Multiple sequence alignment - TraesCS2A01G485000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G485000 chr2A 100.000 3132 0 0 1 3132 719992376 719995507 0.000000e+00 5784.0
1 TraesCS2A01G485000 chr2A 90.947 243 19 3 1900 2139 750581239 750580997 1.080000e-84 324.0
2 TraesCS2A01G485000 chr2A 90.947 243 19 3 1900 2139 750617284 750617042 1.080000e-84 324.0
3 TraesCS2A01G485000 chr2A 91.561 237 17 3 1900 2133 750745320 750745556 1.080000e-84 324.0
4 TraesCS2A01G485000 chr2A 88.152 211 22 1 995 1202 750582038 750581828 6.710000e-62 248.0
5 TraesCS2A01G485000 chr2A 88.152 211 22 1 995 1202 750618083 750617873 6.710000e-62 248.0
6 TraesCS2A01G485000 chr2A 88.293 205 21 1 995 1196 750744521 750744725 3.120000e-60 243.0
7 TraesCS2A01G485000 chr2A 91.729 133 10 1 3 134 621482929 621483061 1.920000e-42 183.0
8 TraesCS2A01G485000 chr5A 98.039 714 13 1 2419 3132 29309159 29309871 0.000000e+00 1240.0
9 TraesCS2A01G485000 chr5A 91.254 686 39 10 2419 3095 395000830 395000157 0.000000e+00 915.0
10 TraesCS2A01G485000 chr5A 91.667 132 10 1 3 133 425009599 425009468 6.900000e-42 182.0
11 TraesCS2A01G485000 chr2B 88.072 830 56 16 1533 2328 707377619 707378439 0.000000e+00 944.0
12 TraesCS2A01G485000 chr2B 90.499 421 27 5 350 760 707376685 707377102 7.640000e-151 544.0
13 TraesCS2A01G485000 chr2B 86.052 466 34 18 748 1211 707377125 707377561 3.660000e-129 472.0
14 TraesCS2A01G485000 chr2B 91.701 241 17 2 1902 2139 758389862 758389622 6.470000e-87 331.0
15 TraesCS2A01G485000 chr2B 91.915 235 16 2 1902 2133 758147496 758147262 3.010000e-85 326.0
16 TraesCS2A01G485000 chr2B 93.976 83 3 2 209 290 707376604 707376685 1.180000e-24 124.0
17 TraesCS2A01G485000 chr2D 89.863 730 40 9 493 1211 585859895 585860601 0.000000e+00 907.0
18 TraesCS2A01G485000 chr2D 84.673 933 64 29 1530 2411 585860652 585861556 0.000000e+00 857.0
19 TraesCS2A01G485000 chr2D 91.561 237 17 2 1900 2133 619426472 619426236 1.080000e-84 324.0
20 TraesCS2A01G485000 chr2D 90.947 243 19 3 1900 2139 619436529 619436287 1.080000e-84 324.0
21 TraesCS2A01G485000 chr2D 87.963 216 22 2 984 1196 620614034 620614248 5.190000e-63 252.0
22 TraesCS2A01G485000 chr2D 86.957 138 15 2 361 495 585859674 585859811 5.410000e-33 152.0
23 TraesCS2A01G485000 chr4B 90.962 686 41 9 2418 3095 526935800 526935128 0.000000e+00 904.0
24 TraesCS2A01G485000 chr4B 83.276 586 68 14 2482 3052 25419562 25420132 2.150000e-141 512.0
25 TraesCS2A01G485000 chr4B 90.370 135 12 1 1 134 476260513 476260379 3.210000e-40 176.0
26 TraesCS2A01G485000 chr3B 90.593 691 43 11 2415 3095 605275851 605275173 0.000000e+00 896.0
27 TraesCS2A01G485000 chr3B 89.796 196 20 0 1004 1199 6533020 6533215 5.190000e-63 252.0
28 TraesCS2A01G485000 chr3B 89.474 57 3 2 2404 2460 586432542 586432595 5.600000e-08 69.4
29 TraesCS2A01G485000 chr1B 90.762 682 43 9 2419 3092 229486188 229486857 0.000000e+00 893.0
30 TraesCS2A01G485000 chr5B 88.393 672 53 15 2419 3079 634130127 634129470 0.000000e+00 785.0
31 TraesCS2A01G485000 chr5B 89.655 58 4 2 2403 2460 672254726 672254671 4.330000e-09 73.1
32 TraesCS2A01G485000 chr3D 89.552 201 20 1 1003 1203 4138773 4138972 1.440000e-63 254.0
33 TraesCS2A01G485000 chr3D 89.340 197 21 0 1003 1199 4134351 4134547 6.710000e-62 248.0
34 TraesCS2A01G485000 chr4D 90.977 133 11 1 3 134 56741304 56741172 8.930000e-41 178.0
35 TraesCS2A01G485000 chr6A 90.226 133 12 1 3 134 416644624 416644756 4.150000e-39 172.0
36 TraesCS2A01G485000 chr5D 90.226 133 12 1 3 134 65117276 65117408 4.150000e-39 172.0
37 TraesCS2A01G485000 chr4A 90.226 133 12 1 3 134 617657253 617657385 4.150000e-39 172.0
38 TraesCS2A01G485000 chr4A 91.111 45 4 0 165 209 34296137 34296093 9.380000e-06 62.1
39 TraesCS2A01G485000 chr1A 90.226 133 12 1 3 134 527245810 527245942 4.150000e-39 172.0
40 TraesCS2A01G485000 chr1A 90.226 133 12 1 3 134 535196518 535196386 4.150000e-39 172.0
41 TraesCS2A01G485000 chr1A 88.889 45 5 0 2419 2463 13828814 13828770 4.360000e-04 56.5
42 TraesCS2A01G485000 chr7B 91.379 58 5 0 155 212 715547949 715547892 2.590000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G485000 chr2A 719992376 719995507 3131 False 5784.000000 5784 100.000000 1 3132 1 chr2A.!!$F2 3131
1 TraesCS2A01G485000 chr2A 750580997 750582038 1041 True 286.000000 324 89.549500 995 2139 2 chr2A.!!$R1 1144
2 TraesCS2A01G485000 chr2A 750617042 750618083 1041 True 286.000000 324 89.549500 995 2139 2 chr2A.!!$R2 1144
3 TraesCS2A01G485000 chr2A 750744521 750745556 1035 False 283.500000 324 89.927000 995 2133 2 chr2A.!!$F3 1138
4 TraesCS2A01G485000 chr5A 29309159 29309871 712 False 1240.000000 1240 98.039000 2419 3132 1 chr5A.!!$F1 713
5 TraesCS2A01G485000 chr5A 395000157 395000830 673 True 915.000000 915 91.254000 2419 3095 1 chr5A.!!$R1 676
6 TraesCS2A01G485000 chr2B 707376604 707378439 1835 False 521.000000 944 89.649750 209 2328 4 chr2B.!!$F1 2119
7 TraesCS2A01G485000 chr2D 585859674 585861556 1882 False 638.666667 907 87.164333 361 2411 3 chr2D.!!$F2 2050
8 TraesCS2A01G485000 chr4B 526935128 526935800 672 True 904.000000 904 90.962000 2418 3095 1 chr4B.!!$R2 677
9 TraesCS2A01G485000 chr4B 25419562 25420132 570 False 512.000000 512 83.276000 2482 3052 1 chr4B.!!$F1 570
10 TraesCS2A01G485000 chr3B 605275173 605275851 678 True 896.000000 896 90.593000 2415 3095 1 chr3B.!!$R1 680
11 TraesCS2A01G485000 chr1B 229486188 229486857 669 False 893.000000 893 90.762000 2419 3092 1 chr1B.!!$F1 673
12 TraesCS2A01G485000 chr5B 634129470 634130127 657 True 785.000000 785 88.393000 2419 3079 1 chr5B.!!$R1 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
593 689 0.034896 AAGTCCGTACTTGGTGCCAG 59.965 55.0 0.0 0.0 44.4 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2370 2736 0.396811 AGGGTGACGAAGGGTGAAAG 59.603 55.0 0.0 0.0 0.0 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.449719 GAAATTATGAAAAGAGGTTGGAGTAGA 57.550 33.333 0.00 0.00 0.00 2.59
27 28 9.981460 AAATTATGAAAAGAGGTTGGAGTAGAT 57.019 29.630 0.00 0.00 0.00 1.98
28 29 8.970859 ATTATGAAAAGAGGTTGGAGTAGATG 57.029 34.615 0.00 0.00 0.00 2.90
29 30 5.825593 TGAAAAGAGGTTGGAGTAGATGT 57.174 39.130 0.00 0.00 0.00 3.06
30 31 6.187727 TGAAAAGAGGTTGGAGTAGATGTT 57.812 37.500 0.00 0.00 0.00 2.71
31 32 7.311092 TGAAAAGAGGTTGGAGTAGATGTTA 57.689 36.000 0.00 0.00 0.00 2.41
32 33 7.386851 TGAAAAGAGGTTGGAGTAGATGTTAG 58.613 38.462 0.00 0.00 0.00 2.34
33 34 7.234782 TGAAAAGAGGTTGGAGTAGATGTTAGA 59.765 37.037 0.00 0.00 0.00 2.10
34 35 7.741554 AAAGAGGTTGGAGTAGATGTTAGAT 57.258 36.000 0.00 0.00 0.00 1.98
35 36 7.741554 AAGAGGTTGGAGTAGATGTTAGATT 57.258 36.000 0.00 0.00 0.00 2.40
36 37 7.354751 AGAGGTTGGAGTAGATGTTAGATTC 57.645 40.000 0.00 0.00 0.00 2.52
37 38 6.325286 AGAGGTTGGAGTAGATGTTAGATTCC 59.675 42.308 0.00 0.00 0.00 3.01
38 39 5.367060 AGGTTGGAGTAGATGTTAGATTCCC 59.633 44.000 0.00 0.00 0.00 3.97
39 40 5.367060 GGTTGGAGTAGATGTTAGATTCCCT 59.633 44.000 0.00 0.00 0.00 4.20
