Multiple sequence alignment - TraesCS2A01G485100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G485100 chr2A 100.000 4646 0 0 567 5212 720063138 720058493 0.000000e+00 8580
1 TraesCS2A01G485100 chr2A 83.501 1594 228 20 2550 4132 720315557 720313988 0.000000e+00 1454
2 TraesCS2A01G485100 chr2A 80.143 1259 218 20 1031 2275 720521407 720520167 0.000000e+00 911
3 TraesCS2A01G485100 chr2A 100.000 143 0 0 1 143 720063704 720063562 1.110000e-66 265
4 TraesCS2A01G485100 chr2A 82.530 166 25 3 2304 2467 720315828 720315665 5.440000e-30 143
5 TraesCS2A01G485100 chr2B 91.233 3981 297 31 812 4756 707417691 707413727 0.000000e+00 5371
6 TraesCS2A01G485100 chr2B 86.225 3717 397 63 750 4391 707673895 707670219 0.000000e+00 3921
7 TraesCS2A01G485100 chr2B 84.232 1687 243 21 2539 4211 707691697 707690020 0.000000e+00 1620
8 TraesCS2A01G485100 chr2B 83.964 1690 246 23 2539 4211 707632009 707630328 0.000000e+00 1596
9 TraesCS2A01G485100 chr2B 84.524 1344 179 20 2980 4306 707462958 707461627 0.000000e+00 1303
10 TraesCS2A01G485100 chr2B 80.028 1417 236 29 1031 2421 707633532 707632137 0.000000e+00 1005
11 TraesCS2A01G485100 chr2B 79.301 1459 249 33 1031 2467 707465054 707463627 0.000000e+00 972
12 TraesCS2A01G485100 chr2B 79.170 1421 243 33 1031 2421 707693222 707691825 0.000000e+00 935
13 TraesCS2A01G485100 chr2D 90.238 3780 299 32 567 4331 586151080 586154804 0.000000e+00 4872
14 TraesCS2A01G485100 chr2D 88.538 2975 271 36 750 3675 585896619 585893666 0.000000e+00 3541
15 TraesCS2A01G485100 chr2D 84.342 1686 241 21 2541 4211 585915213 585916890 0.000000e+00 1629
16 TraesCS2A01G485100 chr2D 88.009 1276 96 25 3660 4923 585893650 585892420 0.000000e+00 1456
17 TraesCS2A01G485100 chr2D 83.570 1199 170 17 3026 4211 619331290 619332474 0.000000e+00 1098
18 TraesCS2A01G485100 chr2D 80.299 1269 220 19 1031 2288 585913706 585914955 0.000000e+00 931
19 TraesCS2A01G485100 chr2D 78.254 630 116 11 1794 2407 619328183 619328807 8.190000e-103 385
20 TraesCS2A01G485100 chr2D 75.839 745 133 34 2240 2948 610891558 610892291 8.360000e-88 335
21 TraesCS2A01G485100 chr2D 86.709 158 13 4 4347 4497 586154925 586155081 8.980000e-38 169
22 TraesCS2A01G485100 chr7D 76.423 1370 271 39 2782 4116 585558325 585559677 0.000000e+00 693
23 TraesCS2A01G485100 chr7A 82.955 176 20 3 5046 5212 124054329 124054155 3.250000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G485100 chr2A 720058493 720063704 5211 True 4422.5 8580 100.0000 1 5212 2 chr2A.!!$R2 5211
1 TraesCS2A01G485100 chr2A 720520167 720521407 1240 True 911.0 911 80.1430 1031 2275 1 chr2A.!!$R1 1244
2 TraesCS2A01G485100 chr2A 720313988 720315828 1840 True 798.5 1454 83.0155 2304 4132 2 chr2A.!!$R3 1828
3 TraesCS2A01G485100 chr2B 707413727 707417691 3964 True 5371.0 5371 91.2330 812 4756 1 chr2B.!!$R1 3944
4 TraesCS2A01G485100 chr2B 707670219 707673895 3676 True 3921.0 3921 86.2250 750 4391 1 chr2B.!!$R2 3641
5 TraesCS2A01G485100 chr2B 707630328 707633532 3204 True 1300.5 1596 81.9960 1031 4211 2 chr2B.!!$R4 3180
6 TraesCS2A01G485100 chr2B 707690020 707693222 3202 True 1277.5 1620 81.7010 1031 4211 2 chr2B.!!$R5 3180
7 TraesCS2A01G485100 chr2B 707461627 707465054 3427 True 1137.5 1303 81.9125 1031 4306 2 chr2B.!!$R3 3275
8 TraesCS2A01G485100 chr2D 586151080 586155081 4001 False 2520.5 4872 88.4735 567 4497 2 chr2D.!!$F3 3930
9 TraesCS2A01G485100 chr2D 585892420 585896619 4199 True 2498.5 3541 88.2735 750 4923 2 chr2D.!!$R1 4173
10 TraesCS2A01G485100 chr2D 585913706 585916890 3184 False 1280.0 1629 82.3205 1031 4211 2 chr2D.!!$F2 3180
11 TraesCS2A01G485100 chr2D 619328183 619332474 4291 False 741.5 1098 80.9120 1794 4211 2 chr2D.!!$F4 2417
12 TraesCS2A01G485100 chr2D 610891558 610892291 733 False 335.0 335 75.8390 2240 2948 1 chr2D.!!$F1 708
13 TraesCS2A01G485100 chr7D 585558325 585559677 1352 False 693.0 693 76.4230 2782 4116 1 chr7D.!!$F1 1334

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
808 814 0.109272 GTCGCACTCACCGATCTGAA 60.109 55.000 0.00 0.00 37.04 3.02 F
914 949 0.530650 AGCTATGCGATGGTTGTCCG 60.531 55.000 0.00 0.00 36.30 4.79 F
1377 1445 0.532573 TCTCGAGCATGGGAGTTGTC 59.467 55.000 7.81 0.00 0.00 3.18 F
1675 1743 1.343142 CAGTAGGTGGCGGCATATACA 59.657 52.381 26.97 8.04 0.00 2.29 F
1871 1961 1.593750 GCAGCTGCGACCTCTATGG 60.594 63.158 25.23 0.00 42.93 2.74 F
2763 2993 2.290641 GCAAGCAAACGAAAGAAGAGGA 59.709 45.455 0.00 0.00 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1871 1961 0.174162 GCTGAATGGGCCACATGAAC 59.826 55.000 9.28 0.0 40.44 3.18 R
2077 2173 0.436150 CACTCAGTCGTGCATTCGTG 59.564 55.000 0.00 0.0 0.00 4.35 R
2224 2320 1.157870 CGAAGGTGCAGGTTGTCGTT 61.158 55.000 0.00 0.0 0.00 3.85 R
3412 5582 1.439543 AAAGAAGACCTCTGGCCACT 58.560 50.000 0.00 0.0 33.37 4.00 R
3684 5896 2.076863 GGTGACATGTAACCACTGCTC 58.923 52.381 25.49 0.0 34.05 4.26 R
4720 7103 2.445145 TGACCCAGAATGTTCCAAGGAA 59.555 45.455 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 7.454260 TGGCACAACATACAACATGTATAAA 57.546 32.000 0.00 0.00 37.05 1.40
43 44 7.534282 TGGCACAACATACAACATGTATAAAG 58.466 34.615 0.00 0.00 37.05 1.85
44 45 7.391833 TGGCACAACATACAACATGTATAAAGA 59.608 33.333 0.00 0.00 37.05 2.52
45 46 8.240682 GGCACAACATACAACATGTATAAAGAA 58.759 33.333 0.00 0.00 41.28 2.52
46 47 9.619316 GCACAACATACAACATGTATAAAGAAA 57.381 29.630 0.00 0.00 41.28 2.52
51 52 8.966868 ACATACAACATGTATAAAGAAAAGGGG 58.033 33.333 0.00 0.00 41.28 4.79
52 53 9.184523 CATACAACATGTATAAAGAAAAGGGGA 57.815 33.333 0.00 0.00 41.28 4.81
53 54 9.762381 ATACAACATGTATAAAGAAAAGGGGAA 57.238 29.630 0.00 0.00 41.41 3.97
54 55 8.485578 ACAACATGTATAAAGAAAAGGGGAAA 57.514 30.769 0.00 0.00 0.00 3.13
55 56 8.929487 ACAACATGTATAAAGAAAAGGGGAAAA 58.071 29.630 0.00 0.00 0.00 2.29
56 57 9.942850 CAACATGTATAAAGAAAAGGGGAAAAT 57.057 29.630 0.00 0.00 0.00 1.82
131 132 9.470399 AAAATCCATTTAGTAAACCCGATAACT 57.530 29.630 0.00 0.00 0.00 2.24
132 133 8.446599 AATCCATTTAGTAAACCCGATAACTG 57.553 34.615 0.00 0.00 0.00 3.16
133 134 7.185318 TCCATTTAGTAAACCCGATAACTGA 57.815 36.000 0.00 0.00 0.00 3.41
134 135 7.622713 TCCATTTAGTAAACCCGATAACTGAA 58.377 34.615 0.00 0.00 0.00 3.02
135 136 7.767198 TCCATTTAGTAAACCCGATAACTGAAG 59.233 37.037 0.00 0.00 0.00 3.02
