Multiple sequence alignment - TraesCS2A01G484900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G484900 chr2A 100.000 3160 0 0 1 3160 719738361 719735202 0.000000e+00 5836.0
1 TraesCS2A01G484900 chr2A 78.622 1974 328 58 246 2160 751173096 751175034 0.000000e+00 1221.0
2 TraesCS2A01G484900 chr2A 81.384 1402 190 46 435 1811 751014969 751016324 0.000000e+00 1077.0
3 TraesCS2A01G484900 chr2A 82.053 1276 172 36 559 1811 751048538 751049779 0.000000e+00 1035.0
4 TraesCS2A01G484900 chr2A 86.505 741 93 3 839 1572 751055333 751056073 0.000000e+00 808.0
5 TraesCS2A01G484900 chr2A 86.000 250 32 3 1 248 751172003 751172251 6.720000e-67 265.0
6 TraesCS2A01G484900 chr2A 84.980 253 29 6 1 248 751037342 751037590 6.770000e-62 248.0
7 TraesCS2A01G484900 chr2A 76.104 385 77 13 822 1199 750570419 750570795 1.500000e-43 187.0
8 TraesCS2A01G484900 chr2D 93.817 2426 133 8 246 2661 585694554 585692136 0.000000e+00 3633.0
9 TraesCS2A01G484900 chr2D 82.852 1767 246 38 544 2266 619575081 619576834 0.000000e+00 1531.0
10 TraesCS2A01G484900 chr2D 81.629 1056 149 32 519 1557 585738404 585737377 0.000000e+00 833.0
11 TraesCS2A01G484900 chr2D 78.404 727 107 27 1637 2358 585684951 585684270 8.100000e-116 427.0
12 TraesCS2A01G484900 chr2D 95.968 248 10 0 1 248 585740433 585740186 1.370000e-108 403.0
13 TraesCS2A01G484900 chr2D 85.081 248 35 2 1 247 619566066 619566312 5.230000e-63 252.0
14 TraesCS2A01G484900 chr2D 76.883 385 74 13 822 1199 619414981 619415357 1.490000e-48 204.0
15 TraesCS2A01G484900 chr2B 85.588 2151 242 33 542 2658 706790809 706788693 0.000000e+00 2193.0
16 TraesCS2A01G484900 chr2B 82.283 1778 241 48 542 2266 758898353 758900109 0.000000e+00 1471.0
17 TraesCS2A01G484900 chr2B 76.375 800 165 19 981 1773 758794323 758793541 2.930000e-110 409.0
18 TraesCS2A01G484900 chr2B 83.295 437 52 13 2716 3149 706734810 706734392 1.780000e-102 383.0
19 TraesCS2A01G484900 chr2B 82.184 348 57 3 2021 2363 706920915 706920568 8.570000e-76 294.0
20 TraesCS2A01G484900 chr2B 81.525 341 58 3 2028 2363 706729301 706728961 3.100000e-70 276.0
21 TraesCS2A01G484900 chr2B 85.484 248 34 2 1 247 758666353 758666599 1.120000e-64 257.0
22 TraesCS2A01G484900 chr5A 77.041 196 35 8 2716 2907 596480722 596480911 1.550000e-18 104.0
23 TraesCS2A01G484900 chr5A 90.909 44 1 3 2874 2917 429517290 429517250 4.400000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G484900 chr2A 719735202 719738361 3159 True 5836 5836 100.0000 1 3160 1 chr2A.!!$R1 3159
1 TraesCS2A01G484900 chr2A 751014969 751016324 1355 False 1077 1077 81.3840 435 1811 1 chr2A.!!$F2 1376
2 TraesCS2A01G484900 chr2A 751048538 751049779 1241 False 1035 1035 82.0530 559 1811 1 chr2A.!!$F4 1252
3 TraesCS2A01G484900 chr2A 751055333 751056073 740 False 808 808 86.5050 839 1572 1 chr2A.!!$F5 733
4 TraesCS2A01G484900 chr2A 751172003 751175034 3031 False 743 1221 82.3110 1 2160 2 chr2A.!!$F6 2159
5 TraesCS2A01G484900 chr2D 585692136 585694554 2418 True 3633 3633 93.8170 246 2661 1 chr2D.!!$R2 2415
6 TraesCS2A01G484900 chr2D 619575081 619576834 1753 False 1531 1531 82.8520 544 2266 1 chr2D.!!$F3 1722
7 TraesCS2A01G484900 chr2D 585737377 585740433 3056 True 618 833 88.7985 1 1557 2 chr2D.!!$R3 1556
8 TraesCS2A01G484900 chr2D 585684270 585684951 681 True 427 427 78.4040 1637 2358 1 chr2D.!!$R1 721
9 TraesCS2A01G484900 chr2B 706788693 706790809 2116 True 2193 2193 85.5880 542 2658 1 chr2B.!!$R3 2116
10 TraesCS2A01G484900 chr2B 758898353 758900109 1756 False 1471 1471 82.2830 542 2266 1 chr2B.!!$F2 1724
11 TraesCS2A01G484900 chr2B 758793541 758794323 782 True 409 409 76.3750 981 1773 1 chr2B.!!$R5 792

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 238 1.094073 ATCGCCAGCAGTTCTCATGC 61.094 55.0 0.00 0.0 44.18 4.06 F
1252 2867 0.179045 AGGAGCATGCCCGATGTTAC 60.179 55.0 15.66 0.0 34.14 2.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 3604 0.820871 TGGACACACAAAAGGCCAAC 59.179 50.0 5.01 0.0 0.0 3.77 R
2669 4330 0.029567 CGATACAGACCAGGAGACGC 59.970 60.0 0.00 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 7.439056 CCTGTTATTGATTTGTTTCTGCAAGTT 59.561 33.333 0.00 0.00 33.76 2.66
98 100 2.146342 CAAGCTCGTCTCAAATGGTGT 58.854 47.619 0.00 0.00 0.00 4.16
139 141 4.164221 TCTTCTCCCTGACAAACTCAACTT 59.836 41.667 0.00 0.00 0.00 2.66
182 184 4.489771 CCACCACATCCCCGAGCC 62.490 72.222 0.00 0.00 0.00 4.70
216 218 2.795973 GCAAACCGCGATAACCCC 59.204 61.111 8.23 0.00 0.00 4.95
236 238 1.094073 ATCGCCAGCAGTTCTCATGC 61.094 55.000 0.00 0.00 44.18 4.06
254 1640 7.370383 TCTCATGCTAAGTTGGTTCAAATTTC 58.630 34.615 0.00 0.00 33.71 2.17
319 1709 1.867233 CTTGTTTGGTGACCTCAGACG 59.133 52.381 2.11 0.00 0.00 4.18
331 1721 5.123502 GTGACCTCAGACGATCTTACACTAA 59.876 44.000 0.00 0.00 0.00 2.24
486 2038 8.621532 TCAAAAGTTGACCTGGATATATATGC 57.378 34.615 7.26 7.26 34.08 3.14
609 2195 6.157645 ACTCCCAGTCTTGTCAATTCTATCAT 59.842 38.462 0.00 0.00 0.00 2.45
669 2256 5.066375 TCAAGAGGTTGGCAATATTCGATTG 59.934 40.000 1.92 3.49 34.09 2.67
694 2282 4.970003 GCAGCCAAATACATCGATGTTAAC 59.030 41.667 34.06 17.96 41.97 2.01
744 2340 2.299326 ACTGAAGGCAAGCTCCAAAT 57.701 45.000 0.00 0.00 0.00 2.32
872 2475 5.301805 ACAAACGGTTTCTCTGATTCCAATT 59.698 36.000 2.51 0.00 0.00 2.32
941 2544 8.940952 AGATTTCACTTTGACAATTAGAGTAGC 58.059 33.333 0.00 0.00 0.00 3.58
1038 2653 8.789762 GTTAAAAGGCTTACCAAGTATTCTGAA 58.210 33.333 0.00 0.00 39.06 3.02
1135 2750 1.412710 GTTCCTGCATCCGTGGAGATA 59.587 52.381 0.00 0.00 45.73 1.98
1211 2826 7.066284 CCTTTTTGGTATGTCCTGATCACTTAG 59.934 40.741 0.00 0.00 37.07 2.18
1252 2867 0.179045 AGGAGCATGCCCGATGTTAC 60.179 55.000 15.66 0.00 34.14 2.50
1414 3029 8.034804 TGACGATAATTCACAGAGATCTCAAAA 58.965 33.333 24.39 12.39 0.00 2.44
1425 3040 6.712095 ACAGAGATCTCAAAACAAGCAACATA 59.288 34.615 24.39 0.00 0.00 2.29
1490 3105 1.815003 GGCAAGGATCTTTGGTGACAG 59.185 52.381 18.18 0.00 44.54 3.51
1494 3109 1.637553 AGGATCTTTGGTGACAGCCAT 59.362 47.619 1.47 0.00 44.54 4.40
1537 3152 7.441836 ACATGTTGTCAGAACATAGTGAGTAA 58.558 34.615 0.00 0.00 38.69 2.24
1608 3238 7.702348 GCTTCAACTAATTATACTTTTGGGCAG 59.298 37.037 0.00 0.00 0.00 4.85
1616 3246 4.853924 ATACTTTTGGGCAGTTGTGAAG 57.146 40.909 0.00 0.00 0.00 3.02
1652 3282 4.222810 TGGCTATATGTCGCCTGAATATGT 59.777 41.667 6.56 0.00 46.42 2.29
1705 3335 3.687572 CGTATAGCTACGGTGTCTTGT 57.312 47.619 0.00 0.00 45.51 3.16
1707 3337 3.789756 CGTATAGCTACGGTGTCTTGTTG 59.210 47.826 0.00 0.00 45.51 3.33
1737 3367 7.690256 AGATTGTAAGTGGGTTAAAGATCAGT 58.310 34.615 0.00 0.00 0.00 3.41
1876 3518 2.229784 CCTTGTTTCAGGCATGGAACTC 59.770 50.000 22.18 0.00 44.21 3.01
1914 3556 3.082619 AGGGATTTCCTGGACACGA 57.917 52.632 0.00 0.00 46.07 4.35
1962 3604 3.253921 TCAAGTGTCTTTGTGCATCCATG 59.746 43.478 0.00 0.00 0.00 3.66
1990 3632 2.113986 GTGTGTCCAAGGCTGCCT 59.886 61.111 17.22 17.22 33.87 4.75
2037 3679 1.616374 TCGTGTCTATGCTGGACAACA 59.384 47.619 8.13 0.00 43.90 3.33
2068 3710 0.250209 CTCACAACACCAGAGCAGCT 60.250 55.000 0.00 0.00 0.00 4.24
2135 3777 4.439057 AGAACTCTGTTAACAACGCAAGA 58.561 39.130 10.03 1.44 43.62 3.02
