Multiple sequence alignment - TraesCS2A01G484600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G484600 chr2A 100.000 2752 0 0 1 2752 719684972 719687723 0.000000e+00 5083.0
1 TraesCS2A01G484600 chr2A 83.273 831 88 25 1247 2055 719626358 719627159 0.000000e+00 717.0
2 TraesCS2A01G484600 chr2A 84.980 739 71 23 1277 1996 719566219 719566936 0.000000e+00 713.0
3 TraesCS2A01G484600 chr2A 86.370 675 47 18 632 1278 719565115 719565772 0.000000e+00 695.0
4 TraesCS2A01G484600 chr2A 86.800 250 20 7 1001 1250 719609748 719609984 1.620000e-67 267.0
5 TraesCS2A01G484600 chr2A 82.288 271 23 9 360 628 81106994 81107241 7.720000e-51 211.0
6 TraesCS2A01G484600 chr2D 85.045 1344 126 32 635 1952 585636025 585637319 0.000000e+00 1299.0
7 TraesCS2A01G484600 chr2D 84.040 1416 125 44 631 1996 585519447 585520811 0.000000e+00 1269.0
8 TraesCS2A01G484600 chr2D 84.106 755 82 19 2016 2740 585637513 585638259 0.000000e+00 695.0
9 TraesCS2A01G484600 chr2D 88.158 152 12 1 1801 1952 585637359 585637504 2.820000e-40 176.0
10 TraesCS2A01G484600 chr2B 86.838 1208 90 29 631 1808 706698766 706699934 0.000000e+00 1286.0
11 TraesCS2A01G484600 chr2B 82.946 1419 130 49 631 1996 706567384 706568743 0.000000e+00 1177.0
12 TraesCS2A01G484600 chr2B 79.482 965 129 39 1802 2741 706699991 706700911 3.010000e-174 621.0
13 TraesCS2A01G484600 chr2B 82.047 557 48 20 710 1228 770607529 770608071 7.040000e-116 427.0
14 TraesCS2A01G484600 chr2B 82.593 270 25 7 360 626 158435056 158434806 4.610000e-53 219.0
15 TraesCS2A01G484600 chr5A 98.329 359 6 0 1 359 19279603 19279245 5.000000e-177 630.0
16 TraesCS2A01G484600 chr5A 97.814 366 6 2 1 365 529273759 529273395 5.000000e-177 630.0
17 TraesCS2A01G484600 chr5A 98.324 358 6 0 1 358 529280754 529280397 1.800000e-176 628.0
18 TraesCS2A01G484600 chr5A 98.324 358 6 0 1 358 560677251 560677608 1.800000e-176 628.0
19 TraesCS2A01G484600 chr5A 98.324 358 6 0 1 358 639198700 639198343 1.800000e-176 628.0
20 TraesCS2A01G484600 chr3A 97.814 366 6 2 1 365 19931158 19931522 5.000000e-177 630.0
21 TraesCS2A01G484600 chr3A 83.708 178 20 7 360 536 726143674 726143505 2.840000e-35 159.0
22 TraesCS2A01G484600 chr4A 98.324 358 6 0 1 358 112743092 112742735 1.800000e-176 628.0
23 TraesCS2A01G484600 chr4A 98.324 358 6 0 1 358 614847820 614847463 1.800000e-176 628.0
24 TraesCS2A01G484600 chr7A 97.035 371 10 1 1 370 502671928 502671558 8.370000e-175 623.0
25 TraesCS2A01G484600 chr6B 81.692 650 76 20 923 1566 57458470 57457858 4.090000e-138 501.0
26 TraesCS2A01G484600 chr7B 82.406 557 46 17 710 1228 616817212 616816670 3.250000e-119 438.0
27 TraesCS2A01G484600 chr7B 87.624 202 21 3 360 561 126123164 126122967 5.930000e-57 231.0
28 TraesCS2A01G484600 chr7B 81.095 201 10 8 710 886 686969077 686969273 4.780000e-28 135.0
29 TraesCS2A01G484600 chr1B 82.226 557 47 18 710 1228 62244917 62245459 1.510000e-117 433.0
30 TraesCS2A01G484600 chr1B 91.525 59 3 2 2482 2539 468255681 468255624 2.270000e-11 80.5
31 TraesCS2A01G484600 chr1B 82.353 85 11 4 2457 2539 468255014 468254932 1.370000e-08 71.3
32 TraesCS2A01G484600 chr4B 82.332 549 46 19 710 1221 649654645 649654111 1.960000e-116 429.0
33 TraesCS2A01G484600 chr3B 94.052 269 16 0 358 626 578627720 578627988 2.550000e-110 409.0
34 TraesCS2A01G484600 chr6D 83.069 378 43 16 1331 1707 436404788 436404431 9.510000e-85 324.0
35 TraesCS2A01G484600 chr6D 76.821 302 40 9 1694 1988 30073444 30073722 2.860000e-30 143.0
36 TraesCS2A01G484600 chr6A 80.688 378 44 11 1331 1707 584508158 584507809 1.620000e-67 267.0
37 TraesCS2A01G484600 chr6A 79.896 383 47 13 1331 1711 584531225 584530871 1.260000e-63 254.0
38 TraesCS2A01G484600 chr6A 83.395 271 20 11 360 628 534673822 534673575 7.670000e-56 228.0
39 TraesCS2A01G484600 chrUn 81.319 273 24 15 360 628 48417325 48417574 2.160000e-46 196.0
40 TraesCS2A01G484600 chr1A 82.326 215 13 13 417 628 570128703 570128895 2.190000e-36 163.0
41 TraesCS2A01G484600 chr1D 87.143 70 4 5 2473 2539 347299083 347299016 1.060000e-09 75.0
42 TraesCS2A01G484600 chr1D 100.000 29 0 0 2488 2516 87837895 87837923 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G484600 chr2A 719684972 719687723 2751 False 5083.000000 5083 100.000000 1 2752 1 chr2A.!!$F4 2751
1 TraesCS2A01G484600 chr2A 719626358 719627159 801 False 717.000000 717 83.273000 1247 2055 1 chr2A.!!$F3 808
2 TraesCS2A01G484600 chr2A 719565115 719566936 1821 False 704.000000 713 85.675000 632 1996 2 chr2A.!!$F5 1364
3 TraesCS2A01G484600 chr2D 585519447 585520811 1364 False 1269.000000 1269 84.040000 631 1996 1 chr2D.!!$F1 1365
4 TraesCS2A01G484600 chr2D 585636025 585638259 2234 False 723.333333 1299 85.769667 635 2740 3 chr2D.!!$F2 2105
5 TraesCS2A01G484600 chr2B 706567384 706568743 1359 False 1177.000000 1177 82.946000 631 1996 1 chr2B.!!$F1 1365
6 TraesCS2A01G484600 chr2B 706698766 706700911 2145 False 953.500000 1286 83.160000 631 2741 2 chr2B.!!$F3 2110
7 TraesCS2A01G484600 chr2B 770607529 770608071 542 False 427.000000 427 82.047000 710 1228 1 chr2B.!!$F2 518
8 TraesCS2A01G484600 chr6B 57457858 57458470 612 True 501.000000 501 81.692000 923 1566 1 chr6B.!!$R1 643
9 TraesCS2A01G484600 chr7B 616816670 616817212 542 True 438.000000 438 82.406000 710 1228 1 chr7B.!!$R2 518
10 TraesCS2A01G484600 chr1B 62244917 62245459 542 False 433.000000 433 82.226000 710 1228 1 chr1B.!!$F1 518
11 TraesCS2A01G484600 chr4B 649654111 649654645 534 True 429.000000 429 82.332000 710 1221 1 chr4B.!!$R1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.773014 CATCCCCATGTCCATAGCCA 59.227 55.0 0.0 0.0 0.0 4.75 F
1013 1082 0.321564 GCCACCACACTCTGCACATA 60.322 55.0 0.0 0.0 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1048 1132 0.109532 ATCCGCTCGATCTCTCTGGA 59.890 55.0 0.0 0.0 0.0 3.86 R
2302 3166 0.320771 GAGCTCACACCGTCACCATT 60.321 55.0 9.4 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.227238 GTTGCACAATCTCATGGTCTAAG 57.773 43.478 0.00 0.00 0.00 2.18
23 24 3.877559 TGCACAATCTCATGGTCTAAGG 58.122 45.455 0.00 0.00 0.00 2.69
24 25 3.519107 TGCACAATCTCATGGTCTAAGGA 59.481 43.478 0.00 0.00 0.00 3.36
25 26 4.019411 TGCACAATCTCATGGTCTAAGGAA 60.019 41.667 0.00 0.00 0.00 3.36
26 27 4.943705 GCACAATCTCATGGTCTAAGGAAA 59.056 41.667 0.00 0.00 0.00 3.13
27 28 5.591877 GCACAATCTCATGGTCTAAGGAAAT 59.408 40.000 0.00 0.00 0.00 2.17
28 29 6.459298 GCACAATCTCATGGTCTAAGGAAATG 60.459 42.308 0.00 0.00 0.00 2.32
29 30 6.825213 CACAATCTCATGGTCTAAGGAAATGA 59.175 38.462 0.00 0.00 0.00 2.57
30 31 7.501559 CACAATCTCATGGTCTAAGGAAATGAT 59.498 37.037 0.00 0.00 31.04 2.45
31 32 8.717717 ACAATCTCATGGTCTAAGGAAATGATA 58.282 33.333 0.00 0.00 31.04 2.15
32 33 8.997323 CAATCTCATGGTCTAAGGAAATGATAC 58.003 37.037 0.00 0.00 31.04 2.24
33 34 7.921041 TCTCATGGTCTAAGGAAATGATACT 57.079 36.000 0.00 0.00 31.04 2.12
34 35 8.324191 TCTCATGGTCTAAGGAAATGATACTT 57.676 34.615 0.00 0.00 31.04 2.24
35 36 8.206867 TCTCATGGTCTAAGGAAATGATACTTG 58.793 37.037 0.00 0.00 31.04 3.16
