63.158 0.00 0.00 43.89 4.00
5012 5520 1.139095 CTACGGACTTCGCCCAGTC 59.861 63.158 1.89 1.89 43.89 3.51
5016 5524 2.266055 GACTTCGCCCAGTCCCAG 59.734 66.667 0.00 0.00 37.78 4.45
5017 5525 2.526873 ACTTCGCCCAGTCCCAGT 60.527 61.111 0.00 0.00 0.00 4.00
5018 5526 2.266055 CTTCGCCCAGTCCCAGTC 59.734 66.667 0.00 0.00 0.00 3.51
5019 5527 2.203788 TTCGCCCAGTCCCAGTCT 60.204 61.111 0.00 0.00 0.00 3.24
5020 5528 1.831652 CTTCGCCCAGTCCCAGTCTT 61.832 60.000 0.00 0.00 0.00 3.01
5021 5529 1.415672 TTCGCCCAGTCCCAGTCTTT 61.416 55.000 0.00 0.00 0.00 2.52
5022 5530 1.672356 CGCCCAGTCCCAGTCTTTG 60.672 63.158 0.00 0.00 0.00 2.77
5024 5532 1.303643 CCCAGTCCCAGTCTTTGGC 60.304 63.158 0.00 0.00 46.32 4.52
5025 5533 1.303643 CCAGTCCCAGTCTTTGGCC 60.304 63.158 0.00 0.00 46.32 5.36
5026 5534 1.455849 CAGTCCCAGTCTTTGGCCA 59.544 57.895 0.00 0.00 46.32 5.36
5027 5535 0.038744 CAGTCCCAGTCTTTGGCCAT 59.961 55.000 6.09 0.00 46.32 4.40
5028 5536 0.779997 AGTCCCAGTCTTTGGCCATT 59.220 50.000 6.09 0.00 46.32 3.16
5029 5537 1.992557 AGTCCCAGTCTTTGGCCATTA 59.007 47.619 6.09 0.00 46.32 1.90
5030 5538 2.025887 AGTCCCAGTCTTTGGCCATTAG 60.026 50.000 6.09 7.77 46.32 1.73
5031 5539 1.284785 TCCCAGTCTTTGGCCATTAGG 59.715 52.381 6.09 3.05 46.32 2.69
5032 5540 1.284785 CCCAGTCTTTGGCCATTAGGA 59.715 52.381 6.09 0.00 46.32 2.94
5033 5541 2.091665 CCCAGTCTTTGGCCATTAGGAT 60.092 50.000 6.09 0.00 46.32 3.24
5034 5542 3.628257 CCCAGTCTTTGGCCATTAGGATT 60.628 47.826 6.09 0.00 46.32 3.01
5035 5543 3.382546 CCAGTCTTTGGCCATTAGGATTG 59.617 47.826 6.09 5.63 40.87 2.67
5036 5544 3.382546 CAGTCTTTGGCCATTAGGATTGG 59.617 47.826 6.09 0.00 36.89 3.16
5037 5545 2.695147 GTCTTTGGCCATTAGGATTGGG 59.305 50.000 6.09 0.00 36.89 4.12
5038 5546 2.314549 TCTTTGGCCATTAGGATTGGGT 59.685 45.455 6.09 0.00 36.89 4.51
5039 5547 2.452600 TTGGCCATTAGGATTGGGTC 57.547 50.000 6.09 0.00 36.89 4.46
5040 5548 1.607225 TGGCCATTAGGATTGGGTCT 58.393 50.000 0.00 0.00 36.89 3.85
5041 5549 1.494721 TGGCCATTAGGATTGGGTCTC 59.505 52.381 0.00 0.00 36.89 3.36
5042 5550 1.202940 GGCCATTAGGATTGGGTCTCC 60.203 57.143 0.00 0.00 36.89 3.71
5043 5551 1.777272 GCCATTAGGATTGGGTCTCCT 59.223 52.381 0.00 0.00 45.22 3.69
5044 5552 2.175715 GCCATTAGGATTGGGTCTCCTT 59.824 50.000 0.00 0.00 40.29 3.36
5045 5553 3.748989 GCCATTAGGATTGGGTCTCCTTC 60.749 52.174 0.00 0.00 40.29 3.46
5046 5554 3.181439 CCATTAGGATTGGGTCTCCTTCC 60.181 52.174 0.00 0.00 40.29 3.46
5047 5555 3.508952 TTAGGATTGGGTCTCCTTCCT 57.491 47.619 0.00 10.64 40.29 3.36
5048 5556 2.367947 AGGATTGGGTCTCCTTCCTT 57.632 50.000 0.00 0.00 40.29 3.36
5049 5557 2.200955 AGGATTGGGTCTCCTTCCTTC 58.799 52.381 0.00 0.00 40.29 3.46
5050 5558 1.213182 GGATTGGGTCTCCTTCCTTCC 59.787 57.143 0.00 0.00 34.93 3.46
5051 5559 2.200955 GATTGGGTCTCCTTCCTTCCT 58.799 52.381 0.00 0.00 0.00 3.36
5052 5560 2.133858 TTGGGTCTCCTTCCTTCCTT 57.866 50.000 0.00 0.00 0.00 3.36
5053 5561 2.133858 TGGGTCTCCTTCCTTCCTTT 57.866 50.000 0.00 0.00 0.00 3.11
5054 5562 1.705186 TGGGTCTCCTTCCTTCCTTTG 59.295 52.381 0.00 0.00 0.00 2.77
5055 5563 1.985895 GGGTCTCCTTCCTTCCTTTGA 59.014 52.381 0.00 0.00 0.00 2.69
5056 5564 2.026729 GGGTCTCCTTCCTTCCTTTGAG 60.027 54.545 0.00 0.00 0.00 3.02
5057 5565 2.026729 GGTCTCCTTCCTTCCTTTGAGG 60.027 54.545 0.00 0.00 36.46 3.86
5058 5566 2.640332 GTCTCCTTCCTTCCTTTGAGGT 59.360 50.000 0.00 0.00 36.53 3.85
5059 5567 3.838903 GTCTCCTTCCTTCCTTTGAGGTA 59.161 47.826 0.00 0.00 36.53 3.08
5060 5568 4.471747 GTCTCCTTCCTTCCTTTGAGGTAT 59.528 45.833 0.00 0.00 36.53 2.73
5061 5569 4.471386 TCTCCTTCCTTCCTTTGAGGTATG 59.529 45.833 0.00 0.00 36.53 2.39
5062 5570 4.435137 TCCTTCCTTCCTTTGAGGTATGA 58.565 43.478 0.00 0.00 36.53 2.15
5063 5571 4.471386 TCCTTCCTTCCTTTGAGGTATGAG 59.529 45.833 0.00 0.00 36.53 2.90
5064 5572 3.914426 TCCTTCCTTTGAGGTATGAGC 57.086 47.619 0.00 0.00 36.53 4.26
5065 5573 3.181329 TCCTTCCTTTGAGGTATGAGCA 58.819 45.455 0.00 0.00 36.53 4.26
5066 5574 3.198635 TCCTTCCTTTGAGGTATGAGCAG 59.801 47.826 0.00 0.00 36.53 4.24