2145 3787 2.288666 ACAACGCAAGACTGACAACAT 58.711 42.857 0.00 0.00 43.62 2.71
2305 3962 0.105964 CGCCCTCATCCGATGGTTAA 59.894 55.000 8.54 0.00 29.99 2.01
2306 3963 1.474320 CGCCCTCATCCGATGGTTAAA 60.474 52.381 8.54 0.00 29.99 1.52
2367 4024 6.017440 GCTTATAAATCTTATTGTGGTCGGCA 60.017 38.462 0.00 0.00 0.00 5.69
2392 4049 4.541973 TCTTGCTGCTTGAGATCAACTA 57.458 40.909 0.00 0.00 0.00 2.24
2407 4064 3.724478 TCAACTACTGGGATCCATGACT 58.276 45.455 15.23 0.00 30.82 3.41
2454 4111 5.129320 GGAGGGAAATGAGGTTGCAATTATT 59.871 40.000 0.59 0.00 0.00 1.40
2513 4170 7.757941 TGTTCAATGATTGTGTTGAATCCTA 57.242 32.000 4.93 0.00 43.70 2.94
2527 4184 6.643770 TGTTGAATCCTAGTGTCGAAACTAAC 59.356 38.462 16.18 11.62 32.35 2.34
2530 4187 4.778534 TCCTAGTGTCGAAACTAACTGG 57.221 45.455 16.18 13.67 32.35 4.00
2531 4188 3.057033 TCCTAGTGTCGAAACTAACTGGC 60.057 47.826 16.18 0.00 32.35 4.85
2532 4189 3.056749 CCTAGTGTCGAAACTAACTGGCT 60.057 47.826 16.18 0.00 32.35 4.75
2535 4192 3.808174 AGTGTCGAAACTAACTGGCTTTC 59.192 43.478 6.42 0.00 0.00 2.62
2536 4193 3.808174 GTGTCGAAACTAACTGGCTTTCT 59.192 43.478 0.00 0.00 0.00 2.52
2607 4267 9.567702 AATAATCTCTATTGCCTAAGAGGGTAT 57.432 33.333 6.49 3.25 39.79 2.73
2613 4273 7.016914 TCTATTGCCTAAGAGGGTATGTGTAT 58.983 38.462 0.00 0.00 35.37 2.29
2618 4278 7.277396 TGCCTAAGAGGGTATGTGTATAAAAC 58.723 38.462 0.00 0.00 35.37 2.43
2661 4322 2.161609 GGTGATTGTGAAAACCTAGCCG 59.838 50.000 0.00 0.00 0.00 5.52
2662 4323 2.161609 GTGATTGTGAAAACCTAGCCGG 59.838 50.000 0.00 0.00 39.35 6.13
2663 4324 1.743394 GATTGTGAAAACCTAGCCGGG 59.257 52.381 2.18 0.00 36.97 5.73
2664 4325 0.250989 TTGTGAAAACCTAGCCGGGG 60.251 55.000 2.18 0.00 36.97 5.73
2665 4326 1.378119 GTGAAAACCTAGCCGGGGG 60.378 63.158 2.18 0.00 36.97 5.40
2678 4339 4.785453 GGGGGCAAGCGTCTCCTG 62.785 72.222 0.00 0.00 0.00 3.86
2679 4340 4.785453 GGGGCAAGCGTCTCCTGG 62.785 72.222 0.00 0.00 0.00 4.45
2680 4341 4.021925 GGGCAAGCGTCTCCTGGT 62.022 66.667 0.00 0.00 0.00 4.00
2681 4342 2.435059 GGCAAGCGTCTCCTGGTC 60.435 66.667 0.00 0.00 0.00 4.02
2682 4343 2.659610 GCAAGCGTCTCCTGGTCT 59.340 61.111 0.00 0.00 0.00 3.85
2683 4344 1.739562 GCAAGCGTCTCCTGGTCTG 60.740 63.158 0.00 0.00 0.00 3.51
2684 4345 1.668294 CAAGCGTCTCCTGGTCTGT 59.332 57.895 0.00 0.00 0.00 3.41
2685 4346 0.888619 CAAGCGTCTCCTGGTCTGTA 59.111 55.000 0.00 0.00 0.00 2.74
2686 4347 1.478510 CAAGCGTCTCCTGGTCTGTAT 59.521 52.381 0.00 0.00 0.00 2.29
2687 4348 1.394618 AGCGTCTCCTGGTCTGTATC 58.605 55.000 0.00 0.00 0.00 2.24
2688 4349 0.029567 GCGTCTCCTGGTCTGTATCG 59.970 60.000 0.00 0.00 0.00 2.92
2689 4350 1.664873 CGTCTCCTGGTCTGTATCGA 58.335 55.000 0.00 0.00 0.00 3.59
2690 4351 2.222886 CGTCTCCTGGTCTGTATCGAT 58.777 52.381 2.16 2.16 0.00 3.59
2691 4352 2.031595 CGTCTCCTGGTCTGTATCGATG 60.032 54.545 8.54 0.00 0.00 3.84
2692 4353 3.215151 GTCTCCTGGTCTGTATCGATGA 58.785 50.000 8.54 0.00 0.00 2.92
2693 4354 3.003897 GTCTCCTGGTCTGTATCGATGAC 59.996 52.174 8.54 7.00 0.00 3.06
2694 4355 3.117851 TCTCCTGGTCTGTATCGATGACT 60.118 47.826 8.54 0.00 0.00 3.41
2695 4356 3.632333 TCCTGGTCTGTATCGATGACTT 58.368 45.455 8.54 0.00 0.00 3.01
2696 4357 4.023980 TCCTGGTCTGTATCGATGACTTT 58.976 43.478 8.54 0.00 0.00 2.66
2697 4358 4.466370 TCCTGGTCTGTATCGATGACTTTT 59.534 41.667 8.54 0.00 0.00 2.27
2698 4359 4.806247 CCTGGTCTGTATCGATGACTTTTC 59.194 45.833 8.54 0.00 0.00 2.29
2699 4360 4.421058 TGGTCTGTATCGATGACTTTTCG 58.579 43.478 8.54 0.00 37.94 3.46
2705 4366 2.743636 TCGATGACTTTTCGAAGGCT 57.256 45.000 0.00 0.00 42.21 4.58
2706 4367 3.861276 TCGATGACTTTTCGAAGGCTA 57.139 42.857 0.00 0.00 42.21 3.93
2707 4368 3.508762 TCGATGACTTTTCGAAGGCTAC 58.491 45.455 0.00 0.00 42.21 3.58
2708 4369 3.192844 TCGATGACTTTTCGAAGGCTACT 59.807 43.478 0.00 0.00 42.21 2.57
2709 4370 3.927142 CGATGACTTTTCGAAGGCTACTT 59.073 43.478 0.00 0.00 38.88 2.24
2724 4385 6.952773 AGGCTACTTCTAGTCTTCTACATG 57.047 41.667 0.00 0.00 30.01 3.21
2725 4386 5.300792 AGGCTACTTCTAGTCTTCTACATGC 59.699 44.000 0.00 0.00 30.01 4.06
2726 4387 5.300792 GGCTACTTCTAGTCTTCTACATGCT 59.699 44.000 0.00 0.00 0.00 3.79
2727 4388 6.435428 GCTACTTCTAGTCTTCTACATGCTC 58.565 44.000 0.00 0.00 0.00 4.26
2728 4389 5.845391 ACTTCTAGTCTTCTACATGCTCC 57.155 43.478 0.00 0.00 0.00 4.70
2729 4390 5.515106 ACTTCTAGTCTTCTACATGCTCCT 58.485 41.667 0.00 0.00 0.00 3.69
2730 4391 5.359576 ACTTCTAGTCTTCTACATGCTCCTG 59.640 44.000 0.00 0.00 0.00 3.86
2731 4392 5.117406 TCTAGTCTTCTACATGCTCCTGA 57.883 43.478 0.00 0.00 0.00 3.86
2732 4393 5.129634 TCTAGTCTTCTACATGCTCCTGAG 58.870 45.833 0.00 0.00 0.00 3.35
2733 4394 3.707316 AGTCTTCTACATGCTCCTGAGT 58.293 45.455 0.00 0.00 0.00 3.41
2734 4395 4.093011 AGTCTTCTACATGCTCCTGAGTT 58.907 43.478 0.00 0.00 0.00 3.01
2735 4396 4.530161 AGTCTTCTACATGCTCCTGAGTTT 59.470 41.667 0.00 0.00 0.00 2.66
2736 4397 4.867608 GTCTTCTACATGCTCCTGAGTTTC 59.132 45.833 0.00 0.00 0.00 2.78
2737 4398 3.510388 TCTACATGCTCCTGAGTTTCG 57.490 47.619 0.00 0.00 0.00 3.46
2738 4399 3.089284 TCTACATGCTCCTGAGTTTCGA 58.911 45.455 0.00 0.00 0.00 3.71
2739 4400 2.839486 ACATGCTCCTGAGTTTCGAA 57.161 45.000 0.00 0.00 0.00 3.71
2740 4401 3.126001 ACATGCTCCTGAGTTTCGAAA 57.874 42.857 6.47 6.47 0.00 3.46
2741 4402 3.476552 ACATGCTCCTGAGTTTCGAAAA 58.523 40.909 13.10 0.00 0.00 2.29
2742 4403 3.882888 ACATGCTCCTGAGTTTCGAAAAA 59.117 39.130 13.10 0.56 0.00 1.94
2743 4404 4.023707 ACATGCTCCTGAGTTTCGAAAAAG 60.024 41.667 13.10 10.41 0.00 2.27
2744 4405 3.541632 TGCTCCTGAGTTTCGAAAAAGT 58.458 40.909 13.10 0.00 0.00 2.66
2745 4406 3.945285 TGCTCCTGAGTTTCGAAAAAGTT 59.055 39.130 13.10 0.00 0.00 2.66
2746 4407 4.398044 TGCTCCTGAGTTTCGAAAAAGTTT 59.602 37.500 13.10 0.00 0.00 2.66
2747 4408 4.735338 GCTCCTGAGTTTCGAAAAAGTTTG 59.265 41.667 13.10 2.28 0.00 2.93
2748 4409 4.668289 TCCTGAGTTTCGAAAAAGTTTGC 58.332 39.130 13.10 0.00 0.00 3.68
2749 4410 4.156922 TCCTGAGTTTCGAAAAAGTTTGCA 59.843 37.500 13.10 2.82 0.00 4.08
2750 4411 5.043248 CCTGAGTTTCGAAAAAGTTTGCAT 58.957 37.500 13.10 0.00 0.00 3.96
2751 4412 5.173854 CCTGAGTTTCGAAAAAGTTTGCATC 59.826 40.000 13.10 0.00 0.00 3.91
2752 4413 4.732923 TGAGTTTCGAAAAAGTTTGCATCG 59.267 37.500 13.10 10.71 34.98 3.84
2753 4414 4.041723 AGTTTCGAAAAAGTTTGCATCGG 58.958 39.130 13.10 2.46 34.47 4.18
2754 4415 2.044888 TCGAAAAAGTTTGCATCGGC 57.955 45.000 14.78 0.00 41.68 5.54
2764 4425 2.025156 GCATCGGCAAGGCGAATG 59.975 61.111 22.21 19.24 40.72 2.67
2765 4426 2.025156 CATCGGCAAGGCGAATGC 59.975 61.111 22.21 4.68 43.08 3.56
2775 4436 4.445699 GCGAATGCCTAGAGGTGG 57.554 61.111 0.00 0.00 37.57 4.61
2783 4444 3.393472 CCTAGAGGTGGCATCAAGC 57.607 57.895 0.00 0.00 44.65 4.01
2784 4445 0.835941 CCTAGAGGTGGCATCAAGCT 59.164 55.000 0.00 0.00 44.79 3.74
2785 4446 2.042464 CCTAGAGGTGGCATCAAGCTA 58.958 52.381 0.00 0.00 44.79 3.32
2786 4447 2.636893 CCTAGAGGTGGCATCAAGCTAT 59.363 50.000 0.00 0.00 44.79 2.97
2787 4448 2.634815 AGAGGTGGCATCAAGCTATG 57.365 50.000 0.00 0.00 44.79 2.23
2796 4457 2.860009 CATCAAGCTATGCTCATGGGT 58.140 47.619 0.00 0.00 38.25 4.51
2797 4458 2.336945 TCAAGCTATGCTCATGGGTG 57.663 50.000 0.00 0.00 38.25 4.61