36 37 8.089625 TCATGGTCTAAGGAAATGATACTTGA 57.910 34.615 0.00 0.00 0.00 3.02
37 38 7.987458 TCATGGTCTAAGGAAATGATACTTGAC 59.013 37.037 0.00 0.00 0.00 3.18
38 39 7.252612 TGGTCTAAGGAAATGATACTTGACA 57.747 36.000 0.00 0.00 30.76 3.58
39 40 7.861629 TGGTCTAAGGAAATGATACTTGACAT 58.138 34.615 0.00 0.00 30.76 3.06
40 41 8.328758 TGGTCTAAGGAAATGATACTTGACATT 58.671 33.333 0.00 0.00 38.18 2.71
41 42 8.831550 GGTCTAAGGAAATGATACTTGACATTC 58.168 37.037 0.00 0.00 35.99 2.67
42 43 9.383519 GTCTAAGGAAATGATACTTGACATTCA 57.616 33.333 0.00 0.00 35.99 2.57
43 44 9.605275 TCTAAGGAAATGATACTTGACATTCAG 57.395 33.333 0.00 0.00 35.99 3.02
44 45 9.605275 CTAAGGAAATGATACTTGACATTCAGA 57.395 33.333 0.00 0.00 35.99 3.27
45 46 8.868522 AAGGAAATGATACTTGACATTCAGAA 57.131 30.769 0.00 0.00 35.99 3.02
46 47 8.868522 AGGAAATGATACTTGACATTCAGAAA 57.131 30.769 0.00 0.00 35.99 2.52
47 48 9.300681 AGGAAATGATACTTGACATTCAGAAAA 57.699 29.630 0.00 0.00 35.99 2.29
48 49 9.565213 GGAAATGATACTTGACATTCAGAAAAG 57.435 33.333 0.00 0.00 35.99 2.27
49 50 8.976986 AAATGATACTTGACATTCAGAAAAGC 57.023 30.769 0.00 0.00 35.99 3.51
50 51 7.934855 ATGATACTTGACATTCAGAAAAGCT 57.065 32.000 0.00 0.00 0.00 3.74
51 52 9.453572 AATGATACTTGACATTCAGAAAAGCTA 57.546 29.630 0.00 0.00 32.26 3.32
52 53 8.256611 TGATACTTGACATTCAGAAAAGCTAC 57.743 34.615 0.00 0.00 0.00 3.58
53 54 7.877612 TGATACTTGACATTCAGAAAAGCTACA 59.122 33.333 0.00 0.00 0.00 2.74
54 55 6.942532 ACTTGACATTCAGAAAAGCTACAA 57.057 33.333 0.00 0.00 0.00 2.41
55 56 6.729187 ACTTGACATTCAGAAAAGCTACAAC 58.271 36.000 0.00 0.00 0.00 3.32
56 57 6.318648 ACTTGACATTCAGAAAAGCTACAACA 59.681 34.615 0.00 0.00 0.00 3.33
57 58 6.691754 TGACATTCAGAAAAGCTACAACAA 57.308 33.333 0.00 0.00 0.00 2.83
58 59 7.094508 TGACATTCAGAAAAGCTACAACAAA 57.905 32.000 0.00 0.00 0.00 2.83
59 60 6.972328 TGACATTCAGAAAAGCTACAACAAAC 59.028 34.615 0.00 0.00 0.00 2.93
60 61 5.971202 ACATTCAGAAAAGCTACAACAAACG 59.029 36.000 0.00 0.00 0.00 3.60
61 62 5.804692 TTCAGAAAAGCTACAACAAACGA 57.195 34.783 0.00 0.00 0.00 3.85
62 63 5.804692 TCAGAAAAGCTACAACAAACGAA 57.195 34.783 0.00 0.00 0.00 3.85
63 64 5.565695 TCAGAAAAGCTACAACAAACGAAC 58.434 37.500 0.00 0.00 0.00 3.95
64 65 5.353123 TCAGAAAAGCTACAACAAACGAACT 59.647 36.000 0.00 0.00 0.00 3.01
65 66 6.535865 TCAGAAAAGCTACAACAAACGAACTA 59.464 34.615 0.00 0.00 0.00 2.24
66 67 6.627671 CAGAAAAGCTACAACAAACGAACTAC 59.372 38.462 0.00 0.00 0.00 2.73
67 68 6.314400 AGAAAAGCTACAACAAACGAACTACA 59.686 34.615 0.00 0.00 0.00 2.74
68 69 5.399604 AAGCTACAACAAACGAACTACAC 57.600 39.130 0.00 0.00 0.00 2.90
69 70 3.488310 AGCTACAACAAACGAACTACACG 59.512 43.478 0.00 0.00 0.00 4.49
70 71 3.486841 GCTACAACAAACGAACTACACGA 59.513 43.478 0.00 0.00 34.70 4.35
71 72 4.149396 GCTACAACAAACGAACTACACGAT 59.851 41.667 0.00 0.00 34.70 3.73
72 73 4.703899 ACAACAAACGAACTACACGATC 57.296 40.909 0.00 0.00 34.70 3.69
73 74 4.365723 ACAACAAACGAACTACACGATCT 58.634 39.130 0.00 0.00 34.70 2.75
74 75 4.807304 ACAACAAACGAACTACACGATCTT 59.193 37.500 0.00 0.00 34.70 2.40
75 76 5.292589 ACAACAAACGAACTACACGATCTTT 59.707 36.000 0.00 0.00 34.70 2.52
76 77 5.324739 ACAAACGAACTACACGATCTTTG 57.675 39.130 0.00 0.00 34.70 2.77
77 78 4.807304 ACAAACGAACTACACGATCTTTGT 59.193 37.500 0.00 0.00 34.70 2.83
78 79 4.966850 AACGAACTACACGATCTTTGTG 57.033 40.909 7.01 2.92 42.99 3.33
79 80 2.729882 ACGAACTACACGATCTTTGTGC 59.270 45.455 7.01 0.00 41.03 4.57
80 81 2.987149 CGAACTACACGATCTTTGTGCT 59.013 45.455 7.01 0.00 41.03 4.40
81 82 4.163552 CGAACTACACGATCTTTGTGCTA 58.836 43.478 7.01 0.00 41.03 3.49
82 83 4.798907 CGAACTACACGATCTTTGTGCTAT 59.201 41.667 7.01 0.00 41.03 2.97
83 84 5.275927 CGAACTACACGATCTTTGTGCTATG 60.276 44.000 7.01 0.00 41.03 2.23
84 85 3.865745 ACTACACGATCTTTGTGCTATGC 59.134 43.478 7.01 0.00 41.03 3.14
85 86 2.977914 ACACGATCTTTGTGCTATGCT 58.022 42.857 0.00 0.00 41.03 3.79
86 87 3.338249 ACACGATCTTTGTGCTATGCTT 58.662 40.909 0.00 0.00 41.03 3.91
87 88 4.503910 ACACGATCTTTGTGCTATGCTTA 58.496 39.130 0.00 0.00 41.03 3.09
88 89 4.568359 ACACGATCTTTGTGCTATGCTTAG 59.432 41.667 2.28 2.28 41.03 2.18
89 90 4.025396 CACGATCTTTGTGCTATGCTTAGG 60.025 45.833 8.57 0.00 0.00 2.69
90 91 4.122776 CGATCTTTGTGCTATGCTTAGGT 58.877 43.478 8.57 0.00 0.00 3.08
91 92 4.572389 CGATCTTTGTGCTATGCTTAGGTT 59.428 41.667 8.57 0.00 0.00 3.50
92 93 5.065218 CGATCTTTGTGCTATGCTTAGGTTT 59.935 40.000 8.57 0.00 0.00 3.27
93 94 5.627499 TCTTTGTGCTATGCTTAGGTTTG 57.373 39.130 8.57 0.00 0.00 2.93
94 95 4.458989 TCTTTGTGCTATGCTTAGGTTTGG 59.541 41.667 8.57 0.00 0.00 3.28
95 96 2.722094 TGTGCTATGCTTAGGTTTGGG 58.278 47.619 8.57 0.00 0.00 4.12
96 97 2.041081 TGTGCTATGCTTAGGTTTGGGT 59.959 45.455 8.57 0.00 0.00 4.51
97 98 2.683362 GTGCTATGCTTAGGTTTGGGTC 59.317 50.000 8.57 0.00 0.00 4.46
98 99 2.576191 TGCTATGCTTAGGTTTGGGTCT 59.424 45.455 8.57 0.00 0.00 3.85
99 100 3.010138 TGCTATGCTTAGGTTTGGGTCTT 59.990 43.478 8.57 0.00 0.00 3.01
100 101 3.378427 GCTATGCTTAGGTTTGGGTCTTG 59.622 47.826 8.57 0.00 0.00 3.02
101 102 3.525800 ATGCTTAGGTTTGGGTCTTGT 57.474 42.857 0.00 0.00 0.00 3.16
102 103 2.858745 TGCTTAGGTTTGGGTCTTGTC 58.141 47.619 0.00 0.00 0.00 3.18
103 104 2.160205 GCTTAGGTTTGGGTCTTGTCC 58.840 52.381 0.00 0.00 0.00 4.02
104 105 2.488347 GCTTAGGTTTGGGTCTTGTCCA 60.488 50.000 0.00 0.00 0.00 4.02
105 106 3.814316 GCTTAGGTTTGGGTCTTGTCCAT 60.814 47.826 0.00 0.00 33.82 3.41
106 107 2.586648 AGGTTTGGGTCTTGTCCATC 57.413 50.000 0.00 0.00 33.82 3.51
107 108 1.780309 AGGTTTGGGTCTTGTCCATCA 59.220 47.619 0.00 0.00 33.82 3.07
108 109 1.886542 GGTTTGGGTCTTGTCCATCAC 59.113 52.381 0.00 0.00 33.82 3.06
109 110 2.582052 GTTTGGGTCTTGTCCATCACA 58.418 47.619 0.00 0.00 33.82 3.58
110 111 3.157087 GTTTGGGTCTTGTCCATCACAT 58.843 45.455 0.00 0.00 33.90 3.21
111 112 2.787473 TGGGTCTTGTCCATCACATC 57.213 50.000 0.00 0.00 33.90 3.06
112 113 1.984424 TGGGTCTTGTCCATCACATCA 59.016 47.619 0.00 0.00 33.90 3.07
113 114 2.577563 TGGGTCTTGTCCATCACATCAT 59.422 45.455 0.00 0.00 33.90 2.45
114 115 3.010472 TGGGTCTTGTCCATCACATCATT 59.990 43.478 0.00 0.00 33.90 2.57
115 116 3.629398 GGGTCTTGTCCATCACATCATTC 59.371 47.826 0.00 0.00 33.90 2.67
116 117 4.521146 GGTCTTGTCCATCACATCATTCT 58.479 43.478 0.00 0.00 33.90 2.40
117 118 4.574013 GGTCTTGTCCATCACATCATTCTC 59.426 45.833 0.00 0.00 33.90 2.87
118 119 4.574013 GTCTTGTCCATCACATCATTCTCC 59.426 45.833 0.00 0.00 33.90 3.71
119 120 4.472470 TCTTGTCCATCACATCATTCTCCT 59.528 41.667 0.00 0.00 33.90 3.69
120 121 5.662657 TCTTGTCCATCACATCATTCTCCTA 59.337 40.000 0.00 0.00 33.90 2.94
121 122 5.955961 TGTCCATCACATCATTCTCCTAA 57.044 39.130 0.00 0.00 0.00 2.69
122 123 6.505048 TGTCCATCACATCATTCTCCTAAT 57.495 37.500 0.00 0.00 0.00 1.73
123 124 6.293698 TGTCCATCACATCATTCTCCTAATG 58.706 40.000 0.00 0.00 0.00 1.90
124 125 6.100134 TGTCCATCACATCATTCTCCTAATGA 59.900 38.462 3.13 3.13 40.50 2.57
125 126 7.166851 GTCCATCACATCATTCTCCTAATGAT 58.833 38.462 7.28 7.28 45.40 2.45