40 41 6.553852 GGTTGGAGTAGATGTTAGATTCCCTA 59.446 42.308 0.00 0.00 0.00 3.53
41 42 7.235812 GGTTGGAGTAGATGTTAGATTCCCTAT 59.764 40.741 0.00 0.00 0.00 2.57
42 43 9.310449 GTTGGAGTAGATGTTAGATTCCCTATA 57.690 37.037 0.00 0.00 0.00 1.31
43 44 9.892444 TTGGAGTAGATGTTAGATTCCCTATAA 57.108 33.333 0.00 0.00 0.00 0.98
44 45 9.892444 TGGAGTAGATGTTAGATTCCCTATAAA 57.108 33.333 0.00 0.00 0.00 1.40
91 92 6.997655 GGAAAAATTCCTATGGGATCCAATC 58.002 40.000 15.23 0.00 46.57 2.67
92 93 6.014242 GGAAAAATTCCTATGGGATCCAATCC 60.014 42.308 15.23 6.85 46.57 3.01
93 94 8.137240 GGAAAAATTCCTATGGGATCCAATCCT 61.137 40.741 15.23 0.00 46.41 3.24
108 109 8.797438 GGATCCAATCCTATAAATCAAAGAACC 58.203 37.037 6.95 0.00 46.19 3.62
109 110 9.354673 GATCCAATCCTATAAATCAAAGAACCA 57.645 33.333 0.00 0.00 0.00 3.67
110 111 8.519799 TCCAATCCTATAAATCAAAGAACCAC 57.480 34.615 0.00 0.00 0.00 4.16
111 112 8.112822 TCCAATCCTATAAATCAAAGAACCACA 58.887 33.333 0.00 0.00 0.00 4.17
112 113 8.190784 CCAATCCTATAAATCAAAGAACCACAC 58.809 37.037 0.00 0.00 0.00 3.82
113 114 8.739039 CAATCCTATAAATCAAAGAACCACACA 58.261 33.333 0.00 0.00 0.00 3.72
114 115 7.921786 TCCTATAAATCAAAGAACCACACAG 57.078 36.000 0.00 0.00 0.00 3.66
115 116 7.685481 TCCTATAAATCAAAGAACCACACAGA 58.315 34.615 0.00 0.00 0.00 3.41
116 117 8.160765 TCCTATAAATCAAAGAACCACACAGAA 58.839 33.333 0.00 0.00 0.00 3.02
117 118 8.792633 CCTATAAATCAAAGAACCACACAGAAA 58.207 33.333 0.00 0.00 0.00 2.52
157 158 7.678194 TTTTTGCGAGTGACAAATTTCTAAG 57.322 32.000 0.00 0.00 36.91 2.18
158 159 5.356882 TTGCGAGTGACAAATTTCTAAGG 57.643 39.130 0.00 0.00 0.00 2.69
159 160 4.637276 TGCGAGTGACAAATTTCTAAGGA 58.363 39.130 0.00 0.00 0.00 3.36
160 161 5.245531 TGCGAGTGACAAATTTCTAAGGAT 58.754 37.500 0.00 0.00 0.00 3.24
161 162 5.705441 TGCGAGTGACAAATTTCTAAGGATT 59.295 36.000 0.00 0.00 0.00 3.01
162 163 6.206634 TGCGAGTGACAAATTTCTAAGGATTT 59.793 34.615 0.00 0.00 0.00 2.17
163 164 6.743172 GCGAGTGACAAATTTCTAAGGATTTC 59.257 38.462 0.00 0.00 0.00 2.17
164 165 7.573096 GCGAGTGACAAATTTCTAAGGATTTCA 60.573 37.037 0.00 0.00 0.00 2.69
165 166 8.289618 CGAGTGACAAATTTCTAAGGATTTCAA 58.710 33.333 0.00 0.00 0.00 2.69
200 201 9.768215 AAATCCTATAGAATTCCTTTGAACCAA 57.232 29.630 0.00 0.00 32.13 3.67
201 202 9.768215 AATCCTATAGAATTCCTTTGAACCAAA 57.232 29.630 0.00 0.00 32.13 3.28
209 210 2.001076 CTTTGAACCAAAGGAGCCCT 57.999 50.000 10.65 0.00 44.75 5.19
210 211 3.154827 CTTTGAACCAAAGGAGCCCTA 57.845 47.619 10.65 0.00 44.75 3.53
211 212 3.496331 CTTTGAACCAAAGGAGCCCTAA 58.504 45.455 10.65 0.00 44.75 2.69
212 213 3.603965 TTGAACCAAAGGAGCCCTAAA 57.396 42.857 0.00 0.00 31.13 1.85
213 214 3.603965 TGAACCAAAGGAGCCCTAAAA 57.396 42.857 0.00 0.00 31.13 1.52
214 215 3.496331 TGAACCAAAGGAGCCCTAAAAG 58.504 45.455 0.00 0.00 31.13 2.27
215 216 3.139397 TGAACCAAAGGAGCCCTAAAAGA 59.861 43.478 0.00 0.00 31.13 2.52
216 217 3.441500 ACCAAAGGAGCCCTAAAAGAG 57.558 47.619 0.00 0.00 31.13 2.85
217 218 2.716969 ACCAAAGGAGCCCTAAAAGAGT 59.283 45.455 0.00 0.00 31.13 3.24
218 219 3.914435 ACCAAAGGAGCCCTAAAAGAGTA 59.086 43.478 0.00 0.00 31.13 2.59
261 262 4.162888 TCATGAAGCTTGGCTAGAGAATCA 59.837 41.667 2.10 0.00 38.25 2.57
290 291 6.948353 TCTTCTTCGATGACTGAACAAAAAG 58.052 36.000 0.00 0.00 0.00 2.27
291 292 6.761242 TCTTCTTCGATGACTGAACAAAAAGA 59.239 34.615 0.00 0.00 0.00 2.52
292 293 6.918892 TCTTCGATGACTGAACAAAAAGAA 57.081 33.333 0.00 0.00 0.00 2.52
293 294 7.496529 TCTTCGATGACTGAACAAAAAGAAT 57.503 32.000 0.00 0.00 0.00 2.40
294 295 7.355017 TCTTCGATGACTGAACAAAAAGAATG 58.645 34.615 0.00 0.00 0.00 2.67
295 296 6.000891 TCGATGACTGAACAAAAAGAATGG 57.999 37.500 0.00 0.00 0.00 3.16
296 297 5.530915 TCGATGACTGAACAAAAAGAATGGT 59.469 36.000 0.00 0.00 0.00 3.55
297 298 5.626543 CGATGACTGAACAAAAAGAATGGTG 59.373 40.000 0.00 0.00 0.00 4.17
298 299 4.681744 TGACTGAACAAAAAGAATGGTGC 58.318 39.130 0.00 0.00 0.00 5.01
299 300 4.159321 TGACTGAACAAAAAGAATGGTGCA 59.841 37.500 0.00 0.00 0.00 4.57
300 301 4.432712 ACTGAACAAAAAGAATGGTGCAC 58.567 39.130 8.80 8.80 0.00 4.57
301 302 3.791245 TGAACAAAAAGAATGGTGCACC 58.209 40.909 29.67 29.67 0.00 5.01
313 314 2.499214 GTGCACCACCTGGAAAACA 58.501 52.632 5.22 0.00 38.94 2.83
314 315 0.820871 GTGCACCACCTGGAAAACAA 59.179 50.000 5.22 0.00 38.94 2.83
315 316 1.205893 GTGCACCACCTGGAAAACAAA 59.794 47.619 5.22 0.00 38.94 2.83
316 317 1.480137 TGCACCACCTGGAAAACAAAG 59.520 47.619 0.00 0.00 38.94 2.77
317 318 1.202521 GCACCACCTGGAAAACAAAGG 60.203 52.381 0.00 0.00 38.94 3.11
318 319 2.107366 CACCACCTGGAAAACAAAGGT 58.893 47.619 0.00 0.00 45.32 3.50
321 322 1.119684 ACCTGGAAAACAAAGGTGCC 58.880 50.000 0.00 0.00 42.78 5.01
322 323 1.342975 ACCTGGAAAACAAAGGTGCCT 60.343 47.619 0.00 0.00 42.78 4.75
323 324 2.091555 ACCTGGAAAACAAAGGTGCCTA 60.092 45.455 0.00 0.00 42.78 3.93
324 325 2.558359 CCTGGAAAACAAAGGTGCCTAG 59.442 50.000 0.00 0.00 0.00 3.02
325 326 3.486383 CTGGAAAACAAAGGTGCCTAGA 58.514 45.455 0.00 0.00 0.00 2.43
326 327 3.888930 CTGGAAAACAAAGGTGCCTAGAA 59.111 43.478 0.00 0.00 0.00 2.10
327 328 4.282496 TGGAAAACAAAGGTGCCTAGAAA 58.718 39.130 0.00 0.00 0.00 2.52
328 329 4.712337 TGGAAAACAAAGGTGCCTAGAAAA 59.288 37.500 0.00 0.00 0.00 2.29
329 330 5.187967 TGGAAAACAAAGGTGCCTAGAAAAA 59.812 36.000 0.00 0.00 0.00 1.94
330 331 6.126911 TGGAAAACAAAGGTGCCTAGAAAAAT 60.127 34.615 0.00 0.00 0.00 1.82
331 332 6.423905 GGAAAACAAAGGTGCCTAGAAAAATC 59.576 38.462 0.00 0.00 0.00 2.17
332 333 4.766404 ACAAAGGTGCCTAGAAAAATCG 57.234 40.909 0.00 0.00 0.00 3.34
333 334 3.506067 ACAAAGGTGCCTAGAAAAATCGG 59.494 43.478 0.00 0.00 0.00 4.18
334 335 1.751437 AGGTGCCTAGAAAAATCGGC 58.249 50.000 0.00 0.00 42.78 5.54
335 336 0.377203 GGTGCCTAGAAAAATCGGCG 59.623 55.000 0.00 0.00 45.36 6.46
336 337 1.084289 GTGCCTAGAAAAATCGGCGT 58.916 50.000 6.85 0.00 45.36 5.68
337 338 1.062148 GTGCCTAGAAAAATCGGCGTC 59.938 52.381 6.85 0.00 45.36 5.19
338 339 1.066430 TGCCTAGAAAAATCGGCGTCT 60.066 47.619 6.85 4.30 45.36 4.18
339 340 2.007608 GCCTAGAAAAATCGGCGTCTT 58.992 47.619 6.85 0.00 32.22 3.01
340 341 2.030579 GCCTAGAAAAATCGGCGTCTTC 59.969 50.000 6.85 5.90 32.22 2.87
341 342 2.608090 CCTAGAAAAATCGGCGTCTTCC 59.392 50.000 6.85 0.00 0.00 3.46
342 343 2.474410 AGAAAAATCGGCGTCTTCCT 57.526 45.000 6.85 0.45 0.00 3.36
343 344 2.779506 AGAAAAATCGGCGTCTTCCTT 58.220 42.857 6.85 0.00 0.00 3.36
344 345 3.146847 AGAAAAATCGGCGTCTTCCTTT 58.853 40.909 6.85 0.96 0.00 3.11
345 346 2.989422 AAAATCGGCGTCTTCCTTTG 57.011 45.000 6.85 0.00 0.00 2.77
346 347 1.165270 AAATCGGCGTCTTCCTTTGG 58.835 50.000 6.85 0.00 0.00 3.28
347 348 0.323629 AATCGGCGTCTTCCTTTGGA 59.676 50.000 6.85 0.00 0.00 3.53
348 349 0.108138 ATCGGCGTCTTCCTTTGGAG 60.108 55.000 6.85 0.00 31.21 3.86
349 350 1.183030 TCGGCGTCTTCCTTTGGAGA 61.183 55.000 6.85 0.00 31.21 3.71
393 397 1.070445 GGAGTGAGGCATCATCGGG 59.930 63.158 3.55 0.00 37.87 5.14
444 449 2.019984 GGAATGCTTCAGACCATGACC 58.980 52.381 0.00 0.00 37.77 4.02