5067 5575 2.698855 TCCTTTGAGGTATGAGCAGC 57.301 50.000 0.00 0.00 36.53 5.25
5068 5576 2.191400 TCCTTTGAGGTATGAGCAGCT 58.809 47.619 0.00 0.00 36.53 4.24
5069 5577 3.374764 TCCTTTGAGGTATGAGCAGCTA 58.625 45.455 0.00 0.00 36.53 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.450479 ACACCTTGTGGGCGTCTAGC 62.450 60.000 0.00 0.00 40.18 3.42
3 4 0.034896 AACACCTTGTGGGCGTCTAG 59.965 55.000 0.00 0.00 37.94 2.43
23 24 0.471591 ACCTCTTGGGCAATTTGGCA 60.472 50.000 22.59 7.91 45.76 4.92
70 73 4.393062 CACTGAGCAAACCAAATCGTAGAT 59.607 41.667 0.00 0.00 45.12 1.98
95 98 0.532196 GAATCCGAACGGGGCCTAAG 60.532 60.000 13.29 0.00 36.01 2.18
96 99 1.523524 GAATCCGAACGGGGCCTAA 59.476 57.895 13.29 0.00 36.01 2.69
97 100 2.437396 GGAATCCGAACGGGGCCTA 61.437 63.158 13.29 0.00 36.01 3.93
98 101 3.793888 GGAATCCGAACGGGGCCT 61.794 66.667 13.29 0.00 36.01 5.19
99 102 4.870012 GGGAATCCGAACGGGGCC 62.870 72.222 13.29 11.31 36.01 5.80
100 103 3.752088 GAGGGAATCCGAACGGGGC 62.752 68.421 13.29 3.36 38.33 5.80
101 104 2.504519 GAGGGAATCCGAACGGGG 59.495 66.667 13.29 0.00 38.33 5.73
102 105 2.504519 GGAGGGAATCCGAACGGG 59.495 66.667 13.29 0.00 38.67 5.28
110 113 0.919289 TTGGGGAGTGGGAGGGAATC 60.919 60.000 0.00 0.00 0.00 2.52
111 114 1.165782 TTGGGGAGTGGGAGGGAAT 59.834 57.895 0.00 0.00 0.00 3.01
112 115 1.850755 GTTGGGGAGTGGGAGGGAA 60.851 63.158 0.00 0.00 0.00 3.97
113 116 2.204090 GTTGGGGAGTGGGAGGGA 60.204 66.667 0.00 0.00 0.00 4.20
114 117 2.204151 AGTTGGGGAGTGGGAGGG 60.204 66.667 0.00 0.00 0.00 4.30
115 118 2.301738 GGAGTTGGGGAGTGGGAGG 61.302 68.421 0.00 0.00 0.00 4.30
116 119 2.660064 CGGAGTTGGGGAGTGGGAG 61.660 68.421 0.00 0.00 0.00 4.30
117 120 2.606519 CGGAGTTGGGGAGTGGGA 60.607 66.667 0.00 0.00 0.00 4.37
118 121 4.410400 GCGGAGTTGGGGAGTGGG 62.410 72.222 0.00 0.00 0.00 4.61
119 122 3.316573 GAGCGGAGTTGGGGAGTGG 62.317 68.421 0.00 0.00 0.00 4.00
120 123 1.903877 ATGAGCGGAGTTGGGGAGTG 61.904 60.000 0.00 0.00 0.00 3.51
121 124 1.613630 ATGAGCGGAGTTGGGGAGT 60.614 57.895 0.00 0.00 0.00 3.85
122 125 1.153289 CATGAGCGGAGTTGGGGAG 60.153 63.158 0.00 0.00 0.00 4.30
123 126 2.989639 CATGAGCGGAGTTGGGGA 59.010 61.111 0.00 0.00 0.00 4.81
124 127 2.825836 GCATGAGCGGAGTTGGGG 60.826 66.667 0.00 0.00 0.00 4.96
125 128 2.046023 TGCATGAGCGGAGTTGGG 60.046 61.111 0.00 0.00 46.23 4.12
135 138 3.075148 CCTCAGATTATGGCTGCATGAG 58.925 50.000 0.50 1.95 33.45 2.90
136 139 2.707257 TCCTCAGATTATGGCTGCATGA 59.293 45.455 0.50 0.00 33.45 3.07
137 140 3.075148 CTCCTCAGATTATGGCTGCATG 58.925 50.000 0.50 0.00 33.45 4.06
138 141 2.709934 ACTCCTCAGATTATGGCTGCAT 59.290 45.455 0.50 0.00 33.45 3.96
139 142 2.121948 ACTCCTCAGATTATGGCTGCA 58.878 47.619 0.50 0.00 33.45 4.41
140 143 2.492012 CACTCCTCAGATTATGGCTGC 58.508 52.381 0.00 0.00 33.45 5.25
141 144 3.123157 CCACTCCTCAGATTATGGCTG 57.877 52.381 0.00 0.00 34.71 4.85
143 146 1.889545 GCCACTCCTCAGATTATGGC 58.110 55.000 0.00 0.00 45.26 4.40
144 147 4.155709 TCTAGCCACTCCTCAGATTATGG 58.844 47.826 0.00 0.00 0.00 2.74
145 148 5.798125 TTCTAGCCACTCCTCAGATTATG 57.202 43.478 0.00 0.00 0.00 1.90
146 149 6.014669 GTCATTCTAGCCACTCCTCAGATTAT 60.015 42.308 0.00 0.00 0.00 1.28
147 150 5.303078 GTCATTCTAGCCACTCCTCAGATTA 59.697 44.000 0.00 0.00 0.00 1.75
148 151 4.100808 GTCATTCTAGCCACTCCTCAGATT 59.899 45.833 0.00 0.00 0.00 2.40
149 152 3.640967 GTCATTCTAGCCACTCCTCAGAT 59.359 47.826 0.00 0.00 0.00 2.90
150 153 3.027412 GTCATTCTAGCCACTCCTCAGA 58.973 50.000 0.00 0.00 0.00 3.27
151 154 2.223688 CGTCATTCTAGCCACTCCTCAG 60.224 54.545 0.00 0.00 0.00 3.35
152 155 1.751351 CGTCATTCTAGCCACTCCTCA 59.249 52.381 0.00 0.00 0.00 3.86
153 156 1.537135 GCGTCATTCTAGCCACTCCTC 60.537 57.143 0.00 0.00 0.00 3.71
154 157 0.461961 GCGTCATTCTAGCCACTCCT 59.538 55.000 0.00 0.00 0.00 3.69
155 158 0.461961 AGCGTCATTCTAGCCACTCC 59.538 55.000 0.00 0.00 0.00 3.85
156 159 1.537135 GGAGCGTCATTCTAGCCACTC 60.537 57.143 0.00 0.00 0.00 3.51
157 160 0.461961 GGAGCGTCATTCTAGCCACT 59.538 55.000 0.00 0.00 0.00 4.00