134 135 6.218746 TCATTCTCCTAATGATGTGATCACG 58.781 40.000 20.54 4.64 43.01 4.35
135 136 5.598416 TTCTCCTAATGATGTGATCACGT 57.402 39.130 20.50 20.50 43.01 4.49
136 137 5.598416 TCTCCTAATGATGTGATCACGTT 57.402 39.130 21.24 11.20 43.01 3.99
137 138 6.709018 TCTCCTAATGATGTGATCACGTTA 57.291 37.500 21.24 17.66 43.01 3.18
138 139 7.290110 TCTCCTAATGATGTGATCACGTTAT 57.710 36.000 21.24 19.09 43.01 1.89
139 140 7.371159 TCTCCTAATGATGTGATCACGTTATC 58.629 38.462 21.68 18.04 43.01 1.75
140 141 7.014230 TCTCCTAATGATGTGATCACGTTATCA 59.986 37.037 22.48 22.48 43.01 2.15
141 142 7.496747 TCCTAATGATGTGATCACGTTATCAA 58.503 34.615 23.49 15.21 43.01 2.57
142 143 8.150296 TCCTAATGATGTGATCACGTTATCAAT 58.850 33.333 23.49 19.44 43.01 2.57
143 144 8.225777 CCTAATGATGTGATCACGTTATCAATG 58.774 37.037 23.49 17.35 43.01 2.82
144 145 7.790823 AATGATGTGATCACGTTATCAATGA 57.209 32.000 23.49 6.57 43.01 2.57
145 146 6.588348 TGATGTGATCACGTTATCAATGAC 57.412 37.500 21.24 6.37 37.61 3.06
146 147 6.105333 TGATGTGATCACGTTATCAATGACA 58.895 36.000 21.24 8.32 37.61 3.58
147 148 6.762661 TGATGTGATCACGTTATCAATGACAT 59.237 34.615 21.24 12.33 37.61 3.06
148 149 6.588348 TGTGATCACGTTATCAATGACATC 57.412 37.500 20.54 1.32 37.61 3.06
149 150 5.523552 TGTGATCACGTTATCAATGACATCC 59.476 40.000 20.54 0.65 37.61 3.51
150 151 5.050091 GTGATCACGTTATCAATGACATCCC 60.050 44.000 13.75 0.00 37.61 3.85
151 152 3.804036 TCACGTTATCAATGACATCCCC 58.196 45.455 0.00 0.00 0.00 4.81
152 153 3.198853 TCACGTTATCAATGACATCCCCA 59.801 43.478 0.00 0.00 0.00 4.96
153 154 4.136796 CACGTTATCAATGACATCCCCAT 58.863 43.478 0.00 0.00 0.00 4.00
154 155 4.023792 CACGTTATCAATGACATCCCCATG 60.024 45.833 0.00 0.00 35.92 3.66
155 156 4.136796 CGTTATCAATGACATCCCCATGT 58.863 43.478 0.00 0.00 46.64 3.21
163 164 0.773644 ACATCCCCATGTCCATAGCC 59.226 55.000 0.00 0.00 39.15 3.93
164 165 0.773014 CATCCCCATGTCCATAGCCA 59.227 55.000 0.00 0.00 0.00 4.75
165 166 1.070604 ATCCCCATGTCCATAGCCAG 58.929 55.000 0.00 0.00 0.00 4.85
166 167 1.061905 TCCCCATGTCCATAGCCAGG 61.062 60.000 0.00 0.00 0.00 4.45
167 168 1.061905 CCCCATGTCCATAGCCAGGA 61.062 60.000 0.00 0.00 0.00 3.86
168 169 0.846015 CCCATGTCCATAGCCAGGAA 59.154 55.000 0.00 0.00 36.80 3.36
169 170 1.215173 CCCATGTCCATAGCCAGGAAA 59.785 52.381 0.00 0.00 36.80 3.13
170 171 2.301346 CCATGTCCATAGCCAGGAAAC 58.699 52.381 0.00 0.00 36.80 2.78
171 172 2.301346 CATGTCCATAGCCAGGAAACC 58.699 52.381 0.00 0.00 36.80 3.27
172 173 1.367346 TGTCCATAGCCAGGAAACCA 58.633 50.000 0.00 0.00 36.80 3.67
173 174 1.922447 TGTCCATAGCCAGGAAACCAT 59.078 47.619 0.00 0.00 36.80 3.55
174 175 2.301346 GTCCATAGCCAGGAAACCATG 58.699 52.381 0.00 0.00 36.80 3.66
175 176 2.092429 GTCCATAGCCAGGAAACCATGA 60.092 50.000 0.00 0.00 36.80 3.07
176 177 2.092429 TCCATAGCCAGGAAACCATGAC 60.092 50.000 0.00 0.00 30.71 3.06
177 178 2.092212 CCATAGCCAGGAAACCATGACT 60.092 50.000 0.00 0.00 0.00 3.41
178 179 3.136443 CCATAGCCAGGAAACCATGACTA 59.864 47.826 0.00 0.00 0.00 2.59
179 180 4.202503 CCATAGCCAGGAAACCATGACTAT 60.203 45.833 0.00 0.00 0.00 2.12
180 181 3.567478 AGCCAGGAAACCATGACTATC 57.433 47.619 0.00 0.00 0.00 2.08
181 182 3.118531 AGCCAGGAAACCATGACTATCT 58.881 45.455 0.00 0.00 0.00 1.98
182 183 3.118112 AGCCAGGAAACCATGACTATCTG 60.118 47.826 0.00 0.00 0.00 2.90
183 184 3.370953 GCCAGGAAACCATGACTATCTGT 60.371 47.826 0.00 0.00 0.00 3.41
184 185 4.848357 CCAGGAAACCATGACTATCTGTT 58.152 43.478 0.00 0.00 0.00 3.16
185 186 4.637534 CCAGGAAACCATGACTATCTGTTG 59.362 45.833 0.00 0.00 0.00 3.33
186 187 5.491070 CAGGAAACCATGACTATCTGTTGA 58.509 41.667 0.00 0.00 0.00 3.18
187 188 6.118170 CAGGAAACCATGACTATCTGTTGAT 58.882 40.000 0.00 0.00 36.74 2.57
188 189 6.259608 CAGGAAACCATGACTATCTGTTGATC 59.740 42.308 0.00 0.00 34.32 2.92
189 190 6.070021 AGGAAACCATGACTATCTGTTGATCA 60.070 38.462 0.00 0.00 34.32 2.92
190 191 6.599244 GGAAACCATGACTATCTGTTGATCAA 59.401 38.462 3.38 3.38 34.32 2.57
191 192 6.992063 AACCATGACTATCTGTTGATCAAC 57.008 37.500 28.10 28.10 41.50 3.18
192 193 5.111989 ACCATGACTATCTGTTGATCAACG 58.888 41.667 28.55 23.04 43.94 4.10
193 194 5.105351 ACCATGACTATCTGTTGATCAACGA 60.105 40.000 28.55 26.46 43.94 3.85
194 195 5.461407 CCATGACTATCTGTTGATCAACGAG 59.539 44.000 28.55 24.84 43.94 4.18
195 196 4.424626 TGACTATCTGTTGATCAACGAGC 58.575 43.478 28.55 18.56 43.94 5.03
196 197 4.158579 TGACTATCTGTTGATCAACGAGCT 59.841 41.667 28.55 20.51 43.94 4.09
197 198 5.357032 TGACTATCTGTTGATCAACGAGCTA 59.643 40.000 28.55 20.52 43.94 3.32
198 199 5.826586 ACTATCTGTTGATCAACGAGCTAG 58.173 41.667 28.55 27.18 43.94 3.42
199 200 4.727507 ATCTGTTGATCAACGAGCTAGT 57.272 40.909 28.55 13.33 43.94 2.57
200 201 4.098055 TCTGTTGATCAACGAGCTAGTC 57.902 45.455 28.55 6.98 43.94 2.59
201 202 3.506067 TCTGTTGATCAACGAGCTAGTCA 59.494 43.478 28.55 10.88 43.94 3.41
202 203 4.022329 TCTGTTGATCAACGAGCTAGTCAA 60.022 41.667 28.55 10.18 43.94 3.18
203 204 3.987868 TGTTGATCAACGAGCTAGTCAAC 59.012 43.478 28.55 16.99 43.94 3.18
204 205 4.238514 GTTGATCAACGAGCTAGTCAACT 58.761 43.478 22.09 0.00 41.13 3.16
205 206 5.048294 TGTTGATCAACGAGCTAGTCAACTA 60.048 40.000 28.55 7.59 43.38 2.24
206 207 5.236655 TGATCAACGAGCTAGTCAACTAG 57.763 43.478 11.99 11.99 46.63 2.57
207 208 4.941873 TGATCAACGAGCTAGTCAACTAGA 59.058 41.667 19.03 0.00 46.80 2.43
208 209 4.948608 TCAACGAGCTAGTCAACTAGAG 57.051 45.455 19.03 11.89 46.80 2.43
209 210 3.690139 TCAACGAGCTAGTCAACTAGAGG 59.310 47.826 19.03 10.05 46.80 3.69
210 211 2.018515 ACGAGCTAGTCAACTAGAGGC 58.981 52.381 19.03 6.58 46.80 4.70
211 212 2.294074 CGAGCTAGTCAACTAGAGGCT 58.706 52.381 19.03 10.84 46.80 4.58
212 213 2.289547 CGAGCTAGTCAACTAGAGGCTC 59.710 54.545 19.03 16.73 46.80 4.70
213 214 3.283751 GAGCTAGTCAACTAGAGGCTCA 58.716 50.000 18.26 1.80 46.80 4.26
214 215 3.020984 AGCTAGTCAACTAGAGGCTCAC 58.979 50.000 18.26 4.72 46.80 3.51
215 216 3.020984 GCTAGTCAACTAGAGGCTCACT 58.979 50.000 18.26 12.32 46.80 3.41
216 217 4.080243 AGCTAGTCAACTAGAGGCTCACTA 60.080 45.833 18.26 12.80 46.80 2.74
217 218 4.274950 GCTAGTCAACTAGAGGCTCACTAG 59.725 50.000 23.14 23.14 46.80 2.57
218 219 4.577988 AGTCAACTAGAGGCTCACTAGA 57.422 45.455 18.26 4.99 39.48 2.43
219 220 4.523083 AGTCAACTAGAGGCTCACTAGAG 58.477 47.826 18.26 7.92 44.96 2.43
220 221 4.226394 AGTCAACTAGAGGCTCACTAGAGA 59.774 45.833 18.26 10.84 44.98 3.10
221 222 8.376028 CTAGTCAACTAGAGGCTCACTAGAGAC 61.376 48.148 23.10 21.47 46.80 3.36
231 232 5.269505 GCTCACTAGAGACACATTATGGT 57.730 43.478 0.00 0.00 44.98 3.55
232 233 5.285651 GCTCACTAGAGACACATTATGGTC 58.714 45.833 0.00 1.77 44.98 4.02
233 234 5.068460 GCTCACTAGAGACACATTATGGTCT 59.932 44.000 13.44 13.44 46.51 3.85
234 235 6.263392 GCTCACTAGAGACACATTATGGTCTA 59.737 42.308 13.51 6.18 44.03 2.59
235 236 7.040062 GCTCACTAGAGACACATTATGGTCTAT 60.040 40.741 13.51 13.13 44.03 1.98
236 237 8.171164 TCACTAGAGACACATTATGGTCTATG 57.829 38.462 15.82 11.89 44.03 2.23
237 238 7.780271 TCACTAGAGACACATTATGGTCTATGT 59.220 37.037 15.82 11.83 44.03 2.29