478 483 0.108186 TTGGACTGTGCTATGGCTCG 60.108 55.000 1.68 0.00 39.59 5.03
503 594 1.953686 GTTTGGGCAAGTGAAGTGCTA 59.046 47.619 0.00 0.00 41.88 3.49
504 595 1.604604 TTGGGCAAGTGAAGTGCTAC 58.395 50.000 0.00 0.00 41.88 3.58
505 596 0.250727 TGGGCAAGTGAAGTGCTACC 60.251 55.000 0.00 0.00 41.88 3.18
593 689 0.034896 AAGTCCGTACTTGGTGCCAG 59.965 55.000 0.00 0.00 44.40 4.85
596 692 1.375523 CCGTACTTGGTGCCAGGTC 60.376 63.158 9.30 1.96 37.44 3.85
604 700 2.639286 GTGCCAGGTCGCAACAAG 59.361 61.111 0.00 0.00 41.30 3.16
614 710 0.596600 TCGCAACAAGTCAGTCGTCC 60.597 55.000 0.00 0.00 0.00 4.79
648 744 3.113260 ACTCTATGGCGGCAATACTTC 57.887 47.619 18.31 0.00 0.00 3.01
678 774 0.620556 TCAGAAATCAGGTGGGAGCC 59.379 55.000 0.00 0.00 0.00 4.70
699 795 1.432514 CCACAGGTTCTCACGATGTG 58.567 55.000 0.00 0.00 39.39 3.21
720 816 3.812609 TGACATGTCAACACTTTATGCGT 59.187 39.130 26.02 0.00 36.53 5.24
769 904 3.292460 AGCGCTGATTAGTCTAGGACTT 58.708 45.455 10.39 0.00 40.28 3.01
807 942 2.410730 CACGTCGTATCCTTTGAACCAC 59.589 50.000 0.00 0.00 0.00 4.16
808 943 2.036217 ACGTCGTATCCTTTGAACCACA 59.964 45.455 0.00 0.00 0.00 4.17
810 945 3.660865 GTCGTATCCTTTGAACCACAGT 58.339 45.455 0.00 0.00 0.00 3.55
811 946 3.678548 GTCGTATCCTTTGAACCACAGTC 59.321 47.826 0.00 0.00 0.00 3.51
812 947 3.322541 TCGTATCCTTTGAACCACAGTCA 59.677 43.478 0.00 0.00 0.00 3.41
813 948 3.432252 CGTATCCTTTGAACCACAGTCAC 59.568 47.826 0.00 0.00 0.00 3.67
815 950 2.639065 TCCTTTGAACCACAGTCACAC 58.361 47.619 0.00 0.00 0.00 3.82
816 951 1.676006 CCTTTGAACCACAGTCACACC 59.324 52.381 0.00 0.00 0.00 4.16
817 952 1.330521 CTTTGAACCACAGTCACACCG 59.669 52.381 0.00 0.00 0.00 4.94
818 953 0.537653 TTGAACCACAGTCACACCGA 59.462 50.000 0.00 0.00 0.00 4.69
819 954 0.537653 TGAACCACAGTCACACCGAA 59.462 50.000 0.00 0.00 0.00 4.30
820 955 1.140052 TGAACCACAGTCACACCGAAT 59.860 47.619 0.00 0.00 0.00 3.34
821 956 2.365941 TGAACCACAGTCACACCGAATA 59.634 45.455 0.00 0.00 0.00 1.75
822 957 3.007506 TGAACCACAGTCACACCGAATAT 59.992 43.478 0.00 0.00 0.00 1.28
823 958 4.221041 TGAACCACAGTCACACCGAATATA 59.779 41.667 0.00 0.00 0.00 0.86
824 959 5.105106 TGAACCACAGTCACACCGAATATAT 60.105 40.000 0.00 0.00 0.00 0.86
919 1061 0.383860 GCTTTCACGTACGGCAACAC 60.384 55.000 21.06 0.86 0.00 3.32
920 1062 0.931702 CTTTCACGTACGGCAACACA 59.068 50.000 21.06 0.00 0.00 3.72
921 1063 0.651551 TTTCACGTACGGCAACACAC 59.348 50.000 21.06 0.00 0.00 3.82
922 1064 0.179105 TTCACGTACGGCAACACACT 60.179 50.000 21.06 0.00 0.00 3.55
923 1065 0.872451 TCACGTACGGCAACACACTG 60.872 55.000 21.06 5.30 0.00 3.66
948 1090 4.412199 TGGCTAGCCACATCTAAACCTAAT 59.588 41.667 32.88 0.00 41.89 1.73
949 1091 4.998033 GGCTAGCCACATCTAAACCTAATC 59.002 45.833 29.33 0.00 35.81 1.75
954 1096 5.882557 AGCCACATCTAAACCTAATCAAGTG 59.117 40.000 0.00 0.00 0.00 3.16
962 1104 2.983229 ACCTAATCAAGTGCTCAGCTG 58.017 47.619 7.63 7.63 0.00 4.24
970 1112 5.405935 TCAAGTGCTCAGCTGAAGTATAA 57.594 39.130 18.85 0.00 0.00 0.98
980 1122 3.444703 CTGAAGTATAACAGCCGAGCT 57.555 47.619 0.00 0.00 40.77 4.09
1167 1316 4.192000 GTGCAGATCACAGGACGG 57.808 61.111 0.00 0.00 44.98 4.79
1211 1360 7.462571 TGGTGAGTGCTCATATATACGTTAT 57.537 36.000 5.11 0.00 42.18 1.89
1213 1362 8.456471 TGGTGAGTGCTCATATATACGTTATAC 58.544 37.037 5.11 0.00 42.18 1.47
1214 1363 7.639072 GGTGAGTGCTCATATATACGTTATACG 59.361 40.741 5.11 0.00 43.97 3.06
1216 1365 9.106070 TGAGTGCTCATATATACGTTATACGAT 57.894 33.333 6.19 0.00 38.10 3.73
1217 1366 9.932699 GAGTGCTCATATATACGTTATACGATT 57.067 33.333 6.19 0.00 46.05 3.34
1218 1367 9.717892 AGTGCTCATATATACGTTATACGATTG 57.282 33.333 6.19 0.00 46.05 2.67
1219 1368 9.712359 GTGCTCATATATACGTTATACGATTGA 57.288 33.333 6.19 0.00 46.05 2.57
1226 1375 4.825546 ACGTTATACGATTGATCTCGGT 57.174 40.909 6.19 0.86 46.05 4.69
1227 1376 5.179045 ACGTTATACGATTGATCTCGGTT 57.821 39.130 6.19 0.00 46.05 4.44
1228 1377 5.585390 ACGTTATACGATTGATCTCGGTTT 58.415 37.500 6.19 0.00 46.05 3.27
1229 1378 6.038356 ACGTTATACGATTGATCTCGGTTTT 58.962 36.000 6.19 0.00 46.05 2.43
1230 1379 6.532657 ACGTTATACGATTGATCTCGGTTTTT 59.467 34.615 6.19 0.00 46.05 1.94
1255 1404 3.963428 ACGGAAGTGCTAAATCTCAGT 57.037 42.857 0.00 0.00 46.97 3.41
1256 1405 3.851098 ACGGAAGTGCTAAATCTCAGTC 58.149 45.455 0.00 0.00 46.97 3.51
1257 1406 2.854777 CGGAAGTGCTAAATCTCAGTCG 59.145 50.000 0.00 0.00 0.00 4.18
1258 1407 3.427638 CGGAAGTGCTAAATCTCAGTCGA 60.428 47.826 0.00 0.00 0.00 4.20
1259 1408 4.495422 GGAAGTGCTAAATCTCAGTCGAA 58.505 43.478 0.00 0.00 0.00 3.71
1260 1409 4.327627 GGAAGTGCTAAATCTCAGTCGAAC 59.672 45.833 0.00 0.00 0.00 3.95
1261 1410 4.792521 AGTGCTAAATCTCAGTCGAACT 57.207 40.909 0.00 0.00 0.00 3.01
1262 1411 5.899120 AGTGCTAAATCTCAGTCGAACTA 57.101 39.130 0.00 0.00 0.00 2.24
1263 1412 6.268825 AGTGCTAAATCTCAGTCGAACTAA 57.731 37.500 0.00 0.00 0.00 2.24
1264 1413 6.326375 AGTGCTAAATCTCAGTCGAACTAAG 58.674 40.000 0.00 0.00 0.00 2.18
1265 1414 6.151312 AGTGCTAAATCTCAGTCGAACTAAGA 59.849 38.462 0.00 0.00 24.69 2.10
1266 1415 6.251801 GTGCTAAATCTCAGTCGAACTAAGAC 59.748 42.308 0.00 0.00 38.81 3.01
1268 1417 7.030768 GCTAAATCTCAGTCGAACTAAGACTT 58.969 38.462 0.00 0.00 45.74 3.01
1269 1418 7.219344 GCTAAATCTCAGTCGAACTAAGACTTC 59.781 40.741 0.00 0.00 45.74 3.01
1270 1419 4.665281 TCTCAGTCGAACTAAGACTTCG 57.335 45.455 0.00 0.00 45.74 3.79
1271 1420 4.313282 TCTCAGTCGAACTAAGACTTCGA 58.687 43.478 0.00 0.00 45.74 3.71
1288 1437 6.109320 ACTTCGAAGTCTTAGTCGATACTG 57.891 41.667 24.93 0.00 45.03 2.74
1289 1438 5.642919 ACTTCGAAGTCTTAGTCGATACTGT 59.357 40.000 24.93 0.00 45.03 3.55
1290 1439 6.815641 ACTTCGAAGTCTTAGTCGATACTGTA 59.184 38.462 24.93 0.00 45.03 2.74
1291 1440 7.495279 ACTTCGAAGTCTTAGTCGATACTGTAT 59.505 37.037 24.93 0.00 45.03 2.29
1292 1441 7.783090 TCGAAGTCTTAGTCGATACTGTATT 57.217 36.000 1.22 0.00 41.13 1.89
1293 1442 7.849496 TCGAAGTCTTAGTCGATACTGTATTC 58.151 38.462 1.22 0.00 41.13 1.75
1294 1443 7.493645 TCGAAGTCTTAGTCGATACTGTATTCA 59.506 37.037 1.22 0.00 41.13 2.57
1295 1444 8.283992 CGAAGTCTTAGTCGATACTGTATTCAT 58.716 37.037 1.22 0.00 39.64 2.57
1296 1445 9.953697 GAAGTCTTAGTCGATACTGTATTCATT 57.046 33.333 1.22 0.00 36.36 2.57
1317 1466 9.667107 TTCATTAGATTTTACTTGAAGATCCGT 57.333 29.630 0.00 0.00 30.49 4.69
1318 1467 9.098355 TCATTAGATTTTACTTGAAGATCCGTG 57.902 33.333 0.00 0.00 30.49 4.94
1319 1468 8.883731 CATTAGATTTTACTTGAAGATCCGTGT 58.116 33.333 0.00 0.00 30.49 4.49
1321 1470 9.932207 TTAGATTTTACTTGAAGATCCGTGTAA 57.068 29.630 0.00 0.00 30.49 2.41
1322 1471 8.842358 AGATTTTACTTGAAGATCCGTGTAAA 57.158 30.769 0.00 0.00 30.49 2.01
1323 1472 9.280174 AGATTTTACTTGAAGATCCGTGTAAAA 57.720 29.630 0.00 15.46 41.13 1.52
1328 1477 9.887406 TTACTTGAAGATCCGTGTAAAATTTTC 57.113 29.630 6.72 0.37 0.00 2.29
1329 1478 8.166422 ACTTGAAGATCCGTGTAAAATTTTCT 57.834 30.769 6.72 0.00 0.00 2.52
1330 1479 8.630037 ACTTGAAGATCCGTGTAAAATTTTCTT 58.370 29.630 6.72 1.97 0.00 2.52