136 137 7.551617 CCATTTAGTAAACCCGATAACTGAAGT 59.448 37.037 0.00 0.00 0.00 3.01
137 138 7.894376 TTTAGTAAACCCGATAACTGAAGTG 57.106 36.000 0.00 0.00 0.00 3.16
138 139 4.251268 AGTAAACCCGATAACTGAAGTGC 58.749 43.478 0.00 0.00 0.00 4.40
139 140 2.851263 AACCCGATAACTGAAGTGCA 57.149 45.000 0.00 0.00 0.00 4.57
140 141 2.094762 ACCCGATAACTGAAGTGCAC 57.905 50.000 9.40 9.40 0.00 4.57
141 142 1.346395 ACCCGATAACTGAAGTGCACA 59.654 47.619 21.04 0.00 0.00 4.57
142 143 2.027192 ACCCGATAACTGAAGTGCACAT 60.027 45.455 21.04 7.05 0.00 3.21
720 721 3.688673 CAGGAGATCTTTTCTGCCACTTC 59.311 47.826 0.00 0.00 43.47 3.01
806 812 0.179127 ATGTCGCACTCACCGATCTG 60.179 55.000 0.00 0.00 37.04 2.90
807 813 1.241315 TGTCGCACTCACCGATCTGA 61.241 55.000 0.00 0.00 37.04 3.27
808 814 0.109272 GTCGCACTCACCGATCTGAA 60.109 55.000 0.00 0.00 37.04 3.02
809 815 0.601057 TCGCACTCACCGATCTGAAA 59.399 50.000 0.00 0.00 0.00 2.69
810 816 1.204704 TCGCACTCACCGATCTGAAAT 59.795 47.619 0.00 0.00 0.00 2.17
914 949 0.530650 AGCTATGCGATGGTTGTCCG 60.531 55.000 0.00 0.00 36.30 4.79
917 952 2.609491 GCTATGCGATGGTTGTCCGATA 60.609 50.000 0.00 0.00 36.30 2.92
937 979 8.531982 TCCGATATCTATTTTACCTTCCATCTG 58.468 37.037 0.34 0.00 0.00 2.90
938 980 8.531982 CCGATATCTATTTTACCTTCCATCTGA 58.468 37.037 0.34 0.00 0.00 3.27
939 981 9.929180 CGATATCTATTTTACCTTCCATCTGAA 57.071 33.333 0.34 0.00 0.00 3.02
966 1008 1.419374 CGAACTGGTCTGAAGAACCG 58.581 55.000 0.00 0.00 0.00 4.44
981 1029 1.211212 GAACCGCATACCCCCTAAGTT 59.789 52.381 0.00 0.00 0.00 2.66
986 1048 3.493873 CCGCATACCCCCTAAGTTAGTTC 60.494 52.174 9.05 0.00 0.00 3.01
987 1049 3.493873 CGCATACCCCCTAAGTTAGTTCC 60.494 52.174 9.05 0.00 0.00 3.62
988 1050 3.715315 GCATACCCCCTAAGTTAGTTCCT 59.285 47.826 9.05 0.00 0.00 3.36
989 1051 4.444449 GCATACCCCCTAAGTTAGTTCCTG 60.444 50.000 9.05 0.91 0.00 3.86
990 1052 2.558974 ACCCCCTAAGTTAGTTCCTGG 58.441 52.381 9.05 2.64 0.00 4.45
991 1053 1.844497 CCCCCTAAGTTAGTTCCTGGG 59.156 57.143 12.13 12.13 0.00 4.45
1138 1203 2.293318 ACGCTCATCTCCAAGGGCA 61.293 57.895 0.00 0.00 0.00 5.36
1284 1349 1.745141 GCCACTTCATCTCCGATGCTT 60.745 52.381 0.00 0.00 0.00 3.91
1338 1403 2.610859 TCCCAAGGTGGCTCTCCC 60.611 66.667 0.00 0.00 35.79 4.30
1352 1417 2.528127 TCCCTGGGCGGTGAAGAA 60.528 61.111 8.22 0.00 0.00 2.52
1360 1425 1.523758 GGCGGTGAAGAACAACATCT 58.476 50.000 0.00 0.00 35.67 2.90
1376 1444 1.134580 CATCTCGAGCATGGGAGTTGT 60.135 52.381 7.81 0.00 0.00 3.32
1377 1445 0.532573 TCTCGAGCATGGGAGTTGTC 59.467 55.000 7.81 0.00 0.00 3.18
1653 1721 3.373439 GCCTCAATATTCTCGATGATGCC 59.627 47.826 1.62 0.00 30.33 4.40
1675 1743 1.343142 CAGTAGGTGGCGGCATATACA 59.657 52.381 26.97 8.04 0.00 2.29
1871 1961 1.593750 GCAGCTGCGACCTCTATGG 60.594 63.158 25.23 0.00 42.93 2.74
1968 2059 3.250744 CGCTGGTCTTAACATTTCGAGA 58.749 45.455 0.00 0.00 0.00 4.04
1987 2078 4.438148 GAGAGGATGTAGAAGAACCAAGC 58.562 47.826 0.00 0.00 0.00 4.01
2077 2173 3.817647 ACATGTCCTCAACAGAAGCTTTC 59.182 43.478 0.00 0.00 42.37 2.62
2175 2271 2.426023 GCCGACCAGTCAAGGTGT 59.574 61.111 0.00 0.00 43.38 4.16
2224 2320 6.016527 CGACACAGGGAAGTATAGCAACTATA 60.017 42.308 0.00 0.00 0.00 1.31
2236 2332 3.000727 AGCAACTATAACGACAACCTGC 58.999 45.455 0.00 0.00 0.00 4.85
2307 2432 8.364142 ACTTCTATTATCTTGGCACTAGCTTAG 58.636 37.037 0.00 0.00 41.70 2.18
2389 2520 3.308866 CAGTATAGCAGTAACCGCCAAAC 59.691 47.826 0.00 0.00 0.00 2.93
2499 2714 4.056050 ACACAGTTATTCAGTTCACGGAC 58.944 43.478 0.00 0.00 0.00 4.79
2544 2763 2.741612 TGCTTGAAAAAGGTGATTGCG 58.258 42.857 0.00 0.00 0.00 4.85
2661 2885 6.476378 CCTCCTTGTCGGGATATTCAAATAT 58.524 40.000 0.00 0.00 34.56 1.28
2715 2941 4.320608 AAACGGCACTTCATTTTGTGAT 57.679 36.364 0.00 0.00 36.54 3.06
2721 2947 5.863397 CGGCACTTCATTTTGTGATTGTTAT 59.137 36.000 0.00 0.00 36.54 1.89
2761 2991 3.615849 AGCAAGCAAACGAAAGAAGAG 57.384 42.857 0.00 0.00 0.00 2.85
2763 2993 2.290641 GCAAGCAAACGAAAGAAGAGGA 59.709 45.455 0.00 0.00 0.00 3.71
2765 2995 4.557496 GCAAGCAAACGAAAGAAGAGGAAT 60.557 41.667 0.00 0.00 0.00 3.01
2769 2999 6.173339 AGCAAACGAAAGAAGAGGAATATCA 58.827 36.000 0.00 0.00 0.00 2.15
2800 3030 6.296145 GGATCAATGCTAGGATACCTTAGCTT 60.296 42.308 0.00 0.00 34.09 3.74
2801 3031 6.102897 TCAATGCTAGGATACCTTAGCTTC 57.897 41.667 0.00 0.00 34.09 3.86
2826 3056 7.630242 TCTAATGAAATTGGAGGTGAACATC 57.370 36.000 0.00 0.00 39.00 3.06
2835 3065 3.138283 TGGAGGTGAACATCTGGACTTTT 59.862 43.478 0.00 0.00 0.00 2.27
2943 3306 7.909518 AGTTTACAAGGTAACAAAGGGTTTTT 58.090 30.769 0.00 0.00 40.96 1.94
3412 5582 6.827586 ACACGCTTCCAAATAATTAAAGGA 57.172 33.333 0.00 0.00 0.00 3.36
3418 5588 6.538945 TTCCAAATAATTAAAGGAGTGGCC 57.461 37.500 0.00 0.00 0.00 5.36
4096 6318 6.491403 ACTTTTATGCTGGAGAATGAAAGTGT 59.509 34.615 14.00 0.00 43.85 3.55
4133 6357 3.409201 GCAGCCAGCATATCTTGGA 57.591 52.632 6.26 0.00 44.79 3.53
4569 6936 7.849804 TGGTACTTTTATCTCTTCTGCATTC 57.150 36.000 0.00 0.00 0.00 2.67
4570 6937 7.394016 TGGTACTTTTATCTCTTCTGCATTCA 58.606 34.615 0.00 0.00 0.00 2.57
4571 6938 7.882791 TGGTACTTTTATCTCTTCTGCATTCAA 59.117 33.333 0.00 0.00 0.00 2.69
4572 6939 8.178313 GGTACTTTTATCTCTTCTGCATTCAAC 58.822 37.037 0.00 0.00 0.00 3.18
4573 6940 7.992754 ACTTTTATCTCTTCTGCATTCAACT 57.007 32.000 0.00 0.00 0.00 3.16
4574 6941 8.038492 ACTTTTATCTCTTCTGCATTCAACTC 57.962 34.615 0.00 0.00 0.00 3.01
4575 6942 7.663081 ACTTTTATCTCTTCTGCATTCAACTCA 59.337 33.333 0.00 0.00 0.00 3.41
4576 6943 8.571461 TTTTATCTCTTCTGCATTCAACTCAT 57.429 30.769 0.00 0.00 0.00 2.90
4577 6944 7.549615 TTATCTCTTCTGCATTCAACTCATG 57.450 36.000 0.00 0.00 0.00 3.07
4578 6945 5.156608 TCTCTTCTGCATTCAACTCATGA 57.843 39.130 0.00 0.00 35.85 3.07
4705 7088 6.567959 TGTTTGCGGCATATTCAATTATTCA 58.432 32.000 2.28 0.00 0.00 2.57
4775 7158 3.810310 ATTCTTGAAGGCTCTCGTAGG 57.190 47.619 0.00 0.00 0.00 3.18
4784 7167 0.103937 GCTCTCGTAGGCTTGCAGAT 59.896 55.000 0.00 0.00 0.00 2.90
4787 7170 1.824852 TCTCGTAGGCTTGCAGATTGA 59.175 47.619 0.00 0.00 0.00 2.57
4799 7182 1.078848 AGATTGAGTCAGCACCGGC 60.079 57.895 0.00 0.00 41.61 6.13
4807 7190 1.675310 TCAGCACCGGCAGAAATGG 60.675 57.895 0.00 0.00 44.61 3.16
4833 7216 5.044558 GGAGGTCTATCATCTGTTTTCGTC 58.955 45.833 0.00 0.00 0.00 4.20
4846 7229 7.694388 TCTGTTTTCGTCGATTATTATCTGG 57.306 36.000 0.00 0.00 0.00 3.86
4856 7239 6.305877 GTCGATTATTATCTGGCAGACTAACG 59.694 42.308 21.37 19.43 0.00 3.18