238 239 9.067986 CACTAGAGACACATTATGGTCTATGTA 57.932 37.037 15.82 8.91 44.03 2.29
239 240 9.815306 ACTAGAGACACATTATGGTCTATGTAT 57.185 33.333 15.82 1.82 44.03 2.29
242 243 9.147732 AGAGACACATTATGGTCTATGTATTCA 57.852 33.333 13.51 0.00 44.03 2.57
243 244 9.197694 GAGACACATTATGGTCTATGTATTCAC 57.802 37.037 13.51 0.00 44.03 3.18
244 245 8.704668 AGACACATTATGGTCTATGTATTCACA 58.295 33.333 12.39 0.00 42.30 3.58
245 246 8.662781 ACACATTATGGTCTATGTATTCACAC 57.337 34.615 0.00 0.00 37.54 3.82
246 247 8.264347 ACACATTATGGTCTATGTATTCACACA 58.736 33.333 0.00 0.00 37.54 3.72
247 248 9.276590 CACATTATGGTCTATGTATTCACACAT 57.723 33.333 0.00 0.00 41.88 3.21
248 249 9.276590 ACATTATGGTCTATGTATTCACACATG 57.723 33.333 0.00 0.00 39.46 3.21
249 250 9.276590 CATTATGGTCTATGTATTCACACATGT 57.723 33.333 0.00 0.00 39.46 3.21
254 255 9.758651 TGGTCTATGTATTCACACATGTATTAC 57.241 33.333 0.00 0.00 39.46 1.89
255 256 8.912658 GGTCTATGTATTCACACATGTATTACG 58.087 37.037 0.00 0.00 39.46 3.18
256 257 9.673454 GTCTATGTATTCACACATGTATTACGA 57.327 33.333 0.00 0.00 39.46 3.43
261 262 8.822855 TGTATTCACACATGTATTACGATTTCC 58.177 33.333 0.00 0.00 0.00 3.13
262 263 5.959652 TCACACATGTATTACGATTTCCG 57.040 39.130 0.00 0.00 45.44 4.30
263 264 4.806775 TCACACATGTATTACGATTTCCGG 59.193 41.667 0.00 0.00 43.93 5.14
264 265 4.806775 CACACATGTATTACGATTTCCGGA 59.193 41.667 0.00 0.00 43.93 5.14
265 266 5.465390 CACACATGTATTACGATTTCCGGAT 59.535 40.000 4.15 0.00 43.93 4.18
266 267 6.643360 CACACATGTATTACGATTTCCGGATA 59.357 38.462 4.15 0.00 43.93 2.59
267 268 7.170151 CACACATGTATTACGATTTCCGGATAA 59.830 37.037 4.15 0.00 43.93 1.75
268 269 7.876068 ACACATGTATTACGATTTCCGGATAAT 59.124 33.333 4.15 8.77 43.93 1.28
269 270 9.361315 CACATGTATTACGATTTCCGGATAATA 57.639 33.333 4.15 7.68 43.93 0.98
270 271 9.362539 ACATGTATTACGATTTCCGGATAATAC 57.637 33.333 25.06 25.06 43.93 1.89
271 272 9.361315 CATGTATTACGATTTCCGGATAATACA 57.639 33.333 30.94 30.94 45.69 2.29
272 273 9.932207 ATGTATTACGATTTCCGGATAATACAA 57.068 29.630 31.72 22.32 45.29 2.41
273 274 9.932207 TGTATTACGATTTCCGGATAATACAAT 57.068 29.630 28.86 17.11 42.76 2.71
279 280 9.095065 ACGATTTCCGGATAATACAATTATAGC 57.905 33.333 4.15 0.00 43.93 2.97
280 281 9.093970 CGATTTCCGGATAATACAATTATAGCA 57.906 33.333 4.15 0.00 33.91 3.49
283 284 9.952030 TTTCCGGATAATACAATTATAGCATGA 57.048 29.630 4.15 0.00 0.00 3.07
284 285 9.952030 TTCCGGATAATACAATTATAGCATGAA 57.048 29.630 4.15 0.00 0.00 2.57
345 346 9.866655 AATCATTTTATTATTGTCTCTAGGGCA 57.133 29.630 0.00 0.00 0.00 5.36
352 353 9.959721 TTATTATTGTCTCTAGGGCATATTTCC 57.040 33.333 0.00 0.00 0.00 3.13
353 354 5.912149 ATTGTCTCTAGGGCATATTTCCA 57.088 39.130 0.00 0.00 0.00 3.53
354 355 5.708736 TTGTCTCTAGGGCATATTTCCAA 57.291 39.130 0.00 0.00 0.00 3.53
355 356 5.912149 TGTCTCTAGGGCATATTTCCAAT 57.088 39.130 0.00 0.00 0.00 3.16
356 357 7.387265 TTGTCTCTAGGGCATATTTCCAATA 57.613 36.000 0.00 0.00 0.00 1.90
357 358 7.009179 TGTCTCTAGGGCATATTTCCAATAG 57.991 40.000 0.00 0.00 0.00 1.73
358 359 5.877564 GTCTCTAGGGCATATTTCCAATAGC 59.122 44.000 0.00 0.00 0.00 2.97
359 360 5.547666 TCTCTAGGGCATATTTCCAATAGCA 59.452 40.000 0.00 0.00 0.00 3.49
360 361 6.216251 TCTCTAGGGCATATTTCCAATAGCAT 59.784 38.462 0.00 0.00 0.00 3.79
361 362 6.418101 TCTAGGGCATATTTCCAATAGCATC 58.582 40.000 0.00 0.00 0.00 3.91
362 363 5.266709 AGGGCATATTTCCAATAGCATCT 57.733 39.130 0.00 0.00 0.00 2.90
363 364 5.648247 AGGGCATATTTCCAATAGCATCTT 58.352 37.500 0.00 0.00 0.00 2.40
364 365 5.713861 AGGGCATATTTCCAATAGCATCTTC 59.286 40.000 0.00 0.00 0.00 2.87
365 366 5.477984 GGGCATATTTCCAATAGCATCTTCA 59.522 40.000 0.00 0.00 0.00 3.02
366 367 6.154021 GGGCATATTTCCAATAGCATCTTCAT 59.846 38.462 0.00 0.00 0.00 2.57
367 368 7.310237 GGGCATATTTCCAATAGCATCTTCATT 60.310 37.037 0.00 0.00 0.00 2.57
368 369 7.758528 GGCATATTTCCAATAGCATCTTCATTC 59.241 37.037 0.00 0.00 0.00 2.67
369 370 8.301720 GCATATTTCCAATAGCATCTTCATTCA 58.698 33.333 0.00 0.00 0.00 2.57
370 371 9.841880 CATATTTCCAATAGCATCTTCATTCAG 57.158 33.333 0.00 0.00 0.00 3.02
371 372 6.704289 TTTCCAATAGCATCTTCATTCAGG 57.296 37.500 0.00 0.00 0.00 3.86
372 373 5.635278 TCCAATAGCATCTTCATTCAGGA 57.365 39.130 0.00 0.00 0.00 3.86
373 374 5.371526 TCCAATAGCATCTTCATTCAGGAC 58.628 41.667 0.00 0.00 0.00 3.85
374 375 4.518211 CCAATAGCATCTTCATTCAGGACC 59.482 45.833 0.00 0.00 0.00 4.46
375 376 5.128205 CAATAGCATCTTCATTCAGGACCA 58.872 41.667 0.00 0.00 0.00 4.02
376 377 2.996631 AGCATCTTCATTCAGGACCAC 58.003 47.619 0.00 0.00 0.00 4.16
377 378 2.306805 AGCATCTTCATTCAGGACCACA 59.693 45.455 0.00 0.00 0.00 4.17
378 379 3.084039 GCATCTTCATTCAGGACCACAA 58.916 45.455 0.00 0.00 0.00 3.33
379 380 3.128242 GCATCTTCATTCAGGACCACAAG 59.872 47.826 0.00 0.00 0.00 3.16
380 381 2.783135 TCTTCATTCAGGACCACAAGC 58.217 47.619 0.00 0.00 0.00 4.01
381 382 2.106338 TCTTCATTCAGGACCACAAGCA 59.894 45.455 0.00 0.00 0.00 3.91
382 383 2.655090 TCATTCAGGACCACAAGCAA 57.345 45.000 0.00 0.00 0.00 3.91
383 384 2.942804 TCATTCAGGACCACAAGCAAA 58.057 42.857 0.00 0.00 0.00 3.68
384 385 2.886523 TCATTCAGGACCACAAGCAAAG 59.113 45.455 0.00 0.00 0.00 2.77
385 386 2.727123 TTCAGGACCACAAGCAAAGA 57.273 45.000 0.00 0.00 0.00 2.52
386 387 1.967319 TCAGGACCACAAGCAAAGAC 58.033 50.000 0.00 0.00 0.00 3.01
387 388 1.211703 TCAGGACCACAAGCAAAGACA 59.788 47.619 0.00 0.00 0.00 3.41
388 389 1.605710 CAGGACCACAAGCAAAGACAG 59.394 52.381 0.00 0.00 0.00 3.51
389 390 1.212935 AGGACCACAAGCAAAGACAGT 59.787 47.619 0.00 0.00 0.00 3.55
390 391 2.024414 GGACCACAAGCAAAGACAGTT 58.976 47.619 0.00 0.00 0.00 3.16
391 392 3.118038 AGGACCACAAGCAAAGACAGTTA 60.118 43.478 0.00 0.00 0.00 2.24
392 393 3.821033 GGACCACAAGCAAAGACAGTTAT 59.179 43.478 0.00 0.00 0.00 1.89
393 394 4.278419 GGACCACAAGCAAAGACAGTTATT 59.722 41.667 0.00 0.00 0.00 1.40
394 395 5.186996 ACCACAAGCAAAGACAGTTATTG 57.813 39.130 0.00 0.00 0.00 1.90
395 396 4.644685 ACCACAAGCAAAGACAGTTATTGT 59.355 37.500 0.00 0.00 44.55 2.71
396 397 4.977963 CCACAAGCAAAGACAGTTATTGTG 59.022 41.667 7.91 7.91 43.39 3.33
397 398 5.450412 CCACAAGCAAAGACAGTTATTGTGT 60.450 40.000 12.52 0.00 42.65 3.72
398 399 6.238621 CCACAAGCAAAGACAGTTATTGTGTA 60.239 38.462 12.52 0.00 42.65 2.90
399 400 7.362662 CACAAGCAAAGACAGTTATTGTGTAT 58.637 34.615 6.92 0.00 41.05 2.29
400 401 7.535258 CACAAGCAAAGACAGTTATTGTGTATC 59.465 37.037 6.92 0.00 41.05 2.24
401 402 6.743575 AGCAAAGACAGTTATTGTGTATCC 57.256 37.500 0.00 0.00 41.05 2.59
402 403 6.476378 AGCAAAGACAGTTATTGTGTATCCT 58.524 36.000 0.00 0.00 41.05 3.24
403 404 6.595716 AGCAAAGACAGTTATTGTGTATCCTC 59.404 38.462 0.00 0.00 41.05 3.71
404 405 6.371548 GCAAAGACAGTTATTGTGTATCCTCA 59.628 38.462 0.00 0.00 41.05 3.86
405 406 7.624344 GCAAAGACAGTTATTGTGTATCCTCAC 60.624 40.741 0.00 0.00 41.05 3.51
406 407 6.859112 AGACAGTTATTGTGTATCCTCACT 57.141 37.500 0.00 0.00 41.05 3.41
407 408 7.956328 AGACAGTTATTGTGTATCCTCACTA 57.044 36.000 0.00 0.00 41.05 2.74
408 409 8.540507 AGACAGTTATTGTGTATCCTCACTAT 57.459 34.615 0.00 0.00 41.05 2.12