1331 1480 9.463443 CTTGAAGATCCGTGTAAAATTTTCTTT 57.537 29.630 6.72 0.00 0.00 2.52
1332 1481 8.795786 TGAAGATCCGTGTAAAATTTTCTTTG 57.204 30.769 6.72 0.00 0.00 2.77
1333 1482 8.625651 TGAAGATCCGTGTAAAATTTTCTTTGA 58.374 29.630 6.72 0.10 0.00 2.69
1334 1483 9.458374 GAAGATCCGTGTAAAATTTTCTTTGAA 57.542 29.630 6.72 0.00 0.00 2.69
1335 1484 9.463443 AAGATCCGTGTAAAATTTTCTTTGAAG 57.537 29.630 6.72 0.00 0.00 3.02
1336 1485 8.630037 AGATCCGTGTAAAATTTTCTTTGAAGT 58.370 29.630 6.72 0.00 0.00 3.01
1337 1486 9.244799 GATCCGTGTAAAATTTTCTTTGAAGTT 57.755 29.630 6.72 0.00 0.00 2.66
1338 1487 8.623310 TCCGTGTAAAATTTTCTTTGAAGTTC 57.377 30.769 6.72 0.00 0.00 3.01
1339 1488 8.463607 TCCGTGTAAAATTTTCTTTGAAGTTCT 58.536 29.630 6.72 0.00 0.00 3.01
1340 1489 9.083080 CCGTGTAAAATTTTCTTTGAAGTTCTT 57.917 29.630 6.72 0.00 0.00 2.52
1384 1533 9.831737 AAATTCTATTCATTGACAGAAACTTCG 57.168 29.630 11.82 0.00 31.25 3.79
1385 1534 7.962964 TTCTATTCATTGACAGAAACTTCGT 57.037 32.000 7.21 0.00 0.00 3.85
1386 1535 7.962964 TCTATTCATTGACAGAAACTTCGTT 57.037 32.000 0.00 0.00 0.00 3.85
1387 1536 9.483916 TTCTATTCATTGACAGAAACTTCGTTA 57.516 29.630 7.21 0.00 0.00 3.18
1388 1537 9.483916 TCTATTCATTGACAGAAACTTCGTTAA 57.516 29.630 0.00 0.00 0.00 2.01
1389 1538 9.746711 CTATTCATTGACAGAAACTTCGTTAAG 57.253 33.333 0.00 0.00 38.77 1.85
1391 1540 7.173863 TCATTGACAGAAACTTCGTTAAGTC 57.826 36.000 0.00 0.00 45.37 3.01
1392 1541 6.984474 TCATTGACAGAAACTTCGTTAAGTCT 59.016 34.615 0.00 0.00 45.37 3.24
1393 1542 6.823678 TTGACAGAAACTTCGTTAAGTCTC 57.176 37.500 0.00 0.00 45.37 3.36
1394 1543 5.898174 TGACAGAAACTTCGTTAAGTCTCA 58.102 37.500 0.00 0.00 45.37 3.27
1395 1544 5.977725 TGACAGAAACTTCGTTAAGTCTCAG 59.022 40.000 0.00 0.00 45.37 3.35
1396 1545 5.903810 ACAGAAACTTCGTTAAGTCTCAGT 58.096 37.500 0.00 0.00 45.37 3.41
1397 1546 5.978322 ACAGAAACTTCGTTAAGTCTCAGTC 59.022 40.000 0.00 0.00 45.37 3.51
1398 1547 5.977725 CAGAAACTTCGTTAAGTCTCAGTCA 59.022 40.000 0.00 0.00 45.37 3.41
1399 1548 6.475727 CAGAAACTTCGTTAAGTCTCAGTCAA 59.524 38.462 0.00 0.00 45.37 3.18
1400 1549 7.010183 CAGAAACTTCGTTAAGTCTCAGTCAAA 59.990 37.037 0.00 0.00 45.37 2.69
1401 1550 7.711339 AGAAACTTCGTTAAGTCTCAGTCAAAT 59.289 33.333 0.00 0.00 45.37 2.32
1402 1551 7.787725 AACTTCGTTAAGTCTCAGTCAAATT 57.212 32.000 0.00 0.00 45.37 1.82
1403 1552 8.882415 AACTTCGTTAAGTCTCAGTCAAATTA 57.118 30.769 0.00 0.00 45.37 1.40
1404 1553 8.522178 ACTTCGTTAAGTCTCAGTCAAATTAG 57.478 34.615 0.00 0.00 42.42 1.73
1405 1554 8.358148 ACTTCGTTAAGTCTCAGTCAAATTAGA 58.642 33.333 0.00 0.00 42.42 2.10
1406 1555 9.360093 CTTCGTTAAGTCTCAGTCAAATTAGAT 57.640 33.333 0.00 0.00 0.00 1.98
1407 1556 8.912787 TCGTTAAGTCTCAGTCAAATTAGATC 57.087 34.615 0.00 0.00 0.00 2.75
1408 1557 8.740906 TCGTTAAGTCTCAGTCAAATTAGATCT 58.259 33.333 0.00 0.00 0.00 2.75
1412 1561 7.049799 AGTCTCAGTCAAATTAGATCTAGCC 57.950 40.000 2.02 0.00 0.00 3.93
1413 1562 6.609212 AGTCTCAGTCAAATTAGATCTAGCCA 59.391 38.462 2.02 0.00 0.00 4.75
1414 1563 6.699642 GTCTCAGTCAAATTAGATCTAGCCAC 59.300 42.308 2.02 0.00 0.00 5.01
1415 1564 6.381133 TCTCAGTCAAATTAGATCTAGCCACA 59.619 38.462 2.02 0.00 0.00 4.17
1416 1565 7.070447 TCTCAGTCAAATTAGATCTAGCCACAT 59.930 37.037 2.02 0.00 0.00 3.21
1417 1566 7.568349 TCAGTCAAATTAGATCTAGCCACATT 58.432 34.615 2.02 0.00 0.00 2.71
1418 1567 7.712639 TCAGTCAAATTAGATCTAGCCACATTC 59.287 37.037 2.02 0.00 0.00 2.67
1419 1568 7.714377 CAGTCAAATTAGATCTAGCCACATTCT 59.286 37.037 2.02 0.00 0.00 2.40
1420 1569 8.270744 AGTCAAATTAGATCTAGCCACATTCTT 58.729 33.333 2.02 0.00 0.00 2.52
1421 1570 8.897752 GTCAAATTAGATCTAGCCACATTCTTT 58.102 33.333 2.02 0.00 0.00 2.52
1422 1571 9.466497 TCAAATTAGATCTAGCCACATTCTTTT 57.534 29.630 2.02 0.00 0.00 2.27
1425 1574 9.466497 AATTAGATCTAGCCACATTCTTTTTCA 57.534 29.630 2.02 0.00 0.00 2.69
1426 1575 8.862325 TTAGATCTAGCCACATTCTTTTTCAA 57.138 30.769 2.02 0.00 0.00 2.69
1427 1576 7.765695 AGATCTAGCCACATTCTTTTTCAAA 57.234 32.000 0.00 0.00 0.00 2.69
1428 1577 8.181904 AGATCTAGCCACATTCTTTTTCAAAA 57.818 30.769 0.00 0.00 0.00 2.44
1429 1578 8.810041 AGATCTAGCCACATTCTTTTTCAAAAT 58.190 29.630 0.00 0.00 0.00 1.82
1430 1579 9.428097 GATCTAGCCACATTCTTTTTCAAAATT 57.572 29.630 0.00 0.00 0.00 1.82
1434 1583 8.243289 AGCCACATTCTTTTTCAAAATTATCG 57.757 30.769 0.00 0.00 0.00 2.92
1436 1585 9.134734 GCCACATTCTTTTTCAAAATTATCGTA 57.865 29.630 0.00 0.00 0.00 3.43
1469 1622 0.659427 ATGCATGCATGTACGCACTC 59.341 50.000 31.74 8.94 46.56 3.51
1470 1623 1.011904 GCATGCATGTACGCACTCG 60.012 57.895 26.79 0.00 46.56 4.18
1472 1625 2.173669 ATGCATGTACGCACTCGGC 61.174 57.895 0.00 0.00 46.56 5.54
1473 1626 3.564027 GCATGTACGCACTCGGCC 61.564 66.667 0.00 0.00 40.31 6.13
1477 1630 0.102481 ATGTACGCACTCGGCCTTAG 59.898 55.000 0.00 0.00 40.31 2.18
1478 1631 1.246056 TGTACGCACTCGGCCTTAGT 61.246 55.000 0.00 0.61 40.31 2.24
1479 1632 0.108945 GTACGCACTCGGCCTTAGTT 60.109 55.000 0.00 0.00 40.31 2.24
1481 1634 0.604578 ACGCACTCGGCCTTAGTTTA 59.395 50.000 0.00 0.00 40.31 2.01
1482 1635 1.001181 ACGCACTCGGCCTTAGTTTAA 59.999 47.619 0.00 0.00 40.31 1.52
1483 1636 1.659098 CGCACTCGGCCTTAGTTTAAG 59.341 52.381 0.00 0.00 40.31 1.85
1484 1637 6.693626 TACGCACTCGGCCTTAGTTTAAGG 62.694 50.000 0.00 9.94 46.97 2.69
1499 1652 5.757988 AGTTTAAGGAAGGTGGTACAAACA 58.242 37.500 0.00 0.00 44.16 2.83
1500 1653 6.370453 AGTTTAAGGAAGGTGGTACAAACAT 58.630 36.000 0.00 0.00 44.16 2.71
1501 1654 6.837048 AGTTTAAGGAAGGTGGTACAAACATT 59.163 34.615 0.00 0.00 44.16 2.71
1502 1655 7.343574 AGTTTAAGGAAGGTGGTACAAACATTT 59.656 33.333 0.00 0.00 44.16 2.32
1504 1657 6.644248 AAGGAAGGTGGTACAAACATTTAC 57.356 37.500 0.00 0.00 44.16 2.01
1505 1658 5.697067 AGGAAGGTGGTACAAACATTTACA 58.303 37.500 0.00 0.00 44.16 2.41
1506 1659 6.311735 AGGAAGGTGGTACAAACATTTACAT 58.688 36.000 0.00 0.00 44.16 2.29
1507 1660 6.208599 AGGAAGGTGGTACAAACATTTACATG 59.791 38.462 0.00 0.00 44.16 3.21
1508 1661 6.015772 GGAAGGTGGTACAAACATTTACATGT 60.016 38.462 2.69 2.69 46.34 3.21
1509 1662 6.325919 AGGTGGTACAAACATTTACATGTG 57.674 37.500 9.11 0.00 43.34 3.21
1510 1663 5.830991 AGGTGGTACAAACATTTACATGTGT 59.169 36.000 9.11 0.00 43.34 3.72
1511 1664 6.016610 AGGTGGTACAAACATTTACATGTGTC 60.017 38.462 9.11 0.00 43.34 3.67
1512 1665 6.016610 GGTGGTACAAACATTTACATGTGTCT 60.017 38.462 9.11 0.00 43.34 3.41
1513 1666 7.173562 GGTGGTACAAACATTTACATGTGTCTA 59.826 37.037 9.11 0.00 43.34 2.59
1514 1667 8.726988 GTGGTACAAACATTTACATGTGTCTAT 58.273 33.333 9.11 0.00 43.34 1.98
1515 1668 8.941977 TGGTACAAACATTTACATGTGTCTATC 58.058 33.333 9.11 0.00 43.34 2.08
1516 1669 9.162764 GGTACAAACATTTACATGTGTCTATCT 57.837 33.333 9.11 0.00 43.34 1.98
1527 1680 7.643528 ACATGTGTCTATCTATGTTTATGCG 57.356 36.000 0.00 0.00 30.05 4.73
1528 1681 6.146184 ACATGTGTCTATCTATGTTTATGCGC 59.854 38.462 0.00 0.00 30.05 6.09
1531 1684 3.673338 GTCTATCTATGTTTATGCGCGCA 59.327 43.478 38.27 38.27 0.00 6.09
1535 1688 4.645667 TCTATGTTTATGCGCGCATAAG 57.354 40.909 45.45 37.89 45.82 1.73