4877 7260 2.857748 GCGAGTTCAAAGTGTTTTTGGG 59.142 45.455 0.00 0.00 0.00 4.12
4895 7278 2.032634 GCGACGGCCAAGAATGACA 61.033 57.895 2.24 0.00 0.00 3.58
4912 7295 1.187567 ACATGCACAAAGGGAAGCCC 61.188 55.000 0.00 0.00 45.90 5.19
4927 7310 1.682257 GCCCATGCTCCTCCTATCC 59.318 63.158 0.00 0.00 33.53 2.59
4928 7311 1.978473 CCCATGCTCCTCCTATCCG 59.022 63.158 0.00 0.00 0.00 4.18
4929 7312 1.548357 CCCATGCTCCTCCTATCCGG 61.548 65.000 0.00 0.00 0.00 5.14
4930 7313 1.294780 CATGCTCCTCCTATCCGGC 59.705 63.158 0.00 0.00 0.00 6.13
4931 7314 1.915769 ATGCTCCTCCTATCCGGCC 60.916 63.158 0.00 0.00 0.00 6.13
4932 7315 3.315140 GCTCCTCCTATCCGGCCC 61.315 72.222 0.00 0.00 0.00 5.80
4933 7316 2.604991 CTCCTCCTATCCGGCCCC 60.605 72.222 0.00 0.00 0.00 5.80
4934 7317 4.615795 TCCTCCTATCCGGCCCCG 62.616 72.222 0.00 0.00 39.44 5.73
4964 7347 3.117589 CCGTAGTTCCGGTGTCTTG 57.882 57.895 0.00 0.00 43.07 3.02
4965 7348 0.599558 CCGTAGTTCCGGTGTCTTGA 59.400 55.000 0.00 0.00 43.07 3.02
4966 7349 1.000060 CCGTAGTTCCGGTGTCTTGAA 60.000 52.381 0.00 0.00 43.07 2.69
4967 7350 2.325761 CGTAGTTCCGGTGTCTTGAAG 58.674 52.381 0.00 0.00 0.00 3.02
4968 7351 2.067013 GTAGTTCCGGTGTCTTGAAGC 58.933 52.381 0.00 0.00 0.00 3.86
4969 7352 0.600255 AGTTCCGGTGTCTTGAAGCG 60.600 55.000 0.00 0.00 38.23 4.68
4972 7355 3.423154 CGGTGTCTTGAAGCGGCC 61.423 66.667 0.00 0.00 35.01 6.13
4973 7356 3.423154 GGTGTCTTGAAGCGGCCG 61.423 66.667 24.05 24.05 0.00 6.13
4974 7357 3.423154 GTGTCTTGAAGCGGCCGG 61.423 66.667 29.38 9.14 0.00 6.13
4988 7371 3.834799 CCGGCTACCCAGACCGTC 61.835 72.222 0.00 0.00 45.49 4.79
4989 7372 3.066190 CGGCTACCCAGACCGTCA 61.066 66.667 0.40 0.00 42.01 4.35
4990 7373 2.423898 CGGCTACCCAGACCGTCAT 61.424 63.158 0.40 0.00 42.01 3.06
4991 7374 1.144057 GGCTACCCAGACCGTCATG 59.856 63.158 0.40 0.00 0.00 3.07
4992 7375 1.521681 GCTACCCAGACCGTCATGC 60.522 63.158 0.40 0.00 0.00 4.06
4993 7376 1.226974 CTACCCAGACCGTCATGCG 60.227 63.158 0.40 3.02 40.95 4.73
4994 7377 1.663379 CTACCCAGACCGTCATGCGA 61.663 60.000 10.48 0.00 44.77 5.10
4995 7378 1.940883 TACCCAGACCGTCATGCGAC 61.941 60.000 10.48 5.29 44.77 5.19
4996 7379 2.573869 CCAGACCGTCATGCGACT 59.426 61.111 10.48 7.08 44.77 4.18
4997 7380 1.517257 CCAGACCGTCATGCGACTC 60.517 63.158 10.48 5.48 44.77 3.36
4998 7381 1.869574 CAGACCGTCATGCGACTCG 60.870 63.158 10.48 0.00 44.77 4.18
4999 7382 2.038837 AGACCGTCATGCGACTCGA 61.039 57.895 1.63 0.00 44.77 4.04
5000 7383 1.868251 GACCGTCATGCGACTCGAC 60.868 63.158 1.63 0.00 44.77 4.20
5001 7384 2.178273 CCGTCATGCGACTCGACA 59.822 61.111 1.63 0.24 44.77 4.35
5002 7385 1.443702 CCGTCATGCGACTCGACAA 60.444 57.895 1.63 0.00 44.77 3.18
5003 7386 1.406219 CCGTCATGCGACTCGACAAG 61.406 60.000 1.63 0.00 44.77 3.16
5004 7387 1.704582 GTCATGCGACTCGACAAGC 59.295 57.895 1.63 0.00 39.22 4.01
5005 7388 1.446099 TCATGCGACTCGACAAGCC 60.446 57.895 1.63 0.00 0.00 4.35
5006 7389 2.507102 ATGCGACTCGACAAGCCG 60.507 61.111 1.63 0.00 0.00 5.52
5007 7390 3.282745 ATGCGACTCGACAAGCCGT 62.283 57.895 1.63 0.00 0.00 5.68
5008 7391 3.470567 GCGACTCGACAAGCCGTG 61.471 66.667 1.63 0.00 0.00 4.94
5009 7392 2.254350 CGACTCGACAAGCCGTGA 59.746 61.111 0.00 0.00 0.00 4.35
5010 7393 1.797933 CGACTCGACAAGCCGTGAG 60.798 63.158 0.00 0.00 34.65 3.51
5011 7394 1.579932 GACTCGACAAGCCGTGAGA 59.420 57.895 9.02 1.36 32.81 3.27
5012 7395 0.455295 GACTCGACAAGCCGTGAGAG 60.455 60.000 11.00 11.00 39.61 3.20
5013 7396 0.889638 ACTCGACAAGCCGTGAGAGA 60.890 55.000 16.09 3.51 38.23 3.10
5014 7397 0.455295 CTCGACAAGCCGTGAGAGAC 60.455 60.000 8.47 0.00 37.57 3.36
5024 7407 1.607713 CGTGAGAGACGTGACATCAC 58.392 55.000 0.00 1.70 43.50 3.06
5025 7408 1.197949 CGTGAGAGACGTGACATCACT 59.802 52.381 10.18 0.00 44.34 3.41
5026 7409 2.415512 CGTGAGAGACGTGACATCACTA 59.584 50.000 10.18 0.00 44.34 2.74
5027 7410 3.725305 CGTGAGAGACGTGACATCACTAC 60.725 52.174 10.18 4.29 44.34 2.73
5028 7411 2.747989 TGAGAGACGTGACATCACTACC 59.252 50.000 10.18 0.00 44.34 3.18
5029 7412 2.747989 GAGAGACGTGACATCACTACCA 59.252 50.000 10.18 0.00 44.34 3.25
5030 7413 3.154710 AGAGACGTGACATCACTACCAA 58.845 45.455 10.18 0.00 44.34 3.67
5031 7414 3.764434 AGAGACGTGACATCACTACCAAT 59.236 43.478 10.18 0.00 44.34 3.16
5032 7415 4.106197 GAGACGTGACATCACTACCAATC 58.894 47.826 10.18 0.00 44.34 2.67
5033 7416 3.764434 AGACGTGACATCACTACCAATCT 59.236 43.478 10.18 1.56 44.34 2.40
5034 7417 4.106197 GACGTGACATCACTACCAATCTC 58.894 47.826 10.18 0.00 44.34 2.75
5035 7418 3.764434 ACGTGACATCACTACCAATCTCT 59.236 43.478 10.18 0.00 44.34 3.10
5036 7419 4.220821 ACGTGACATCACTACCAATCTCTT 59.779 41.667 10.18 0.00 44.34 2.85
5037 7420 5.417894 ACGTGACATCACTACCAATCTCTTA 59.582 40.000 10.18 0.00 44.34 2.10
5038 7421 5.974158 CGTGACATCACTACCAATCTCTTAG 59.026 44.000 10.18 0.00 44.34 2.18
5039 7422 6.183360 CGTGACATCACTACCAATCTCTTAGA 60.183 42.308 10.18 0.00 44.34 2.10
5040 7423 7.199766 GTGACATCACTACCAATCTCTTAGAG 58.800 42.308 2.23 2.23 43.25 2.43
5041 7424 7.067615 GTGACATCACTACCAATCTCTTAGAGA 59.932 40.741 14.78 14.78 41.97 3.10
5042 7425 7.067615 TGACATCACTACCAATCTCTTAGAGAC 59.932 40.741 14.73 0.00 41.76 3.36
5043 7426 6.322712 ACATCACTACCAATCTCTTAGAGACC 59.677 42.308 14.73 0.00 41.76 3.85
5044 7427 6.080969 TCACTACCAATCTCTTAGAGACCT 57.919 41.667 14.73 1.92 41.76 3.85
5045 7428 6.494952 TCACTACCAATCTCTTAGAGACCTT 58.505 40.000 14.73 3.13 41.76 3.50
5046 7429 6.378564 TCACTACCAATCTCTTAGAGACCTTG 59.621 42.308 14.73 14.95 41.76 3.61
5047 7430 5.659079 ACTACCAATCTCTTAGAGACCTTGG 59.341 44.000 29.03 29.03 46.22 3.61
5048 7431 3.777522 ACCAATCTCTTAGAGACCTTGGG 59.222 47.826 31.57 20.14 45.62 4.12
5049 7432 3.135530 CCAATCTCTTAGAGACCTTGGGG 59.864 52.174 25.71 13.92 41.46 4.96
5050 7433 1.867363 TCTCTTAGAGACCTTGGGGC 58.133 55.000 8.00 0.00 33.35 5.80
5051 7434 1.362932 TCTCTTAGAGACCTTGGGGCT 59.637 52.381 8.00 0.00 33.35 5.19
5052 7435 1.484240 CTCTTAGAGACCTTGGGGCTG 59.516 57.143 2.53 0.00 35.63 4.85
5053 7436 1.203313 TCTTAGAGACCTTGGGGCTGT 60.203 52.381 0.00 0.00 35.63 4.40
5054 7437 1.630878 CTTAGAGACCTTGGGGCTGTT 59.369 52.381 0.00 0.00 35.63 3.16
5055 7438 1.742308 TAGAGACCTTGGGGCTGTTT 58.258 50.000 0.00 0.00 35.63 2.83
5056 7439 0.111253 AGAGACCTTGGGGCTGTTTG 59.889 55.000 0.00 0.00 35.63 2.93