409 410 9.642343 AGACAGTTATTGTGTATCCTCACTATA 57.358 33.333 0.00 0.00 41.05 1.31
467 468 9.853555 TGACAACATGTATTTTGGATAATGTTC 57.146 29.630 0.00 0.00 36.40 3.18
468 469 9.853555 GACAACATGTATTTTGGATAATGTTCA 57.146 29.630 0.00 0.00 36.40 3.18
469 470 9.859427 ACAACATGTATTTTGGATAATGTTCAG 57.141 29.630 0.00 0.00 36.40 3.02
470 471 8.810427 CAACATGTATTTTGGATAATGTTCAGC 58.190 33.333 0.00 0.00 36.40 4.26
471 472 7.195646 ACATGTATTTTGGATAATGTTCAGCG 58.804 34.615 0.00 0.00 0.00 5.18
472 473 6.751514 TGTATTTTGGATAATGTTCAGCGT 57.248 33.333 0.00 0.00 0.00 5.07
473 474 6.550843 TGTATTTTGGATAATGTTCAGCGTG 58.449 36.000 0.00 0.00 0.00 5.34
474 475 5.895636 ATTTTGGATAATGTTCAGCGTGA 57.104 34.783 0.00 0.00 0.00 4.35
475 476 5.895636 TTTTGGATAATGTTCAGCGTGAT 57.104 34.783 0.00 0.00 0.00 3.06
476 477 5.895636 TTTGGATAATGTTCAGCGTGATT 57.104 34.783 0.00 0.00 0.00 2.57
477 478 5.895636 TTGGATAATGTTCAGCGTGATTT 57.104 34.783 0.00 0.00 0.00 2.17
478 479 5.895636 TGGATAATGTTCAGCGTGATTTT 57.104 34.783 0.00 0.00 0.00 1.82
479 480 6.993786 TGGATAATGTTCAGCGTGATTTTA 57.006 33.333 0.00 0.00 0.00 1.52
480 481 7.015226 TGGATAATGTTCAGCGTGATTTTAG 57.985 36.000 0.00 0.00 0.00 1.85
481 482 6.821160 TGGATAATGTTCAGCGTGATTTTAGA 59.179 34.615 0.00 0.00 0.00 2.10
482 483 7.335673 TGGATAATGTTCAGCGTGATTTTAGAA 59.664 33.333 0.00 0.00 0.00 2.10
483 484 8.181573 GGATAATGTTCAGCGTGATTTTAGAAA 58.818 33.333 0.00 0.00 0.00 2.52
484 485 9.554724 GATAATGTTCAGCGTGATTTTAGAAAA 57.445 29.630 0.00 0.00 0.00 2.29
485 486 9.906660 ATAATGTTCAGCGTGATTTTAGAAAAA 57.093 25.926 0.00 0.00 0.00 1.94
522 523 9.621629 TTTATCCAATTATACACCCAACTACTG 57.378 33.333 0.00 0.00 0.00 2.74
523 524 6.877668 TCCAATTATACACCCAACTACTGA 57.122 37.500 0.00 0.00 0.00 3.41
524 525 7.446106 TCCAATTATACACCCAACTACTGAT 57.554 36.000 0.00 0.00 0.00 2.90
525 526 7.867921 TCCAATTATACACCCAACTACTGATT 58.132 34.615 0.00 0.00 0.00 2.57
526 527 8.333235 TCCAATTATACACCCAACTACTGATTT 58.667 33.333 0.00 0.00 0.00 2.17
527 528 8.966868 CCAATTATACACCCAACTACTGATTTT 58.033 33.333 0.00 0.00 0.00 1.82
533 534 9.975218 ATACACCCAACTACTGATTTTTATTCT 57.025 29.630 0.00 0.00 0.00 2.40
534 535 8.706322 ACACCCAACTACTGATTTTTATTCTT 57.294 30.769 0.00 0.00 0.00 2.52
535 536 9.143155 ACACCCAACTACTGATTTTTATTCTTT 57.857 29.630 0.00 0.00 0.00 2.52
556 557 9.857957 TTCTTTAATTTCCAAAAGTACGTGTTT 57.142 25.926 0.00 0.00 34.88 2.83
563 564 8.631676 TTTCCAAAAGTACGTGTTTATTTTCC 57.368 30.769 0.00 0.00 0.00 3.13
564 565 6.737118 TCCAAAAGTACGTGTTTATTTTCCC 58.263 36.000 0.00 0.00 0.00 3.97
565 566 6.546772 TCCAAAAGTACGTGTTTATTTTCCCT 59.453 34.615 0.00 0.00 0.00 4.20
566 567 7.068470 TCCAAAAGTACGTGTTTATTTTCCCTT 59.932 33.333 0.00 0.00 0.00 3.95
567 568 7.707464 CCAAAAGTACGTGTTTATTTTCCCTTT 59.293 33.333 0.00 0.00 0.00 3.11
568 569 9.089601 CAAAAGTACGTGTTTATTTTCCCTTTT 57.910 29.630 0.00 0.00 0.00 2.27
572 573 9.734620 AGTACGTGTTTATTTTCCCTTTTAAAC 57.265 29.630 0.00 0.00 35.89 2.01
573 574 9.734620 GTACGTGTTTATTTTCCCTTTTAAACT 57.265 29.630 0.00 0.00 36.17 2.66
575 576 9.656040 ACGTGTTTATTTTCCCTTTTAAACTTT 57.344 25.926 0.00 0.00 36.17 2.66
743 753 4.150627 TGCGATCGAAAATCTATAGCTTGC 59.849 41.667 21.57 0.00 0.00 4.01
744 754 4.150627 GCGATCGAAAATCTATAGCTTGCA 59.849 41.667 21.57 0.00 0.00 4.08
745 755 5.163913 GCGATCGAAAATCTATAGCTTGCAT 60.164 40.000 21.57 0.00 0.00 3.96
868 902 4.767255 GCAGCGTGCCCAGCTACT 62.767 66.667 0.00 0.00 44.06 2.57
900 938 2.965147 GCGCGGCACAGTGATTCAA 61.965 57.895 8.83 0.00 0.00 2.69
915 953 4.016444 TGATTCAATGAAACCAGCTACCC 58.984 43.478 0.00 0.00 0.00 3.69
937 979 4.439153 CCAGTCCGCTAGTCGTATTAAACA 60.439 45.833 5.97 0.00 36.19 2.83
981 1024 3.413075 AGCCTATAAAAGGGGGATCCAA 58.587 45.455 15.23 0.00 46.65 3.53
1006 1075 0.987294 AGCATAAGCCACCACACTCT 59.013 50.000 0.00 0.00 43.56 3.24
1013 1082 0.321564 GCCACCACACTCTGCACATA 60.322 55.000 0.00 0.00 0.00 2.29
1042 1126 4.377021 TCCTCTCACACATACAACAACAC 58.623 43.478 0.00 0.00 0.00 3.32
1043 1127 3.498397 CCTCTCACACATACAACAACACC 59.502 47.826 0.00 0.00 0.00 4.16
1044 1128 4.126437 CTCTCACACATACAACAACACCA 58.874 43.478 0.00 0.00 0.00 4.17
1045 1129 4.126437 TCTCACACATACAACAACACCAG 58.874 43.478 0.00 0.00 0.00 4.00
1046 1130 4.126437 CTCACACATACAACAACACCAGA 58.874 43.478 0.00 0.00 0.00 3.86
1047 1131 4.126437 TCACACATACAACAACACCAGAG 58.874 43.478 0.00 0.00 0.00 3.35
1048 1132 3.876914 CACACATACAACAACACCAGAGT 59.123 43.478 0.00 0.00 0.00 3.24
1049 1133 4.024893 CACACATACAACAACACCAGAGTC 60.025 45.833 0.00 0.00 0.00 3.36
1260 1349 1.433879 CGAGTAAGGACCTCTGCCG 59.566 63.158 0.00 0.00 0.00 5.69
1334 1902 2.157738 GCTTCTTTGCTGTGGACAGAT 58.842 47.619 11.06 0.00 46.59 2.90
1532 2100 3.052081 GTCACTGGGACGCTGACT 58.948 61.111 0.00 0.00 36.65 3.41
1577 2145 2.993264 ACTGGCAGTGGCAATGGC 60.993 61.111 31.01 31.01 43.71 4.40
1579 2147 2.992689 TGGCAGTGGCAATGGCAG 60.993 61.111 35.29 2.62 46.94 4.85
1580 2148 2.993264 GGCAGTGGCAATGGCAGT 60.993 61.111 32.31 11.12 42.52 4.40
1583 2151 2.993264 AGTGGCAATGGCAGTGGC 60.993 61.111 31.01 31.01 40.26 5.01
1589 2163 4.666253 AATGGCAGTGGCAGCGGT 62.666 61.111 24.68 5.03 42.43 5.68
1670 2244 0.550914 TCCTTGGCGGCATCCTTAAT 59.449 50.000 14.32 0.00 0.00 1.40
1673 2247 3.157087 CCTTGGCGGCATCCTTAATATT 58.843 45.455 14.32 0.00 0.00 1.28
1727 2303 0.744057 TACTACCGGCGTGTCGATCA 60.744 55.000 6.01 0.00 0.00 2.92
1730 2306 0.038435 TACCGGCGTGTCGATCAAAA 60.038 50.000 6.01 0.00 0.00 2.44
1783 2371 3.311596 GCCAATCTATCAACGTACCCAAC 59.688 47.826 0.00 0.00 0.00 3.77
1821 2654 8.433126 CCCGCTTTATTATGTAAAATCTACTCG 58.567 37.037 0.00 0.00 0.00 4.18
1870 2704 6.708054 AGAAGCACATAAGTAAGCATATCACC 59.292 38.462 0.00 0.00 0.00 4.02
1871 2705 6.179906 AGCACATAAGTAAGCATATCACCT 57.820 37.500 0.00 0.00 0.00 4.00
1872 2706 7.303182 AGCACATAAGTAAGCATATCACCTA 57.697 36.000 0.00 0.00 0.00 3.08
1873 2707 7.735917 AGCACATAAGTAAGCATATCACCTAA 58.264 34.615 0.00 0.00 0.00 2.69
1874 2708 8.378565 AGCACATAAGTAAGCATATCACCTAAT 58.621 33.333 0.00 0.00 0.00 1.73
1875 2709 9.653287 GCACATAAGTAAGCATATCACCTAATA 57.347 33.333 0.00 0.00 0.00 0.98
1894 2731 8.766476 ACCTAATAGTAGTACTCTGAGTGTGTA 58.234 37.037 20.19 6.11 0.00 2.90
1911 2748 9.617523 TGAGTGTGTATCATGTGATCAATATTT 57.382 29.630 0.00 0.00 36.05 1.40
2011 2866 0.391597 ACTTCACAGTGGTACCCGTG 59.608 55.000 10.07 13.98 0.00 4.94
2072 2927 3.604667 CACCCTTGCTTTGCGGCA 61.605 61.111 0.00 0.00 40.74 5.69
2089 2944 1.133790 GGCACCATTCTTCACTCATGC 59.866 52.381 0.00 0.00 0.00 4.06
2157 3013 7.531857 TTGTTTGGCTTTTATCTATGTTGGA 57.468 32.000 0.00 0.00 0.00 3.53
2197 3061 8.789881 TGTTACATGTTGCAGTTTTTGTATAC 57.210 30.769 2.30 0.00 0.00 1.47
2203 3067 2.096169 TGCAGTTTTTGTATACCGTGCG 60.096 45.455 0.00 0.00 32.23 5.34
2282 3146 6.498304 CATGATTTATGGTGTCTTTACAGGC 58.502 40.000 0.00 0.00 35.91 4.85
2283 3147 5.565509 TGATTTATGGTGTCTTTACAGGCA 58.434 37.500 0.00 0.00 35.91 4.75