2798 4459 0.666913 CAAGCTATGCTCATGGGTGC 59.333 55.000 0.00 0.00 38.25 5.01
2799 4460 0.256752 AAGCTATGCTCATGGGTGCA 59.743 50.000 10.37 10.37 46.34 4.57
2800 4461 0.465097 AGCTATGCTCATGGGTGCAC 60.465 55.000 8.80 8.80 45.26 4.57
2801 4462 1.450531 GCTATGCTCATGGGTGCACC 61.451 60.000 28.57 28.57 45.26 5.01
2802 4463 1.153188 TATGCTCATGGGTGCACCG 60.153 57.895 29.08 16.05 45.26 4.94
2805 4466 4.720902 CTCATGGGTGCACCGCCA 62.721 66.667 29.08 22.20 44.64 5.69
2806 4467 4.277009 TCATGGGTGCACCGCCAA 62.277 61.111 29.08 15.06 44.64 4.52
2807 4468 3.069946 CATGGGTGCACCGCCAAT 61.070 61.111 29.08 16.62 44.64 3.16
2808 4469 3.069946 ATGGGTGCACCGCCAATG 61.070 61.111 29.08 0.00 44.64 2.82
2809 4470 3.582242 ATGGGTGCACCGCCAATGA 62.582 57.895 29.08 7.33 44.64 2.57
2810 4471 2.988684 GGGTGCACCGCCAATGAA 60.989 61.111 29.08 0.00 35.42 2.57
2811 4472 2.350458 GGGTGCACCGCCAATGAAT 61.350 57.895 29.08 0.00 35.42 2.57
2812 4473 1.153784 GGTGCACCGCCAATGAATG 60.154 57.895 22.49 0.00 33.65 2.67
2813 4474 1.806758 GTGCACCGCCAATGAATGC 60.807 57.895 5.22 0.00 36.81 3.56
2820 4481 3.932459 GCCAATGAATGCGAGGAAG 57.068 52.632 0.00 0.00 0.00 3.46
2821 4482 1.382522 GCCAATGAATGCGAGGAAGA 58.617 50.000 0.00 0.00 0.00 2.87
2822 4483 1.745087 GCCAATGAATGCGAGGAAGAA 59.255 47.619 0.00 0.00 0.00 2.52
2823 4484 2.223433 GCCAATGAATGCGAGGAAGAAG 60.223 50.000 0.00 0.00 0.00 2.85
2824 4485 3.273434 CCAATGAATGCGAGGAAGAAGA 58.727 45.455 0.00 0.00 0.00 2.87
2825 4486 3.881688 CCAATGAATGCGAGGAAGAAGAT 59.118 43.478 0.00 0.00 0.00 2.40
2826 4487 4.261072 CCAATGAATGCGAGGAAGAAGATG 60.261 45.833 0.00 0.00 0.00 2.90
2827 4488 3.616956 TGAATGCGAGGAAGAAGATGT 57.383 42.857 0.00 0.00 0.00 3.06
2828 4489 3.942829 TGAATGCGAGGAAGAAGATGTT 58.057 40.909 0.00 0.00 0.00 2.71
2829 4490 3.686241 TGAATGCGAGGAAGAAGATGTTG 59.314 43.478 0.00 0.00 0.00 3.33
2830 4491 2.099141 TGCGAGGAAGAAGATGTTGG 57.901 50.000 0.00 0.00 0.00 3.77
2831 4492 0.729690 GCGAGGAAGAAGATGTTGGC 59.270 55.000 0.00 0.00 0.00 4.52
2832 4493 1.945819 GCGAGGAAGAAGATGTTGGCA 60.946 52.381 0.00 0.00 0.00 4.92
2833 4494 1.734465 CGAGGAAGAAGATGTTGGCAC 59.266 52.381 0.00 0.00 0.00 5.01
2834 4495 2.087646 GAGGAAGAAGATGTTGGCACC 58.912 52.381 0.00 0.00 0.00 5.01
2835 4496 1.177401 GGAAGAAGATGTTGGCACCC 58.823 55.000 0.00 0.00 0.00 4.61
2836 4497 1.272147 GGAAGAAGATGTTGGCACCCT 60.272 52.381 0.00 0.00 0.00 4.34
2837 4498 2.519013 GAAGAAGATGTTGGCACCCTT 58.481 47.619 0.00 0.00 0.00 3.95
2838 4499 1.915141 AGAAGATGTTGGCACCCTTG 58.085 50.000 0.00 0.00 0.00 3.61
2839 4500 1.425066 AGAAGATGTTGGCACCCTTGA 59.575 47.619 0.00 0.00 0.00 3.02
2840 4501 1.541588 GAAGATGTTGGCACCCTTGAC 59.458 52.381 0.00 0.00 0.00 3.18
2841 4502 0.773644 AGATGTTGGCACCCTTGACT 59.226 50.000 0.00 0.00 0.00 3.41
2842 4503 1.168714 GATGTTGGCACCCTTGACTC 58.831 55.000 0.00 0.00 0.00 3.36
2843 4504 0.773644 ATGTTGGCACCCTTGACTCT 59.226 50.000 0.00 0.00 0.00 3.24
2844 4505 0.550914 TGTTGGCACCCTTGACTCTT 59.449 50.000 0.00 0.00 0.00 2.85
2845 4506 1.064017 TGTTGGCACCCTTGACTCTTT 60.064 47.619 0.00 0.00 0.00 2.52
2846 4507 1.338020 GTTGGCACCCTTGACTCTTTG 59.662 52.381 0.00 0.00 0.00 2.77
2847 4508 0.843309 TGGCACCCTTGACTCTTTGA 59.157 50.000 0.00 0.00 0.00 2.69
2848 4509 1.202806 TGGCACCCTTGACTCTTTGAG 60.203 52.381 0.00 0.00 35.52 3.02
2849 4510 1.202818 GGCACCCTTGACTCTTTGAGT 60.203 52.381 0.00 0.00 46.42 3.41
2850 4511 1.876156 GCACCCTTGACTCTTTGAGTG 59.124 52.381 4.85 0.00 43.53 3.51
2851 4512 2.746472 GCACCCTTGACTCTTTGAGTGT 60.746 50.000 4.85 0.00 43.53 3.55
2852 4513 3.494398 GCACCCTTGACTCTTTGAGTGTA 60.494 47.826 4.85 0.00 43.53 2.90
2853 4514 4.703897 CACCCTTGACTCTTTGAGTGTAA 58.296 43.478 4.85 0.48 43.53 2.41
2854 4515 5.308825 CACCCTTGACTCTTTGAGTGTAAT 58.691 41.667 4.85 0.00 43.53 1.89
2855 4516 5.409826 CACCCTTGACTCTTTGAGTGTAATC 59.590 44.000 4.85 0.00 43.53 1.75
2856 4517 5.308237 ACCCTTGACTCTTTGAGTGTAATCT 59.692 40.000 4.85 0.00 43.53 2.40
2857 4518 6.183361 ACCCTTGACTCTTTGAGTGTAATCTT 60.183 38.462 4.85 0.00 43.53 2.40
2858 4519 7.016268 ACCCTTGACTCTTTGAGTGTAATCTTA 59.984 37.037 4.85 0.00 43.53 2.10
2859 4520 8.043710 CCCTTGACTCTTTGAGTGTAATCTTAT 58.956 37.037 4.85 0.00 43.53 1.73
2860 4521 9.442047 CCTTGACTCTTTGAGTGTAATCTTATT 57.558 33.333 4.85 0.00 43.53 1.40
2868 4529 9.897744 CTTTGAGTGTAATCTTATTTTTCTGCA 57.102 29.630 0.00 0.00 0.00 4.41
2870 4531 9.844790 TTGAGTGTAATCTTATTTTTCTGCATG 57.155 29.630 0.00 0.00 0.00 4.06
2871 4532 8.461222 TGAGTGTAATCTTATTTTTCTGCATGG 58.539 33.333 0.00 0.00 0.00 3.66
2872 4533 7.775120 AGTGTAATCTTATTTTTCTGCATGGG 58.225 34.615 0.00 0.00 0.00 4.00
2873 4534 7.397192 AGTGTAATCTTATTTTTCTGCATGGGT 59.603 33.333 0.00 0.00 0.00 4.51
2874 4535 7.489113 GTGTAATCTTATTTTTCTGCATGGGTG 59.511 37.037 0.00 0.00 0.00 4.61
2875 4536 6.610075 AATCTTATTTTTCTGCATGGGTGT 57.390 33.333 0.00 0.00 0.00 4.16
2876 4537 5.389859 TCTTATTTTTCTGCATGGGTGTG 57.610 39.130 0.00 0.00 0.00 3.82
2877 4538 4.832266 TCTTATTTTTCTGCATGGGTGTGT 59.168 37.500 0.00 0.00 0.00 3.72
2878 4539 5.304101 TCTTATTTTTCTGCATGGGTGTGTT 59.696 36.000 0.00 0.00 0.00 3.32
2879 4540 3.902881 TTTTTCTGCATGGGTGTGTTT 57.097 38.095 0.00 0.00 0.00 2.83
2880 4541 2.886862 TTTCTGCATGGGTGTGTTTG 57.113 45.000 0.00 0.00 0.00 2.93
2881 4542 1.774110 TTCTGCATGGGTGTGTTTGT 58.226 45.000 0.00 0.00 0.00 2.83
2882 4543 2.647683 TCTGCATGGGTGTGTTTGTA 57.352 45.000 0.00 0.00 0.00 2.41
2883 4544 2.937519 TCTGCATGGGTGTGTTTGTAA 58.062 42.857 0.00 0.00 0.00 2.41
2884 4545 2.884012 TCTGCATGGGTGTGTTTGTAAG 59.116 45.455 0.00 0.00 0.00 2.34
2885 4546 1.959985 TGCATGGGTGTGTTTGTAAGG 59.040 47.619 0.00 0.00 0.00 2.69
2886 4547 1.960689 GCATGGGTGTGTTTGTAAGGT 59.039 47.619 0.00 0.00 0.00 3.50
2887 4548 2.030274 GCATGGGTGTGTTTGTAAGGTC 60.030 50.000 0.00 0.00 0.00 3.85
2888 4549 2.351706 TGGGTGTGTTTGTAAGGTCC 57.648 50.000 0.00 0.00 0.00 4.46
2889 4550 1.847737 TGGGTGTGTTTGTAAGGTCCT 59.152 47.619 0.00 0.00 0.00 3.85
2890 4551 2.227194 GGGTGTGTTTGTAAGGTCCTG 58.773 52.381 0.00 0.00 0.00 3.86
2891 4552 2.422377 GGGTGTGTTTGTAAGGTCCTGT 60.422 50.000 0.00 0.00 0.00 4.00
2892 4553 2.616842 GGTGTGTTTGTAAGGTCCTGTG 59.383 50.000 0.00 0.00 0.00 3.66
2893 4554 3.537580 GTGTGTTTGTAAGGTCCTGTGA 58.462 45.455 0.00 0.00 0.00 3.58
2894 4555 3.942748 GTGTGTTTGTAAGGTCCTGTGAA 59.057 43.478 0.00 0.00 0.00 3.18
2895 4556 4.578928 GTGTGTTTGTAAGGTCCTGTGAAT 59.421 41.667 0.00 0.00 0.00 2.57
2896 4557 4.819630 TGTGTTTGTAAGGTCCTGTGAATC 59.180 41.667 0.00 0.00 0.00 2.52
2897 4558 5.063880 GTGTTTGTAAGGTCCTGTGAATCT 58.936 41.667 0.00 0.00 0.00 2.40
2898 4559 5.531287 GTGTTTGTAAGGTCCTGTGAATCTT 59.469 40.000 0.00 0.00 0.00 2.40
2899 4560 6.708949 GTGTTTGTAAGGTCCTGTGAATCTTA 59.291 38.462 0.00 0.00 0.00 2.10
2900 4561 7.227910 GTGTTTGTAAGGTCCTGTGAATCTTAA 59.772 37.037 0.00 0.00 0.00 1.85
2901 4562 7.942341 TGTTTGTAAGGTCCTGTGAATCTTAAT 59.058 33.333 0.00 0.00 0.00 1.40
2902 4563 9.444600 GTTTGTAAGGTCCTGTGAATCTTAATA 57.555 33.333 0.00 0.00 0.00 0.98
2903 4564 9.667107 TTTGTAAGGTCCTGTGAATCTTAATAG 57.333 33.333 0.00 0.00 0.00 1.73