1551 1704 4.232221 GCATAAGTAATGTGATGGCATGC 58.768 43.478 9.90 9.90 37.93 4.06
1563 1716 5.184671 TGTGATGGCATGCTTATTTGTTACA 59.815 36.000 18.92 2.84 0.00 2.41
1583 1736 1.867363 AGGTGATGGTAGACCCTGAC 58.133 55.000 0.00 0.00 32.03 3.51
1592 1745 2.092699 GGTAGACCCTGACGTACCTAGT 60.093 54.545 0.00 0.00 33.43 2.57
1601 1754 2.829720 TGACGTACCTAGTCCAAGCAAT 59.170 45.455 0.00 0.00 37.80 3.56
1665 1822 7.977904 TCATGCACTACAAAAATATCACTCAG 58.022 34.615 0.00 0.00 0.00 3.35
1707 1917 2.361438 ACTCATTAGTACCTACGCTGGC 59.639 50.000 0.00 0.00 32.84 4.85
1793 2028 0.877071 TACCAGAACGAGGTGACGTC 59.123 55.000 9.11 9.11 45.83 4.34
1868 2193 1.151450 CCCAGCCGGCATTAATCCT 59.849 57.895 31.54 0.76 0.00 3.24
1936 2271 2.338015 GGTGCCGTACGAGAGACCA 61.338 63.158 18.76 0.90 0.00 4.02
2139 2477 1.003718 GGTACCGGTGAAGCAAGCT 60.004 57.895 19.93 0.00 0.00 3.74
2140 2478 1.298859 GGTACCGGTGAAGCAAGCTG 61.299 60.000 19.93 0.00 0.00 4.24
2142 2480 1.764571 TACCGGTGAAGCAAGCTGGT 61.765 55.000 19.93 6.32 0.00 4.00
2175 2513 1.299089 CACGCACGATCGCTCCATA 60.299 57.895 16.60 0.00 0.00 2.74
2178 2516 1.540607 CGCACGATCGCTCCATACAC 61.541 60.000 16.60 0.00 0.00 2.90
2180 2518 1.921243 CACGATCGCTCCATACACAA 58.079 50.000 16.60 0.00 0.00 3.33
2181 2519 2.473816 CACGATCGCTCCATACACAAT 58.526 47.619 16.60 0.00 0.00 2.71
2182 2520 3.638484 CACGATCGCTCCATACACAATA 58.362 45.455 16.60 0.00 0.00 1.90
2183 2521 4.237724 CACGATCGCTCCATACACAATAT 58.762 43.478 16.60 0.00 0.00 1.28
2184 2522 4.090498 CACGATCGCTCCATACACAATATG 59.910 45.833 16.60 0.00 0.00 1.78
2185 2523 4.237724 CGATCGCTCCATACACAATATGT 58.762 43.478 0.26 0.00 46.06 2.29
2218 2584 4.209288 GTGTAGCTGCTTGTAATACATCCG 59.791 45.833 7.79 0.00 0.00 4.18
2224 2590 4.435425 TGCTTGTAATACATCCGGTGTAC 58.565 43.478 15.97 9.28 45.59 2.90
2302 2668 1.617850 TGGTGCATGGCCTAAACAAAG 59.382 47.619 3.32 0.00 0.00 2.77
2328 2694 7.591426 GCATTAAATAATTTTAGGGAGCGTCTG 59.409 37.037 0.00 0.00 0.00 3.51
2335 2701 2.502142 TAGGGAGCGTCTGTAACTCA 57.498 50.000 0.00 0.00 31.88 3.41
2346 2712 4.395231 CGTCTGTAACTCATCTACACCTGA 59.605 45.833 0.00 0.00 0.00 3.86
2370 2736 6.860080 ACATCATTGTGATTTGAACTGGATC 58.140 36.000 0.00 0.00 34.28 3.36
2375 2741 6.957920 TTGTGATTTGAACTGGATCTTTCA 57.042 33.333 0.00 0.00 0.00 2.69
2377 2743 5.241506 TGTGATTTGAACTGGATCTTTCACC 59.758 40.000 4.94 0.00 31.42 4.02
2378 2744 4.766891 TGATTTGAACTGGATCTTTCACCC 59.233 41.667 4.94 0.00 31.42 4.61
2379 2745 4.453480 TTTGAACTGGATCTTTCACCCT 57.547 40.909 4.94 0.00 31.42 4.34
2382 2748 2.770164 ACTGGATCTTTCACCCTTCG 57.230 50.000 0.00 0.00 0.00 3.79
2385 2751 1.974957 TGGATCTTTCACCCTTCGTCA 59.025 47.619 0.00 0.00 0.00 4.35
2393 2759 1.835712 ACCCTTCGTCACCCTCGTT 60.836 57.895 0.00 0.00 0.00 3.85
2395 2761 0.949105 CCCTTCGTCACCCTCGTTTG 60.949 60.000 0.00 0.00 0.00 2.93
2402 2768 1.155424 TCACCCTCGTTTGCGTTGAC 61.155 55.000 0.00 0.00 39.49 3.18
2509 2875 1.725641 TGGTTCTCGCATTGTGCTAG 58.274 50.000 0.10 0.00 42.25 3.42
2552 2918 5.858049 GCGAGATCACAATTTGTCAAATGAA 59.142 36.000 11.54 0.00 0.00 2.57
2566 2932 8.800231 TTGTCAAATGAATACACAATCAACTG 57.200 30.769 0.00 0.00 0.00 3.16
2748 3134 9.624697 GCAACTGATTTGAATATGTGAAAGTAA 57.375 29.630 0.00 0.00 37.39 2.24
3021 3413 1.153449 GTATGCTGCCGCCTACACA 60.153 57.895 9.98 0.00 37.26 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.449719 TCTACTCCAACCTCTTTTCATAATTTC 57.550 33.333 0.00 0.00 0.00 2.17
1 2 9.981460 ATCTACTCCAACCTCTTTTCATAATTT 57.019 29.630 0.00 0.00 0.00 1.82
4 5 7.918076 ACATCTACTCCAACCTCTTTTCATAA 58.082 34.615 0.00 0.00 0.00 1.90
6 7 6.380079 ACATCTACTCCAACCTCTTTTCAT 57.620 37.500 0.00 0.00 0.00 2.57
7 8 5.825593 ACATCTACTCCAACCTCTTTTCA 57.174 39.130 0.00 0.00 0.00 2.69
8 9 7.612677 TCTAACATCTACTCCAACCTCTTTTC 58.387 38.462 0.00 0.00 0.00 2.29
9 10 7.554959 TCTAACATCTACTCCAACCTCTTTT 57.445 36.000 0.00 0.00 0.00 2.27
11 12 7.147637 GGAATCTAACATCTACTCCAACCTCTT 60.148 40.741 0.00 0.00 0.00 2.85
12 13 6.325286 GGAATCTAACATCTACTCCAACCTCT 59.675 42.308 0.00 0.00 0.00 3.69
13 14 6.463190 GGGAATCTAACATCTACTCCAACCTC 60.463 46.154 0.00 0.00 0.00 3.85
14 15 5.367060 GGGAATCTAACATCTACTCCAACCT 59.633 44.000 0.00 0.00 0.00 3.50
15 16 5.367060 AGGGAATCTAACATCTACTCCAACC 59.633 44.000 0.00 0.00 0.00 3.77
16 17 6.487299 AGGGAATCTAACATCTACTCCAAC 57.513 41.667 0.00 0.00 0.00 3.77
17 18 9.892444 TTATAGGGAATCTAACATCTACTCCAA 57.108 33.333 0.00 0.00 0.00 3.53
18 19 9.892444 TTTATAGGGAATCTAACATCTACTCCA 57.108 33.333 0.00 0.00 0.00 3.86
83 84 9.354673 TGGTTCTTTGATTTATAGGATTGGATC 57.645 33.333 0.00 0.00 0.00 3.36
84 85 9.136323 GTGGTTCTTTGATTTATAGGATTGGAT 57.864 33.333 0.00 0.00 0.00 3.41
85 86 8.112822 TGTGGTTCTTTGATTTATAGGATTGGA 58.887 33.333 0.00 0.00 0.00 3.53
86 87 8.190784 GTGTGGTTCTTTGATTTATAGGATTGG 58.809 37.037 0.00 0.00 0.00 3.16
87 88 8.739039 TGTGTGGTTCTTTGATTTATAGGATTG 58.261 33.333 0.00 0.00 0.00 2.67
88 89 8.877864 TGTGTGGTTCTTTGATTTATAGGATT 57.122 30.769 0.00 0.00 0.00 3.01
89 90 8.328758 TCTGTGTGGTTCTTTGATTTATAGGAT 58.671 33.333 0.00 0.00 0.00 3.24
90 91 7.685481 TCTGTGTGGTTCTTTGATTTATAGGA 58.315 34.615 0.00 0.00 0.00 2.94
91 92 7.921786 TCTGTGTGGTTCTTTGATTTATAGG 57.078 36.000 0.00 0.00 0.00 2.57
133 134 6.695278 CCTTAGAAATTTGTCACTCGCAAAAA 59.305 34.615 0.00 0.00 38.98 1.94
134 135 6.038825 TCCTTAGAAATTTGTCACTCGCAAAA 59.961 34.615 0.00 0.00 38.98 2.44
135 136 5.529430 TCCTTAGAAATTTGTCACTCGCAAA 59.471 36.000 0.00 0.00 39.69 3.68
136 137 5.060506 TCCTTAGAAATTTGTCACTCGCAA 58.939 37.500 0.00 0.00 0.00 4.85
137 138 4.637276 TCCTTAGAAATTTGTCACTCGCA 58.363 39.130 0.00 0.00 0.00 5.10
138 139 5.803020 ATCCTTAGAAATTTGTCACTCGC 57.197 39.130 0.00 0.00 0.00 5.03
139 140 7.806690 TGAAATCCTTAGAAATTTGTCACTCG 58.193 34.615 0.00 0.00 0.00 4.18
174 175 9.768215 TTGGTTCAAAGGAATTCTATAGGATTT 57.232 29.630 7.72 0.00 35.05 2.17
175 176 9.768215 TTTGGTTCAAAGGAATTCTATAGGATT 57.232 29.630 5.92 5.92 35.05 3.01
176 177 9.413734 CTTTGGTTCAAAGGAATTCTATAGGAT 57.586 33.333 5.23 0.00 44.75 3.24
177 178 8.807948 CTTTGGTTCAAAGGAATTCTATAGGA 57.192 34.615 5.23 0.00 44.75 2.94
191 192 3.603965 TTAGGGCTCCTTTGGTTCAAA 57.396 42.857 0.00 0.00 34.61 2.69
192 193 3.603965 TTTAGGGCTCCTTTGGTTCAA 57.396 42.857 0.00 0.00 34.61 2.69
193 194 3.139397 TCTTTTAGGGCTCCTTTGGTTCA 59.861 43.478 0.00 0.00 34.61 3.18
194 195 3.759086 CTCTTTTAGGGCTCCTTTGGTTC 59.241 47.826 0.00 0.00 34.61 3.62
195 196 3.140332 ACTCTTTTAGGGCTCCTTTGGTT 59.860 43.478 0.00 0.00 34.61 3.67
196 197 2.716969 ACTCTTTTAGGGCTCCTTTGGT 59.283 45.455 0.00 0.00 34.61 3.67
197 198 3.441500 ACTCTTTTAGGGCTCCTTTGG 57.558 47.619 0.00 0.00 34.61 3.28
198 199 4.884164 CCATACTCTTTTAGGGCTCCTTTG 59.116 45.833 0.00 0.00 34.61 2.77
199 200 4.540502 ACCATACTCTTTTAGGGCTCCTTT 59.459 41.667 0.00 0.00 34.61 3.11
200 201 4.080299 CACCATACTCTTTTAGGGCTCCTT 60.080 45.833 0.00 0.00 34.61 3.36
201 202 3.456277 CACCATACTCTTTTAGGGCTCCT 59.544 47.826 0.00 0.00 37.71 3.69