158 161 0.530870 GGGAGCGTCATTCTAGCCAC 60.531 60.000 0.00 0.00 0.00 5.01
159 162 1.686325 GGGGAGCGTCATTCTAGCCA 61.686 60.000 0.00 0.00 0.00 4.75
160 163 1.069935 GGGGAGCGTCATTCTAGCC 59.930 63.158 0.00 0.00 0.00 3.93
161 164 1.300233 CGGGGAGCGTCATTCTAGC 60.300 63.158 0.00 0.00 0.00 3.42
162 165 1.300233 GCGGGGAGCGTCATTCTAG 60.300 63.158 0.00 0.00 35.41 2.43
163 166 2.812499 GCGGGGAGCGTCATTCTA 59.188 61.111 0.00 0.00 35.41 2.10
190 193 4.087892 CTCCACTCCCCCACTGCG 62.088 72.222 0.00 0.00 0.00 5.18
191 194 3.721706 CCTCCACTCCCCCACTGC 61.722 72.222 0.00 0.00 0.00 4.40
192 195 3.011517 CCCTCCACTCCCCCACTG 61.012 72.222 0.00 0.00 0.00 3.66
193 196 3.128767 AACCCTCCACTCCCCCACT 62.129 63.158 0.00 0.00 0.00 4.00
194 197 2.531942 AACCCTCCACTCCCCCAC 60.532 66.667 0.00 0.00 0.00 4.61
195 198 2.531685 CAACCCTCCACTCCCCCA 60.532 66.667 0.00 0.00 0.00 4.96
196 199 4.048470 GCAACCCTCCACTCCCCC 62.048 72.222 0.00 0.00 0.00 5.40
197 200 4.048470 GGCAACCCTCCACTCCCC 62.048 72.222 0.00 0.00 0.00 4.81
209 212 0.313987 GTAAGGCACTGTTGGGCAAC 59.686 55.000 0.00 0.00 40.86 4.17
210 213 0.184933 AGTAAGGCACTGTTGGGCAA 59.815 50.000 0.00 0.00 40.86 4.52
211 214 1.060729 TAGTAAGGCACTGTTGGGCA 58.939 50.000 0.00 0.00 40.86 5.36
212 215 2.420058 ATAGTAAGGCACTGTTGGGC 57.580 50.000 0.00 0.00 40.86 5.36
213 216 4.196971 GGTAATAGTAAGGCACTGTTGGG 58.803 47.826 0.00 0.00 40.86 4.12
214 217 4.839121 TGGTAATAGTAAGGCACTGTTGG 58.161 43.478 0.00 0.00 40.86 3.77
215 218 5.938125 ACTTGGTAATAGTAAGGCACTGTTG 59.062 40.000 0.00 0.00 40.86 3.33
216 219 6.123045 ACTTGGTAATAGTAAGGCACTGTT 57.877 37.500 0.00 0.00 40.86 3.16
217 220 5.757099 ACTTGGTAATAGTAAGGCACTGT 57.243 39.130 0.00 0.00 40.86 3.55
218 221 7.772332 CTTACTTGGTAATAGTAAGGCACTG 57.228 40.000 12.66 0.00 45.76 3.66
273 276 1.826720 ACATTGTGATCATTGGTGGCC 59.173 47.619 0.00 0.00 31.61 5.36
316 320 7.988028 TGTCACATTATCGTGGTTAATATCCAA 59.012 33.333 0.00 0.00 37.50 3.53
359 363 7.120726 GGTTATTACTACAAGCTGAACATTGGT 59.879 37.037 0.00 0.00 0.00 3.67
361 365 8.039603 TGGTTATTACTACAAGCTGAACATTG 57.960 34.615 0.00 0.00 0.00 2.82
368 372 5.585047 GGTCCTTGGTTATTACTACAAGCTG 59.415 44.000 0.00 0.00 39.09 4.24
369 373 5.487845 AGGTCCTTGGTTATTACTACAAGCT 59.512 40.000 0.00 0.00 39.09 3.74
441 447 6.940298 TGAGGAAAAACTAAGACTGGGTATTG 59.060 38.462 0.00 0.00 0.00 1.90
484 492 9.905713 TGTTACTGGATAATCTAGCTTTTCATT 57.094 29.630 0.00 0.00 0.00 2.57
489 497 9.686683 ACAAATGTTACTGGATAATCTAGCTTT 57.313 29.630 0.00 0.00 0.00 3.51
559 572 5.471556 TTACGGTAAGGTCAATCAGTGAA 57.528 39.130 0.00 0.00 38.23 3.18
583 596 6.989659 TCGGATAAAATACTACAGGTCCATC 58.010 40.000 0.00 0.00 0.00 3.51
662 832 6.286240 TCACGTTCTAGTGGAGTAGTAGTA 57.714 41.667 0.00 0.00 42.10 1.82
663 833 5.157940 TCACGTTCTAGTGGAGTAGTAGT 57.842 43.478 0.00 0.00 42.10 2.73
664 834 6.093771 ACATTCACGTTCTAGTGGAGTAGTAG 59.906 42.308 0.00 0.00 42.10 2.57
767 937 7.062605 ACGAACTAGATGTGGTATTTTTACACG 59.937 37.037 0.00 0.00 37.92 4.49
867 1045 7.158099 ACAGGAATTCTTAACTAACAATGCC 57.842 36.000 5.23 0.00 0.00 4.40
1027 1206 2.045047 TGAACAAGAGGAGGAGGAGGAT 59.955 50.000 0.00 0.00 0.00 3.24
1028 1207 1.433199 TGAACAAGAGGAGGAGGAGGA 59.567 52.381 0.00 0.00 0.00 3.71
1029 1208 1.944177 TGAACAAGAGGAGGAGGAGG 58.056 55.000 0.00 0.00 0.00 4.30
1030 1209 4.285863 AGTATGAACAAGAGGAGGAGGAG 58.714 47.826 0.00 0.00 0.00 3.69
1251 1430 0.191064 AGGTGTCCTTGAGAGGGTGA 59.809 55.000 0.00 0.00 43.72 4.02
1329 1508 2.509336 GATGACCACGCCACCTCG 60.509 66.667 0.00 0.00 0.00 4.63
1392 1571 1.070105 GTGTACGACCAGGTTGCCA 59.930 57.895 6.76 1.17 0.00 4.92
1428 1607 0.172578 CGAACGACTGCCACAGGATA 59.827 55.000 0.00 0.00 35.51 2.59
1503 1682 1.647545 TAAGGTACCACTCGTCGCCG 61.648 60.000 15.94 0.00 0.00 6.46
1548 1727 2.203509 CGGTAGCTCCCCGGAGAT 60.204 66.667 15.14 10.96 44.53 2.75
1708 1887 3.414700 CTTGCTGGCCGTCACGTC 61.415 66.667 0.00 0.00 0.00 4.34
1863 2042 1.153823 GTAGGCATCGCACACGTCT 60.154 57.895 0.00 0.00 41.18 4.18