5057 7440 0.895559 GAGACCTTGGGGCTGTTTGG 60.896 60.000 0.00 0.00 35.63 3.28
5058 7441 1.152546 GACCTTGGGGCTGTTTGGT 60.153 57.895 0.00 0.00 35.63 3.67
5059 7442 0.759060 GACCTTGGGGCTGTTTGGTT 60.759 55.000 0.00 0.00 35.63 3.67
5060 7443 1.048160 ACCTTGGGGCTGTTTGGTTG 61.048 55.000 0.00 0.00 35.63 3.77
5061 7444 1.069596 CTTGGGGCTGTTTGGTTGC 59.930 57.895 0.00 0.00 0.00 4.17
5062 7445 1.382420 TTGGGGCTGTTTGGTTGCT 60.382 52.632 0.00 0.00 0.00 3.91
5063 7446 1.684386 TTGGGGCTGTTTGGTTGCTG 61.684 55.000 0.00 0.00 0.00 4.41
5064 7447 2.029518 GGGCTGTTTGGTTGCTGC 59.970 61.111 0.00 0.00 0.00 5.25
5065 7448 2.029518 GGCTGTTTGGTTGCTGCC 59.970 61.111 0.00 0.00 41.24 4.85
5066 7449 2.029518 GCTGTTTGGTTGCTGCCC 59.970 61.111 0.00 0.00 0.00 5.36
5067 7450 2.501602 GCTGTTTGGTTGCTGCCCT 61.502 57.895 0.00 0.00 0.00 5.19
5068 7451 1.364901 CTGTTTGGTTGCTGCCCTG 59.635 57.895 0.00 0.00 0.00 4.45
5069 7452 2.091102 CTGTTTGGTTGCTGCCCTGG 62.091 60.000 0.00 0.00 0.00 4.45
5070 7453 1.832167 GTTTGGTTGCTGCCCTGGA 60.832 57.895 0.00 0.00 0.00 3.86
5071 7454 1.531365 TTTGGTTGCTGCCCTGGAG 60.531 57.895 0.00 0.00 0.00 3.86
5072 7455 4.666253 TGGTTGCTGCCCTGGAGC 62.666 66.667 0.00 0.20 36.95 4.70
5073 7456 4.666253 GGTTGCTGCCCTGGAGCA 62.666 66.667 6.17 6.17 44.75 4.26
5076 7459 2.198150 TGCTGCCCTGGAGCAAAA 59.802 55.556 7.87 0.00 43.47 2.44
5077 7460 1.228956 TGCTGCCCTGGAGCAAAAT 60.229 52.632 7.87 0.00 43.47 1.82
5078 7461 1.252904 TGCTGCCCTGGAGCAAAATC 61.253 55.000 7.87 1.25 43.47 2.17
5079 7462 1.805254 CTGCCCTGGAGCAAAATCG 59.195 57.895 10.39 0.00 43.52 3.34
5080 7463 0.962356 CTGCCCTGGAGCAAAATCGT 60.962 55.000 10.39 0.00 43.52 3.73
5081 7464 0.960364 TGCCCTGGAGCAAAATCGTC 60.960 55.000 7.29 0.00 40.56 4.20
5082 7465 0.678048 GCCCTGGAGCAAAATCGTCT 60.678 55.000 0.00 0.00 0.00 4.18
5083 7466 1.089920 CCCTGGAGCAAAATCGTCTG 58.910 55.000 0.00 0.00 0.00 3.51
5084 7467 1.339055 CCCTGGAGCAAAATCGTCTGA 60.339 52.381 0.00 0.00 0.00 3.27
5085 7468 1.734465 CCTGGAGCAAAATCGTCTGAC 59.266 52.381 0.00 0.00 0.00 3.51
5086 7469 1.734465 CTGGAGCAAAATCGTCTGACC 59.266 52.381 1.55 0.00 0.00 4.02
5087 7470 1.347707 TGGAGCAAAATCGTCTGACCT 59.652 47.619 1.55 0.00 0.00 3.85
5088 7471 1.734465 GGAGCAAAATCGTCTGACCTG 59.266 52.381 1.55 0.00 0.00 4.00
5089 7472 2.612972 GGAGCAAAATCGTCTGACCTGA 60.613 50.000 1.55 0.00 0.00 3.86
5090 7473 2.413453 GAGCAAAATCGTCTGACCTGAC 59.587 50.000 1.55 0.00 0.00 3.51
5097 7480 3.896317 GTCTGACCTGACGCTTCTT 57.104 52.632 0.00 0.00 0.00 2.52
5098 7481 2.156343 GTCTGACCTGACGCTTCTTT 57.844 50.000 0.00 0.00 0.00 2.52
5099 7482 1.795286 GTCTGACCTGACGCTTCTTTG 59.205 52.381 0.00 0.00 0.00 2.77
5100 7483 1.686587 TCTGACCTGACGCTTCTTTGA 59.313 47.619 0.00 0.00 0.00 2.69
5101 7484 2.064762 CTGACCTGACGCTTCTTTGAG 58.935 52.381 0.00 0.00 0.00 3.02
5102 7485 1.686587 TGACCTGACGCTTCTTTGAGA 59.313 47.619 0.00 0.00 0.00 3.27
5103 7486 2.062519 GACCTGACGCTTCTTTGAGAC 58.937 52.381 0.00 0.00 0.00 3.36
5104 7487 1.063806 CCTGACGCTTCTTTGAGACG 58.936 55.000 0.00 0.00 0.00 4.18
5105 7488 1.603172 CCTGACGCTTCTTTGAGACGT 60.603 52.381 0.00 0.00 40.11 4.34
5106 7489 1.453524 CTGACGCTTCTTTGAGACGTG 59.546 52.381 0.00 0.00 37.05 4.49
5107 7490 0.161870 GACGCTTCTTTGAGACGTGC 59.838 55.000 0.00 0.00 37.05 5.34
5108 7491 1.222115 ACGCTTCTTTGAGACGTGCC 61.222 55.000 0.00 0.00 35.33 5.01
5109 7492 0.946221 CGCTTCTTTGAGACGTGCCT 60.946 55.000 0.00 0.00 0.00 4.75
5110 7493 0.514691 GCTTCTTTGAGACGTGCCTG 59.485 55.000 0.00 0.00 0.00 4.85
5111 7494 1.873903 GCTTCTTTGAGACGTGCCTGA 60.874 52.381 0.00 0.00 0.00 3.86
5112 7495 2.483876 CTTCTTTGAGACGTGCCTGAA 58.516 47.619 0.00 0.00 0.00 3.02
5113 7496 1.865865 TCTTTGAGACGTGCCTGAAC 58.134 50.000 0.00 0.00 0.00 3.18
5114 7497 0.868406 CTTTGAGACGTGCCTGAACC 59.132 55.000 0.00 0.00 0.00 3.62
5115 7498 0.534203 TTTGAGACGTGCCTGAACCC 60.534 55.000 0.00 0.00 0.00 4.11
5116 7499 1.407656 TTGAGACGTGCCTGAACCCT 61.408 55.000 0.00 0.00 0.00 4.34
5117 7500 1.374758 GAGACGTGCCTGAACCCTG 60.375 63.158 0.00 0.00 0.00 4.45
5118 7501 2.100879 GAGACGTGCCTGAACCCTGT 62.101 60.000 0.00 0.00 0.00 4.00
5119 7502 1.227853 GACGTGCCTGAACCCTGTT 60.228 57.895 0.00 0.00 0.00 3.16
5120 7503 0.818040 GACGTGCCTGAACCCTGTTT 60.818 55.000 0.00 0.00 0.00 2.83
5121 7504 1.101049 ACGTGCCTGAACCCTGTTTG 61.101 55.000 0.00 0.00 0.00 2.93
5122 7505 1.795170 CGTGCCTGAACCCTGTTTGG 61.795 60.000 0.00 0.00 0.00 3.28
5123 7506 0.755327 GTGCCTGAACCCTGTTTGGT 60.755 55.000 0.00 0.00 41.55 3.67
5131 7514 1.480789 ACCCTGTTTGGTTTGTGTCC 58.519 50.000 0.00 0.00 33.91 4.02
5132 7515 1.006639 ACCCTGTTTGGTTTGTGTCCT 59.993 47.619 0.00 0.00 33.91 3.85
5133 7516 1.408702 CCCTGTTTGGTTTGTGTCCTG 59.591 52.381 0.00 0.00 0.00 3.86
5134 7517 2.374184 CCTGTTTGGTTTGTGTCCTGA 58.626 47.619 0.00 0.00 0.00 3.86
5135 7518 2.757868 CCTGTTTGGTTTGTGTCCTGAA 59.242 45.455 0.00 0.00 0.00 3.02
5136 7519 3.181487 CCTGTTTGGTTTGTGTCCTGAAG 60.181 47.826 0.00 0.00 0.00 3.02
5137 7520 2.165437 TGTTTGGTTTGTGTCCTGAAGC 59.835 45.455 0.00 0.00 0.00 3.86
5138 7521 2.136298 TTGGTTTGTGTCCTGAAGCA 57.864 45.000 0.00 0.00 0.00 3.91
5139 7522 2.363306 TGGTTTGTGTCCTGAAGCAT 57.637 45.000 0.00 0.00 0.00 3.79
5140 7523 2.229792 TGGTTTGTGTCCTGAAGCATC 58.770 47.619 0.00 0.00 0.00 3.91
5141 7524 2.158623 TGGTTTGTGTCCTGAAGCATCT 60.159 45.455 0.00 0.00 0.00 2.90
5142 7525 2.227388 GGTTTGTGTCCTGAAGCATCTG 59.773 50.000 0.00 0.00 0.00 2.90
5143 7526 3.141398 GTTTGTGTCCTGAAGCATCTGA 58.859 45.455 0.00 0.00 0.00 3.27
5144 7527 2.462456 TGTGTCCTGAAGCATCTGAC 57.538 50.000 0.00 1.88 0.00 3.51
5145 7528 1.337167 TGTGTCCTGAAGCATCTGACG 60.337 52.381 0.00 0.00 33.46 4.35
5146 7529 0.390340 TGTCCTGAAGCATCTGACGC 60.390 55.000 0.00 0.00 33.46 5.19
5147 7530 0.108424 GTCCTGAAGCATCTGACGCT 60.108 55.000 0.00 0.00 42.98 5.07
5148 7531 1.135139 GTCCTGAAGCATCTGACGCTA 59.865 52.381 0.00 0.00 39.29 4.26
5149 7532 1.824852 TCCTGAAGCATCTGACGCTAA 59.175 47.619 0.00 0.00 39.29 3.09
5150 7533 1.929836 CCTGAAGCATCTGACGCTAAC 59.070 52.381 0.00 0.00 39.29 2.34
5151 7534 1.929836 CTGAAGCATCTGACGCTAACC 59.070 52.381 0.00 0.00 39.29 2.85
5152 7535 1.550524 TGAAGCATCTGACGCTAACCT 59.449 47.619 0.00 0.00 39.29 3.50
5153 7536 1.929836 GAAGCATCTGACGCTAACCTG 59.070 52.381 0.00 0.00 39.29 4.00
5154 7537 1.186200 AGCATCTGACGCTAACCTGA 58.814 50.000 0.00 0.00 38.15 3.86