202 203 3.454812 TCACCATACTCTTTTAGGGCTCC 59.545 47.826 0.00 0.00 0.00 4.70
203 204 4.081087 TGTCACCATACTCTTTTAGGGCTC 60.081 45.833 0.00 0.00 0.00 4.70
204 205 3.844211 TGTCACCATACTCTTTTAGGGCT 59.156 43.478 0.00 0.00 0.00 5.19
205 206 4.216411 TGTCACCATACTCTTTTAGGGC 57.784 45.455 0.00 0.00 0.00 5.19
206 207 5.805728 AGTTGTCACCATACTCTTTTAGGG 58.194 41.667 0.00 0.00 0.00 3.53
207 208 8.311836 TCTTAGTTGTCACCATACTCTTTTAGG 58.688 37.037 0.00 0.00 0.00 2.69
208 209 9.706691 TTCTTAGTTGTCACCATACTCTTTTAG 57.293 33.333 0.00 0.00 0.00 1.85
210 211 8.974060 TTTCTTAGTTGTCACCATACTCTTTT 57.026 30.769 0.00 0.00 0.00 2.27
211 212 8.837389 GTTTTCTTAGTTGTCACCATACTCTTT 58.163 33.333 0.00 0.00 0.00 2.52
212 213 8.211629 AGTTTTCTTAGTTGTCACCATACTCTT 58.788 33.333 0.00 0.00 0.00 2.85
213 214 7.736893 AGTTTTCTTAGTTGTCACCATACTCT 58.263 34.615 0.00 0.00 0.00 3.24
214 215 7.656137 TGAGTTTTCTTAGTTGTCACCATACTC 59.344 37.037 0.00 0.00 0.00 2.59
215 216 7.506114 TGAGTTTTCTTAGTTGTCACCATACT 58.494 34.615 0.00 0.00 0.00 2.12
216 217 7.724305 TGAGTTTTCTTAGTTGTCACCATAC 57.276 36.000 0.00 0.00 0.00 2.39
217 218 8.154203 TCATGAGTTTTCTTAGTTGTCACCATA 58.846 33.333 0.00 0.00 0.00 2.74
218 219 6.998074 TCATGAGTTTTCTTAGTTGTCACCAT 59.002 34.615 0.00 0.00 0.00 3.55
237 238 3.815856 TCTCTAGCCAAGCTTCATGAG 57.184 47.619 0.00 0.71 40.44 2.90
295 296 0.820871 TTGTTTTCCAGGTGGTGCAC 59.179 50.000 8.80 8.80 36.34 4.57
296 297 1.480137 CTTTGTTTTCCAGGTGGTGCA 59.520 47.619 0.00 0.00 36.34 4.57
297 298 1.202521 CCTTTGTTTTCCAGGTGGTGC 60.203 52.381 0.00 0.00 36.34 5.01
298 299 2.107366 ACCTTTGTTTTCCAGGTGGTG 58.893 47.619 0.00 0.00 39.60 4.17
299 300 2.543037 ACCTTTGTTTTCCAGGTGGT 57.457 45.000 0.00 0.00 39.60 4.16
302 303 1.119684 GGCACCTTTGTTTTCCAGGT 58.880 50.000 0.00 0.00 41.97 4.00
303 304 1.413118 AGGCACCTTTGTTTTCCAGG 58.587 50.000 0.00 0.00 0.00 4.45
304 305 3.486383 TCTAGGCACCTTTGTTTTCCAG 58.514 45.455 0.00 0.00 0.00 3.86
305 306 3.586470 TCTAGGCACCTTTGTTTTCCA 57.414 42.857 0.00 0.00 0.00 3.53
306 307 4.929819 TTTCTAGGCACCTTTGTTTTCC 57.070 40.909 0.00 0.00 0.00 3.13
307 308 6.143919 CGATTTTTCTAGGCACCTTTGTTTTC 59.856 38.462 0.00 0.00 0.00 2.29
308 309 5.983118 CGATTTTTCTAGGCACCTTTGTTTT 59.017 36.000 0.00 0.00 0.00 2.43
309 310 5.508994 CCGATTTTTCTAGGCACCTTTGTTT 60.509 40.000 0.00 0.00 0.00 2.83
310 311 4.022329 CCGATTTTTCTAGGCACCTTTGTT 60.022 41.667 0.00 0.00 0.00 2.83
311 312 3.506067 CCGATTTTTCTAGGCACCTTTGT 59.494 43.478 0.00 0.00 0.00 2.83
312 313 4.096732 CCGATTTTTCTAGGCACCTTTG 57.903 45.455 0.00 0.00 0.00 2.77
319 320 1.653151 AGACGCCGATTTTTCTAGGC 58.347 50.000 0.00 0.00 45.67 3.93
320 321 2.608090 GGAAGACGCCGATTTTTCTAGG 59.392 50.000 0.00 0.00 0.00 3.02
321 322 3.522553 AGGAAGACGCCGATTTTTCTAG 58.477 45.455 0.00 0.00 0.00 2.43
322 323 3.604875 AGGAAGACGCCGATTTTTCTA 57.395 42.857 0.00 0.00 0.00 2.10
323 324 2.474410 AGGAAGACGCCGATTTTTCT 57.526 45.000 0.00 0.00 0.00 2.52
324 325 3.234386 CAAAGGAAGACGCCGATTTTTC 58.766 45.455 0.00 0.00 0.00 2.29
325 326 2.030274 CCAAAGGAAGACGCCGATTTTT 60.030 45.455 0.00 0.00 0.00 1.94
326 327 1.539827 CCAAAGGAAGACGCCGATTTT 59.460 47.619 0.00 0.00 0.00 1.82
327 328 1.165270 CCAAAGGAAGACGCCGATTT 58.835 50.000 0.00 0.00 0.00 2.17
328 329 0.323629 TCCAAAGGAAGACGCCGATT 59.676 50.000 0.00 0.00 0.00 3.34
329 330 0.108138 CTCCAAAGGAAGACGCCGAT 60.108 55.000 0.00 0.00 0.00 4.18
330 331 1.183030 TCTCCAAAGGAAGACGCCGA 61.183 55.000 0.00 0.00 0.00 5.54
331 332 1.014564 GTCTCCAAAGGAAGACGCCG 61.015 60.000 0.00 0.00 0.00 6.46
332 333 0.321996 AGTCTCCAAAGGAAGACGCC 59.678 55.000 0.00 0.00 36.08 5.68
333 334 2.882324 CTAGTCTCCAAAGGAAGACGC 58.118 52.381 0.00 0.00 36.08 5.19
334 335 2.732597 CGCTAGTCTCCAAAGGAAGACG 60.733 54.545 0.00 0.00 36.08 4.18
335 336 2.882324 CGCTAGTCTCCAAAGGAAGAC 58.118 52.381 0.00 0.00 33.36 3.01
336 337 1.204941 GCGCTAGTCTCCAAAGGAAGA 59.795 52.381 0.00 0.00 0.00 2.87
337 338 1.066858 TGCGCTAGTCTCCAAAGGAAG 60.067 52.381 9.73 0.00 0.00 3.46
338 339 0.973632 TGCGCTAGTCTCCAAAGGAA 59.026 50.000 9.73 0.00 0.00 3.36
339 340 0.246635 GTGCGCTAGTCTCCAAAGGA 59.753 55.000 9.73 0.00 0.00 3.36
340 341 0.741221 GGTGCGCTAGTCTCCAAAGG 60.741 60.000 9.73 0.00 0.00 3.11
341 342 0.037326 TGGTGCGCTAGTCTCCAAAG 60.037 55.000 9.73 0.00 0.00 2.77
342 343 0.394938 TTGGTGCGCTAGTCTCCAAA 59.605 50.000 9.73 0.00 35.61 3.28
343 344 0.613260 ATTGGTGCGCTAGTCTCCAA 59.387 50.000 9.73 17.01 41.40 3.53
344 345 0.175760 GATTGGTGCGCTAGTCTCCA 59.824 55.000 9.73 4.99 0.00 3.86
345 346 0.530870 GGATTGGTGCGCTAGTCTCC 60.531 60.000 9.73 6.03 0.00 3.71
346 347 0.175760 TGGATTGGTGCGCTAGTCTC 59.824 55.000 9.73 0.00 0.00 3.36
347 348 0.833287 ATGGATTGGTGCGCTAGTCT 59.167 50.000 9.73 0.00 0.00 3.24
348 349 1.221414 GATGGATTGGTGCGCTAGTC 58.779 55.000 9.73 0.00 0.00 2.59
349 350 0.179045 GGATGGATTGGTGCGCTAGT 60.179 55.000 9.73 0.00 0.00 2.57
393 397 0.546122 TCCCATGTGGTAGCCATGTC 59.454 55.000 16.84 0.00 38.39 3.06
444 449 1.455248 TCCAAAAGGGAATAACGCCG 58.545 50.000 0.00 0.00 44.80 6.46
478 483 2.348605 TTCACTTGCCCAAACGCTGC 62.349 55.000 0.00 0.00 0.00 5.25
490 495 4.153117 GTCAATCTGGTAGCACTTCACTTG 59.847 45.833 0.00 0.00 0.00 3.16
527 618 0.239347 CTTTTTGGAGCAGGACGCAG 59.761 55.000 0.00 0.00 46.13 5.18
593 689 0.874607 ACGACTGACTTGTTGCGACC 60.875 55.000 0.45 0.00 0.00 4.79
596 692 1.853319 GGACGACTGACTTGTTGCG 59.147 57.895 0.00 0.00 0.00 4.85
604 700 2.373269 CATTACGATCGGACGACTGAC 58.627 52.381 20.98 0.00 33.97 3.51
614 710 4.500837 GCCATAGAGTATGCATTACGATCG 59.499 45.833 14.88 14.88 35.84 3.69
648 744 1.212616 GATTTCTGATCGGACGGCTG 58.787 55.000 2.94 0.00 0.00 4.85
678 774 2.338620 TCGTGAGAACCTGTGGCG 59.661 61.111 0.00 0.00 37.03 5.69
699 795 4.084066 TCACGCATAAAGTGTTGACATGTC 60.084 41.667 19.27 19.27 39.40 3.06
720 816 7.513371 AATACCGGATTAAAAGTGTGTTTCA 57.487 32.000 9.46 0.00 0.00 2.69
769 904 1.750780 TGTGGTGTGCCTTTTCGCA 60.751 52.632 0.00 0.00 36.08 5.10
807 942 5.633601 ACGCATAATATATTCGGTGTGACTG 59.366 40.000 18.25 0.00 0.00 3.51
808 943 5.633601 CACGCATAATATATTCGGTGTGACT 59.366 40.000 24.57 6.66 36.97 3.41
810 945 4.387559 GCACGCATAATATATTCGGTGTGA 59.612 41.667 28.91 5.94 36.97 3.58
811 946 4.637968 GCACGCATAATATATTCGGTGTG 58.362 43.478 24.54 24.54 37.43 3.82
812 947 3.366724 CGCACGCATAATATATTCGGTGT 59.633 43.478 0.00 5.56 0.00 4.16
813 948 3.780957 GCGCACGCATAATATATTCGGTG 60.781 47.826 10.65 7.34 41.49 4.94
815 950 2.285602 GGCGCACGCATAATATATTCGG 60.286 50.000 17.69 0.00 44.11 4.30
816 951 2.594269 CGGCGCACGCATAATATATTCG 60.594 50.000 17.69 2.46 44.11 3.34
817 952 2.285602 CCGGCGCACGCATAATATATTC 60.286 50.000 17.69 0.00 44.11 1.75
818 953 1.663643 CCGGCGCACGCATAATATATT 59.336 47.619 17.69 2.97 44.11 1.28
819 954 1.134936 TCCGGCGCACGCATAATATAT 60.135 47.619 17.69 0.00 44.11 0.86
820 955 0.244178 TCCGGCGCACGCATAATATA 59.756 50.000 17.69 0.00 44.11 0.86