2311 3175 1.876799 TGGTGTAAGCAAATGGTGACG 59.123 47.619 0.00 0.00 44.10 4.35
2315 3190 1.877443 GTAAGCAAATGGTGACGGTGT 59.123 47.619 0.00 0.00 0.00 4.16
2330 3205 4.584743 TGACGGTGTGAGCTCATATTCTAT 59.415 41.667 21.47 2.57 0.00 1.98
2332 3207 4.584743 ACGGTGTGAGCTCATATTCTATGA 59.415 41.667 21.47 0.00 0.00 2.15
2363 3238 4.835199 AGAATTGGTTCGATAACGTTCG 57.165 40.909 2.82 3.07 39.38 3.95
2366 3241 0.737019 TGGTTCGATAACGTTCGGGC 60.737 55.000 2.82 0.03 39.56 6.13
2418 3294 4.554363 CCCTACACCGCTCGCTCG 62.554 72.222 0.00 0.00 0.00 5.03
2425 3301 2.181021 CCGCTCGCTCGTTTAGGT 59.819 61.111 0.00 0.00 0.00 3.08
2452 3329 2.202492 CTCGCGACGCTGCTACTT 60.202 61.111 19.02 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.095483 CCTTAGACCATGAGATTGTGCAAC 59.905 45.833 0.00 0.00 37.35 4.17
2 3 3.519107 TCCTTAGACCATGAGATTGTGCA 59.481 43.478 0.00 0.00 0.00 4.57
3 4 4.142609 TCCTTAGACCATGAGATTGTGC 57.857 45.455 0.00 0.00 0.00 4.57
4 5 6.825213 TCATTTCCTTAGACCATGAGATTGTG 59.175 38.462 0.00 0.00 0.00 3.33
5 6 6.962182 TCATTTCCTTAGACCATGAGATTGT 58.038 36.000 0.00 0.00 0.00 2.71
6 7 8.997323 GTATCATTTCCTTAGACCATGAGATTG 58.003 37.037 0.00 0.00 29.44 2.67
7 8 8.943085 AGTATCATTTCCTTAGACCATGAGATT 58.057 33.333 0.00 0.00 29.44 2.40
8 9 8.503428 AGTATCATTTCCTTAGACCATGAGAT 57.497 34.615 0.00 0.00 29.44 2.75
9 10 7.921041 AGTATCATTTCCTTAGACCATGAGA 57.079 36.000 0.00 0.00 29.44 3.27
10 11 8.206867 TCAAGTATCATTTCCTTAGACCATGAG 58.793 37.037 0.00 0.00 29.44 2.90
11 12 7.987458 GTCAAGTATCATTTCCTTAGACCATGA 59.013 37.037 0.00 0.00 0.00 3.07
12 13 7.770433 TGTCAAGTATCATTTCCTTAGACCATG 59.230 37.037 0.00 0.00 0.00 3.66
13 14 7.861629 TGTCAAGTATCATTTCCTTAGACCAT 58.138 34.615 0.00 0.00 0.00 3.55
14 15 7.252612 TGTCAAGTATCATTTCCTTAGACCA 57.747 36.000 0.00 0.00 0.00 4.02
15 16 8.738645 AATGTCAAGTATCATTTCCTTAGACC 57.261 34.615 0.00 0.00 31.35 3.85
16 17 9.383519 TGAATGTCAAGTATCATTTCCTTAGAC 57.616 33.333 0.00 0.00 34.92 2.59
17 18 9.605275 CTGAATGTCAAGTATCATTTCCTTAGA 57.395 33.333 0.00 0.00 34.92 2.10
18 19 9.605275 TCTGAATGTCAAGTATCATTTCCTTAG 57.395 33.333 0.00 0.00 34.92 2.18
19 20 9.958180 TTCTGAATGTCAAGTATCATTTCCTTA 57.042 29.630 0.00 0.00 34.92 2.69
20 21 8.868522 TTCTGAATGTCAAGTATCATTTCCTT 57.131 30.769 0.00 0.00 34.92 3.36
21 22 8.868522 TTTCTGAATGTCAAGTATCATTTCCT 57.131 30.769 0.00 0.00 34.92 3.36
22 23 9.565213 CTTTTCTGAATGTCAAGTATCATTTCC 57.435 33.333 0.00 0.00 34.92 3.13
23 24 9.070149 GCTTTTCTGAATGTCAAGTATCATTTC 57.930 33.333 0.00 0.00 34.92 2.17
24 25 8.800332 AGCTTTTCTGAATGTCAAGTATCATTT 58.200 29.630 0.00 0.00 34.92 2.32
25 26 8.345724 AGCTTTTCTGAATGTCAAGTATCATT 57.654 30.769 0.00 0.00 37.04 2.57
26 27 7.934855 AGCTTTTCTGAATGTCAAGTATCAT 57.065 32.000 0.00 0.00 0.00 2.45
27 28 7.877612 TGTAGCTTTTCTGAATGTCAAGTATCA 59.122 33.333 0.00 0.00 0.00 2.15
28 29 8.256611 TGTAGCTTTTCTGAATGTCAAGTATC 57.743 34.615 0.00 0.00 0.00 2.24
29 30 8.507249 GTTGTAGCTTTTCTGAATGTCAAGTAT 58.493 33.333 0.00 0.00 0.00 2.12
30 31 7.497579 TGTTGTAGCTTTTCTGAATGTCAAGTA 59.502 33.333 0.00 0.00 0.00 2.24
31 32 6.318648 TGTTGTAGCTTTTCTGAATGTCAAGT 59.681 34.615 0.00 0.00 0.00 3.16
32 33 6.728200 TGTTGTAGCTTTTCTGAATGTCAAG 58.272 36.000 0.00 0.00 0.00 3.02
33 34 6.691754 TGTTGTAGCTTTTCTGAATGTCAA 57.308 33.333 0.00 0.00 0.00 3.18
34 35 6.691754 TTGTTGTAGCTTTTCTGAATGTCA 57.308 33.333 0.00 0.00 0.00 3.58
35 36 6.140737 CGTTTGTTGTAGCTTTTCTGAATGTC 59.859 38.462 0.00 0.00 0.00 3.06
36 37 5.971202 CGTTTGTTGTAGCTTTTCTGAATGT 59.029 36.000 0.00 0.00 0.00 2.71
37 38 6.198687 TCGTTTGTTGTAGCTTTTCTGAATG 58.801 36.000 0.00 0.00 0.00 2.67
38 39 6.371809 TCGTTTGTTGTAGCTTTTCTGAAT 57.628 33.333 0.00 0.00 0.00 2.57
39 40 5.804692 TCGTTTGTTGTAGCTTTTCTGAA 57.195 34.783 0.00 0.00 0.00 3.02
40 41 5.353123 AGTTCGTTTGTTGTAGCTTTTCTGA 59.647 36.000 0.00 0.00 0.00 3.27
41 42 5.569413 AGTTCGTTTGTTGTAGCTTTTCTG 58.431 37.500 0.00 0.00 0.00 3.02
42 43 5.813080 AGTTCGTTTGTTGTAGCTTTTCT 57.187 34.783 0.00 0.00 0.00 2.52
43 44 6.410048 GTGTAGTTCGTTTGTTGTAGCTTTTC 59.590 38.462 0.00 0.00 0.00 2.29
44 45 6.253013 GTGTAGTTCGTTTGTTGTAGCTTTT 58.747 36.000 0.00 0.00 0.00 2.27
45 46 5.501252 CGTGTAGTTCGTTTGTTGTAGCTTT 60.501 40.000 0.00 0.00 0.00 3.51
46 47 4.026310 CGTGTAGTTCGTTTGTTGTAGCTT 60.026 41.667 0.00 0.00 0.00 3.74
47 48 3.488310 CGTGTAGTTCGTTTGTTGTAGCT 59.512 43.478 0.00 0.00 0.00 3.32
48 49 3.486841 TCGTGTAGTTCGTTTGTTGTAGC 59.513 43.478 0.00 0.00 0.00 3.58
49 50 5.628193 AGATCGTGTAGTTCGTTTGTTGTAG 59.372 40.000 0.00 0.00 0.00 2.74
50 51 5.522456 AGATCGTGTAGTTCGTTTGTTGTA 58.478 37.500 0.00 0.00 0.00 2.41
51 52 4.365723 AGATCGTGTAGTTCGTTTGTTGT 58.634 39.130 0.00 0.00 0.00 3.32
52 53 4.966850 AGATCGTGTAGTTCGTTTGTTG 57.033 40.909 0.00 0.00 0.00 3.33
53 54 5.292589 ACAAAGATCGTGTAGTTCGTTTGTT 59.707 36.000 3.52 0.00 32.53 2.83
54 55 4.807304 ACAAAGATCGTGTAGTTCGTTTGT 59.193 37.500 3.52 0.85 32.13 2.83
55 56 5.130519 CACAAAGATCGTGTAGTTCGTTTG 58.869 41.667 4.96 1.02 0.00 2.93
56 57 4.318546 GCACAAAGATCGTGTAGTTCGTTT 60.319 41.667 4.96 0.00 36.71 3.60
57 58 3.183775 GCACAAAGATCGTGTAGTTCGTT 59.816 43.478 4.96 0.00 36.71 3.85
58 59 2.729882 GCACAAAGATCGTGTAGTTCGT 59.270 45.455 4.96 0.00 36.71 3.85
59 60 2.987149 AGCACAAAGATCGTGTAGTTCG 59.013 45.455 4.96 0.00 36.71 3.95
60 61 5.500931 GCATAGCACAAAGATCGTGTAGTTC 60.501 44.000 4.96 0.00 36.71 3.01
61 62 4.330074 GCATAGCACAAAGATCGTGTAGTT 59.670 41.667 4.96 2.32 36.71 2.24
62 63 3.865745 GCATAGCACAAAGATCGTGTAGT 59.134 43.478 4.96 0.00 36.71 2.73
63 64 4.115516 AGCATAGCACAAAGATCGTGTAG 58.884 43.478 4.96 2.56 36.71 2.74
64 65 4.123497 AGCATAGCACAAAGATCGTGTA 57.877 40.909 4.96 0.00 36.71 2.90
65 66 2.977914 AGCATAGCACAAAGATCGTGT 58.022 42.857 0.00 0.00 36.71 4.49
66 67 4.025396 CCTAAGCATAGCACAAAGATCGTG 60.025 45.833 0.00 0.00 37.43 4.35
67 68 4.122776 CCTAAGCATAGCACAAAGATCGT 58.877 43.478 0.00 0.00 0.00 3.73
68 69 4.122776 ACCTAAGCATAGCACAAAGATCG 58.877 43.478 0.00 0.00 0.00 3.69
69 70 6.261118 CAAACCTAAGCATAGCACAAAGATC 58.739 40.000 0.00 0.00 0.00 2.75
70 71 5.126061 CCAAACCTAAGCATAGCACAAAGAT 59.874 40.000 0.00 0.00 0.00 2.40
71 72 4.458989 CCAAACCTAAGCATAGCACAAAGA 59.541 41.667 0.00 0.00 0.00 2.52
72 73 4.380867 CCCAAACCTAAGCATAGCACAAAG 60.381 45.833 0.00 0.00 0.00 2.77
73 74 3.509575 CCCAAACCTAAGCATAGCACAAA 59.490 43.478 0.00 0.00 0.00 2.83
74 75 3.088532 CCCAAACCTAAGCATAGCACAA 58.911 45.455 0.00 0.00 0.00 3.33
75 76 2.041081 ACCCAAACCTAAGCATAGCACA 59.959 45.455 0.00 0.00 0.00 4.57
76 77 2.683362 GACCCAAACCTAAGCATAGCAC 59.317 50.000 0.00 0.00 0.00 4.40
77 78 2.576191 AGACCCAAACCTAAGCATAGCA 59.424 45.455 0.00 0.00 0.00 3.49
78 79 3.283259 AGACCCAAACCTAAGCATAGC 57.717 47.619 0.00 0.00 0.00 2.97
79 80 4.589908 ACAAGACCCAAACCTAAGCATAG 58.410 43.478 0.00 0.00 0.00 2.23
80 81 4.566907 GGACAAGACCCAAACCTAAGCATA 60.567 45.833 0.00 0.00 0.00 3.14
81 82 3.421844 GACAAGACCCAAACCTAAGCAT 58.578 45.455 0.00 0.00 0.00 3.79
82 83 2.488347 GGACAAGACCCAAACCTAAGCA 60.488 50.000 0.00 0.00 0.00 3.91