2904 4565 8.375493 TGTAAGGTCCTGTGAATCTTAATAGT 57.625 34.615 0.00 0.00 0.00 2.12
2905 4566 9.483489 TGTAAGGTCCTGTGAATCTTAATAGTA 57.517 33.333 0.00 0.00 0.00 1.82
2921 4582 9.839185 TCTTAATAGTATATGACCTTAGCCCTT 57.161 33.333 0.00 0.00 0.00 3.95
2925 4586 5.855045 AGTATATGACCTTAGCCCTTTTCG 58.145 41.667 0.00 0.00 0.00 3.46
2926 4587 1.751437 ATGACCTTAGCCCTTTTCGC 58.249 50.000 0.00 0.00 0.00 4.70
2927 4588 0.398696 TGACCTTAGCCCTTTTCGCA 59.601 50.000 0.00 0.00 0.00 5.10
2928 4589 1.202830 TGACCTTAGCCCTTTTCGCAA 60.203 47.619 0.00 0.00 0.00 4.85
2929 4590 1.883926 GACCTTAGCCCTTTTCGCAAA 59.116 47.619 0.00 0.00 0.00 3.68
2930 4591 2.295070 GACCTTAGCCCTTTTCGCAAAA 59.705 45.455 0.00 0.00 0.00 2.44
2931 4592 2.035449 ACCTTAGCCCTTTTCGCAAAAC 59.965 45.455 0.00 0.00 0.00 2.43
2932 4593 2.035321 CCTTAGCCCTTTTCGCAAAACA 59.965 45.455 0.00 0.00 0.00 2.83
2933 4594 3.491792 CCTTAGCCCTTTTCGCAAAACAA 60.492 43.478 0.00 0.00 0.00 2.83
2934 4595 2.682155 AGCCCTTTTCGCAAAACAAA 57.318 40.000 0.00 0.00 0.00 2.83
2935 4596 2.979240 AGCCCTTTTCGCAAAACAAAA 58.021 38.095 0.00 0.00 0.00 2.44
2936 4597 2.675844 AGCCCTTTTCGCAAAACAAAAC 59.324 40.909 0.00 0.00 0.00 2.43
2937 4598 2.416893 GCCCTTTTCGCAAAACAAAACA 59.583 40.909 0.00 0.00 0.00 2.83
2938 4599 3.120165 GCCCTTTTCGCAAAACAAAACAA 60.120 39.130 0.00 0.00 0.00 2.83
2939 4600 4.613850 GCCCTTTTCGCAAAACAAAACAAA 60.614 37.500 0.00 0.00 0.00 2.83
2940 4601 5.452777 CCCTTTTCGCAAAACAAAACAAAA 58.547 33.333 0.00 0.00 0.00 2.44
2941 4602 5.567154 CCCTTTTCGCAAAACAAAACAAAAG 59.433 36.000 0.00 0.00 31.86 2.27
2942 4603 6.139435 CCTTTTCGCAAAACAAAACAAAAGT 58.861 32.000 0.00 0.00 30.66 2.66
2943 4604 6.086110 CCTTTTCGCAAAACAAAACAAAAGTG 59.914 34.615 0.00 0.00 30.66 3.16
2944 4605 4.653806 TCGCAAAACAAAACAAAAGTGG 57.346 36.364 0.00 0.00 0.00 4.00
2945 4606 3.120511 TCGCAAAACAAAACAAAAGTGGC 60.121 39.130 0.00 0.00 0.00 5.01
2946 4607 3.497118 GCAAAACAAAACAAAAGTGGCC 58.503 40.909 0.00 0.00 0.00 5.36
2947 4608 3.057946 GCAAAACAAAACAAAAGTGGCCA 60.058 39.130 0.00 0.00 0.00 5.36
2948 4609 4.380339 GCAAAACAAAACAAAAGTGGCCAT 60.380 37.500 9.72 0.00 0.00 4.40
2949 4610 5.163713 GCAAAACAAAACAAAAGTGGCCATA 60.164 36.000 9.72 0.00 0.00 2.74
2950 4611 6.623767 GCAAAACAAAACAAAAGTGGCCATAA 60.624 34.615 9.72 0.00 0.00 1.90
2951 4612 7.479150 CAAAACAAAACAAAAGTGGCCATAAT 58.521 30.769 9.72 0.00 0.00 1.28
2952 4613 8.616076 CAAAACAAAACAAAAGTGGCCATAATA 58.384 29.630 9.72 0.00 0.00 0.98
2953 4614 8.738645 AAACAAAACAAAAGTGGCCATAATAA 57.261 26.923 9.72 0.00 0.00 1.40
2954 4615 8.916628 AACAAAACAAAAGTGGCCATAATAAT 57.083 26.923 9.72 0.00 0.00 1.28
2955 4616 8.916628 ACAAAACAAAAGTGGCCATAATAATT 57.083 26.923 9.72 0.00 0.00 1.40
2956 4617 9.348476 ACAAAACAAAAGTGGCCATAATAATTT 57.652 25.926 9.72 3.81 0.00 1.82
2959 4620 7.376435 ACAAAAGTGGCCATAATAATTTTGC 57.624 32.000 23.89 6.38 38.88 3.68
2960 4621 7.167535 ACAAAAGTGGCCATAATAATTTTGCT 58.832 30.769 23.89 15.52 38.88 3.91
2961 4622 8.317679 ACAAAAGTGGCCATAATAATTTTGCTA 58.682 29.630 23.89 0.00 38.88 3.49
2962 4623 8.603181 CAAAAGTGGCCATAATAATTTTGCTAC 58.397 33.333 9.72 0.00 31.75 3.58
2963 4624 6.405278 AGTGGCCATAATAATTTTGCTACC 57.595 37.500 9.72 0.00 31.53 3.18
2964 4625 6.136155 AGTGGCCATAATAATTTTGCTACCT 58.864 36.000 9.72 0.00 31.53 3.08
2965 4626 6.040842 AGTGGCCATAATAATTTTGCTACCTG 59.959 38.462 9.72 0.00 31.53 4.00
2966 4627 6.040391 GTGGCCATAATAATTTTGCTACCTGA 59.960 38.462 9.72 0.00 0.00 3.86
2967 4628 6.265196 TGGCCATAATAATTTTGCTACCTGAG 59.735 38.462 0.00 0.00 0.00 3.35
2968 4629 6.265422 GGCCATAATAATTTTGCTACCTGAGT 59.735 38.462 0.00 0.00 0.00 3.41
2969 4630 7.447238 GGCCATAATAATTTTGCTACCTGAGTA 59.553 37.037 0.00 0.00 0.00 2.59
2970 4631 8.846211 GCCATAATAATTTTGCTACCTGAGTAA 58.154 33.333 0.00 0.00 0.00 2.24
2980 4641 9.528489 TTTTGCTACCTGAGTAATTAAAATCCT 57.472 29.630 0.00 0.00 28.99 3.24
2981 4642 8.732746 TTGCTACCTGAGTAATTAAAATCCTC 57.267 34.615 0.00 0.00 0.00 3.71
2982 4643 7.857456 TGCTACCTGAGTAATTAAAATCCTCA 58.143 34.615 3.52 3.52 0.00 3.86
2983 4644 7.987458 TGCTACCTGAGTAATTAAAATCCTCAG 59.013 37.037 17.23 17.23 45.50 3.35
2984 4645 7.988028 GCTACCTGAGTAATTAAAATCCTCAGT 59.012 37.037 20.27 14.12 44.82 3.41
2985 4646 9.892130 CTACCTGAGTAATTAAAATCCTCAGTT 57.108 33.333 20.27 13.51 44.82 3.16
2986 4647 8.794335 ACCTGAGTAATTAAAATCCTCAGTTC 57.206 34.615 20.27 0.00 44.82 3.01
2987 4648 8.383175 ACCTGAGTAATTAAAATCCTCAGTTCA 58.617 33.333 20.27 0.00 44.82 3.18
2988 4649 9.231297 CCTGAGTAATTAAAATCCTCAGTTCAA 57.769 33.333 20.27 0.00 44.82 2.69
3003 4664 9.231297 TCCTCAGTTCAAAATATCGAATTTTCT 57.769 29.630 12.41 7.16 0.00 2.52
3004 4665 9.846248 CCTCAGTTCAAAATATCGAATTTTCTT 57.154 29.630 12.41 0.00 0.00 2.52
3016 4677 5.981174 TCGAATTTTCTTTTACACCAGTCG 58.019 37.500 0.00 0.00 0.00 4.18
3017 4678 5.754406 TCGAATTTTCTTTTACACCAGTCGA 59.246 36.000 0.00 0.00 0.00 4.20
3018 4679 6.425721 TCGAATTTTCTTTTACACCAGTCGAT 59.574 34.615 0.00 0.00 0.00 3.59
3019 4680 7.041644 TCGAATTTTCTTTTACACCAGTCGATT 60.042 33.333 0.00 0.00 0.00 3.34
3020 4681 7.589954 CGAATTTTCTTTTACACCAGTCGATTT 59.410 33.333 0.00 0.00 0.00 2.17
3021 4682 9.244799 GAATTTTCTTTTACACCAGTCGATTTT 57.755 29.630 0.00 0.00 0.00 1.82
3022 4683 9.594478 AATTTTCTTTTACACCAGTCGATTTTT 57.406 25.926 0.00 0.00 0.00 1.94
3070 4731 9.547753 TGAGGTAATGAACTCAAATAGCTATTC 57.452 33.333 19.11 7.43 40.51 1.75
3071 4732 9.547753 GAGGTAATGAACTCAAATAGCTATTCA 57.452 33.333 19.11 12.76 33.33 2.57
3086 4747 9.732130 AATAGCTATTCATTATTTCCAGAGGAC 57.268 33.333 13.37 0.00 0.00 3.85
3087 4748 7.141758 AGCTATTCATTATTTCCAGAGGACA 57.858 36.000 0.00 0.00 0.00 4.02
3088 4749 7.577303 AGCTATTCATTATTTCCAGAGGACAA 58.423 34.615 0.00 0.00 0.00 3.18
3089 4750 8.055181 AGCTATTCATTATTTCCAGAGGACAAA 58.945 33.333 0.00 0.00 0.00 2.83
3090 4751 8.686334 GCTATTCATTATTTCCAGAGGACAAAA 58.314 33.333 0.00 0.00 0.00 2.44
3112 4773 2.801077 AAAACTATCCGTCCCTTGGG 57.199 50.000 0.00 0.00 0.00 4.12
3113 4774 0.255033 AAACTATCCGTCCCTTGGGC 59.745 55.000 0.00 0.00 0.00 5.36
3114 4775 0.620700 AACTATCCGTCCCTTGGGCT 60.621 55.000 0.00 0.00 0.00 5.19
3115 4776 0.620700 ACTATCCGTCCCTTGGGCTT 60.621 55.000 0.00 0.00 0.00 4.35
3116 4777 0.546598 CTATCCGTCCCTTGGGCTTT 59.453 55.000 0.00 0.00 0.00 3.51
3117 4778 0.996583 TATCCGTCCCTTGGGCTTTT 59.003 50.000 0.00 0.00 0.00 2.27
3118 4779 0.114364 ATCCGTCCCTTGGGCTTTTT 59.886 50.000 0.00 0.00 0.00 1.94
3119 4780 0.825840 TCCGTCCCTTGGGCTTTTTG 60.826 55.000 0.00 0.00 0.00 2.44
3120 4781 1.112916 CCGTCCCTTGGGCTTTTTGT 61.113 55.000 0.00 0.00 0.00 2.83
3121 4782 1.611519 CGTCCCTTGGGCTTTTTGTA 58.388 50.000 0.00 0.00 0.00 2.41
3122 4783 1.268625 CGTCCCTTGGGCTTTTTGTAC 59.731 52.381 0.00 0.00 0.00 2.90
3123 4784 2.594131 GTCCCTTGGGCTTTTTGTACT 58.406 47.619 0.00 0.00 0.00 2.73
3124 4785 2.296190 GTCCCTTGGGCTTTTTGTACTG 59.704 50.000 0.00 0.00 0.00 2.74
3125 4786 2.091555 TCCCTTGGGCTTTTTGTACTGT 60.092 45.455 0.00 0.00 0.00 3.55
3126 4787 2.035832 CCCTTGGGCTTTTTGTACTGTG 59.964 50.000 0.00 0.00 0.00 3.66