2040 2219 2.278206 CCATCCGTCGCTGTCTCG 60.278 66.667 0.00 0.00 0.00 4.04
2042 2221 2.172483 AAAGCCATCCGTCGCTGTCT 62.172 55.000 0.00 0.00 34.94 3.41
2094 2273 1.536940 TATCCACCGACACGTTCTGA 58.463 50.000 0.00 0.00 0.00 3.27
2102 2281 2.297315 GAGATGCTCATATCCACCGACA 59.703 50.000 0.00 0.00 0.00 4.35
2112 2291 1.202770 TCCTCCGTCGAGATGCTCATA 60.203 52.381 0.00 0.00 38.52 2.15
2114 2293 1.077716 TCCTCCGTCGAGATGCTCA 60.078 57.895 0.00 0.00 38.52 4.26
2124 2303 0.755698 TATCCCTGCACTCCTCCGTC 60.756 60.000 0.00 0.00 0.00 4.79
2172 2351 3.596088 CGGATCTCAGCGGATGCGTAA 62.596 57.143 8.84 0.00 46.91 3.18
2178 2357 0.958091 CTTCTCGGATCTCAGCGGAT 59.042 55.000 0.00 0.00 0.00 4.18
2181 2360 0.248825 CACCTTCTCGGATCTCAGCG 60.249 60.000 0.00 0.00 36.31 5.18
2184 2363 1.667154 CGCCACCTTCTCGGATCTCA 61.667 60.000 0.00 0.00 36.31 3.27
2229 2414 1.736032 CGAAGATCGACCAAGTCACCC 60.736 57.143 0.00 0.00 43.74 4.61
2236 2421 2.587956 CACGTAACGAAGATCGACCAA 58.412 47.619 6.78 0.00 43.74 3.67
2241 2426 1.542544 GGTCCACGTAACGAAGATCG 58.457 55.000 0.00 0.00 46.93 3.69
2250 2435 2.601067 TGCCCTCGGTCCACGTAA 60.601 61.111 0.00 0.00 44.69 3.18
2256 2441 2.444895 AGATCCTGCCCTCGGTCC 60.445 66.667 0.00 0.00 0.00 4.46
2299 2484 8.730680 GTTGACTGTCATTGTTTTCATACCTAT 58.269 33.333 11.86 0.00 0.00 2.57
2306 2491 4.946772 TGAGGTTGACTGTCATTGTTTTCA 59.053 37.500 11.86 7.41 0.00 2.69
2311 2496 6.096705 TGAAAAATGAGGTTGACTGTCATTGT 59.903 34.615 11.86 0.00 39.47 2.71
2312 2497 6.506147 TGAAAAATGAGGTTGACTGTCATTG 58.494 36.000 11.86 0.00 39.47 2.82
2317 2502 6.119536 TGTACTGAAAAATGAGGTTGACTGT 58.880 36.000 0.00 0.00 0.00 3.55
2329 2527 6.294176 GCCAGTGAACTGATGTACTGAAAAAT 60.294 38.462 12.05 0.00 46.59 1.82
2343 2541 0.798776 CGCCTAAAGCCAGTGAACTG 59.201 55.000 3.35 3.35 43.40 3.16
2347 2545 1.202533 GCTATCGCCTAAAGCCAGTGA 60.203 52.381 0.00 0.00 38.78 3.41
2348 2546 1.202580 AGCTATCGCCTAAAGCCAGTG 60.203 52.381 0.00 0.00 38.78 3.66
2356 2554 4.162698 TCAACCCTTAAAGCTATCGCCTAA 59.837 41.667 0.00 0.00 36.60 2.69
2357 2555 3.707611 TCAACCCTTAAAGCTATCGCCTA 59.292 43.478 0.00 0.00 36.60 3.93
2359 2557 2.612672 GTCAACCCTTAAAGCTATCGCC 59.387 50.000 0.00 0.00 36.60 5.54
2360 2558 3.309954 CAGTCAACCCTTAAAGCTATCGC 59.690 47.826 0.00 0.00 0.00 4.58
2361 2559 3.309954 GCAGTCAACCCTTAAAGCTATCG 59.690 47.826 0.00 0.00 0.00 2.92
2367 2565 4.701651 TGATCATGCAGTCAACCCTTAAAG 59.298 41.667 0.00 0.00 0.00 1.85
2368 2566 4.458989 GTGATCATGCAGTCAACCCTTAAA 59.541 41.667 0.00 0.00 0.00 1.52
2369 2567 4.009675 GTGATCATGCAGTCAACCCTTAA 58.990 43.478 0.00 0.00 0.00 1.85
2370 2568 3.008923 TGTGATCATGCAGTCAACCCTTA 59.991 43.478 0.00 0.00 0.00 2.69
2371 2569 2.224843 TGTGATCATGCAGTCAACCCTT 60.225 45.455 0.00 0.00 0.00 3.95
2372 2570 1.352017 TGTGATCATGCAGTCAACCCT 59.648 47.619 0.00 0.00 0.00 4.34
2373 2571 1.470098 GTGTGATCATGCAGTCAACCC 59.530 52.381 0.00 0.00 0.00 4.11
2375 2573 2.153645 TGGTGTGATCATGCAGTCAAC 58.846 47.619 0.00 0.00 0.00 3.18
2385 2599 7.502226 AGAAGAAAATACTTGTTGGTGTGATCA 59.498 33.333 0.00 0.00 0.00 2.92
2386 2600 7.875971 AGAAGAAAATACTTGTTGGTGTGATC 58.124 34.615 0.00 0.00 0.00 2.92
2391 2605 7.707104 ACAGAAGAAGAAAATACTTGTTGGTG 58.293 34.615 0.00 0.00 34.39 4.17
2397 2611 8.778358 AGCTGTTACAGAAGAAGAAAATACTTG 58.222 33.333 17.40 0.00 32.44 3.16
2399 2613 7.934120 ACAGCTGTTACAGAAGAAGAAAATACT 59.066 33.333 15.25 0.00 32.44 2.12
2400 2614 8.012241 CACAGCTGTTACAGAAGAAGAAAATAC 58.988 37.037 18.94 0.00 32.44 1.89
2401 2615 7.307989 GCACAGCTGTTACAGAAGAAGAAAATA 60.308 37.037 18.94 0.00 32.44 1.40
2402 2616 6.514048 GCACAGCTGTTACAGAAGAAGAAAAT 60.514 38.462 18.94 0.00 32.44 1.82
2403 2617 5.220854 GCACAGCTGTTACAGAAGAAGAAAA 60.221 40.000 18.94 0.00 32.44 2.29
2405 2619 3.809832 GCACAGCTGTTACAGAAGAAGAA 59.190 43.478 18.94 0.00 32.44 2.52
2406 2620 3.393800 GCACAGCTGTTACAGAAGAAGA 58.606 45.455 18.94 0.00 32.44 2.87
2407 2621 2.481952 GGCACAGCTGTTACAGAAGAAG 59.518 50.000 18.94 2.59 32.44 2.85
2413 2665 1.267806 CCTTTGGCACAGCTGTTACAG 59.732 52.381 18.94 8.18 42.39 2.74