5155 7538 1.134965 AGCATCTGACGCTAACCTGAC 60.135 52.381 0.00 0.00 38.15 3.51
5156 7539 1.927895 CATCTGACGCTAACCTGACC 58.072 55.000 0.00 0.00 0.00 4.02
5157 7540 1.478510 CATCTGACGCTAACCTGACCT 59.521 52.381 0.00 0.00 0.00 3.85
5158 7541 0.888619 TCTGACGCTAACCTGACCTG 59.111 55.000 0.00 0.00 0.00 4.00
5159 7542 0.737715 CTGACGCTAACCTGACCTGC 60.738 60.000 0.00 0.00 0.00 4.85
5160 7543 1.292223 GACGCTAACCTGACCTGCA 59.708 57.895 0.00 0.00 0.00 4.41
5161 7544 0.320421 GACGCTAACCTGACCTGCAA 60.320 55.000 0.00 0.00 0.00 4.08
5162 7545 0.107831 ACGCTAACCTGACCTGCAAA 59.892 50.000 0.00 0.00 0.00 3.68
5163 7546 1.234821 CGCTAACCTGACCTGCAAAA 58.765 50.000 0.00 0.00 0.00 2.44
5164 7547 1.197721 CGCTAACCTGACCTGCAAAAG 59.802 52.381 0.00 0.00 0.00 2.27
5175 7558 3.288809 CCTGCAAAAGGCTGACTAAAC 57.711 47.619 0.00 0.00 43.53 2.01
5176 7559 2.350772 CCTGCAAAAGGCTGACTAAACG 60.351 50.000 0.00 0.00 43.53 3.60
5177 7560 2.548057 CTGCAAAAGGCTGACTAAACGA 59.452 45.455 0.00 0.00 43.53 3.85
5178 7561 2.548057 TGCAAAAGGCTGACTAAACGAG 59.452 45.455 0.00 0.00 45.15 4.18
5179 7562 2.806244 GCAAAAGGCTGACTAAACGAGA 59.194 45.455 0.00 0.00 40.25 4.04
5180 7563 3.120511 GCAAAAGGCTGACTAAACGAGAG 60.121 47.826 0.00 0.00 40.25 3.20
5181 7564 5.564714 GCAAAAGGCTGACTAAACGAGAGT 61.565 45.833 0.00 0.00 43.83 3.24
5182 7565 7.525588 GCAAAAGGCTGACTAAACGAGAGTG 62.526 48.000 0.00 0.00 41.76 3.51
5191 7574 4.070552 ACGAGAGTGGCCTTCGGC 62.071 66.667 18.65 0.00 46.97 5.54
5206 7589 3.663202 GGCAACGTGGTTACCCTG 58.337 61.111 0.00 0.00 0.00 4.45
5207 7590 1.071814 GGCAACGTGGTTACCCTGA 59.928 57.895 0.00 0.00 0.00 3.86
5208 7591 0.953960 GGCAACGTGGTTACCCTGAG 60.954 60.000 0.00 0.00 0.00 3.35
5209 7592 0.250166 GCAACGTGGTTACCCTGAGT 60.250 55.000 0.00 0.00 0.00 3.41
5210 7593 1.792006 CAACGTGGTTACCCTGAGTC 58.208 55.000 0.00 0.00 0.00 3.36
5211 7594 1.069513 CAACGTGGTTACCCTGAGTCA 59.930 52.381 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 6.054295 ACATGTTGTATGTTGTGCCATTTTT 58.946 32.000 0.00 0.00 0.00 1.94
14 15 5.609423 ACATGTTGTATGTTGTGCCATTTT 58.391 33.333 0.00 0.00 0.00 1.82
15 16 5.212532 ACATGTTGTATGTTGTGCCATTT 57.787 34.783 0.00 0.00 0.00 2.32
16 17 4.870123 ACATGTTGTATGTTGTGCCATT 57.130 36.364 0.00 0.00 0.00 3.16
17 18 7.637631 TTATACATGTTGTATGTTGTGCCAT 57.362 32.000 2.30 0.00 42.93 4.40
18 19 7.391833 TCTTTATACATGTTGTATGTTGTGCCA 59.608 33.333 2.30 0.00 42.93 4.92
19 20 7.757526 TCTTTATACATGTTGTATGTTGTGCC 58.242 34.615 2.30 0.00 42.93 5.01
20 21 9.619316 TTTCTTTATACATGTTGTATGTTGTGC 57.381 29.630 2.30 0.00 42.93 4.57
25 26 8.966868 CCCCTTTTCTTTATACATGTTGTATGT 58.033 33.333 2.30 0.00 42.93 2.29
26 27 9.184523 TCCCCTTTTCTTTATACATGTTGTATG 57.815 33.333 2.30 0.00 42.93 2.39
27 28 9.762381 TTCCCCTTTTCTTTATACATGTTGTAT 57.238 29.630 2.30 5.56 44.89 2.29
28 29 9.589461 TTTCCCCTTTTCTTTATACATGTTGTA 57.411 29.630 2.30 0.00 37.24 2.41
29 30 8.485578 TTTCCCCTTTTCTTTATACATGTTGT 57.514 30.769 2.30 0.00 0.00 3.32
30 31 9.942850 ATTTTCCCCTTTTCTTTATACATGTTG 57.057 29.630 2.30 0.00 0.00 3.33
105 106 9.470399 AGTTATCGGGTTTACTAAATGGATTTT 57.530 29.630 0.00 0.00 0.00 1.82
106 107 8.899771 CAGTTATCGGGTTTACTAAATGGATTT 58.100 33.333 0.00 0.00 0.00 2.17
107 108 8.269317 TCAGTTATCGGGTTTACTAAATGGATT 58.731 33.333 0.00 0.00 0.00 3.01
108 109 7.798071 TCAGTTATCGGGTTTACTAAATGGAT 58.202 34.615 0.00 0.00 0.00 3.41
109 110 7.185318 TCAGTTATCGGGTTTACTAAATGGA 57.815 36.000 0.00 0.00 0.00 3.41
110 111 7.551617 ACTTCAGTTATCGGGTTTACTAAATGG 59.448 37.037 0.00 0.00 0.00 3.16
111 112 8.388103 CACTTCAGTTATCGGGTTTACTAAATG 58.612 37.037 0.00 0.00 0.00 2.32
112 113 7.065443 GCACTTCAGTTATCGGGTTTACTAAAT 59.935 37.037 0.00 0.00 0.00 1.40
113 114 6.369615 GCACTTCAGTTATCGGGTTTACTAAA 59.630 38.462 0.00 0.00 0.00 1.85
114 115 5.870978 GCACTTCAGTTATCGGGTTTACTAA 59.129 40.000 0.00 0.00 0.00 2.24
115 116 5.047164 TGCACTTCAGTTATCGGGTTTACTA 60.047 40.000 0.00 0.00 0.00 1.82
116 117 4.251268 GCACTTCAGTTATCGGGTTTACT 58.749 43.478 0.00 0.00 0.00 2.24
117 118 3.998341 TGCACTTCAGTTATCGGGTTTAC 59.002 43.478 0.00 0.00 0.00 2.01
118 119 3.998341 GTGCACTTCAGTTATCGGGTTTA 59.002 43.478 10.32 0.00 0.00 2.01
119 120 2.812011 GTGCACTTCAGTTATCGGGTTT 59.188 45.455 10.32 0.00 0.00 3.27
120 121 2.224426 TGTGCACTTCAGTTATCGGGTT 60.224 45.455 19.41 0.00 0.00 4.11
121 122 1.346395 TGTGCACTTCAGTTATCGGGT 59.654 47.619 19.41 0.00 0.00 5.28
122 123 2.093306 TGTGCACTTCAGTTATCGGG 57.907 50.000 19.41 0.00 0.00 5.14
720 721 0.884704 CTGACTGGTTGGGGTTCACG 60.885 60.000 0.00 0.00 0.00 4.35
806 812 4.098416 GGTTGCTACGCATTCAGAATTTC 58.902 43.478 0.00 0.00 38.76 2.17
807 813 3.505680 TGGTTGCTACGCATTCAGAATTT 59.494 39.130 0.00 0.00 38.76 1.82
808 814 3.081061 TGGTTGCTACGCATTCAGAATT 58.919 40.909 0.00 0.00 38.76 2.17
809 815 2.710377 TGGTTGCTACGCATTCAGAAT 58.290 42.857 0.00 0.00 38.76 2.40
810 816 2.177394 TGGTTGCTACGCATTCAGAA 57.823 45.000 0.00 0.00 38.76 3.02
881 888 2.221981 GCATAGCTACAATGGAAGACGC 59.778 50.000 0.00 0.00 0.00 5.19
917 952 7.500559 GCAGTTCAGATGGAAGGTAAAATAGAT 59.499 37.037 0.00 0.00 35.82 1.98
937 979 1.569479 GACCAGTTCGGCTGCAGTTC 61.569 60.000 16.64 7.34 43.71 3.01
938 980 1.598130 GACCAGTTCGGCTGCAGTT 60.598 57.895 16.64 0.00 43.71 3.16
939 981 2.031163 GACCAGTTCGGCTGCAGT 59.969 61.111 16.64 0.00 43.71 4.40
966 1008 3.715315 AGGAACTAACTTAGGGGGTATGC 59.285 47.826 0.88 0.00 36.02 3.14
981 1029 1.306997 CTCCCAGCCCCAGGAACTA 60.307 63.158 0.00 0.00 36.02 2.24
986 1048 1.992519 CTTCATCTCCCAGCCCCAGG 61.993 65.000 0.00 0.00 0.00 4.45
987 1049 0.984961 TCTTCATCTCCCAGCCCCAG 60.985 60.000 0.00 0.00 0.00 4.45
988 1050 0.549902 TTCTTCATCTCCCAGCCCCA 60.550 55.000 0.00 0.00 0.00 4.96
989 1051 0.182299 CTTCTTCATCTCCCAGCCCC 59.818 60.000 0.00 0.00 0.00 5.80
990 1052 1.134250 GTCTTCTTCATCTCCCAGCCC 60.134 57.143 0.00 0.00 0.00 5.19
991 1053 1.836802 AGTCTTCTTCATCTCCCAGCC 59.163 52.381 0.00 0.00 0.00 4.85
1022 1084 6.847956 TCAAAATTGGAATGCAAGAAGTTG 57.152 33.333 0.00 0.00 36.67 3.16
1023 1085 6.652062 GGATCAAAATTGGAATGCAAGAAGTT 59.348 34.615 0.00 0.00 0.00 2.66
1152 1217 0.112412 TGTTTGGGGAGAAGAAGCCC 59.888 55.000 0.00 0.00 43.91 5.19
1252 1317 3.385749 AAGTGGCGGCGATCGGATT 62.386 57.895 18.30 0.00 39.69 3.01
1284 1349 1.142667 TCAGAACTGTTGGTGATGGCA 59.857 47.619 0.00 0.00 0.00 4.92