821 956 0.601576 TTCCGGCGCACGCATAATAT 60.602 50.000 17.69 0.00 44.11 1.28
822 957 0.601576 ATTCCGGCGCACGCATAATA 60.602 50.000 17.69 0.00 44.11 0.98
823 958 1.444119 AATTCCGGCGCACGCATAAT 61.444 50.000 17.69 9.70 44.11 1.28
824 959 1.649390 AAATTCCGGCGCACGCATAA 61.649 50.000 17.69 7.78 44.11 1.90
941 1083 3.008375 TCAGCTGAGCACTTGATTAGGTT 59.992 43.478 13.74 0.00 0.00 3.50
948 1090 3.969287 ATACTTCAGCTGAGCACTTGA 57.031 42.857 17.43 0.00 0.00 3.02
949 1091 4.931601 TGTTATACTTCAGCTGAGCACTTG 59.068 41.667 17.43 6.90 0.00 3.16
962 1104 2.386249 CGAGCTCGGCTGTTATACTTC 58.614 52.381 28.40 0.00 39.88 3.01
1090 1239 0.104120 CCATTGGTGATCTCGCGGTA 59.896 55.000 6.13 0.00 0.00 4.02
1167 1316 1.065928 CGTGTAGAGTGATCCGGGC 59.934 63.158 0.00 0.00 0.00 6.13
1229 1378 7.227910 ACTGAGATTTAGCACTTCCGTTAAAAA 59.772 33.333 0.00 0.00 0.00 1.94
1230 1379 6.708949 ACTGAGATTTAGCACTTCCGTTAAAA 59.291 34.615 0.00 0.00 0.00 1.52
1231 1380 6.228258 ACTGAGATTTAGCACTTCCGTTAAA 58.772 36.000 0.00 0.00 0.00 1.52
1232 1381 5.790593 ACTGAGATTTAGCACTTCCGTTAA 58.209 37.500 0.00 0.00 0.00 2.01
1233 1382 5.401531 ACTGAGATTTAGCACTTCCGTTA 57.598 39.130 0.00 0.00 0.00 3.18
1234 1383 4.246458 GACTGAGATTTAGCACTTCCGTT 58.754 43.478 0.00 0.00 0.00 4.44
1235 1384 3.673594 CGACTGAGATTTAGCACTTCCGT 60.674 47.826 0.00 0.00 0.00 4.69
1236 1385 2.854777 CGACTGAGATTTAGCACTTCCG 59.145 50.000 0.00 0.00 0.00 4.30
1237 1386 4.111375 TCGACTGAGATTTAGCACTTCC 57.889 45.455 0.00 0.00 0.00 3.46
1238 1387 5.164954 AGTTCGACTGAGATTTAGCACTTC 58.835 41.667 0.00 0.00 0.00 3.01
1239 1388 5.140747 AGTTCGACTGAGATTTAGCACTT 57.859 39.130 0.00 0.00 0.00 3.16
1240 1389 4.792521 AGTTCGACTGAGATTTAGCACT 57.207 40.909 0.00 0.00 0.00 4.40
1241 1390 6.251801 GTCTTAGTTCGACTGAGATTTAGCAC 59.748 42.308 10.89 0.00 41.85 4.40
1242 1391 6.151312 AGTCTTAGTTCGACTGAGATTTAGCA 59.849 38.462 10.89 0.00 41.85 3.49
1243 1392 6.557110 AGTCTTAGTTCGACTGAGATTTAGC 58.443 40.000 10.89 1.85 41.85 3.09
1244 1393 8.609478 GAAGTCTTAGTTCGACTGAGATTTAG 57.391 38.462 13.18 0.00 41.85 1.85
1264 1413 6.183360 ACAGTATCGACTAAGACTTCGAAGTC 60.183 42.308 39.13 39.13 46.65 3.01
1265 1414 5.642919 ACAGTATCGACTAAGACTTCGAAGT 59.357 40.000 30.12 30.12 46.65 3.01
1266 1415 6.109320 ACAGTATCGACTAAGACTTCGAAG 57.891 41.667 23.43 23.43 46.65 3.79
1267 1416 7.783090 ATACAGTATCGACTAAGACTTCGAA 57.217 36.000 0.00 0.00 46.65 3.71
1269 1418 7.628235 TGAATACAGTATCGACTAAGACTTCG 58.372 38.462 0.00 0.00 33.32 3.79
1270 1419 9.953697 AATGAATACAGTATCGACTAAGACTTC 57.046 33.333 0.00 0.00 33.32 3.01
1291 1440 9.667107 ACGGATCTTCAAGTAAAATCTAATGAA 57.333 29.630 0.00 0.00 0.00 2.57
1292 1441 9.098355 CACGGATCTTCAAGTAAAATCTAATGA 57.902 33.333 0.00 0.00 0.00 2.57
1293 1442 8.883731 ACACGGATCTTCAAGTAAAATCTAATG 58.116 33.333 0.00 0.00 0.00 1.90
1295 1444 9.932207 TTACACGGATCTTCAAGTAAAATCTAA 57.068 29.630 0.00 0.00 0.00 2.10
1296 1445 9.932207 TTTACACGGATCTTCAAGTAAAATCTA 57.068 29.630 0.00 0.00 31.01 1.98
1297 1446 8.842358 TTTACACGGATCTTCAAGTAAAATCT 57.158 30.769 0.00 0.00 31.01 2.40
1302 1451 9.887406 GAAAATTTTACACGGATCTTCAAGTAA 57.113 29.630 2.75 0.00 0.00 2.24
1303 1452 9.280174 AGAAAATTTTACACGGATCTTCAAGTA 57.720 29.630 2.75 0.00 0.00 2.24
1304 1453 8.166422 AGAAAATTTTACACGGATCTTCAAGT 57.834 30.769 2.75 0.00 0.00 3.16
1305 1454 9.463443 AAAGAAAATTTTACACGGATCTTCAAG 57.537 29.630 2.75 0.00 0.00 3.02
1306 1455 9.243637 CAAAGAAAATTTTACACGGATCTTCAA 57.756 29.630 2.75 0.00 0.00 2.69
1307 1456 8.625651 TCAAAGAAAATTTTACACGGATCTTCA 58.374 29.630 2.75 0.00 0.00 3.02
1308 1457 9.458374 TTCAAAGAAAATTTTACACGGATCTTC 57.542 29.630 2.75 0.00 0.00 2.87
1309 1458 9.463443 CTTCAAAGAAAATTTTACACGGATCTT 57.537 29.630 2.75 0.00 0.00 2.40
1310 1459 8.630037 ACTTCAAAGAAAATTTTACACGGATCT 58.370 29.630 2.75 0.00 0.00 2.75
1311 1460 8.797266 ACTTCAAAGAAAATTTTACACGGATC 57.203 30.769 2.75 0.00 0.00 3.36
1312 1461 9.244799 GAACTTCAAAGAAAATTTTACACGGAT 57.755 29.630 2.75 0.00 0.00 4.18
1313 1462 8.463607 AGAACTTCAAAGAAAATTTTACACGGA 58.536 29.630 2.75 0.00 0.00 4.69
1314 1463 8.628882 AGAACTTCAAAGAAAATTTTACACGG 57.371 30.769 2.75 0.00 0.00 4.94
1358 1507 9.831737 CGAAGTTTCTGTCAATGAATAGAATTT 57.168 29.630 10.62 8.97 0.00 1.82
1359 1508 9.003658 ACGAAGTTTCTGTCAATGAATAGAATT 57.996 29.630 10.62 5.15 37.78 2.17
1360 1509 8.553459 ACGAAGTTTCTGTCAATGAATAGAAT 57.447 30.769 10.62 0.00 37.78 2.40
1361 1510 7.962964 ACGAAGTTTCTGTCAATGAATAGAA 57.037 32.000 6.99 6.99 37.78 2.10
1380 1529 8.744008 TCTAATTTGACTGAGACTTAACGAAG 57.256 34.615 0.00 0.00 38.76 3.79
1381 1530 9.355215 GATCTAATTTGACTGAGACTTAACGAA 57.645 33.333 0.00 0.00 0.00 3.85
1382 1531 8.740906 AGATCTAATTTGACTGAGACTTAACGA 58.259 33.333 0.00 0.00 0.00 3.85
1383 1532 8.918961 AGATCTAATTTGACTGAGACTTAACG 57.081 34.615 0.00 0.00 0.00 3.18
1386 1535 8.634444 GGCTAGATCTAATTTGACTGAGACTTA 58.366 37.037 3.57 0.00 0.00 2.24
1387 1536 7.124901 TGGCTAGATCTAATTTGACTGAGACTT 59.875 37.037 3.57 0.00 0.00 3.01
1388 1537 6.609212 TGGCTAGATCTAATTTGACTGAGACT 59.391 38.462 3.57 0.00 0.00 3.24
1389 1538 6.699642 GTGGCTAGATCTAATTTGACTGAGAC 59.300 42.308 3.57 0.00 0.00 3.36
1390 1539 6.381133 TGTGGCTAGATCTAATTTGACTGAGA 59.619 38.462 3.57 0.00 0.00 3.27
1391 1540 6.577103 TGTGGCTAGATCTAATTTGACTGAG 58.423 40.000 3.57 0.00 0.00 3.35
1392 1541 6.544928 TGTGGCTAGATCTAATTTGACTGA 57.455 37.500 3.57 0.00 0.00 3.41
1393 1542 7.714377 AGAATGTGGCTAGATCTAATTTGACTG 59.286 37.037 3.57 0.00 0.00 3.51
1394 1543 7.800092 AGAATGTGGCTAGATCTAATTTGACT 58.200 34.615 3.57 0.00 0.00 3.41
1395 1544 8.443953 AAGAATGTGGCTAGATCTAATTTGAC 57.556 34.615 3.57 0.00 0.00 3.18
1396 1545 9.466497 AAAAGAATGTGGCTAGATCTAATTTGA 57.534 29.630 3.57 0.00 0.00 2.69
1399 1548 9.466497 TGAAAAAGAATGTGGCTAGATCTAATT 57.534 29.630 3.57 0.19 0.00 1.40
1400 1549 9.466497 TTGAAAAAGAATGTGGCTAGATCTAAT 57.534 29.630 3.57 0.00 0.00 1.73
1401 1550 8.862325 TTGAAAAAGAATGTGGCTAGATCTAA 57.138 30.769 3.57 0.00 0.00 2.10
1402 1551 8.862325 TTTGAAAAAGAATGTGGCTAGATCTA 57.138 30.769 1.69 1.69 0.00 1.98
1403 1552 7.765695 TTTGAAAAAGAATGTGGCTAGATCT 57.234 32.000 0.00 0.00 0.00 2.75
1404 1553 8.992835 ATTTTGAAAAAGAATGTGGCTAGATC 57.007 30.769 0.00 0.00 0.00 2.75
1408 1557 9.352784 CGATAATTTTGAAAAAGAATGTGGCTA 57.647 29.630 0.00 0.00 0.00 3.93
1409 1558 7.872483 ACGATAATTTTGAAAAAGAATGTGGCT 59.128 29.630 0.00 0.00 0.00 4.75
1410 1559 8.017587 ACGATAATTTTGAAAAAGAATGTGGC 57.982 30.769 0.00 0.00 0.00 5.01
1427 1576 9.646336 GCATGATAAAAACGAACTACGATAATT 57.354 29.630 0.00 0.00 45.77 1.40
1428 1577 8.822855 TGCATGATAAAAACGAACTACGATAAT 58.177 29.630 0.00 0.00 45.77 1.28
1429 1578 8.187354 TGCATGATAAAAACGAACTACGATAA 57.813 30.769 0.00 0.00 45.77 1.75
1430 1579 7.758613 TGCATGATAAAAACGAACTACGATA 57.241 32.000 0.00 0.00 45.77 2.92
1434 1583 6.027131 TGCATGCATGATAAAAACGAACTAC 58.973 36.000 30.64 6.85 0.00 2.73
1436 1585 5.058149 TGCATGCATGATAAAAACGAACT 57.942 34.783 30.64 0.00 0.00 3.01