2433 2685 1.529826 CGCAATAGCAAACTTCGAGCC 60.530 52.381 0.00 0.00 42.27 4.70
2452 2704 3.777925 CCGGCGCAAGAACAGTCG 61.778 66.667 10.83 0.00 43.02 4.18
2498 2750 6.680810 TCTCCAGCAAATGACAAATAACAAG 58.319 36.000 0.00 0.00 0.00 3.16
2504 2756 4.410099 TCCTTCTCCAGCAAATGACAAAT 58.590 39.130 0.00 0.00 0.00 2.32
2533 2788 5.219914 CCGTTTAGTCGTTTACGTGAGATTC 60.220 44.000 0.00 0.00 40.80 2.52
2534 2789 4.618489 CCGTTTAGTCGTTTACGTGAGATT 59.382 41.667 0.00 0.00 40.80 2.40
2542 2797 4.322009 GCAGAGTACCGTTTAGTCGTTTAC 59.678 45.833 0.00 0.00 0.00 2.01
2567 2822 9.004717 AGGAAAAACAAAGAGATTAGAAGCTAC 57.995 33.333 0.00 0.00 0.00 3.58
2578 2833 8.349983 GCAAGTGTATTAGGAAAAACAAAGAGA 58.650 33.333 0.00 0.00 0.00 3.10
2581 2836 8.816640 ATGCAAGTGTATTAGGAAAAACAAAG 57.183 30.769 0.00 0.00 0.00 2.77
2595 2851 6.202954 GCCGAGTTAGATTTATGCAAGTGTAT 59.797 38.462 0.00 0.00 0.00 2.29
2597 2853 4.332819 GCCGAGTTAGATTTATGCAAGTGT 59.667 41.667 0.00 0.00 0.00 3.55
2603 2859 5.294552 AGTTTGAGCCGAGTTAGATTTATGC 59.705 40.000 0.00 0.00 0.00 3.14
2604 2860 6.709643 CAGTTTGAGCCGAGTTAGATTTATG 58.290 40.000 0.00 0.00 0.00 1.90
2605 2861 5.294552 GCAGTTTGAGCCGAGTTAGATTTAT 59.705 40.000 0.00 0.00 0.00 1.40
2607 2863 3.437049 GCAGTTTGAGCCGAGTTAGATTT 59.563 43.478 0.00 0.00 0.00 2.17
2612 2868 1.343142 TCTGCAGTTTGAGCCGAGTTA 59.657 47.619 14.67 0.00 0.00 2.24
2614 2870 0.322975 ATCTGCAGTTTGAGCCGAGT 59.677 50.000 14.67 0.00 0.00 4.18
2617 2873 0.957395 ACCATCTGCAGTTTGAGCCG 60.957 55.000 14.67 3.24 0.00 5.52
2633 2893 4.098914 AGCTGAACTTTGTGGAATACCA 57.901 40.909 0.00 0.00 44.76 3.25
2634 2894 5.880332 TCATAGCTGAACTTTGTGGAATACC 59.120 40.000 0.00 0.00 0.00 2.73
2636 2896 6.472016 TGTCATAGCTGAACTTTGTGGAATA 58.528 36.000 0.00 0.00 31.85 1.75
2642 2902 4.757149 GGAACTGTCATAGCTGAACTTTGT 59.243 41.667 0.00 0.00 31.85 2.83
2669 2929 3.686726 CCTTTAGAGTGTGCAGATCAACC 59.313 47.826 0.00 0.00 0.00 3.77
2687 2947 5.248380 AGAAATTCAGTGTAGCCTCCTTT 57.752 39.130 0.00 0.00 0.00 3.11
2691 2951 3.119101 TCGGAGAAATTCAGTGTAGCCTC 60.119 47.826 0.00 0.00 0.00 4.70
2700 2960 2.680312 TGGCTCTCGGAGAAATTCAG 57.320 50.000 9.32 0.00 34.09 3.02
2716 2976 1.747355 CTCCTTGACCAATCACATGGC 59.253 52.381 0.00 0.00 44.75 4.40
2738 2998 5.299279 GCACACCTTATACACTATGCCAAAT 59.701 40.000 0.00 0.00 0.00 2.32
2760 3020 1.356270 GATCAAATGGATGCGCGCA 59.644 52.632 38.27 38.27 36.00 6.09
2823 3136 7.764443 GTGAGTGTACCATTATCAAGCTCTTAA 59.236 37.037 0.00 0.00 0.00 1.85
2827 3140 4.811557 GGTGAGTGTACCATTATCAAGCTC 59.188 45.833 0.00 0.00 40.54 4.09
2839 3156 1.774894 TTGGCCCTGGTGAGTGTACC 61.775 60.000 0.00 0.00 41.24 3.34
2845 3162 0.625849 AGGTAATTGGCCCTGGTGAG 59.374 55.000 0.00 0.00 0.00 3.51
2855 3172 2.629051 GTTCTCCCGTCAGGTAATTGG 58.371 52.381 0.00 0.00 36.75 3.16
2882 3199 1.277557 CACTGCCTAAGCCTCTTCACT 59.722 52.381 0.00 0.00 38.69 3.41
2902 3219 0.877743 GCCTTTCCTTGTGAGAGCAC 59.122 55.000 0.00 0.00 45.35 4.40
2912 3229 1.620822 AGTCGCATTTGCCTTTCCTT 58.379 45.000 0.00 0.00 37.91 3.36
2930 3247 1.001406 ACCTCCACTTCTCTTGCGAAG 59.999 52.381 0.00 0.00 44.59 3.79
2934 3251 2.354259 CATCACCTCCACTTCTCTTGC 58.646 52.381 0.00 0.00 0.00 4.01
2964 3281 1.392589 CGAATAAGGTTGCCATGCCT 58.607 50.000 0.00 0.00 36.51 4.75
2987 3304 1.673033 CCTTCGTCACAGTAGGCAAGG 60.673 57.143 0.00 0.00 0.00 3.61
2993 3310 1.199327 TCTTCGCCTTCGTCACAGTAG 59.801 52.381 0.00 0.00 36.96 2.57
2999 3316 0.608308 TCCTCTCTTCGCCTTCGTCA 60.608 55.000 0.00 0.00 36.96 4.35
3023 3340 1.842052 TGGGCATGTAGACGTAGACA 58.158 50.000 4.61 4.61 0.00 3.41
3029 3346 2.002586 CTCTTGTTGGGCATGTAGACG 58.997 52.381 0.00 0.00 0.00 4.18
3083 3400 4.756642 TGATAAGAGGCAAGACAAGTTGTG 59.243 41.667 14.57 0.00 0.00 3.33
3145 3497 2.941720 GGCAAACCAAATGCAAAGACAA 59.058 40.909 0.00 0.00 45.60 3.18
3187 3539 3.040965 CTGGGTTCACCTGCAATGT 57.959 52.632 0.00 0.00 41.11 2.71
3237 3589 3.004629 GCAATGCCGTTGATGATATCCAA 59.995 43.478 0.00 0.00 40.37 3.53