3127 4788 2.693074 CCTTGGGCTTTTTGTACTGTGT 59.307 45.455 0.00 0.00 0.00 3.72
3128 4789 3.490761 CCTTGGGCTTTTTGTACTGTGTG 60.491 47.826 0.00 0.00 0.00 3.82
3129 4790 1.407258 TGGGCTTTTTGTACTGTGTGC 59.593 47.619 0.00 0.00 0.00 4.57
3130 4791 1.407258 GGGCTTTTTGTACTGTGTGCA 59.593 47.619 0.00 0.00 0.00 4.57
3131 4792 2.159170 GGGCTTTTTGTACTGTGTGCAA 60.159 45.455 0.00 0.00 36.45 4.08
3132 4793 3.492482 GGGCTTTTTGTACTGTGTGCAAT 60.492 43.478 2.44 0.00 37.89 3.56
3133 4794 4.119136 GGCTTTTTGTACTGTGTGCAATT 58.881 39.130 2.44 0.00 37.89 2.32
3134 4795 4.570369 GGCTTTTTGTACTGTGTGCAATTT 59.430 37.500 2.44 0.00 37.89 1.82
3135 4796 5.276820 GGCTTTTTGTACTGTGTGCAATTTC 60.277 40.000 2.44 0.00 37.89 2.17
3136 4797 5.554324 GCTTTTTGTACTGTGTGCAATTTCG 60.554 40.000 2.44 0.00 37.89 3.46
3137 4798 4.884458 TTTGTACTGTGTGCAATTTCGA 57.116 36.364 2.44 0.00 37.89 3.71
3138 4799 4.466567 TTGTACTGTGTGCAATTTCGAG 57.533 40.909 0.00 0.00 33.61 4.04
3139 4800 2.805671 TGTACTGTGTGCAATTTCGAGG 59.194 45.455 0.00 0.00 0.00 4.63
3140 4801 1.238439 ACTGTGTGCAATTTCGAGGG 58.762 50.000 0.00 0.00 0.00 4.30
3141 4802 0.109597 CTGTGTGCAATTTCGAGGGC 60.110 55.000 0.00 0.00 0.00 5.19
3142 4803 0.537143 TGTGTGCAATTTCGAGGGCT 60.537 50.000 0.00 0.00 0.00 5.19
3143 4804 1.271108 TGTGTGCAATTTCGAGGGCTA 60.271 47.619 0.00 0.00 0.00 3.93
3144 4805 2.017049 GTGTGCAATTTCGAGGGCTAT 58.983 47.619 0.00 0.00 0.00 2.97
3145 4806 2.016318 TGTGCAATTTCGAGGGCTATG 58.984 47.619 0.00 0.00 0.00 2.23
3146 4807 2.288666 GTGCAATTTCGAGGGCTATGA 58.711 47.619 0.00 0.00 0.00 2.15
3147 4808 2.880890 GTGCAATTTCGAGGGCTATGAT 59.119 45.455 0.00 0.00 0.00 2.45
3148 4809 2.880268 TGCAATTTCGAGGGCTATGATG 59.120 45.455 0.00 0.00 0.00 3.07
3149 4810 3.141398 GCAATTTCGAGGGCTATGATGA 58.859 45.455 0.00 0.00 0.00 2.92
3150 4811 3.755378 GCAATTTCGAGGGCTATGATGAT 59.245 43.478 0.00 0.00 0.00 2.45
3151 4812 4.379186 GCAATTTCGAGGGCTATGATGATG 60.379 45.833 0.00 0.00 0.00 3.07
3152 4813 2.462456 TTCGAGGGCTATGATGATGC 57.538 50.000 0.00 0.00 0.00 3.91
3153 4814 1.341080 TCGAGGGCTATGATGATGCA 58.659 50.000 0.00 0.00 0.00 3.96
3154 4815 1.904537 TCGAGGGCTATGATGATGCAT 59.095 47.619 0.00 0.00 0.00 3.96
3155 4816 2.007608 CGAGGGCTATGATGATGCATG 58.992 52.381 2.46 0.00 0.00 4.06
3156 4817 2.354403 CGAGGGCTATGATGATGCATGA 60.354 50.000 2.46 0.00 0.00 3.07
3157 4818 3.271729 GAGGGCTATGATGATGCATGAG 58.728 50.000 2.46 0.00 0.00 2.90
3158 4819 2.026169 AGGGCTATGATGATGCATGAGG 60.026 50.000 2.46 0.00 0.00 3.86
3159 4820 1.743958 GGCTATGATGATGCATGAGGC 59.256 52.381 2.46 0.02 45.13 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 0.030235 CGGTGTTAGGCGATCATCGA 59.970 55.000 12.38 0.00 43.74 3.59
139 141 4.996758 CCATATGCCGATGTATGAGTTTGA 59.003 41.667 0.00 0.00 31.48 2.69
182 184 0.946700 TGCGACCCACACGTATGTTG 60.947 55.000 0.00 0.00 36.72 3.33
210 212 1.847798 AACTGCTGGCGATGGGGTTA 61.848 55.000 0.00 0.00 0.00 2.85
216 218 0.656259 CATGAGAACTGCTGGCGATG 59.344 55.000 0.00 0.00 0.00 3.84
236 238 8.661352 AAATGGTGAAATTTGAACCAACTTAG 57.339 30.769 20.66 0.00 46.59 2.18
286 1672 5.123820 TCACCAAACAAGCATATAAGCTCAC 59.876 40.000 2.41 0.00 45.89 3.51
319 1709 9.315525 GGGAGAAGTTGTATTTAGTGTAAGATC 57.684 37.037 0.00 0.00 0.00 2.75
331 1721 9.990868 ATAAAAATACCAGGGAGAAGTTGTATT 57.009 29.630 0.00 0.00 32.03 1.89
375 1924 6.204688 TGACAATGTATCTTCTCACCAAACAC 59.795 38.462 0.00 0.00 0.00 3.32
433 1983 1.882623 GACAAGGAGAGGTGCAAAAGG 59.117 52.381 0.00 0.00 0.00 3.11
482 2034 7.870509 AAAGTAGATTGAAGAAGCATGCATA 57.129 32.000 21.98 0.00 0.00 3.14
609 2195 5.356751 AGACAAGACAAATGCACACAAGTAA 59.643 36.000 0.00 0.00 0.00 2.24
669 2256 2.355756 ACATCGATGTATTTGGCTGCAC 59.644 45.455 29.05 0.00 39.68 4.57
744 2340 6.358974 TCAAGATATCGATGGATGCCTTTA 57.641 37.500 8.54 0.00 34.00 1.85
872 2475 1.494960 AAGCCACCTTTTCCAAGCAA 58.505 45.000 0.00 0.00 0.00 3.91
1038 2653 9.466497 TCATTTCTAAAATGCTCTATTCCTTGT 57.534 29.630 7.39 0.00 0.00 3.16
1135 2750 8.986929 AAGTATTCATAAATAAGCAGCCTCTT 57.013 30.769 0.00 0.00 0.00 2.85
1211 2826 4.771590 TTGGTCAGCACAAGAATCATTC 57.228 40.909 0.00 0.00 0.00 2.67
1252 2867 9.607285 ACAAATTTTGTAAAGCTATGTTAGTCG 57.393 29.630 12.98 0.00 43.27 4.18
1267 2882 7.487484 TCTGCATGACAAGAACAAATTTTGTA 58.513 30.769 14.81 0.00 44.59 2.41
1425 3040 4.521146 GTCTCATCTCCACATCCAACAAT 58.479 43.478 0.00 0.00 0.00 2.71
1490 3105 5.123820 TGTCTAGTATTTGCTTGTTGATGGC 59.876 40.000 0.00 0.00 0.00 4.40
1494 3109 7.228507 ACAACATGTCTAGTATTTGCTTGTTGA 59.771 33.333 20.42 0.00 42.53 3.18
1537 3152 9.057089 GCATTATTAGTTTAGTGCAGGAGTTAT 57.943 33.333 0.00 0.00 35.54 1.89
1598 3224 1.136695 TGCTTCACAACTGCCCAAAAG 59.863 47.619 0.00 0.00 0.00 2.27
1608 3238 5.276820 GCCACTGTTTAAATTGCTTCACAAC 60.277 40.000 0.00 0.00 42.27 3.32
1616 3246 6.632834 CGACATATAGCCACTGTTTAAATTGC 59.367 38.462 0.00 0.00 0.00 3.56
1672 3302 2.558795 AGCTATACGCATCGGACTTGAT 59.441 45.455 0.00 0.00 42.61 2.57
1705 3335 2.375174 ACCCACTTACAATCTCCAGCAA 59.625 45.455 0.00 0.00 0.00 3.91
1707 3337 2.789409 ACCCACTTACAATCTCCAGC 57.211 50.000 0.00 0.00 0.00 4.85
1737 3367 3.497763 CCATTATAAGGTGATGGGGCGAA 60.498 47.826 0.00 0.00 39.64 4.70
1779 3409 4.183539 GCATTTAGCAGCACTTACGTAG 57.816 45.455 0.00 0.00 44.79 3.51
1794 3424 8.726068 TCGAGTGATACAAATTTGAAGCATTTA 58.274 29.630 24.64 5.12 0.00 1.40
1876 3518 4.221482 CCCTTGATTTTCCTTCTTTCAGGG 59.779 45.833 0.00 0.00 34.37 4.45
1914 3556 3.072944 GTGAACAGCTCTTCAGAAGCAT 58.927 45.455 4.48 0.00 30.63 3.79
1962 3604 0.820871 TGGACACACAAAAGGCCAAC 59.179 50.000 5.01 0.00 0.00 3.77
1990 3632 1.633432 ACATTAGTGGCCTGGCACTTA 59.367 47.619 28.02 20.82 33.26 2.24
2068 3710 2.948115 TCCTCCCGACGGAATATAACA 58.052 47.619 17.49 0.00 37.86 2.41
2105 3747 2.450609 TAACAGAGTTCTCCGTTGCC 57.549 50.000 10.52 0.00 0.00 4.52
2135 3777 1.826385 GCCCTGCTAATGTTGTCAGT 58.174 50.000 0.00 0.00 0.00 3.41
2367 4024 3.682696 TGATCTCAAGCAGCAAGAACAT 58.317 40.909 0.00 0.00 0.00 2.71
2392 4049 3.424703 CAAAACAGTCATGGATCCCAGT 58.575 45.455 9.90 0.00 36.75 4.00
2407 4064 1.025113 TTGACACGTCCGGCAAAACA 61.025 50.000 0.00 0.00 0.00 2.83
2489 4146 6.653526 AGGATTCAACACAATCATTGAACA 57.346 33.333 3.79 0.00 45.09 3.18
2513 4170 3.470645 AAGCCAGTTAGTTTCGACACT 57.529 42.857 9.53 9.53 0.00 3.55
2607 4267 4.548494 TCTCACGAAGCGTTTTATACACA 58.452 39.130 0.00 0.00 38.32 3.72
2613 4273 3.249080 CCCTTTTCTCACGAAGCGTTTTA 59.751 43.478 0.00 0.00 38.32 1.52
2618 4278 1.227999 TGCCCTTTTCTCACGAAGCG 61.228 55.000 0.00 0.00 0.00 4.68
2661 4322 4.785453 CAGGAGACGCTTGCCCCC 62.785 72.222 0.00 0.00 0.00 5.40
2662 4323 4.785453 CCAGGAGACGCTTGCCCC 62.785 72.222 0.00 0.00 0.00 5.80
2663 4324 3.959991 GACCAGGAGACGCTTGCCC 62.960 68.421 0.00 0.00 0.00 5.36
2664 4325 2.435059 GACCAGGAGACGCTTGCC 60.435 66.667 0.00 0.00 0.00 4.52
2665 4326 1.739562 CAGACCAGGAGACGCTTGC 60.740 63.158 0.00 0.00 0.00 4.01
2666 4327 0.888619 TACAGACCAGGAGACGCTTG 59.111 55.000 0.00 0.00 0.00 4.01
2667 4328 1.751924 GATACAGACCAGGAGACGCTT 59.248 52.381 0.00 0.00 0.00 4.68
2668 4329 1.394618 GATACAGACCAGGAGACGCT 58.605 55.000 0.00 0.00 0.00 5.07