1437 1586 5.954434 ATGCATGCATGATAAAAACGAAC 57.046 34.783 31.74 8.14 35.03 3.95
1461 1614 0.604578 AAACTAAGGCCGAGTGCGTA 59.395 50.000 13.44 0.00 42.61 4.42
1473 1626 7.499895 TGTTTGTACCACCTTCCTTAAACTAAG 59.500 37.037 0.00 0.00 35.56 2.18
1477 1630 6.644248 ATGTTTGTACCACCTTCCTTAAAC 57.356 37.500 0.00 0.00 0.00 2.01
1478 1631 7.663043 AAATGTTTGTACCACCTTCCTTAAA 57.337 32.000 0.00 0.00 0.00 1.52
1479 1632 7.778853 TGTAAATGTTTGTACCACCTTCCTTAA 59.221 33.333 0.00 0.00 0.00 1.85
1481 1634 6.130569 TGTAAATGTTTGTACCACCTTCCTT 58.869 36.000 0.00 0.00 0.00 3.36
1482 1635 5.697067 TGTAAATGTTTGTACCACCTTCCT 58.303 37.500 0.00 0.00 0.00 3.36
1483 1636 6.015772 ACATGTAAATGTTTGTACCACCTTCC 60.016 38.462 0.00 0.00 0.00 3.46
1484 1637 6.861055 CACATGTAAATGTTTGTACCACCTTC 59.139 38.462 0.00 0.00 31.37 3.46
1486 1639 5.830991 ACACATGTAAATGTTTGTACCACCT 59.169 36.000 0.00 0.00 31.37 4.00
1488 1641 6.966021 AGACACATGTAAATGTTTGTACCAC 58.034 36.000 0.00 0.00 31.37 4.16
1489 1642 8.856153 ATAGACACATGTAAATGTTTGTACCA 57.144 30.769 0.00 0.00 31.37 3.25
1490 1643 9.162764 AGATAGACACATGTAAATGTTTGTACC 57.837 33.333 0.00 0.00 31.37 3.34
1501 1654 9.191995 CGCATAAACATAGATAGACACATGTAA 57.808 33.333 0.00 0.00 31.55 2.41
1502 1655 7.328493 GCGCATAAACATAGATAGACACATGTA 59.672 37.037 0.30 0.00 31.55 2.29
1504 1657 6.528826 GCGCATAAACATAGATAGACACATG 58.471 40.000 0.30 0.00 0.00 3.21
1505 1658 5.346011 CGCGCATAAACATAGATAGACACAT 59.654 40.000 8.75 0.00 0.00 3.21
1506 1659 4.679654 CGCGCATAAACATAGATAGACACA 59.320 41.667 8.75 0.00 0.00 3.72
1507 1660 4.433022 GCGCGCATAAACATAGATAGACAC 60.433 45.833 29.10 0.00 0.00 3.67
1508 1661 3.673338 GCGCGCATAAACATAGATAGACA 59.327 43.478 29.10 0.00 0.00 3.41
1509 1662 3.673338 TGCGCGCATAAACATAGATAGAC 59.327 43.478 33.09 0.00 0.00 2.59
1510 1663 3.908213 TGCGCGCATAAACATAGATAGA 58.092 40.909 33.09 0.00 0.00 1.98
1511 1664 4.847365 ATGCGCGCATAAACATAGATAG 57.153 40.909 42.74 0.00 34.49 2.08
1512 1665 5.867174 ACTTATGCGCGCATAAACATAGATA 59.133 36.000 46.22 31.10 44.95 1.98
1513 1666 4.690748 ACTTATGCGCGCATAAACATAGAT 59.309 37.500 46.22 29.98 44.95 1.98
1514 1667 4.055360 ACTTATGCGCGCATAAACATAGA 58.945 39.130 46.22 32.25 44.95 1.98
1515 1668 4.389664 ACTTATGCGCGCATAAACATAG 57.610 40.909 46.22 39.28 44.95 2.23
1516 1669 5.908916 TTACTTATGCGCGCATAAACATA 57.091 34.783 46.22 37.28 44.95 2.29
1517 1670 4.804608 TTACTTATGCGCGCATAAACAT 57.195 36.364 46.22 38.07 44.95 2.71
1518 1671 4.034626 ACATTACTTATGCGCGCATAAACA 59.965 37.500 46.22 37.46 44.95 2.83
1519 1672 4.375698 CACATTACTTATGCGCGCATAAAC 59.624 41.667 46.22 18.40 44.95 2.01
1520 1673 4.271291 TCACATTACTTATGCGCGCATAAA 59.729 37.500 46.22 37.74 44.95 1.40
1521 1674 3.804873 TCACATTACTTATGCGCGCATAA 59.195 39.130 45.41 45.41 43.92 1.90
1522 1675 3.385577 TCACATTACTTATGCGCGCATA 58.614 40.909 41.47 41.47 37.81 3.14
1523 1676 2.209273 TCACATTACTTATGCGCGCAT 58.791 42.857 43.68 43.68 37.81 4.73
1527 1680 2.290367 TGCCATCACATTACTTATGCGC 59.710 45.455 0.00 0.00 37.81 6.09
1528 1681 4.469552 CATGCCATCACATTACTTATGCG 58.530 43.478 0.00 0.00 37.81 4.73
1531 1684 8.413309 AATAAGCATGCCATCACATTACTTAT 57.587 30.769 15.66 4.41 37.88 1.73
1535 1688 6.275335 ACAAATAAGCATGCCATCACATTAC 58.725 36.000 15.66 0.00 0.00 1.89
1543 1696 5.187576 ACCTTGTAACAAATAAGCATGCCAT 59.812 36.000 15.66 6.44 0.00 4.40
1546 1699 5.708948 TCACCTTGTAACAAATAAGCATGC 58.291 37.500 10.51 10.51 0.00 4.06
1551 1704 8.665685 GTCTACCATCACCTTGTAACAAATAAG 58.334 37.037 0.00 0.00 0.00 1.73
1563 1716 2.188817 GTCAGGGTCTACCATCACCTT 58.811 52.381 0.81 0.00 43.89 3.50
1583 1736 2.431057 AGGATTGCTTGGACTAGGTACG 59.569 50.000 0.00 0.00 0.00 3.67
1592 1745 1.886222 CGTTGGGAAGGATTGCTTGGA 60.886 52.381 0.00 0.00 36.31 3.53
1728 1963 7.147811 TGTGTAGGCAAGAAATTAAACTTGGTT 60.148 33.333 16.20 0.00 42.26 3.67
1793 2028 9.553064 AGATAGATTAATTTCTTACCACAGCTG 57.447 33.333 13.48 13.48 0.00 4.24
1846 2171 2.223464 ATTAATGCCGGCTGGGTGGT 62.223 55.000 29.70 7.11 38.44 4.16
1868 2193 5.068460 CACAAAGGTCTTAATGGTTTCCACA 59.932 40.000 0.00 0.00 35.80 4.17
2139 2477 4.845177 CGTGCGTACGTAGAACCA 57.155 55.556 18.32 1.71 44.99 3.67
2157 2495 1.299089 TATGGAGCGATCGTGCGTG 60.299 57.895 17.81 0.00 40.67 5.34
2162 2500 2.890808 ATTGTGTATGGAGCGATCGT 57.109 45.000 17.81 3.24 0.00 3.73
2178 2516 4.024556 GCTACACCTAGCTTGCACATATTG 60.025 45.833 0.00 0.00 42.11 1.90
2180 2518 3.733337 GCTACACCTAGCTTGCACATAT 58.267 45.455 0.00 0.00 42.11 1.78
2181 2519 3.179443 GCTACACCTAGCTTGCACATA 57.821 47.619 0.00 0.00 42.11 2.29
2182 2520 2.029838 GCTACACCTAGCTTGCACAT 57.970 50.000 0.00 0.00 42.11 3.21
2183 2521 3.532896 GCTACACCTAGCTTGCACA 57.467 52.632 0.00 0.00 42.11 4.57
2190 2528 2.961526 TACAAGCAGCTACACCTAGC 57.038 50.000 0.00 0.00 45.30 3.42
2191 2529 5.902681 TGTATTACAAGCAGCTACACCTAG 58.097 41.667 0.00 0.00 0.00 3.02
2192 2530 5.925506 TGTATTACAAGCAGCTACACCTA 57.074 39.130 0.00 0.00 0.00 3.08
2194 2532 4.511826 GGATGTATTACAAGCAGCTACACC 59.488 45.833 0.00 0.00 0.00 4.16
2195 2533 4.209288 CGGATGTATTACAAGCAGCTACAC 59.791 45.833 0.00 0.00 0.00 2.90
2196 2534 4.368315 CGGATGTATTACAAGCAGCTACA 58.632 43.478 0.00 0.00 0.00 2.74
2218 2584 4.400120 AGATAGCTAGCCAGTAGTACACC 58.600 47.826 12.13 0.00 0.00 4.16
2224 2590 2.745281 GGTCGAGATAGCTAGCCAGTAG 59.255 54.545 12.13 0.00 0.00 2.57
2302 2668 7.591426 CAGACGCTCCCTAAAATTATTTAATGC 59.409 37.037 0.00 0.00 30.87 3.56
2328 2694 6.208988 TGATGTCAGGTGTAGATGAGTTAC 57.791 41.667 0.00 0.00 0.00 2.50
2335 2701 5.682234 TCACAATGATGTCAGGTGTAGAT 57.318 39.130 13.72 0.00 37.82 1.98
2346 2712 6.662234 AGATCCAGTTCAAATCACAATGATGT 59.338 34.615 0.00 0.00 37.15 3.06
2370 2736 0.396811 AGGGTGACGAAGGGTGAAAG 59.603 55.000 0.00 0.00 0.00 2.62
2375 2741 1.405272 AAACGAGGGTGACGAAGGGT 61.405 55.000 0.00 0.00 34.70 4.34
2377 2743 1.566018 GCAAACGAGGGTGACGAAGG 61.566 60.000 0.00 0.00 34.70 3.46
2378 2744 1.860078 GCAAACGAGGGTGACGAAG 59.140 57.895 0.00 0.00 34.70 3.79
2379 2745 1.952133 CGCAAACGAGGGTGACGAA 60.952 57.895 0.00 0.00 43.93 3.85
2382 2748 1.155424 TCAACGCAAACGAGGGTGAC 61.155 55.000 0.00 0.00 43.93 3.67
2385 2751 0.463116 AAGTCAACGCAAACGAGGGT 60.463 50.000 0.00 0.00 43.93 4.34
2411 2777 4.007659 CGGGCAATTTTCTAGTACCAAGT 58.992 43.478 0.00 0.00 0.00 3.16
2412 2778 4.007659 ACGGGCAATTTTCTAGTACCAAG 58.992 43.478 0.00 0.00 0.00 3.61
2413 2779 3.754323 CACGGGCAATTTTCTAGTACCAA 59.246 43.478 0.00 0.00 0.00 3.67
2414 2780 3.340034 CACGGGCAATTTTCTAGTACCA 58.660 45.455 0.00 0.00 0.00 3.25
2415 2781 2.096980 GCACGGGCAATTTTCTAGTACC 59.903 50.000 3.77 0.00 40.72 3.34
2416 2782 2.222953 CGCACGGGCAATTTTCTAGTAC 60.223 50.000 11.77 0.00 41.24 2.73
2423 2789 1.953642 GCAACGCACGGGCAATTTT 60.954 52.632 11.77 0.00 41.24 1.82
2509 2875 4.360563 TCGCATCTCTTATTTCGGTTCTC 58.639 43.478 0.00 0.00 0.00 2.87
2763 3151 2.420408 GCGGGTGCCAAAGGTATACTAA 60.420 50.000 2.25 0.00 33.98 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.