3260 3612 2.032634 CATGTACGCCACGCCTTGT 61.033 57.895 0.00 0.00 0.00 3.16
3314 3666 2.785477 CAGCACGTTTTGAAGCTTCAAG 59.215 45.455 33.76 26.47 46.68 3.02
3371 3723 4.927782 AACAGCTTCGCGGTGCCA 62.928 61.111 17.73 0.00 44.86 4.92
3403 3755 1.781786 GATGGTGAGGCTAGAGTCCA 58.218 55.000 0.00 0.00 0.00 4.02
3482 3834 2.933260 ACCCAACATTTGCAAACGAAAC 59.067 40.909 15.41 0.00 0.00 2.78
3500 3852 2.149973 AAAATCATCTGAGCCCACCC 57.850 50.000 0.00 0.00 0.00 4.61
3501 3853 3.629398 CAGTAAAATCATCTGAGCCCACC 59.371 47.826 0.00 0.00 0.00 4.61
3562 3920 3.512516 GCCCGCAATGACTCTGGC 61.513 66.667 0.00 0.00 0.00 4.85
3640 3998 2.749839 TCGCCATTCCTTTGCCCG 60.750 61.111 0.00 0.00 0.00 6.13
3643 4001 1.425428 CGTCTCGCCATTCCTTTGC 59.575 57.895 0.00 0.00 0.00 3.68
3675 4033 6.093495 GGCAATGCAGTTTCTACTTACATGTA 59.907 38.462 7.79 0.08 31.94 2.29
3697 4055 1.899814 AGACCGTAGACAATTGAGGCA 59.100 47.619 13.59 0.00 0.00 4.75
3699 4057 3.262420 CCAAGACCGTAGACAATTGAGG 58.738 50.000 13.59 9.38 0.00 3.86
3746 4104 3.858503 GCCTGCAAAACACAAGAGAATCC 60.859 47.826 0.00 0.00 33.66 3.01
3756 4114 1.004679 CCCCATGCCTGCAAAACAC 60.005 57.895 0.00 0.00 0.00 3.32
3802 4160 1.519455 CACCGTCGGATCAAGGAGC 60.519 63.158 20.51 0.00 0.00 4.70
3805 4163 1.137086 AGATTCACCGTCGGATCAAGG 59.863 52.381 20.51 0.01 0.00 3.61
3812 4170 1.437986 GAGGGAGATTCACCGTCGG 59.562 63.158 10.48 10.48 33.70 4.79
3854 4212 1.673920 CCTCTCGAGTTCAGAGCCTAC 59.326 57.143 13.13 0.00 36.77 3.18
3889 4247 2.172082 TGATTCCTGGATGCAGAGAAGG 59.828 50.000 16.85 0.00 0.00 3.46
3937 4295 0.179070 TGGTTAGCACTGCGACAACA 60.179 50.000 14.29 2.38 0.00 3.33
3942 4300 1.890489 TCTTAGTGGTTAGCACTGCGA 59.110 47.619 24.92 17.49 34.38 5.10
3946 4304 3.258622 GTGAGGTCTTAGTGGTTAGCACT 59.741 47.826 20.86 20.86 36.74 4.40
3947 4305 3.006537 TGTGAGGTCTTAGTGGTTAGCAC 59.993 47.826 6.42 6.42 0.00 4.40
3958 4316 1.671328 CGAGCGATCTGTGAGGTCTTA 59.329 52.381 0.00 0.00 0.00 2.10
3988 4346 1.600485 CGTTGGTTGTATATTCCGGGC 59.400 52.381 0.00 0.00 0.00 6.13
4000 4358 2.920490 CACAAACCTTGTTCGTTGGTTG 59.080 45.455 0.00 0.00 43.23 3.77
4004 4362 3.425404 CTGTCACAAACCTTGTTCGTTG 58.575 45.455 0.00 0.00 43.23 4.10
4005 4363 2.422127 CCTGTCACAAACCTTGTTCGTT 59.578 45.455 0.00 0.00 43.23 3.85
4006 4364 2.014128 CCTGTCACAAACCTTGTTCGT 58.986 47.619 0.00 0.00 43.23 3.85
4046 4404 1.092348 TCGAGATCGATCGTTGTGGT 58.908 50.000 19.33 0.00 44.22 4.16
4102 4473 2.226962 ATGAGCTCACTTGGGCATTT 57.773 45.000 20.97 0.00 0.00 2.32
4113 4484 8.641499 AACAAAATAAACGAAAAATGAGCTCA 57.359 26.923 20.79 20.79 0.00 4.26
4133 4504 1.227883 TAGCGGCCAACGGAACAAA 60.228 52.632 2.24 0.00 44.51 2.83
4179 4550 6.015350 CAGAGGAAGTTACACTTTCTGGTAGA 60.015 42.308 1.96 0.00 43.86 2.59
4206 4579 7.923414 AGGAACACATCAAGTAAAGGATAAC 57.077 36.000 0.00 0.00 0.00 1.89
4286 4662 4.377897 TGTGAGAAGAGATCGCGAGTATA 58.622 43.478 16.66 0.00 0.00 1.47
4287 4663 3.206964 TGTGAGAAGAGATCGCGAGTAT 58.793 45.455 16.66 1.93 0.00 2.12
4318 4694 0.323629 GTGCCACTAGTAACAGCCCA 59.676 55.000 0.00 0.00 0.00 5.36
4319 4695 0.323629 TGTGCCACTAGTAACAGCCC 59.676 55.000 0.00 0.00 0.00 5.19
4320 4696 2.009774 CATGTGCCACTAGTAACAGCC 58.990 52.381 0.00 0.00 0.00 4.85
4321 4697 1.398390 GCATGTGCCACTAGTAACAGC 59.602 52.381 0.00 3.73 34.31 4.40
4322 4698 1.660607 CGCATGTGCCACTAGTAACAG 59.339 52.381 0.00 0.00 37.91 3.16
4325 4701 1.273886 TCACGCATGTGCCACTAGTAA 59.726 47.619 6.08 0.00 46.01 2.24
4326 4702 0.892063 TCACGCATGTGCCACTAGTA 59.108 50.000 6.08 0.00 46.01 1.82
4328 4704 0.390340 ACTCACGCATGTGCCACTAG 60.390 55.000 6.08 0.00 46.01 2.57
4330 4706 1.962822 CACTCACGCATGTGCCACT 60.963 57.895 6.08 0.00 46.01 4.00
4369 4794 6.309494 TCTGTCATTAGTATCGAAAACCAACG 59.691 38.462 0.00 0.00 0.00 4.10
4483 4933 4.040645 CAGCAGCTGGGTCTAGGA 57.959 61.111 17.12 0.00 0.00 2.94
4554 5010 3.879295 TGCCTTGTTCAGAAAACTCTGAG 59.121 43.478 2.45 2.45 46.04 3.35
4556 5012 3.004106 CCTGCCTTGTTCAGAAAACTCTG 59.996 47.826 0.00 0.00 39.00 3.35
4563 5019 1.768275 TGAGTCCTGCCTTGTTCAGAA 59.232 47.619 0.00 0.00 33.54 3.02