2669 4330 0.029567 CGATACAGACCAGGAGACGC 59.970 60.000 0.00 0.00 0.00 5.19
2670 4331 1.664873 TCGATACAGACCAGGAGACG 58.335 55.000 0.00 0.00 0.00 4.18
2671 4332 3.003897 GTCATCGATACAGACCAGGAGAC 59.996 52.174 0.00 0.00 0.00 3.36
2672 4333 3.117851 AGTCATCGATACAGACCAGGAGA 60.118 47.826 9.96 0.00 32.82 3.71
2673 4334 3.218453 AGTCATCGATACAGACCAGGAG 58.782 50.000 9.96 0.00 32.82 3.69
2674 4335 3.298686 AGTCATCGATACAGACCAGGA 57.701 47.619 9.96 0.00 32.82 3.86
2675 4336 4.392921 AAAGTCATCGATACAGACCAGG 57.607 45.455 9.96 0.00 32.82 4.45
2676 4337 4.500837 CGAAAAGTCATCGATACAGACCAG 59.499 45.833 9.96 0.00 42.76 4.00
2677 4338 4.157105 TCGAAAAGTCATCGATACAGACCA 59.843 41.667 9.96 0.00 43.76 4.02
2678 4339 4.669318 TCGAAAAGTCATCGATACAGACC 58.331 43.478 9.96 0.00 43.76 3.85
2686 4347 2.743636 AGCCTTCGAAAAGTCATCGA 57.256 45.000 0.00 0.00 46.64 3.59
2687 4348 3.512680 AGTAGCCTTCGAAAAGTCATCG 58.487 45.455 0.00 0.00 41.53 3.84
2688 4349 5.457650 GAAGTAGCCTTCGAAAAGTCATC 57.542 43.478 0.00 0.00 37.92 2.92
2699 4360 7.422399 CATGTAGAAGACTAGAAGTAGCCTTC 58.578 42.308 0.00 1.44 42.96 3.46
2700 4361 6.183360 GCATGTAGAAGACTAGAAGTAGCCTT 60.183 42.308 0.00 0.00 32.06 4.35
2701 4362 5.300792 GCATGTAGAAGACTAGAAGTAGCCT 59.699 44.000 0.00 0.00 0.00 4.58
2702 4363 5.300792 AGCATGTAGAAGACTAGAAGTAGCC 59.699 44.000 0.00 0.00 0.00 3.93
2703 4364 6.385649 AGCATGTAGAAGACTAGAAGTAGC 57.614 41.667 0.00 0.00 0.00 3.58
2704 4365 6.770785 AGGAGCATGTAGAAGACTAGAAGTAG 59.229 42.308 0.00 0.00 0.00 2.57
2705 4366 6.544197 CAGGAGCATGTAGAAGACTAGAAGTA 59.456 42.308 0.00 0.00 0.00 2.24
2706 4367 5.359576 CAGGAGCATGTAGAAGACTAGAAGT 59.640 44.000 0.00 0.00 0.00 3.01
2707 4368 5.592282 TCAGGAGCATGTAGAAGACTAGAAG 59.408 44.000 0.00 0.00 0.00 2.85
2708 4369 5.510430 TCAGGAGCATGTAGAAGACTAGAA 58.490 41.667 0.00 0.00 0.00 2.10
2709 4370 5.117406 TCAGGAGCATGTAGAAGACTAGA 57.883 43.478 0.00 0.00 0.00 2.43
2710 4371 4.887071 ACTCAGGAGCATGTAGAAGACTAG 59.113 45.833 0.00 0.00 0.00 2.57
2711 4372 4.861196 ACTCAGGAGCATGTAGAAGACTA 58.139 43.478 0.00 0.00 0.00 2.59
2712 4373 3.707316 ACTCAGGAGCATGTAGAAGACT 58.293 45.455 0.00 0.00 0.00 3.24
2713 4374 4.464069 AACTCAGGAGCATGTAGAAGAC 57.536 45.455 0.00 0.00 0.00 3.01
2714 4375 4.380973 CGAAACTCAGGAGCATGTAGAAGA 60.381 45.833 0.00 0.00 0.00 2.87
2715 4376 3.862267 CGAAACTCAGGAGCATGTAGAAG 59.138 47.826 0.00 0.00 0.00 2.85
2716 4377 3.509967 TCGAAACTCAGGAGCATGTAGAA 59.490 43.478 0.00 0.00 0.00 2.10
2717 4378 3.089284 TCGAAACTCAGGAGCATGTAGA 58.911 45.455 0.00 0.00 0.00 2.59
2718 4379 3.510388 TCGAAACTCAGGAGCATGTAG 57.490 47.619 0.00 0.00 0.00 2.74
2719 4380 3.953712 TTCGAAACTCAGGAGCATGTA 57.046 42.857 0.00 0.00 0.00 2.29
2720 4381 2.839486 TTCGAAACTCAGGAGCATGT 57.161 45.000 0.00 0.00 0.00 3.21
2721 4382 4.023707 ACTTTTTCGAAACTCAGGAGCATG 60.024 41.667 10.79 0.00 0.00 4.06
2722 4383 4.137543 ACTTTTTCGAAACTCAGGAGCAT 58.862 39.130 10.79 0.00 0.00 3.79
2723 4384 3.541632 ACTTTTTCGAAACTCAGGAGCA 58.458 40.909 10.79 0.00 0.00 4.26
2724 4385 4.553756 AACTTTTTCGAAACTCAGGAGC 57.446 40.909 10.79 0.00 0.00 4.70
2725 4386 4.735338 GCAAACTTTTTCGAAACTCAGGAG 59.265 41.667 10.79 4.83 0.00 3.69
2726 4387 4.156922 TGCAAACTTTTTCGAAACTCAGGA 59.843 37.500 10.79 0.00 0.00 3.86
2727 4388 4.420168 TGCAAACTTTTTCGAAACTCAGG 58.580 39.130 10.79 0.00 0.00 3.86
2728 4389 5.108630 CGATGCAAACTTTTTCGAAACTCAG 60.109 40.000 10.79 9.47 31.74 3.35
2729 4390 4.732923 CGATGCAAACTTTTTCGAAACTCA 59.267 37.500 10.79 0.00 31.74 3.41
2730 4391 4.146443 CCGATGCAAACTTTTTCGAAACTC 59.854 41.667 10.79 0.00 31.74 3.01
2731 4392 4.041723 CCGATGCAAACTTTTTCGAAACT 58.958 39.130 10.79 0.00 31.74 2.66
2732 4393 3.361627 GCCGATGCAAACTTTTTCGAAAC 60.362 43.478 10.79 0.00 37.47 2.78
2733 4394 2.792116 GCCGATGCAAACTTTTTCGAAA 59.208 40.909 6.47 6.47 37.47 3.46
2734 4395 2.223595 TGCCGATGCAAACTTTTTCGAA 60.224 40.909 5.25 0.00 46.66 3.71
2735 4396 1.335182 TGCCGATGCAAACTTTTTCGA 59.665 42.857 5.25 0.00 46.66 3.71
2736 4397 1.764851 TGCCGATGCAAACTTTTTCG 58.235 45.000 0.00 0.00 46.66 3.46
2747 4408 2.025156 CATTCGCCTTGCCGATGC 59.975 61.111 0.00 0.00 37.06 3.91
2748 4409 2.025156 GCATTCGCCTTGCCGATG 59.975 61.111 0.00 0.00 37.06 3.84
2758 4419 4.445699 CCACCTCTAGGCATTCGC 57.554 61.111 0.00 0.00 39.32 4.70
2765 4426 0.835941 AGCTTGATGCCACCTCTAGG 59.164 55.000 0.00 0.00 44.23 3.02
2766 4427 3.661944 CATAGCTTGATGCCACCTCTAG 58.338 50.000 0.00 0.00 44.23 2.43
2767 4428 2.224378 GCATAGCTTGATGCCACCTCTA 60.224 50.000 9.91 0.00 45.41 2.43
2768 4429 1.476471 GCATAGCTTGATGCCACCTCT 60.476 52.381 9.91 0.00 45.41 3.69
2769 4430 0.950116 GCATAGCTTGATGCCACCTC 59.050 55.000 9.91 0.00 45.41 3.85
2770 4431 3.106738 GCATAGCTTGATGCCACCT 57.893 52.632 9.91 0.00 45.41 4.00
2776 4437 2.552743 CACCCATGAGCATAGCTTGATG 59.447 50.000 0.00 0.00 39.88 3.07
2777 4438 2.860009 CACCCATGAGCATAGCTTGAT 58.140 47.619 0.00 0.00 39.88 2.57
2778 4439 1.748244 GCACCCATGAGCATAGCTTGA 60.748 52.381 0.00 0.00 39.88 3.02
2779 4440 0.666913 GCACCCATGAGCATAGCTTG 59.333 55.000 0.00 0.00 39.88 4.01
2780 4441 0.256752 TGCACCCATGAGCATAGCTT 59.743 50.000 0.00 0.00 39.88 3.74
2781 4442 0.465097 GTGCACCCATGAGCATAGCT 60.465 55.000 5.22 0.00 43.44 3.32
2782 4443 1.450531 GGTGCACCCATGAGCATAGC 61.451 60.000 26.31 0.00 43.44 2.97
2783 4444 1.162181 CGGTGCACCCATGAGCATAG 61.162 60.000 29.95 8.00 43.44 2.23
2784 4445 1.153188 CGGTGCACCCATGAGCATA 60.153 57.895 29.95 0.00 43.44 3.14
2785 4446 2.438975 CGGTGCACCCATGAGCAT 60.439 61.111 29.95 0.00 43.44 3.79
2788 4449 4.720902 TGGCGGTGCACCCATGAG 62.721 66.667 29.95 16.43 0.00 2.90
2789 4450 3.582242 ATTGGCGGTGCACCCATGA 62.582 57.895 29.95 14.20 0.00 3.07
2790 4451 3.069946 ATTGGCGGTGCACCCATG 61.070 61.111 29.95 17.20 0.00 3.66
2791 4452 3.069946 CATTGGCGGTGCACCCAT 61.070 61.111 29.95 13.85 0.00 4.00
2792 4453 3.799286 TTCATTGGCGGTGCACCCA 62.799 57.895 29.95 19.91 0.00 4.51
2793 4454 2.350458 ATTCATTGGCGGTGCACCC 61.350 57.895 29.95 21.28 0.00 4.61
2794 4455 1.153784 CATTCATTGGCGGTGCACC 60.154 57.895 26.78 26.78 0.00 5.01
2795 4456 1.806758 GCATTCATTGGCGGTGCAC 60.807 57.895 8.80 8.80 35.93 4.57
2796 4457 2.572812 GCATTCATTGGCGGTGCA 59.427 55.556 0.00 0.00 35.93 4.57
2802 4463 1.382522 TCTTCCTCGCATTCATTGGC 58.617 50.000 0.00 0.00 0.00 4.52
2803 4464 3.273434 TCTTCTTCCTCGCATTCATTGG 58.727 45.455 0.00 0.00 0.00 3.16
2804 4465 4.334759 ACATCTTCTTCCTCGCATTCATTG 59.665 41.667 0.00 0.00 0.00 2.82
2805 4466 4.521146 ACATCTTCTTCCTCGCATTCATT 58.479 39.130 0.00 0.00 0.00 2.57
2806 4467 4.148128 ACATCTTCTTCCTCGCATTCAT 57.852 40.909 0.00 0.00 0.00 2.57
2807 4468 3.616956 ACATCTTCTTCCTCGCATTCA 57.383 42.857 0.00 0.00 0.00 2.57
2808 4469 3.064545 CCAACATCTTCTTCCTCGCATTC 59.935 47.826 0.00 0.00 0.00 2.67
2809 4470 3.012518 CCAACATCTTCTTCCTCGCATT 58.987 45.455 0.00 0.00 0.00 3.56
2810 4471 2.636830 CCAACATCTTCTTCCTCGCAT 58.363 47.619 0.00 0.00 0.00 4.73
2811 4472 1.945819 GCCAACATCTTCTTCCTCGCA 60.946 52.381 0.00 0.00 0.00 5.10
2812 4473 0.729690 GCCAACATCTTCTTCCTCGC 59.270 55.000 0.00 0.00 0.00 5.03