1338 1403 0.817634 TGTTGTTCTTCACCGCCCAG 60.818 55.000 0.00 0.00 0.00 4.45
1352 1417 0.904649 TCCCATGCTCGAGATGTTGT 59.095 50.000 18.75 0.00 0.00 3.32
1360 1425 1.215382 CGACAACTCCCATGCTCGA 59.785 57.895 0.00 0.00 0.00 4.04
1495 1563 1.284982 CGGACAACACGAGCCTTCTG 61.285 60.000 0.00 0.00 0.00 3.02
1653 1721 0.681733 ATATGCCGCCACCTACTGAG 59.318 55.000 0.00 0.00 0.00 3.35
1665 1733 7.148641 AGAAGATAGTGTTCTTGTATATGCCG 58.851 38.462 0.00 0.00 36.10 5.69
1675 1743 7.101652 TCGCTTCATAGAAGATAGTGTTCTT 57.898 36.000 10.72 0.00 38.65 2.52
1871 1961 0.174162 GCTGAATGGGCCACATGAAC 59.826 55.000 9.28 0.00 40.44 3.18
1968 2059 4.042187 AGTTGCTTGGTTCTTCTACATCCT 59.958 41.667 0.00 0.00 0.00 3.24
1987 2078 1.444895 GCTTGCCGCATTCCAGTTG 60.445 57.895 0.00 0.00 38.92 3.16
2077 2173 0.436150 CACTCAGTCGTGCATTCGTG 59.564 55.000 0.00 0.00 0.00 4.35
2175 2271 0.827507 GCTCCCCTGTCCAAAGCAAA 60.828 55.000 0.00 0.00 33.21 3.68
2224 2320 1.157870 CGAAGGTGCAGGTTGTCGTT 61.158 55.000 0.00 0.00 0.00 3.85
2271 2373 9.561069 GCCAAGATAATAGAAGTTTAGAATGGA 57.439 33.333 0.00 0.00 0.00 3.41
2280 2382 7.130681 AGCTAGTGCCAAGATAATAGAAGTT 57.869 36.000 0.00 0.00 40.80 2.66
2281 2383 6.739331 AGCTAGTGCCAAGATAATAGAAGT 57.261 37.500 0.00 0.00 40.80 3.01
2359 2487 6.312180 GCGGTTACTGCTATACTGTTAAGTTT 59.688 38.462 9.17 0.00 37.88 2.66
2482 2697 3.660865 AGTGGTCCGTGAACTGAATAAC 58.339 45.455 0.00 0.00 0.00 1.89
2520 2735 5.447010 CGCAATCACCTTTTTCAAGCAAAAA 60.447 36.000 0.00 0.00 40.93 1.94
2525 2740 3.011949 TCGCAATCACCTTTTTCAAGC 57.988 42.857 0.00 0.00 0.00 4.01
2526 2741 6.529463 AATTTCGCAATCACCTTTTTCAAG 57.471 33.333 0.00 0.00 0.00 3.02
2529 2745 9.134734 TGTATAAATTTCGCAATCACCTTTTTC 57.865 29.630 0.00 0.00 0.00 2.29
2536 2752 9.236691 ACAATCATGTATAAATTTCGCAATCAC 57.763 29.630 0.00 0.00 38.24 3.06
2537 2753 9.800433 AACAATCATGTATAAATTTCGCAATCA 57.200 25.926 0.00 0.00 39.40 2.57
2582 2803 8.251383 TGGGACTACAATTTTTACCAATTTGA 57.749 30.769 0.00 0.00 0.00 2.69
2698 2923 7.656707 AATAACAATCACAAAATGAAGTGCC 57.343 32.000 0.00 0.00 41.93 5.01
2721 2947 7.960738 GCTTGCTAAAGATCAATACGTTGTTAA 59.039 33.333 0.00 0.00 35.19 2.01
2728 2955 5.449113 CGTTTGCTTGCTAAAGATCAATACG 59.551 40.000 0.00 0.00 35.19 3.06
2761 2991 5.009010 AGCATTGATCCGTTGTTGATATTCC 59.991 40.000 0.00 0.00 0.00 3.01
2763 2993 6.205464 CCTAGCATTGATCCGTTGTTGATATT 59.795 38.462 0.00 0.00 0.00 1.28
2765 2995 5.056480 CCTAGCATTGATCCGTTGTTGATA 58.944 41.667 0.00 0.00 0.00 2.15
2769 2999 3.627395 TCCTAGCATTGATCCGTTGTT 57.373 42.857 0.00 0.00 0.00 2.83
2800 3030 6.778821 TGTTCACCTCCAATTTCATTAGAGA 58.221 36.000 0.00 0.00 30.90 3.10
2801 3031 7.555554 AGATGTTCACCTCCAATTTCATTAGAG 59.444 37.037 0.00 0.00 0.00 2.43
2826 3056 5.909610 CGAAGCTAACAAAAGAAAAGTCCAG 59.090 40.000 0.00 0.00 0.00 3.86
2835 3065 7.414098 GGCAATATCTTCGAAGCTAACAAAAGA 60.414 37.037 20.56 0.00 0.00 2.52
2943 3306 9.461312 AGTATTTGCTACTAAAATTGTGGATGA 57.539 29.630 0.00 0.00 38.96 2.92
3019 5172 6.436261 CATGATTGCATCATCCTAAACTGTC 58.564 40.000 8.19 0.00 46.62 3.51
3363 5533 5.039333 GCCAATCAAGCACATATTGTCTTC 58.961 41.667 0.00 0.00 0.00 2.87
3412 5582 1.439543 AAAGAAGACCTCTGGCCACT 58.560 50.000 0.00 0.00 33.37 4.00
3684 5896 2.076863 GGTGACATGTAACCACTGCTC 58.923 52.381 25.49 0.00 34.05 4.26
4133 6357 8.608844 ATTCTTCACTTTCGAAATTCTGTAGT 57.391 30.769 11.70 0.40 0.00 2.73
4569 6936 8.578308 TTTTCAAGCTAAATGTTCATGAGTTG 57.422 30.769 0.00 0.00 0.00 3.16
4570 6937 9.768662 AATTTTCAAGCTAAATGTTCATGAGTT 57.231 25.926 0.00 0.00 0.00 3.01
4571 6938 9.768662 AAATTTTCAAGCTAAATGTTCATGAGT 57.231 25.926 0.00 0.00 0.00 3.41
4573 6940 9.761504 TGAAATTTTCAAGCTAAATGTTCATGA 57.238 25.926 9.36 0.00 36.59 3.07
4574 6941 9.801714 GTGAAATTTTCAAGCTAAATGTTCATG 57.198 29.630 13.21 0.00 42.15 3.07
4575 6942 9.545105 TGTGAAATTTTCAAGCTAAATGTTCAT 57.455 25.926 13.21 0.00 42.15 2.57
4576 6943 8.939201 TGTGAAATTTTCAAGCTAAATGTTCA 57.061 26.923 13.21 1.12 42.15 3.18
4580 6947 9.815936 GGATTTGTGAAATTTTCAAGCTAAATG 57.184 29.630 13.21 0.00 42.15 2.32
4581 6948 9.558396 TGGATTTGTGAAATTTTCAAGCTAAAT 57.442 25.926 13.21 15.26 42.15 1.40
4582 6949 8.954950 TGGATTTGTGAAATTTTCAAGCTAAA 57.045 26.923 13.21 12.00 42.15 1.85
4583 6950 9.206870 GATGGATTTGTGAAATTTTCAAGCTAA 57.793 29.630 13.21 6.31 42.15 3.09
4720 7103 2.445145 TGACCCAGAATGTTCCAAGGAA 59.555 45.455 0.00 0.00 0.00 3.36
4781 7164 1.078848 GCCGGTGCTGACTCAATCT 60.079 57.895 1.90 0.00 33.53 2.40
4784 7167 2.031012 CTGCCGGTGCTGACTCAA 59.969 61.111 1.90 0.00 38.61 3.02
4787 7170 0.957395 CATTTCTGCCGGTGCTGACT 60.957 55.000 1.90 0.00 44.00 3.41
4799 7182 6.496565 AGATGATAGACCTCCTACCATTTCTG 59.503 42.308 0.00 0.00 31.65 3.02
4807 7190 6.183360 ACGAAAACAGATGATAGACCTCCTAC 60.183 42.308 0.00 0.00 0.00 3.18
4833 7216 5.061064 GCGTTAGTCTGCCAGATAATAATCG 59.939 44.000 0.00 6.38 37.19 3.34
4846 7229 1.415374 TTGAACTCGCGTTAGTCTGC 58.585 50.000 5.77 0.00 32.39 4.26
4856 7239 2.857748 CCCAAAAACACTTTGAACTCGC 59.142 45.455 0.00 0.00 0.00 5.03
4877 7260 1.369091 ATGTCATTCTTGGCCGTCGC 61.369 55.000 0.00 0.00 0.00 5.19
4886 7269 3.499338 TCCCTTTGTGCATGTCATTCTT 58.501 40.909 0.00 0.00 0.00 2.52
4893 7276 1.187567 GGGCTTCCCTTTGTGCATGT 61.188 55.000 0.00 0.00 41.34 3.21
4895 7278 0.252375 ATGGGCTTCCCTTTGTGCAT 60.252 50.000 3.27 0.00 45.70 3.96
4912 7295 1.294780 GCCGGATAGGAGGAGCATG 59.705 63.158 5.05 0.00 45.00 4.06
4947 7330 2.325761 CTTCAAGACACCGGAACTACG 58.674 52.381 9.46 0.00 0.00 3.51
4948 7331 2.067013 GCTTCAAGACACCGGAACTAC 58.933 52.381 9.46 0.00 0.00 2.73
4949 7332 1.336517 CGCTTCAAGACACCGGAACTA 60.337 52.381 9.46 0.00 0.00 2.24
4950 7333 0.600255 CGCTTCAAGACACCGGAACT 60.600 55.000 9.46 0.44 0.00 3.01
4951 7334 1.566018 CCGCTTCAAGACACCGGAAC 61.566 60.000 9.46 0.00 41.34 3.62
4952 7335 1.301401 CCGCTTCAAGACACCGGAA 60.301 57.895 9.46 0.00 41.34 4.30
4953 7336 2.342279 CCGCTTCAAGACACCGGA 59.658 61.111 9.46 0.00 41.34 5.14
4954 7337 3.423154 GCCGCTTCAAGACACCGG 61.423 66.667 0.00 0.00 41.72 5.28
4955 7338 3.423154 GGCCGCTTCAAGACACCG 61.423 66.667 0.00 0.00 0.00 4.94
4956 7339 3.423154 CGGCCGCTTCAAGACACC 61.423 66.667 14.67 0.00 0.00 4.16
4957 7340 3.423154 CCGGCCGCTTCAAGACAC 61.423 66.667 22.85 0.00 0.00 3.67
4971 7354 3.834799 GACGGTCTGGGTAGCCGG 61.835 72.222 13.97 13.97 43.35 6.13