4564 5020 1.423584 TGAGTCCTGCCTTGTTCAGA 58.576 50.000 0.00 0.00 33.54 3.27
4565 5021 2.260844 TTGAGTCCTGCCTTGTTCAG 57.739 50.000 0.00 0.00 0.00 3.02
4566 5022 2.957402 ATTGAGTCCTGCCTTGTTCA 57.043 45.000 0.00 0.00 0.00 3.18
4632 5095 6.043938 ACCCTCTGTTCCTAAATGTAAGACAA 59.956 38.462 0.00 0.00 0.00 3.18
4633 5096 5.546499 ACCCTCTGTTCCTAAATGTAAGACA 59.454 40.000 0.00 0.00 0.00 3.41
4646 5109 3.983044 ACAATCTACACCCTCTGTTCC 57.017 47.619 0.00 0.00 33.91 3.62
4652 5115 7.031226 TGTTACGTATACAATCTACACCCTC 57.969 40.000 3.32 0.00 0.00 4.30
4702 5169 6.197364 TCACACTAAAATTTGAACGGTTGT 57.803 33.333 0.00 0.00 0.00 3.32
4707 5174 7.058354 CGTCTTCATCACACTAAAATTTGAACG 59.942 37.037 0.00 0.00 0.00 3.95
4748 5224 9.931210 GTCAAAAGAAAAACGATCTTCTTCTAA 57.069 29.630 7.82 0.00 40.23 2.10
4760 5236 9.683651 GAATTTTGTTAGGTCAAAAGAAAAACG 57.316 29.630 9.72 0.00 45.92 3.60
4767 5243 7.647715 ACGATGTGAATTTTGTTAGGTCAAAAG 59.352 33.333 9.72 0.00 45.92 2.27
4784 5260 1.069513 AGGTTGAACCGACGATGTGAA 59.930 47.619 8.98 0.00 44.90 3.18
4811 5287 4.500716 GGGGCAGACGAAAGAAAATGAAAA 60.501 41.667 0.00 0.00 0.00 2.29
4812 5288 3.005367 GGGGCAGACGAAAGAAAATGAAA 59.995 43.478 0.00 0.00 0.00 2.69
4813 5289 2.556622 GGGGCAGACGAAAGAAAATGAA 59.443 45.455 0.00 0.00 0.00 2.57
4814 5290 2.159382 GGGGCAGACGAAAGAAAATGA 58.841 47.619 0.00 0.00 0.00 2.57
4815 5291 2.162681 AGGGGCAGACGAAAGAAAATG 58.837 47.619 0.00 0.00 0.00 2.32
4816 5292 2.586648 AGGGGCAGACGAAAGAAAAT 57.413 45.000 0.00 0.00 0.00 1.82
4817 5293 2.227194 GAAGGGGCAGACGAAAGAAAA 58.773 47.619 0.00 0.00 0.00 2.29
4818 5294 1.142060 TGAAGGGGCAGACGAAAGAAA 59.858 47.619 0.00 0.00 0.00 2.52
4819 5295 0.762418 TGAAGGGGCAGACGAAAGAA 59.238 50.000 0.00 0.00 0.00 2.52
4820 5296 0.321671 CTGAAGGGGCAGACGAAAGA 59.678 55.000 0.00 0.00 38.14 2.52
4821 5297 0.321671 TCTGAAGGGGCAGACGAAAG 59.678 55.000 0.00 0.00 39.84 2.62
4822 5298 2.447630 TCTGAAGGGGCAGACGAAA 58.552 52.632 0.00 0.00 39.84 3.46
4823 5299 4.208426 TCTGAAGGGGCAGACGAA 57.792 55.556 0.00 0.00 39.84 3.85
4827 5303 0.178921 AGTGAGTCTGAAGGGGCAGA 60.179 55.000 0.00 0.00 42.31 4.26
4828 5304 0.248843 GAGTGAGTCTGAAGGGGCAG 59.751 60.000 0.00 0.00 37.24 4.85
4844 5320 0.759436 AGGGAAGGTCACGTGTGAGT 60.759 55.000 16.51 0.00 40.75 3.41
4848 5324 1.052124 TGGAAGGGAAGGTCACGTGT 61.052 55.000 16.51 0.00 0.00 4.49
4850 5326 0.108019 GTTGGAAGGGAAGGTCACGT 59.892 55.000 0.00 0.00 0.00 4.49
4853 5329 1.072505 GCGTTGGAAGGGAAGGTCA 59.927 57.895 0.00 0.00 0.00 4.02
4854 5330 2.033194 CGCGTTGGAAGGGAAGGTC 61.033 63.158 0.00 0.00 0.00 3.85
4855 5331 2.032071 CGCGTTGGAAGGGAAGGT 59.968 61.111 0.00 0.00 0.00 3.50
4856 5332 2.033194 GTCGCGTTGGAAGGGAAGG 61.033 63.158 5.77 0.00 32.38 3.46
4857 5333 2.033194 GGTCGCGTTGGAAGGGAAG 61.033 63.158 5.77 0.00 32.38 3.46
4858 5334 2.031465 GGTCGCGTTGGAAGGGAA 59.969 61.111 5.77 0.00 32.38 3.97
4859 5335 1.186917 TAAGGTCGCGTTGGAAGGGA 61.187 55.000 5.77 0.00 0.00 4.20
4860 5336 0.739813 CTAAGGTCGCGTTGGAAGGG 60.740 60.000 5.77 0.00 0.00 3.95
4888 5388 2.202756 GAAGTACTGAGGCGGCGG 60.203 66.667 9.78 0.29 0.00 6.13
4889 5389 2.202756 GGAAGTACTGAGGCGGCG 60.203 66.667 0.51 0.51 0.00 6.46
4890 5390 2.187163 GGGAAGTACTGAGGCGGC 59.813 66.667 0.00 0.00 0.00 6.53
4892 5392 1.139095 GACGGGAAGTACTGAGGCG 59.861 63.158 0.00 0.00 0.00 5.52
4896 5396 0.324091 GGGAGGACGGGAAGTACTGA 60.324 60.000 0.00 0.00 46.08 3.41
4897 5397 1.664321 CGGGAGGACGGGAAGTACTG 61.664 65.000 0.00 0.00 46.08 2.74
4900 5400 2.757099 GCGGGAGGACGGGAAGTA 60.757 66.667 0.00 0.00 0.00 2.24
4970 5478 1.459539 GGATCAGGATGTCCCGGGA 60.460 63.158 22.63 22.63 40.87 5.14
4985 5493 0.461961 GAAGTCCGTAGCTGCAGGAT 59.538 55.000 17.12 0.00 36.34 3.24
4986 5494 1.890894 GAAGTCCGTAGCTGCAGGA 59.109 57.895 17.12 10.36 0.00 3.86
4987 5495 1.517257 CGAAGTCCGTAGCTGCAGG 60.517 63.158 17.12 4.52 0.00 4.85
4988 5496 2.161486 GCGAAGTCCGTAGCTGCAG 61.161 63.158 10.11 10.11 41.15 4.41