83 84 2.160205 GGACAAGACCCAAACCTAAGC 58.840 52.381 0.00 0.00 0.00 3.09
84 85 3.502123 TGGACAAGACCCAAACCTAAG 57.498 47.619 0.00 0.00 0.00 2.18
85 86 3.396276 TGATGGACAAGACCCAAACCTAA 59.604 43.478 0.00 0.00 37.22 2.69
86 87 2.983192 TGATGGACAAGACCCAAACCTA 59.017 45.455 0.00 0.00 37.22 3.08
87 88 1.780309 TGATGGACAAGACCCAAACCT 59.220 47.619 0.00 0.00 37.22 3.50
88 89 1.886542 GTGATGGACAAGACCCAAACC 59.113 52.381 0.00 0.00 37.22 3.27
89 90 2.582052 TGTGATGGACAAGACCCAAAC 58.418 47.619 0.00 0.00 37.22 2.93
90 91 3.181435 TGATGTGATGGACAAGACCCAAA 60.181 43.478 0.00 0.00 38.36 3.28
91 92 2.374839 TGATGTGATGGACAAGACCCAA 59.625 45.455 0.00 0.00 38.36 4.12
92 93 1.984424 TGATGTGATGGACAAGACCCA 59.016 47.619 0.00 0.00 38.36 4.51
93 94 2.787473 TGATGTGATGGACAAGACCC 57.213 50.000 0.00 0.00 38.36 4.46
94 95 4.521146 AGAATGATGTGATGGACAAGACC 58.479 43.478 0.00 0.00 38.36 3.85
95 96 4.574013 GGAGAATGATGTGATGGACAAGAC 59.426 45.833 0.00 0.00 38.36 3.01
96 97 4.472470 AGGAGAATGATGTGATGGACAAGA 59.528 41.667 0.00 0.00 38.36 3.02
97 98 4.778579 AGGAGAATGATGTGATGGACAAG 58.221 43.478 0.00 0.00 38.36 3.16
98 99 4.849813 AGGAGAATGATGTGATGGACAA 57.150 40.909 0.00 0.00 38.36 3.18
99 100 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
100 101 6.528321 TCATTAGGAGAATGATGTGATGGAC 58.472 40.000 0.00 0.00 32.21 4.02
101 102 6.752285 TCATTAGGAGAATGATGTGATGGA 57.248 37.500 0.00 0.00 32.21 3.41
109 110 6.872547 CGTGATCACATCATTAGGAGAATGAT 59.127 38.462 24.93 6.90 45.40 2.45
110 111 6.183360 ACGTGATCACATCATTAGGAGAATGA 60.183 38.462 24.93 2.66 42.04 2.57
111 112 5.987953 ACGTGATCACATCATTAGGAGAATG 59.012 40.000 24.93 5.77 42.04 2.67
112 113 6.166984 ACGTGATCACATCATTAGGAGAAT 57.833 37.500 24.93 0.00 42.04 2.40
113 114 5.598416 ACGTGATCACATCATTAGGAGAA 57.402 39.130 24.93 0.00 42.04 2.87
114 115 5.598416 AACGTGATCACATCATTAGGAGA 57.402 39.130 24.93 0.00 42.04 3.71
115 116 7.147976 TGATAACGTGATCACATCATTAGGAG 58.852 38.462 24.93 7.49 42.04 3.69
116 117 7.049799 TGATAACGTGATCACATCATTAGGA 57.950 36.000 24.93 2.09 42.04 2.94
117 118 7.713764 TTGATAACGTGATCACATCATTAGG 57.286 36.000 24.93 8.88 42.04 2.69
118 119 8.981647 TCATTGATAACGTGATCACATCATTAG 58.018 33.333 24.93 16.43 42.04 1.73
119 120 8.764287 GTCATTGATAACGTGATCACATCATTA 58.236 33.333 24.93 16.30 42.04 1.90
120 121 7.280652 TGTCATTGATAACGTGATCACATCATT 59.719 33.333 24.93 17.68 42.04 2.57
121 122 6.762661 TGTCATTGATAACGTGATCACATCAT 59.237 34.615 24.93 13.63 42.04 2.45
122 123 6.105333 TGTCATTGATAACGTGATCACATCA 58.895 36.000 24.93 21.33 35.56 3.07
123 124 6.588348 TGTCATTGATAACGTGATCACATC 57.412 37.500 24.93 19.22 35.56 3.06
124 125 6.203530 GGATGTCATTGATAACGTGATCACAT 59.796 38.462 24.93 14.51 35.56 3.21
125 126 5.523552 GGATGTCATTGATAACGTGATCACA 59.476 40.000 24.93 10.38 35.56 3.58
126 127 5.050091 GGGATGTCATTGATAACGTGATCAC 60.050 44.000 15.50 16.21 35.56 3.06
127 128 5.056480 GGGATGTCATTGATAACGTGATCA 58.944 41.667 11.81 11.81 33.96 2.92
128 129 4.452455 GGGGATGTCATTGATAACGTGATC 59.548 45.833 5.89 5.89 0.00 2.92
129 130 4.141505 TGGGGATGTCATTGATAACGTGAT 60.142 41.667 0.00 0.00 0.00 3.06
130 131 3.198853 TGGGGATGTCATTGATAACGTGA 59.801 43.478 0.00 0.00 0.00 4.35
131 132 3.540617 TGGGGATGTCATTGATAACGTG 58.459 45.455 0.00 0.00 0.00 4.49
132 133 3.924114 TGGGGATGTCATTGATAACGT 57.076 42.857 0.00 0.00 0.00 3.99
133 134 4.136796 ACATGGGGATGTCATTGATAACG 58.863 43.478 0.00 0.00 0.00 3.18
144 145 0.773644 GGCTATGGACATGGGGATGT 59.226 55.000 0.00 0.00 37.50 3.06
145 146 0.773014 TGGCTATGGACATGGGGATG 59.227 55.000 0.00 0.00 0.00 3.51
146 147 1.070604 CTGGCTATGGACATGGGGAT 58.929 55.000 0.00 0.00 0.00 3.85
147 148 1.061905 CCTGGCTATGGACATGGGGA 61.062 60.000 0.00 0.00 0.00 4.81
148 149 1.061905 TCCTGGCTATGGACATGGGG 61.062 60.000 0.00 0.00 0.00 4.96
149 150 0.846015 TTCCTGGCTATGGACATGGG 59.154 55.000 0.00 0.00 32.65 4.00
150 151 2.301346 GTTTCCTGGCTATGGACATGG 58.699 52.381 0.00 0.00 32.65 3.66
151 152 2.301346 GGTTTCCTGGCTATGGACATG 58.699 52.381 0.00 0.00 32.65 3.21
152 153 1.922447 TGGTTTCCTGGCTATGGACAT 59.078 47.619 0.00 0.00 32.65 3.06
153 154 1.367346 TGGTTTCCTGGCTATGGACA 58.633 50.000 0.00 0.00 32.65 4.02
154 155 2.092429 TCATGGTTTCCTGGCTATGGAC 60.092 50.000 0.00 0.00 32.65 4.02
155 156 2.092429 GTCATGGTTTCCTGGCTATGGA 60.092 50.000 0.00 0.00 0.00 3.41
156 157 2.092212 AGTCATGGTTTCCTGGCTATGG 60.092 50.000 0.00 0.00 0.00 2.74
157 158 3.287867 AGTCATGGTTTCCTGGCTATG 57.712 47.619 0.00 0.00 0.00 2.23
158 159 4.910304 AGATAGTCATGGTTTCCTGGCTAT 59.090 41.667 10.00 10.00 41.67 2.97
159 160 4.101585 CAGATAGTCATGGTTTCCTGGCTA 59.898 45.833 0.00 0.00 34.35 3.93
160 161 3.118112 CAGATAGTCATGGTTTCCTGGCT 60.118 47.826 0.00 0.00 0.00 4.75
161 162 3.209410 CAGATAGTCATGGTTTCCTGGC 58.791 50.000 0.00 0.00 0.00 4.85
162 163 4.494091 ACAGATAGTCATGGTTTCCTGG 57.506 45.455 0.00 0.00 0.00 4.45
163 164 5.491070 TCAACAGATAGTCATGGTTTCCTG 58.509 41.667 0.00 0.00 0.00 3.86
164 165 5.762179 TCAACAGATAGTCATGGTTTCCT 57.238 39.130 0.00 0.00 0.00 3.36
165 166 6.115446 TGATCAACAGATAGTCATGGTTTCC 58.885 40.000 0.00 0.00 0.00 3.13
166 167 7.467623 GTTGATCAACAGATAGTCATGGTTTC 58.532 38.462 29.43 0.00 40.84 2.78
167 168 6.092670 CGTTGATCAACAGATAGTCATGGTTT 59.907 38.462 32.06 0.00 41.20 3.27
168 169 5.582269 CGTTGATCAACAGATAGTCATGGTT 59.418 40.000 32.06 0.00 41.20 3.67
169 170 5.105351 TCGTTGATCAACAGATAGTCATGGT 60.105 40.000 32.06 0.00 41.20 3.55
170 171 5.351458 TCGTTGATCAACAGATAGTCATGG 58.649 41.667 32.06 15.04 41.20 3.66
171 172 5.051173 GCTCGTTGATCAACAGATAGTCATG 60.051 44.000 32.06 18.25 41.20 3.07
172 173 5.046529 GCTCGTTGATCAACAGATAGTCAT 58.953 41.667 32.06 0.00 41.20 3.06
173 174 4.158579 AGCTCGTTGATCAACAGATAGTCA 59.841 41.667 32.06 11.38 41.20 3.41
174 175 4.677584 AGCTCGTTGATCAACAGATAGTC 58.322 43.478 32.06 19.15 41.20 2.59
175 176 4.727507 AGCTCGTTGATCAACAGATAGT 57.272 40.909 32.06 16.47 41.20 2.12
176 177 5.826586 ACTAGCTCGTTGATCAACAGATAG 58.173 41.667 33.05 33.05 40.27 2.08
177 178 5.357032 TGACTAGCTCGTTGATCAACAGATA 59.643 40.000 32.06 26.63 41.20 1.98
178 179 4.158579 TGACTAGCTCGTTGATCAACAGAT 59.841 41.667 32.06 26.87 41.20 2.90
179 180 3.506067 TGACTAGCTCGTTGATCAACAGA 59.494 43.478 32.06 26.81 41.20 3.41
180 181 3.838120 TGACTAGCTCGTTGATCAACAG 58.162 45.455 32.06 26.93 41.20 3.16
181 182 3.934457 TGACTAGCTCGTTGATCAACA 57.066 42.857 32.06 20.24 41.20 3.33
182 183 4.238514 AGTTGACTAGCTCGTTGATCAAC 58.761 43.478 25.68 25.68 43.94 3.18
183 184 4.521130 AGTTGACTAGCTCGTTGATCAA 57.479 40.909 3.38 3.38 0.00 2.57
184 185 4.941873 TCTAGTTGACTAGCTCGTTGATCA 59.058 41.667 12.30 0.00 44.24 2.92
185 186 5.487153 TCTAGTTGACTAGCTCGTTGATC 57.513 43.478 12.30 0.00 44.24 2.92
186 187 4.336993 CCTCTAGTTGACTAGCTCGTTGAT 59.663 45.833 12.30 0.00 44.24 2.57
187 188 3.690139 CCTCTAGTTGACTAGCTCGTTGA 59.310 47.826 12.30 0.00 44.24 3.18
188 189 3.732471 GCCTCTAGTTGACTAGCTCGTTG 60.732 52.174 12.30 0.75 44.24 4.10