4972 7355 2.423898 ATGACGGTCTGGGTAGCCG 61.424 63.158 9.88 1.40 44.08 5.52
4973 7356 1.144057 CATGACGGTCTGGGTAGCC 59.856 63.158 9.88 3.29 0.00 3.93
4974 7357 1.521681 GCATGACGGTCTGGGTAGC 60.522 63.158 9.88 1.19 0.00 3.58
4975 7358 1.226974 CGCATGACGGTCTGGGTAG 60.227 63.158 9.88 0.00 38.44 3.18
4976 7359 1.679641 TCGCATGACGGTCTGGGTA 60.680 57.895 9.88 2.52 43.89 3.69
4977 7360 2.994995 TCGCATGACGGTCTGGGT 60.995 61.111 9.88 0.00 43.89 4.51
4978 7361 2.509336 GTCGCATGACGGTCTGGG 60.509 66.667 9.88 12.54 43.89 4.45
4986 7369 1.687494 GGCTTGTCGAGTCGCATGAC 61.687 60.000 19.43 15.47 45.86 3.06
4987 7370 1.446099 GGCTTGTCGAGTCGCATGA 60.446 57.895 19.43 0.00 0.00 3.07
4988 7371 3.084579 GGCTTGTCGAGTCGCATG 58.915 61.111 7.92 12.08 0.00 4.06
4993 7376 0.455295 CTCTCACGGCTTGTCGAGTC 60.455 60.000 0.45 0.00 31.63 3.36
4994 7377 0.889638 TCTCTCACGGCTTGTCGAGT 60.890 55.000 0.45 0.00 31.63 4.18
4995 7378 0.455295 GTCTCTCACGGCTTGTCGAG 60.455 60.000 0.45 0.00 0.00 4.04
4996 7379 1.579932 GTCTCTCACGGCTTGTCGA 59.420 57.895 0.45 0.00 0.00 4.20
4997 7380 1.797933 CGTCTCTCACGGCTTGTCG 60.798 63.158 0.00 0.00 45.46 4.35
4998 7381 4.154613 CGTCTCTCACGGCTTGTC 57.845 61.111 0.00 0.00 45.46 3.18
5015 7398 7.067615 TCTCTAAGAGATTGGTAGTGATGTCAC 59.932 40.741 5.01 5.01 39.21 3.67
5016 7399 7.067615 GTCTCTAAGAGATTGGTAGTGATGTCA 59.932 40.741 0.00 0.00 40.98 3.58
5017 7400 7.422399 GTCTCTAAGAGATTGGTAGTGATGTC 58.578 42.308 0.00 0.00 40.98 3.06
5018 7401 6.322712 GGTCTCTAAGAGATTGGTAGTGATGT 59.677 42.308 0.00 0.00 40.98 3.06
5019 7402 6.549364 AGGTCTCTAAGAGATTGGTAGTGATG 59.451 42.308 0.00 0.00 40.98 3.07
5020 7403 6.678547 AGGTCTCTAAGAGATTGGTAGTGAT 58.321 40.000 0.00 0.00 40.98 3.06
5021 7404 6.080969 AGGTCTCTAAGAGATTGGTAGTGA 57.919 41.667 0.00 0.00 40.98 3.41
5022 7405 6.406400 CCAAGGTCTCTAAGAGATTGGTAGTG 60.406 46.154 16.38 0.00 40.82 2.74
5023 7406 5.659079 CCAAGGTCTCTAAGAGATTGGTAGT 59.341 44.000 16.38 0.00 40.82 2.73
5024 7407 5.069781 CCCAAGGTCTCTAAGAGATTGGTAG 59.930 48.000 20.10 9.30 42.59 3.18
5025 7408 4.962995 CCCAAGGTCTCTAAGAGATTGGTA 59.037 45.833 20.10 0.00 42.59 3.25
5026 7409 3.777522 CCCAAGGTCTCTAAGAGATTGGT 59.222 47.826 20.10 0.00 42.59 3.67
5027 7410 3.135530 CCCCAAGGTCTCTAAGAGATTGG 59.864 52.174 17.15 17.15 43.21 3.16
5028 7411 3.432890 GCCCCAAGGTCTCTAAGAGATTG 60.433 52.174 0.00 3.42 40.98 2.67
5029 7412 2.774809 GCCCCAAGGTCTCTAAGAGATT 59.225 50.000 0.00 0.00 40.98 2.40
5030 7413 2.022527 AGCCCCAAGGTCTCTAAGAGAT 60.023 50.000 0.00 0.00 40.98 2.75
5031 7414 1.362932 AGCCCCAAGGTCTCTAAGAGA 59.637 52.381 0.00 0.00 36.22 3.10
5032 7415 1.484240 CAGCCCCAAGGTCTCTAAGAG 59.516 57.143 0.00 0.00 34.57 2.85
5033 7416 1.203313 ACAGCCCCAAGGTCTCTAAGA 60.203 52.381 0.00 0.00 34.57 2.10
5034 7417 1.280457 ACAGCCCCAAGGTCTCTAAG 58.720 55.000 0.00 0.00 34.57 2.18
5035 7418 1.742308 AACAGCCCCAAGGTCTCTAA 58.258 50.000 0.00 0.00 34.57 2.10
5036 7419 1.351017 CAAACAGCCCCAAGGTCTCTA 59.649 52.381 0.00 0.00 34.57 2.43
5037 7420 0.111253 CAAACAGCCCCAAGGTCTCT 59.889 55.000 0.00 0.00 34.57 3.10
5038 7421 0.895559 CCAAACAGCCCCAAGGTCTC 60.896 60.000 0.00 0.00 34.57 3.36
5039 7422 1.153756 CCAAACAGCCCCAAGGTCT 59.846 57.895 0.00 0.00 34.57 3.85
5040 7423 0.759060 AACCAAACAGCCCCAAGGTC 60.759 55.000 0.00 0.00 34.57 3.85
5041 7424 1.048160 CAACCAAACAGCCCCAAGGT 61.048 55.000 0.00 0.00 34.57 3.50
5042 7425 1.747774 CAACCAAACAGCCCCAAGG 59.252 57.895 0.00 0.00 0.00 3.61
5043 7426 1.069596 GCAACCAAACAGCCCCAAG 59.930 57.895 0.00 0.00 0.00 3.61
5044 7427 1.382420 AGCAACCAAACAGCCCCAA 60.382 52.632 0.00 0.00 0.00 4.12
5045 7428 2.132996 CAGCAACCAAACAGCCCCA 61.133 57.895 0.00 0.00 0.00 4.96
5046 7429 2.736531 CAGCAACCAAACAGCCCC 59.263 61.111 0.00 0.00 0.00 5.80
5047 7430 2.029518 GCAGCAACCAAACAGCCC 59.970 61.111 0.00 0.00 0.00 5.19
5048 7431 2.029518 GGCAGCAACCAAACAGCC 59.970 61.111 0.00 0.00 34.71 4.85
5049 7432 2.029518 GGGCAGCAACCAAACAGC 59.970 61.111 0.00 0.00 0.00 4.40
5050 7433 1.364901 CAGGGCAGCAACCAAACAG 59.635 57.895 0.00 0.00 0.00 3.16
5051 7434 2.132996 CCAGGGCAGCAACCAAACA 61.133 57.895 0.00 0.00 0.00 2.83
5052 7435 1.809567 CTCCAGGGCAGCAACCAAAC 61.810 60.000 0.00 0.00 0.00 2.93
5053 7436 1.531365 CTCCAGGGCAGCAACCAAA 60.531 57.895 0.00 0.00 0.00 3.28
5054 7437 2.115910 CTCCAGGGCAGCAACCAA 59.884 61.111 0.00 0.00 0.00 3.67
5055 7438 4.666253 GCTCCAGGGCAGCAACCA 62.666 66.667 0.00 0.00 36.82 3.67
5056 7439 4.666253 TGCTCCAGGGCAGCAACC 62.666 66.667 0.12 0.00 44.02 3.77
5059 7442 1.228956 ATTTTGCTCCAGGGCAGCA 60.229 52.632 0.00 0.00 45.32 4.41
5060 7443 1.514553 GATTTTGCTCCAGGGCAGC 59.485 57.895 0.00 0.00 43.39 5.25
5061 7444 0.962356 ACGATTTTGCTCCAGGGCAG 60.962 55.000 0.00 0.00 43.39 4.85
5062 7445 0.960364 GACGATTTTGCTCCAGGGCA 60.960 55.000 0.00 0.00 40.74 5.36
5063 7446 0.678048 AGACGATTTTGCTCCAGGGC 60.678 55.000 0.00 0.00 0.00 5.19
5064 7447 1.089920 CAGACGATTTTGCTCCAGGG 58.910 55.000 0.00 0.00 0.00 4.45
5065 7448 1.734465 GTCAGACGATTTTGCTCCAGG 59.266 52.381 0.00 0.00 0.00 4.45
5066 7449 1.734465 GGTCAGACGATTTTGCTCCAG 59.266 52.381 0.00 0.00 0.00 3.86
5067 7450 1.347707 AGGTCAGACGATTTTGCTCCA 59.652 47.619 0.00 0.00 0.00 3.86
5068 7451 1.734465 CAGGTCAGACGATTTTGCTCC 59.266 52.381 0.00 0.00 0.00 4.70
5069 7452 2.413453 GTCAGGTCAGACGATTTTGCTC 59.587 50.000 0.00 0.00 0.00 4.26
5070 7453 2.417719 GTCAGGTCAGACGATTTTGCT 58.582 47.619 0.00 0.00 0.00 3.91
5071 7454 2.882742 GTCAGGTCAGACGATTTTGC 57.117 50.000 0.00 0.00 0.00 3.68
5079 7462 1.795286 CAAAGAAGCGTCAGGTCAGAC 59.205 52.381 1.61 0.00 35.19 3.51
5080 7463 1.686587 TCAAAGAAGCGTCAGGTCAGA 59.313 47.619 1.61 0.00 0.00 3.27
5081 7464 2.064762 CTCAAAGAAGCGTCAGGTCAG 58.935 52.381 1.61 0.00 0.00 3.51
5082 7465 1.686587 TCTCAAAGAAGCGTCAGGTCA 59.313 47.619 1.61 0.00 0.00 4.02
5083 7466 2.062519 GTCTCAAAGAAGCGTCAGGTC 58.937 52.381 1.61 0.00 0.00 3.85
5084 7467 1.603172 CGTCTCAAAGAAGCGTCAGGT 60.603 52.381 1.61 0.00 0.00 4.00
5085 7468 1.063806 CGTCTCAAAGAAGCGTCAGG 58.936 55.000 1.61 0.00 0.00 3.86
5086 7469 1.453524 CACGTCTCAAAGAAGCGTCAG 59.546 52.381 1.61 0.00 33.28 3.51
5087 7470 1.487482 CACGTCTCAAAGAAGCGTCA 58.513 50.000 1.61 0.00 33.28 4.35
5088 7471 0.161870 GCACGTCTCAAAGAAGCGTC 59.838 55.000 0.00 0.00 33.28 5.19