4989 5497 2.126071 GCGAAGTCCGTAGCTGCA 60.126 61.111 1.02 0.00 41.15 4.41
4990 5498 2.886124 GGCGAAGTCCGTAGCTGC 60.886 66.667 0.00 0.00 41.15 5.25
4999 5507 2.266055 CTGGGACTGGGCGAAGTC 59.734 66.667 9.76 9.76 44.91 3.01
5000 5508 2.526873 ACTGGGACTGGGCGAAGT 60.527 61.111 0.00 0.00 0.00 3.01
5001 5509 1.831652 AAGACTGGGACTGGGCGAAG 61.832 60.000 0.00 0.00 0.00 3.79
5002 5510 1.415672 AAAGACTGGGACTGGGCGAA 61.416 55.000 0.00 0.00 0.00 4.70
5003 5511 1.841556 AAAGACTGGGACTGGGCGA 60.842 57.895 0.00 0.00 0.00 5.54
5004 5512 1.672356 CAAAGACTGGGACTGGGCG 60.672 63.158 0.00 0.00 0.00 6.13
5005 5513 1.303643 CCAAAGACTGGGACTGGGC 60.304 63.158 0.00 0.00 42.17 5.36
5006 5514 1.303643 GCCAAAGACTGGGACTGGG 60.304 63.158 0.00 0.00 46.54 4.45
5007 5515 1.303643 GGCCAAAGACTGGGACTGG 60.304 63.158 0.00 0.00 46.54 4.00
5008 5516 0.038744 ATGGCCAAAGACTGGGACTG 59.961 55.000 10.96 0.00 46.54 3.51
5009 5517 0.779997 AATGGCCAAAGACTGGGACT 59.220 50.000 10.96 0.00 46.54 3.85
5010 5518 2.369394 CTAATGGCCAAAGACTGGGAC 58.631 52.381 10.96 0.00 46.54 4.46
5011 5519 1.284785 CCTAATGGCCAAAGACTGGGA 59.715 52.381 10.96 0.00 46.54 4.37
5012 5520 1.284785 TCCTAATGGCCAAAGACTGGG 59.715 52.381 10.96 5.71 46.54 4.45
5014 5522 3.382546 CCAATCCTAATGGCCAAAGACTG 59.617 47.826 10.96 4.25 0.00 3.51
5015 5523 3.628257 CCCAATCCTAATGGCCAAAGACT 60.628 47.826 10.96 0.00 36.58 3.24
5016 5524 2.695147 CCCAATCCTAATGGCCAAAGAC 59.305 50.000 10.96 0.00 36.58 3.01
5017 5525 2.314549 ACCCAATCCTAATGGCCAAAGA 59.685 45.455 10.96 4.45 36.58 2.52
5018 5526 2.695147 GACCCAATCCTAATGGCCAAAG 59.305 50.000 10.96 10.85 36.58 2.77
5019 5527 2.314549 AGACCCAATCCTAATGGCCAAA 59.685 45.455 10.96 0.00 36.58 3.28
5020 5528 1.929494 AGACCCAATCCTAATGGCCAA 59.071 47.619 10.96 0.00 36.58 4.52
5021 5529 1.494721 GAGACCCAATCCTAATGGCCA 59.505 52.381 8.56 8.56 36.58 5.36
5022 5530 1.202940 GGAGACCCAATCCTAATGGCC 60.203 57.143 0.00 0.00 36.58 5.36
5023 5531 1.777272 AGGAGACCCAATCCTAATGGC 59.223 52.381 0.00 0.00 45.58 4.40
5024 5532 3.181439 GGAAGGAGACCCAATCCTAATGG 60.181 52.174 0.00 0.00 46.75 3.16
5025 5533 3.718956 AGGAAGGAGACCCAATCCTAATG 59.281 47.826 6.95 0.00 46.75 1.90
5026 5534 4.027782 AGGAAGGAGACCCAATCCTAAT 57.972 45.455 6.95 0.00 46.75 1.73
5027 5535 3.508952 AGGAAGGAGACCCAATCCTAA 57.491 47.619 6.95 0.00 46.75 2.69
5028 5536 3.385115 GAAGGAAGGAGACCCAATCCTA 58.615 50.000 8.59 0.00 46.75 2.94
5030 5538 1.213182 GGAAGGAAGGAGACCCAATCC 59.787 57.143 0.00 0.00 39.61 3.01
5031 5539 2.200955 AGGAAGGAAGGAGACCCAATC 58.799 52.381 0.00 0.00 33.88 2.67
5032 5540 2.367947 AGGAAGGAAGGAGACCCAAT 57.632 50.000 0.00 0.00 33.88 3.16
5033 5541 2.108250 CAAAGGAAGGAAGGAGACCCAA 59.892 50.000 0.00 0.00 33.88 4.12
5034 5542 1.705186 CAAAGGAAGGAAGGAGACCCA 59.295 52.381 0.00 0.00 33.88 4.51
5035 5543 1.985895 TCAAAGGAAGGAAGGAGACCC 59.014 52.381 0.00 0.00 0.00 4.46
5036 5544 2.026729 CCTCAAAGGAAGGAAGGAGACC 60.027 54.545 0.00 0.00 37.67 3.85
5037 5545 2.640332 ACCTCAAAGGAAGGAAGGAGAC 59.360 50.000 0.00 0.00 37.67 3.36
5038 5546 2.991580 ACCTCAAAGGAAGGAAGGAGA 58.008 47.619 0.00 0.00 37.67 3.71
5039 5547 4.471386 TCATACCTCAAAGGAAGGAAGGAG 59.529 45.833 0.00 0.00 37.67 3.69
5040 5548 4.435137 TCATACCTCAAAGGAAGGAAGGA 58.565 43.478 0.00 0.00 37.67 3.36
5041 5549 4.775236 CTCATACCTCAAAGGAAGGAAGG 58.225 47.826 0.00 0.00 37.67 3.46
5042 5550 4.195416 GCTCATACCTCAAAGGAAGGAAG 58.805 47.826 0.00 0.00 37.67 3.46
5043 5551 3.587061 TGCTCATACCTCAAAGGAAGGAA 59.413 43.478 0.00 0.00 37.67 3.36
5044 5552 3.181329 TGCTCATACCTCAAAGGAAGGA 58.819 45.455 0.00 0.00 37.67 3.36
5045 5553 3.539604 CTGCTCATACCTCAAAGGAAGG 58.460 50.000 0.00 0.00 37.67 3.46
5046 5554 2.941720 GCTGCTCATACCTCAAAGGAAG 59.058 50.000 0.00 0.00 37.67 3.46
5047 5555 2.573462 AGCTGCTCATACCTCAAAGGAA 59.427 45.455 0.00 0.00 37.67 3.36
5048 5556 2.191400 AGCTGCTCATACCTCAAAGGA 58.809 47.619 0.00 0.00 37.67 3.36
5049 5557 2.706339 AGCTGCTCATACCTCAAAGG 57.294 50.000 0.00 0.00 42.49 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.