2813 4474 1.734465 GTGCCAACATCTTCTTCCTCG 59.266 52.381 0.00 0.00 0.00 4.63
2814 4475 2.087646 GGTGCCAACATCTTCTTCCTC 58.912 52.381 0.00 0.00 0.00 3.71
2815 4476 1.272147 GGGTGCCAACATCTTCTTCCT 60.272 52.381 0.00 0.00 0.00 3.36
2816 4477 1.177401 GGGTGCCAACATCTTCTTCC 58.823 55.000 0.00 0.00 0.00 3.46
2817 4478 2.206576 AGGGTGCCAACATCTTCTTC 57.793 50.000 0.00 0.00 0.00 2.87
2818 4479 2.158475 TCAAGGGTGCCAACATCTTCTT 60.158 45.455 0.00 0.00 0.00 2.52
2819 4480 1.425066 TCAAGGGTGCCAACATCTTCT 59.575 47.619 0.00 0.00 0.00 2.85
2820 4481 1.541588 GTCAAGGGTGCCAACATCTTC 59.458 52.381 0.00 0.00 0.00 2.87
2821 4482 1.145738 AGTCAAGGGTGCCAACATCTT 59.854 47.619 0.00 0.00 0.00 2.40
2822 4483 0.773644 AGTCAAGGGTGCCAACATCT 59.226 50.000 0.00 0.00 0.00 2.90
2823 4484 1.168714 GAGTCAAGGGTGCCAACATC 58.831 55.000 0.00 0.00 0.00 3.06
2824 4485 0.773644 AGAGTCAAGGGTGCCAACAT 59.226 50.000 0.00 0.00 0.00 2.71
2825 4486 0.550914 AAGAGTCAAGGGTGCCAACA 59.449 50.000 0.00 0.00 0.00 3.33
2826 4487 1.338020 CAAAGAGTCAAGGGTGCCAAC 59.662 52.381 0.00 0.00 0.00 3.77
2827 4488 1.214175 TCAAAGAGTCAAGGGTGCCAA 59.786 47.619 0.00 0.00 0.00 4.52
2828 4489 0.843309 TCAAAGAGTCAAGGGTGCCA 59.157 50.000 0.00 0.00 0.00 4.92
2829 4490 1.202818 ACTCAAAGAGTCAAGGGTGCC 60.203 52.381 0.00 0.00 38.71 5.01
2830 4491 1.876156 CACTCAAAGAGTCAAGGGTGC 59.124 52.381 0.00 0.00 41.37 5.01
2831 4492 3.199880 ACACTCAAAGAGTCAAGGGTG 57.800 47.619 7.66 7.66 41.37 4.61
2832 4493 5.308237 AGATTACACTCAAAGAGTCAAGGGT 59.692 40.000 0.00 0.00 41.37 4.34
2833 4494 5.799213 AGATTACACTCAAAGAGTCAAGGG 58.201 41.667 0.00 0.00 41.37 3.95
2834 4495 9.442047 AATAAGATTACACTCAAAGAGTCAAGG 57.558 33.333 0.00 0.00 41.37 3.61
2842 4503 9.897744 TGCAGAAAAATAAGATTACACTCAAAG 57.102 29.630 0.00 0.00 0.00 2.77
2844 4505 9.844790 CATGCAGAAAAATAAGATTACACTCAA 57.155 29.630 0.00 0.00 0.00 3.02
2845 4506 8.461222 CCATGCAGAAAAATAAGATTACACTCA 58.539 33.333 0.00 0.00 0.00 3.41
2846 4507 7.917505 CCCATGCAGAAAAATAAGATTACACTC 59.082 37.037 0.00 0.00 0.00 3.51
2847 4508 7.397192 ACCCATGCAGAAAAATAAGATTACACT 59.603 33.333 0.00 0.00 0.00 3.55
2848 4509 7.489113 CACCCATGCAGAAAAATAAGATTACAC 59.511 37.037 0.00 0.00 0.00 2.90
2849 4510 7.178274 ACACCCATGCAGAAAAATAAGATTACA 59.822 33.333 0.00 0.00 0.00 2.41
2850 4511 7.489113 CACACCCATGCAGAAAAATAAGATTAC 59.511 37.037 0.00 0.00 0.00 1.89
2851 4512 7.178274 ACACACCCATGCAGAAAAATAAGATTA 59.822 33.333 0.00 0.00 0.00 1.75
2852 4513 6.014327 ACACACCCATGCAGAAAAATAAGATT 60.014 34.615 0.00 0.00 0.00 2.40
2853 4514 5.481473 ACACACCCATGCAGAAAAATAAGAT 59.519 36.000 0.00 0.00 0.00 2.40
2854 4515 4.832266 ACACACCCATGCAGAAAAATAAGA 59.168 37.500 0.00 0.00 0.00 2.10
2855 4516 5.138125 ACACACCCATGCAGAAAAATAAG 57.862 39.130 0.00 0.00 0.00 1.73
2856 4517 5.543507 AACACACCCATGCAGAAAAATAA 57.456 34.783 0.00 0.00 0.00 1.40
2857 4518 5.163364 ACAAACACACCCATGCAGAAAAATA 60.163 36.000 0.00 0.00 0.00 1.40
2858 4519 4.128643 CAAACACACCCATGCAGAAAAAT 58.871 39.130 0.00 0.00 0.00 1.82
2859 4520 3.055530 ACAAACACACCCATGCAGAAAAA 60.056 39.130 0.00 0.00 0.00 1.94
2860 4521 2.499289 ACAAACACACCCATGCAGAAAA 59.501 40.909 0.00 0.00 0.00 2.29
2861 4522 2.106566 ACAAACACACCCATGCAGAAA 58.893 42.857 0.00 0.00 0.00 2.52
2862 4523 1.774110 ACAAACACACCCATGCAGAA 58.226 45.000 0.00 0.00 0.00 3.02
2863 4524 2.647683 TACAAACACACCCATGCAGA 57.352 45.000 0.00 0.00 0.00 4.26
2864 4525 2.030007 CCTTACAAACACACCCATGCAG 60.030 50.000 0.00 0.00 0.00 4.41
2865 4526 1.959985 CCTTACAAACACACCCATGCA 59.040 47.619 0.00 0.00 0.00 3.96
2866 4527 1.960689 ACCTTACAAACACACCCATGC 59.039 47.619 0.00 0.00 0.00 4.06
2867 4528 2.556622 GGACCTTACAAACACACCCATG 59.443 50.000 0.00 0.00 0.00 3.66
2868 4529 2.445525 AGGACCTTACAAACACACCCAT 59.554 45.455 0.00 0.00 0.00 4.00
2869 4530 1.847737 AGGACCTTACAAACACACCCA 59.152 47.619 0.00 0.00 0.00 4.51
2870 4531 2.227194 CAGGACCTTACAAACACACCC 58.773 52.381 0.00 0.00 0.00 4.61
2871 4532 2.616842 CACAGGACCTTACAAACACACC 59.383 50.000 0.00 0.00 0.00 4.16
2872 4533 3.537580 TCACAGGACCTTACAAACACAC 58.462 45.455 0.00 0.00 0.00 3.82
2873 4534 3.916359 TCACAGGACCTTACAAACACA 57.084 42.857 0.00 0.00 0.00 3.72
2874 4535 5.063880 AGATTCACAGGACCTTACAAACAC 58.936 41.667 0.00 0.00 0.00 3.32
2875 4536 5.304686 AGATTCACAGGACCTTACAAACA 57.695 39.130 0.00 0.00 0.00 2.83
2876 4537 7.739498 TTAAGATTCACAGGACCTTACAAAC 57.261 36.000 0.00 0.00 0.00 2.93
2877 4538 9.667107 CTATTAAGATTCACAGGACCTTACAAA 57.333 33.333 0.00 0.00 0.00 2.83
2878 4539 8.822805 ACTATTAAGATTCACAGGACCTTACAA 58.177 33.333 0.00 0.00 0.00 2.41
2879 4540 8.375493 ACTATTAAGATTCACAGGACCTTACA 57.625 34.615 0.00 0.00 0.00 2.41
2895 4556 9.839185 AAGGGCTAAGGTCATATACTATTAAGA 57.161 33.333 0.00 0.00 0.00 2.10
2899 4560 8.095169 CGAAAAGGGCTAAGGTCATATACTATT 58.905 37.037 0.00 0.00 0.00 1.73
2900 4561 7.612677 CGAAAAGGGCTAAGGTCATATACTAT 58.387 38.462 0.00 0.00 0.00 2.12
2901 4562 6.517864 GCGAAAAGGGCTAAGGTCATATACTA 60.518 42.308 0.00 0.00 0.00 1.82
2902 4563 5.742255 GCGAAAAGGGCTAAGGTCATATACT 60.742 44.000 0.00 0.00 0.00 2.12
2903 4564 4.451435 GCGAAAAGGGCTAAGGTCATATAC 59.549 45.833 0.00 0.00 0.00 1.47
2904 4565 4.101898 TGCGAAAAGGGCTAAGGTCATATA 59.898 41.667 0.00 0.00 0.00 0.86
2905 4566 3.118038 TGCGAAAAGGGCTAAGGTCATAT 60.118 43.478 0.00 0.00 0.00 1.78
2906 4567 2.237643 TGCGAAAAGGGCTAAGGTCATA 59.762 45.455 0.00 0.00 0.00 2.15
2907 4568 1.004277 TGCGAAAAGGGCTAAGGTCAT 59.996 47.619 0.00 0.00 0.00 3.06
2908 4569 0.398696 TGCGAAAAGGGCTAAGGTCA 59.601 50.000 0.00 0.00 0.00 4.02
2909 4570 1.530323 TTGCGAAAAGGGCTAAGGTC 58.470 50.000 0.00 0.00 0.00 3.85
2910 4571 1.989706 TTTGCGAAAAGGGCTAAGGT 58.010 45.000 0.00 0.00 0.00 3.50
2911 4572 2.035321 TGTTTTGCGAAAAGGGCTAAGG 59.965 45.455 0.00 0.00 0.00 2.69
2912 4573 3.363341 TGTTTTGCGAAAAGGGCTAAG 57.637 42.857 0.00 0.00 0.00 2.18
2913 4574 3.802948 TTGTTTTGCGAAAAGGGCTAA 57.197 38.095 0.00 0.00 0.00 3.09
2914 4575 3.802948 TTTGTTTTGCGAAAAGGGCTA 57.197 38.095 0.00 0.00 0.00 3.93
2915 4576 2.675844 GTTTTGTTTTGCGAAAAGGGCT 59.324 40.909 0.00 0.00 32.66 5.19
2916 4577 2.416893 TGTTTTGTTTTGCGAAAAGGGC 59.583 40.909 0.00 0.00 32.66 5.19
2917 4578 4.670227 TTGTTTTGTTTTGCGAAAAGGG 57.330 36.364 0.00 0.00 32.66 3.95
2918 4579 6.086110 CACTTTTGTTTTGTTTTGCGAAAAGG 59.914 34.615 0.00 0.00 34.64 3.11
2919 4580 6.086110 CCACTTTTGTTTTGTTTTGCGAAAAG 59.914 34.615 0.00 0.00 35.83 2.27
2920 4581 5.909610 CCACTTTTGTTTTGTTTTGCGAAAA 59.090 32.000 0.00 0.00 32.66 2.29
2921 4582 5.444122 CCACTTTTGTTTTGTTTTGCGAAA 58.556 33.333 0.00 0.00 0.00 3.46
2922 4583 4.611581 GCCACTTTTGTTTTGTTTTGCGAA 60.612 37.500 0.00 0.00 0.00 4.70
2923 4584 3.120511 GCCACTTTTGTTTTGTTTTGCGA 60.121 39.130 0.00 0.00 0.00 5.10
2924 4585 3.159785 GCCACTTTTGTTTTGTTTTGCG 58.840 40.909 0.00 0.00 0.00 4.85
2925 4586 3.057946 TGGCCACTTTTGTTTTGTTTTGC 60.058 39.130 0.00 0.00 0.00 3.68
2926 4587 4.756084 TGGCCACTTTTGTTTTGTTTTG 57.244 36.364 0.00 0.00 0.00 2.44
2927 4588 7.637631 ATTATGGCCACTTTTGTTTTGTTTT 57.362 28.000 8.16 0.00 0.00 2.43