5089 7472 1.222115 GGCACGTCTCAAAGAAGCGT 61.222 55.000 0.00 0.00 36.13 5.07
5090 7473 0.946221 AGGCACGTCTCAAAGAAGCG 60.946 55.000 0.00 0.00 0.00 4.68
5091 7474 0.514691 CAGGCACGTCTCAAAGAAGC 59.485 55.000 0.00 0.00 0.00 3.86
5092 7475 2.154854 TCAGGCACGTCTCAAAGAAG 57.845 50.000 0.00 0.00 0.00 2.85
5093 7476 2.210116 GTTCAGGCACGTCTCAAAGAA 58.790 47.619 0.00 0.00 0.00 2.52
5094 7477 1.540363 GGTTCAGGCACGTCTCAAAGA 60.540 52.381 0.00 0.00 0.00 2.52
5095 7478 0.868406 GGTTCAGGCACGTCTCAAAG 59.132 55.000 0.00 0.00 0.00 2.77
5096 7479 0.534203 GGGTTCAGGCACGTCTCAAA 60.534 55.000 0.00 0.00 0.00 2.69
5097 7480 1.070786 GGGTTCAGGCACGTCTCAA 59.929 57.895 0.00 0.00 0.00 3.02
5098 7481 1.837051 AGGGTTCAGGCACGTCTCA 60.837 57.895 0.00 0.00 0.00 3.27
5099 7482 1.374758 CAGGGTTCAGGCACGTCTC 60.375 63.158 0.00 0.00 0.00 3.36
5100 7483 1.696097 AACAGGGTTCAGGCACGTCT 61.696 55.000 0.00 0.00 0.00 4.18
5101 7484 0.818040 AAACAGGGTTCAGGCACGTC 60.818 55.000 0.00 0.00 0.00 4.34
5102 7485 1.101049 CAAACAGGGTTCAGGCACGT 61.101 55.000 0.00 0.00 0.00 4.49
5103 7486 1.654220 CAAACAGGGTTCAGGCACG 59.346 57.895 0.00 0.00 0.00 5.34
5104 7487 0.755327 ACCAAACAGGGTTCAGGCAC 60.755 55.000 0.00 0.00 43.89 5.01
5105 7488 1.618030 ACCAAACAGGGTTCAGGCA 59.382 52.632 0.00 0.00 43.89 4.75
5106 7489 4.599036 ACCAAACAGGGTTCAGGC 57.401 55.556 0.00 0.00 43.89 4.85
5112 7495 1.006639 AGGACACAAACCAAACAGGGT 59.993 47.619 0.00 0.00 45.04 4.34
5113 7496 1.408702 CAGGACACAAACCAAACAGGG 59.591 52.381 0.00 0.00 43.89 4.45
5114 7497 2.374184 TCAGGACACAAACCAAACAGG 58.626 47.619 0.00 0.00 45.67 4.00
5115 7498 3.734902 GCTTCAGGACACAAACCAAACAG 60.735 47.826 0.00 0.00 0.00 3.16
5116 7499 2.165437 GCTTCAGGACACAAACCAAACA 59.835 45.455 0.00 0.00 0.00 2.83
5117 7500 2.165437 TGCTTCAGGACACAAACCAAAC 59.835 45.455 0.00 0.00 0.00 2.93
5118 7501 2.451490 TGCTTCAGGACACAAACCAAA 58.549 42.857 0.00 0.00 0.00 3.28
5119 7502 2.136298 TGCTTCAGGACACAAACCAA 57.864 45.000 0.00 0.00 0.00 3.67
5120 7503 2.158623 AGATGCTTCAGGACACAAACCA 60.159 45.455 2.07 0.00 0.00 3.67
5121 7504 2.227388 CAGATGCTTCAGGACACAAACC 59.773 50.000 2.07 0.00 0.00 3.27
5122 7505 3.058639 GTCAGATGCTTCAGGACACAAAC 60.059 47.826 15.18 0.00 32.05 2.93
5123 7506 3.141398 GTCAGATGCTTCAGGACACAAA 58.859 45.455 15.18 0.00 32.05 2.83
5124 7507 2.771089 GTCAGATGCTTCAGGACACAA 58.229 47.619 15.18 0.00 32.05 3.33
5125 7508 1.337167 CGTCAGATGCTTCAGGACACA 60.337 52.381 18.17 0.00 31.53 3.72
5126 7509 1.354040 CGTCAGATGCTTCAGGACAC 58.646 55.000 18.17 0.83 31.53 3.67
5127 7510 0.390340 GCGTCAGATGCTTCAGGACA 60.390 55.000 18.17 0.00 31.53 4.02
5128 7511 0.108424 AGCGTCAGATGCTTCAGGAC 60.108 55.000 11.71 11.87 37.07 3.85
5129 7512 1.474330 TAGCGTCAGATGCTTCAGGA 58.526 50.000 22.39 0.92 41.42 3.86
5130 7513 1.929836 GTTAGCGTCAGATGCTTCAGG 59.070 52.381 22.39 0.00 41.42 3.86
5131 7514 1.929836 GGTTAGCGTCAGATGCTTCAG 59.070 52.381 22.39 0.00 41.42 3.02
5132 7515 1.550524 AGGTTAGCGTCAGATGCTTCA 59.449 47.619 22.39 7.24 41.42 3.02
5133 7516 1.929836 CAGGTTAGCGTCAGATGCTTC 59.070 52.381 22.39 14.91 41.42 3.86
5134 7517 1.550524 TCAGGTTAGCGTCAGATGCTT 59.449 47.619 22.39 7.08 41.42 3.91
5135 7518 1.134965 GTCAGGTTAGCGTCAGATGCT 60.135 52.381 21.04 21.04 43.91 3.79
5136 7519 1.281899 GTCAGGTTAGCGTCAGATGC 58.718 55.000 6.49 6.49 0.00 3.91
5137 7520 1.478510 AGGTCAGGTTAGCGTCAGATG 59.521 52.381 0.00 0.00 0.00 2.90
5138 7521 1.478510 CAGGTCAGGTTAGCGTCAGAT 59.521 52.381 0.00 0.00 0.00 2.90
5139 7522 0.888619 CAGGTCAGGTTAGCGTCAGA 59.111 55.000 0.00 0.00 0.00 3.27
5140 7523 0.737715 GCAGGTCAGGTTAGCGTCAG 60.738 60.000 0.00 0.00 0.00 3.51
5141 7524 1.292223 GCAGGTCAGGTTAGCGTCA 59.708 57.895 0.00 0.00 0.00 4.35
5142 7525 0.320421 TTGCAGGTCAGGTTAGCGTC 60.320 55.000 0.00 0.00 0.00 5.19
5143 7526 0.107831 TTTGCAGGTCAGGTTAGCGT 59.892 50.000 0.00 0.00 0.00 5.07
5144 7527 1.197721 CTTTTGCAGGTCAGGTTAGCG 59.802 52.381 0.00 0.00 0.00 4.26
5145 7528 1.541588 CCTTTTGCAGGTCAGGTTAGC 59.458 52.381 0.00 0.00 37.99 3.09
5146 7529 1.541588 GCCTTTTGCAGGTCAGGTTAG 59.458 52.381 4.92 0.00 46.07 2.34
5147 7530 1.144913 AGCCTTTTGCAGGTCAGGTTA 59.855 47.619 4.92 0.00 46.07 2.85
5148 7531 0.106015 AGCCTTTTGCAGGTCAGGTT 60.106 50.000 4.92 0.00 46.07 3.50
5149 7532 0.825010 CAGCCTTTTGCAGGTCAGGT 60.825 55.000 4.92 0.00 46.07 4.00
5150 7533 0.538057 TCAGCCTTTTGCAGGTCAGG 60.538 55.000 0.00 0.00 46.07 3.86
5151 7534 0.595095 GTCAGCCTTTTGCAGGTCAG 59.405 55.000 0.00 0.00 46.07 3.51
5152 7535 0.183492 AGTCAGCCTTTTGCAGGTCA 59.817 50.000 0.00 0.00 46.07 4.02
5153 7536 2.185004 TAGTCAGCCTTTTGCAGGTC 57.815 50.000 0.00 0.00 46.07 3.85
5154 7537 2.623416 GTTTAGTCAGCCTTTTGCAGGT 59.377 45.455 0.00 0.00 46.07 4.00
5156 7539 2.548057 TCGTTTAGTCAGCCTTTTGCAG 59.452 45.455 0.00 0.00 44.83 4.41
5157 7540 2.548057 CTCGTTTAGTCAGCCTTTTGCA 59.452 45.455 0.00 0.00 44.83 4.08
5158 7541 2.806244 TCTCGTTTAGTCAGCCTTTTGC 59.194 45.455 0.00 0.00 41.71 3.68
5159 7542 4.058817 ACTCTCGTTTAGTCAGCCTTTTG 58.941 43.478 0.00 0.00 0.00 2.44
5160 7543 4.058817 CACTCTCGTTTAGTCAGCCTTTT 58.941 43.478 0.00 0.00 0.00 2.27
5161 7544 3.555168 CCACTCTCGTTTAGTCAGCCTTT 60.555 47.826 0.00 0.00 0.00 3.11
5162 7545 2.028930 CCACTCTCGTTTAGTCAGCCTT 60.029 50.000 0.00 0.00 0.00 4.35
5163 7546 1.546476 CCACTCTCGTTTAGTCAGCCT 59.454 52.381 0.00 0.00 0.00 4.58
5164 7547 1.997669 CCACTCTCGTTTAGTCAGCC 58.002 55.000 0.00 0.00 0.00 4.85
5165 7548 1.351153 GCCACTCTCGTTTAGTCAGC 58.649 55.000 0.00 0.00 0.00 4.26
5166 7549 1.546476 AGGCCACTCTCGTTTAGTCAG 59.454 52.381 5.01 0.00 0.00 3.51
5167 7550 1.629043 AGGCCACTCTCGTTTAGTCA 58.371 50.000 5.01 0.00 0.00 3.41
5168 7551 2.608268 GAAGGCCACTCTCGTTTAGTC 58.392 52.381 5.01 0.00 0.00 2.59
5169 7552 1.067776 CGAAGGCCACTCTCGTTTAGT 60.068 52.381 5.01 0.00 0.00 2.24
5170 7553 1.630148 CGAAGGCCACTCTCGTTTAG 58.370 55.000 5.01 0.00 0.00 1.85
5171 7554 0.245539 CCGAAGGCCACTCTCGTTTA 59.754 55.000 5.01 0.00 46.14 2.01
5172 7555 1.004918 CCGAAGGCCACTCTCGTTT 60.005 57.895 5.01 0.00 46.14 3.60
5173 7556 2.657237 CCGAAGGCCACTCTCGTT 59.343 61.111 5.01 0.00 46.14 3.85
5185 7568 1.864176 GGTAACCACGTTGCCGAAG 59.136 57.895 0.00 0.00 38.39 3.79
5186 7569 4.046276 GGTAACCACGTTGCCGAA 57.954 55.556 0.00 0.00 38.39 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.