2928 4589 8.738645 TTATTATGGCCACTTTTGTTTTGTTT 57.261 26.923 8.16 0.00 0.00 2.83
2929 4590 8.916628 ATTATTATGGCCACTTTTGTTTTGTT 57.083 26.923 8.16 0.00 0.00 2.83
2930 4591 8.916628 AATTATTATGGCCACTTTTGTTTTGT 57.083 26.923 8.16 0.00 0.00 2.83
2933 4594 8.296000 GCAAAATTATTATGGCCACTTTTGTTT 58.704 29.630 8.16 3.14 35.57 2.83
2934 4595 7.665145 AGCAAAATTATTATGGCCACTTTTGTT 59.335 29.630 8.16 12.26 35.57 2.83
2935 4596 7.167535 AGCAAAATTATTATGGCCACTTTTGT 58.832 30.769 8.16 0.00 35.57 2.83
2936 4597 7.614124 AGCAAAATTATTATGGCCACTTTTG 57.386 32.000 8.16 17.04 35.99 2.44
2937 4598 7.768582 GGTAGCAAAATTATTATGGCCACTTTT 59.231 33.333 8.16 4.92 0.00 2.27
2938 4599 7.125659 AGGTAGCAAAATTATTATGGCCACTTT 59.874 33.333 8.16 0.00 0.00 2.66
2939 4600 6.611236 AGGTAGCAAAATTATTATGGCCACTT 59.389 34.615 8.16 0.00 0.00 3.16
2940 4601 6.040842 CAGGTAGCAAAATTATTATGGCCACT 59.959 38.462 8.16 0.00 0.00 4.00
2941 4602 6.040391 TCAGGTAGCAAAATTATTATGGCCAC 59.960 38.462 8.16 0.00 0.00 5.01
2942 4603 6.132658 TCAGGTAGCAAAATTATTATGGCCA 58.867 36.000 8.56 8.56 0.00 5.36
2943 4604 6.265422 ACTCAGGTAGCAAAATTATTATGGCC 59.735 38.462 0.00 0.00 0.00 5.36
2944 4605 7.277174 ACTCAGGTAGCAAAATTATTATGGC 57.723 36.000 0.00 0.00 0.00 4.40
2954 4615 9.528489 AGGATTTTAATTACTCAGGTAGCAAAA 57.472 29.630 0.00 0.00 0.00 2.44
2955 4616 9.174166 GAGGATTTTAATTACTCAGGTAGCAAA 57.826 33.333 0.00 0.00 0.00 3.68
2956 4617 8.325787 TGAGGATTTTAATTACTCAGGTAGCAA 58.674 33.333 0.00 0.00 33.62 3.91
2957 4618 7.857456 TGAGGATTTTAATTACTCAGGTAGCA 58.143 34.615 0.00 0.00 33.62 3.49
2958 4619 8.371770 CTGAGGATTTTAATTACTCAGGTAGC 57.628 38.462 17.01 0.00 46.97 3.58
2977 4638 9.231297 AGAAAATTCGATATTTTGAACTGAGGA 57.769 29.630 17.29 0.00 32.03 3.71
2978 4639 9.846248 AAGAAAATTCGATATTTTGAACTGAGG 57.154 29.630 17.29 0.00 32.03 3.86
2990 4651 8.388103 CGACTGGTGTAAAAGAAAATTCGATAT 58.612 33.333 0.00 0.00 0.00 1.63
2991 4652 7.599621 TCGACTGGTGTAAAAGAAAATTCGATA 59.400 33.333 0.00 0.00 0.00 2.92
2992 4653 6.425721 TCGACTGGTGTAAAAGAAAATTCGAT 59.574 34.615 0.00 0.00 0.00 3.59
2993 4654 5.754406 TCGACTGGTGTAAAAGAAAATTCGA 59.246 36.000 0.00 0.00 0.00 3.71
2994 4655 5.981174 TCGACTGGTGTAAAAGAAAATTCG 58.019 37.500 0.00 0.00 0.00 3.34
2995 4656 8.797266 AAATCGACTGGTGTAAAAGAAAATTC 57.203 30.769 0.00 0.00 0.00 2.17
2996 4657 9.594478 AAAAATCGACTGGTGTAAAAGAAAATT 57.406 25.926 0.00 0.00 0.00 1.82
3040 4701 9.077885 AGCTATTTGAGTTCATTACCTCAAAAA 57.922 29.630 16.07 0.00 45.12 1.94
3041 4702 8.635765 AGCTATTTGAGTTCATTACCTCAAAA 57.364 30.769 16.07 7.47 45.12 2.44
3042 4703 9.905713 ATAGCTATTTGAGTTCATTACCTCAAA 57.094 29.630 14.88 14.88 45.74 2.69
3043 4704 9.905713 AATAGCTATTTGAGTTCATTACCTCAA 57.094 29.630 13.37 0.00 34.50 3.02
3044 4705 9.547753 GAATAGCTATTTGAGTTCATTACCTCA 57.452 33.333 19.77 0.00 0.00 3.86
3045 4706 9.547753 TGAATAGCTATTTGAGTTCATTACCTC 57.452 33.333 19.77 2.62 0.00 3.85
3060 4721 9.732130 GTCCTCTGGAAATAATGAATAGCTATT 57.268 33.333 18.92 18.92 31.38 1.73
3061 4722 8.884323 TGTCCTCTGGAAATAATGAATAGCTAT 58.116 33.333 0.00 0.00 31.38 2.97
3062 4723 8.262601 TGTCCTCTGGAAATAATGAATAGCTA 57.737 34.615 0.00 0.00 31.38 3.32
3063 4724 7.141758 TGTCCTCTGGAAATAATGAATAGCT 57.858 36.000 0.00 0.00 31.38 3.32
3064 4725 7.807977 TTGTCCTCTGGAAATAATGAATAGC 57.192 36.000 0.00 0.00 31.38 2.97
3092 4753 2.882643 GCCCAAGGGACGGATAGTTTTT 60.883 50.000 9.92 0.00 37.50 1.94
3093 4754 1.340697 GCCCAAGGGACGGATAGTTTT 60.341 52.381 9.92 0.00 37.50 2.43
3094 4755 0.255033 GCCCAAGGGACGGATAGTTT 59.745 55.000 9.92 0.00 37.50 2.66
3095 4756 0.620700 AGCCCAAGGGACGGATAGTT 60.621 55.000 9.92 0.00 37.50 2.24
3096 4757 0.620700 AAGCCCAAGGGACGGATAGT 60.621 55.000 9.92 0.00 37.50 2.12
3097 4758 0.546598 AAAGCCCAAGGGACGGATAG 59.453 55.000 9.92 0.00 37.50 2.08
3098 4759 0.996583 AAAAGCCCAAGGGACGGATA 59.003 50.000 9.92 0.00 37.50 2.59
3099 4760 0.114364 AAAAAGCCCAAGGGACGGAT 59.886 50.000 9.92 0.00 37.50 4.18
3100 4761 0.825840 CAAAAAGCCCAAGGGACGGA 60.826 55.000 9.92 0.00 37.50 4.69
3101 4762 1.112916 ACAAAAAGCCCAAGGGACGG 61.113 55.000 9.92 0.00 37.50 4.79
3102 4763 1.268625 GTACAAAAAGCCCAAGGGACG 59.731 52.381 9.92 0.00 37.50 4.79
3103 4764 2.296190 CAGTACAAAAAGCCCAAGGGAC 59.704 50.000 9.92 0.05 37.50 4.46
3104 4765 2.091555 ACAGTACAAAAAGCCCAAGGGA 60.092 45.455 9.92 0.00 37.50 4.20
3105 4766 2.035832 CACAGTACAAAAAGCCCAAGGG 59.964 50.000 0.00 0.00 38.57 3.95
3106 4767 2.693074 ACACAGTACAAAAAGCCCAAGG 59.307 45.455 0.00 0.00 0.00 3.61
3107 4768 3.705604 CACACAGTACAAAAAGCCCAAG 58.294 45.455 0.00 0.00 0.00 3.61
3108 4769 2.159170 GCACACAGTACAAAAAGCCCAA 60.159 45.455 0.00 0.00 0.00 4.12
3109 4770 1.407258 GCACACAGTACAAAAAGCCCA 59.593 47.619 0.00 0.00 0.00 5.36
3110 4771 1.407258 TGCACACAGTACAAAAAGCCC 59.593 47.619 0.00 0.00 0.00 5.19
3111 4772 2.861462 TGCACACAGTACAAAAAGCC 57.139 45.000 0.00 0.00 0.00 4.35
3112 4773 5.554324 CGAAATTGCACACAGTACAAAAAGC 60.554 40.000 0.00 0.00 0.00 3.51
3113 4774 5.741510 TCGAAATTGCACACAGTACAAAAAG 59.258 36.000 0.00 0.00 0.00 2.27
3114 4775 5.641709 TCGAAATTGCACACAGTACAAAAA 58.358 33.333 0.00 0.00 0.00 1.94
3115 4776 5.236655 TCGAAATTGCACACAGTACAAAA 57.763 34.783 0.00 0.00 0.00 2.44
3116 4777 4.260990 CCTCGAAATTGCACACAGTACAAA 60.261 41.667 0.00 0.00 0.00 2.83
3117 4778 3.249799 CCTCGAAATTGCACACAGTACAA 59.750 43.478 0.00 0.00 0.00 2.41
3118 4779 2.805671 CCTCGAAATTGCACACAGTACA 59.194 45.455 0.00 0.00 0.00 2.90
3119 4780 2.159627 CCCTCGAAATTGCACACAGTAC 59.840 50.000 0.00 0.00 0.00 2.73
3120 4781 2.422597 CCCTCGAAATTGCACACAGTA 58.577 47.619 0.00 0.00 0.00 2.74
3121 4782 1.238439 CCCTCGAAATTGCACACAGT 58.762 50.000 0.00 0.00 0.00 3.55
3122 4783 0.109597 GCCCTCGAAATTGCACACAG 60.110 55.000 0.00 0.00 0.00 3.66
3123 4784 0.537143 AGCCCTCGAAATTGCACACA 60.537 50.000 0.00 0.00 0.00 3.72
3124 4785 1.448985 TAGCCCTCGAAATTGCACAC 58.551 50.000 0.00 0.00 0.00 3.82
3125 4786 2.016318 CATAGCCCTCGAAATTGCACA 58.984 47.619 0.00 0.00 0.00 4.57
3126 4787 2.288666 TCATAGCCCTCGAAATTGCAC 58.711 47.619 0.00 0.00 0.00 4.57
3127 4788 2.708216 TCATAGCCCTCGAAATTGCA 57.292 45.000 0.00 0.00 0.00 4.08
3128 4789 3.141398 TCATCATAGCCCTCGAAATTGC 58.859 45.455 0.00 0.00 0.00 3.56
3129 4790 4.379186 GCATCATCATAGCCCTCGAAATTG 60.379 45.833 0.00 0.00 0.00 2.32
3130 4791 3.755378 GCATCATCATAGCCCTCGAAATT 59.245 43.478 0.00 0.00 0.00 1.82
3131 4792 3.244665 TGCATCATCATAGCCCTCGAAAT 60.245 43.478 0.00 0.00 0.00 2.17
3132 4793 2.104622 TGCATCATCATAGCCCTCGAAA 59.895 45.455 0.00 0.00 0.00 3.46
3133 4794 1.693606 TGCATCATCATAGCCCTCGAA 59.306 47.619 0.00 0.00 0.00 3.71
3134 4795 1.341080 TGCATCATCATAGCCCTCGA 58.659 50.000 0.00 0.00 0.00 4.04
3135 4796 2.007608 CATGCATCATCATAGCCCTCG 58.992 52.381 0.00 0.00 0.00 4.63
3136 4797 3.271729 CTCATGCATCATCATAGCCCTC 58.728 50.000 0.00 0.00 0.00 4.30
3137 4798 2.026169 CCTCATGCATCATCATAGCCCT 60.026 50.000 0.00 0.00 0.00 5.19
3138 4799 2.366533 CCTCATGCATCATCATAGCCC 58.633 52.381 0.00 0.00 0.00 5.19
3139 4800 1.743958 GCCTCATGCATCATCATAGCC 59.256 52.381 0.00 0.00 40.77 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.