189 190 2.424246 GCCTCTAGTTGACTAGCTCGTT 59.576 50.000 12.30 0.00 44.24 3.85
190 191 2.018515 GCCTCTAGTTGACTAGCTCGT 58.981 52.381 12.30 0.00 44.24 4.18
191 192 2.289547 GAGCCTCTAGTTGACTAGCTCG 59.710 54.545 12.30 0.00 44.24 5.03
192 193 3.066203 GTGAGCCTCTAGTTGACTAGCTC 59.934 52.174 17.34 17.34 44.24 4.09
193 194 3.020984 GTGAGCCTCTAGTTGACTAGCT 58.979 50.000 12.30 7.92 44.24 3.32
194 195 3.020984 AGTGAGCCTCTAGTTGACTAGC 58.979 50.000 12.30 3.61 44.24 3.42
195 196 5.676552 TCTAGTGAGCCTCTAGTTGACTAG 58.323 45.833 11.14 11.14 45.57 2.57
196 197 5.425862 TCTCTAGTGAGCCTCTAGTTGACTA 59.574 44.000 0.00 0.00 40.03 2.59
197 198 4.226394 TCTCTAGTGAGCCTCTAGTTGACT 59.774 45.833 0.00 0.00 40.03 3.41
198 199 4.334481 GTCTCTAGTGAGCCTCTAGTTGAC 59.666 50.000 0.00 12.70 40.03 3.18
199 200 4.019231 TGTCTCTAGTGAGCCTCTAGTTGA 60.019 45.833 0.00 7.67 40.03 3.18
200 201 4.095782 GTGTCTCTAGTGAGCCTCTAGTTG 59.904 50.000 0.00 6.22 40.03 3.16
201 202 4.263550 TGTGTCTCTAGTGAGCCTCTAGTT 60.264 45.833 0.00 0.00 40.03 2.24
202 203 3.264706 TGTGTCTCTAGTGAGCCTCTAGT 59.735 47.826 0.00 0.00 40.03 2.57
203 204 3.879998 TGTGTCTCTAGTGAGCCTCTAG 58.120 50.000 0.00 0.00 40.03 2.43
204 205 4.511786 ATGTGTCTCTAGTGAGCCTCTA 57.488 45.455 0.00 0.00 40.03 2.43
205 206 2.889170 TGTGTCTCTAGTGAGCCTCT 57.111 50.000 0.00 0.00 40.03 3.69
206 207 5.508825 CCATAATGTGTCTCTAGTGAGCCTC 60.509 48.000 0.00 0.00 40.03 4.70
207 208 4.343526 CCATAATGTGTCTCTAGTGAGCCT 59.656 45.833 0.00 0.00 40.03 4.58
208 209 4.100189 ACCATAATGTGTCTCTAGTGAGCC 59.900 45.833 0.00 0.00 40.03 4.70
209 210 5.068460 AGACCATAATGTGTCTCTAGTGAGC 59.932 44.000 0.00 0.00 37.24 4.26
210 211 6.707440 AGACCATAATGTGTCTCTAGTGAG 57.293 41.667 0.00 0.00 37.24 3.51
211 212 7.780271 ACATAGACCATAATGTGTCTCTAGTGA 59.220 37.037 4.52 0.00 40.84 3.41
212 213 7.946207 ACATAGACCATAATGTGTCTCTAGTG 58.054 38.462 4.52 0.00 40.84 2.74
213 214 9.815306 ATACATAGACCATAATGTGTCTCTAGT 57.185 33.333 4.52 5.39 40.84 2.57
216 217 9.147732 TGAATACATAGACCATAATGTGTCTCT 57.852 33.333 4.52 0.00 40.84 3.10
217 218 9.197694 GTGAATACATAGACCATAATGTGTCTC 57.802 37.037 4.52 0.00 40.84 3.36
218 219 8.704668 TGTGAATACATAGACCATAATGTGTCT 58.295 33.333 0.00 0.00 43.85 3.41
219 220 8.765219 GTGTGAATACATAGACCATAATGTGTC 58.235 37.037 0.00 0.00 39.39 3.67
220 221 8.264347 TGTGTGAATACATAGACCATAATGTGT 58.736 33.333 0.00 0.00 39.39 3.72
221 222 8.661352 TGTGTGAATACATAGACCATAATGTG 57.339 34.615 0.00 0.00 39.39 3.21
222 223 9.276590 CATGTGTGAATACATAGACCATAATGT 57.723 33.333 0.00 0.00 39.17 2.71
223 224 9.276590 ACATGTGTGAATACATAGACCATAATG 57.723 33.333 0.00 0.00 39.17 1.90
228 229 9.758651 GTAATACATGTGTGAATACATAGACCA 57.241 33.333 9.11 0.00 39.17 4.02
229 230 8.912658 CGTAATACATGTGTGAATACATAGACC 58.087 37.037 9.11 0.00 39.17 3.85
230 231 9.673454 TCGTAATACATGTGTGAATACATAGAC 57.327 33.333 9.11 0.00 39.17 2.59
235 236 8.822855 GGAAATCGTAATACATGTGTGAATACA 58.177 33.333 9.11 0.00 34.63 2.29
236 237 8.002107 CGGAAATCGTAATACATGTGTGAATAC 58.998 37.037 9.11 0.76 0.00 1.89
237 238 7.170151 CCGGAAATCGTAATACATGTGTGAATA 59.830 37.037 9.11 0.00 37.11 1.75
238 239 6.018262 CCGGAAATCGTAATACATGTGTGAAT 60.018 38.462 9.11 0.00 37.11 2.57
239 240 5.292345 CCGGAAATCGTAATACATGTGTGAA 59.708 40.000 9.11 0.00 37.11 3.18
240 241 4.806775 CCGGAAATCGTAATACATGTGTGA 59.193 41.667 9.11 0.00 37.11 3.58
241 242 4.806775 TCCGGAAATCGTAATACATGTGTG 59.193 41.667 9.11 0.00 37.11 3.82
242 243 5.013568 TCCGGAAATCGTAATACATGTGT 57.986 39.130 9.11 0.00 37.11 3.72
243 244 7.646446 TTATCCGGAAATCGTAATACATGTG 57.354 36.000 9.01 0.00 37.11 3.21
244 245 9.362539 GTATTATCCGGAAATCGTAATACATGT 57.637 33.333 26.02 2.69 39.91 3.21
245 246 9.361315 TGTATTATCCGGAAATCGTAATACATG 57.639 33.333 28.04 0.00 42.13 3.21
246 247 9.932207 TTGTATTATCCGGAAATCGTAATACAT 57.068 29.630 30.15 8.87 43.96 2.29
247 248 9.932207 ATTGTATTATCCGGAAATCGTAATACA 57.068 29.630 28.04 28.04 43.49 2.29
253 254 9.095065 GCTATAATTGTATTATCCGGAAATCGT 57.905 33.333 9.01 0.00 37.11 3.73
254 255 9.093970 TGCTATAATTGTATTATCCGGAAATCG 57.906 33.333 9.01 0.00 38.88 3.34
257 258 9.952030 TCATGCTATAATTGTATTATCCGGAAA 57.048 29.630 9.01 4.74 0.00 3.13
258 259 9.952030 TTCATGCTATAATTGTATTATCCGGAA 57.048 29.630 9.01 0.00 0.00 4.30
319 320 9.866655 TGCCCTAGAGACAATAATAAAATGATT 57.133 29.630 0.00 0.00 0.00 2.57
326 327 9.959721 GGAAATATGCCCTAGAGACAATAATAA 57.040 33.333 0.00 0.00 0.00 1.40
327 328 9.111519 TGGAAATATGCCCTAGAGACAATAATA 57.888 33.333 0.00 0.00 0.00 0.98
328 329 7.988937 TGGAAATATGCCCTAGAGACAATAAT 58.011 34.615 0.00 0.00 0.00 1.28
329 330 7.387265 TGGAAATATGCCCTAGAGACAATAA 57.613 36.000 0.00 0.00 0.00 1.40
330 331 7.387265 TTGGAAATATGCCCTAGAGACAATA 57.613 36.000 0.00 0.00 0.00 1.90
331 332 5.912149 TGGAAATATGCCCTAGAGACAAT 57.088 39.130 0.00 0.00 0.00 2.71
332 333 5.708736 TTGGAAATATGCCCTAGAGACAA 57.291 39.130 0.00 0.00 0.00 3.18
333 334 5.912149 ATTGGAAATATGCCCTAGAGACA 57.088 39.130 0.00 0.00 0.00 3.41
334 335 5.877564 GCTATTGGAAATATGCCCTAGAGAC 59.122 44.000 0.00 0.00 0.00 3.36
335 336 5.547666 TGCTATTGGAAATATGCCCTAGAGA 59.452 40.000 0.00 0.00 0.00 3.10
336 337 5.809001 TGCTATTGGAAATATGCCCTAGAG 58.191 41.667 0.00 0.00 0.00 2.43
337 338 5.841267 TGCTATTGGAAATATGCCCTAGA 57.159 39.130 0.00 0.00 0.00 2.43
338 339 6.421485 AGATGCTATTGGAAATATGCCCTAG 58.579 40.000 0.00 0.00 0.00 3.02
339 340 6.392911 AGATGCTATTGGAAATATGCCCTA 57.607 37.500 0.00 0.00 0.00 3.53
340 341 5.266709 AGATGCTATTGGAAATATGCCCT 57.733 39.130 0.00 0.00 0.00 5.19
341 342 5.477984 TGAAGATGCTATTGGAAATATGCCC 59.522 40.000 0.00 0.00 0.00 5.36
342 343 6.579666 TGAAGATGCTATTGGAAATATGCC 57.420 37.500 0.00 0.00 0.00 4.40
343 344 8.301720 TGAATGAAGATGCTATTGGAAATATGC 58.698 33.333 0.00 0.00 0.00 3.14
344 345 9.841880 CTGAATGAAGATGCTATTGGAAATATG 57.158 33.333 0.00 0.00 0.00 1.78
345 346 9.021807 CCTGAATGAAGATGCTATTGGAAATAT 57.978 33.333 0.00 0.00 0.00 1.28
346 347 8.219868 TCCTGAATGAAGATGCTATTGGAAATA 58.780 33.333 0.00 0.00 0.00 1.40
347 348 7.014038 GTCCTGAATGAAGATGCTATTGGAAAT 59.986 37.037 0.00 0.00 0.00 2.17
348 349 6.319658 GTCCTGAATGAAGATGCTATTGGAAA 59.680 38.462 0.00 0.00 0.00 3.13
349 350 5.824624 GTCCTGAATGAAGATGCTATTGGAA 59.175 40.000 0.00 0.00 0.00 3.53
350 351 5.371526 GTCCTGAATGAAGATGCTATTGGA 58.628 41.667 0.00 0.00 0.00 3.53
351 352 4.518211 GGTCCTGAATGAAGATGCTATTGG 59.482 45.833 0.00 0.00 0.00 3.16
352 353 5.008415 GTGGTCCTGAATGAAGATGCTATTG 59.992 44.000 0.00 0.00 0.00 1.90
353 354 5.128919 GTGGTCCTGAATGAAGATGCTATT 58.871 41.667 0.00 0.00 0.00 1.73
354 355 4.164796 TGTGGTCCTGAATGAAGATGCTAT 59.835 41.667 0.00 0.00 0.00 2.97
355 356 3.519107 TGTGGTCCTGAATGAAGATGCTA 59.481 43.478 0.00 0.00 0.00 3.49
356 357 2.306805 TGTGGTCCTGAATGAAGATGCT 59.693 45.455 0.00 0.00 0.00 3.79
357 358 2.715046 TGTGGTCCTGAATGAAGATGC 58.285 47.619 0.00 0.00 0.00 3.91
358 359 3.128242 GCTTGTGGTCCTGAATGAAGATG 59.872 47.826 0.00 0.00 0.00 2.90
359 360 3.245016 TGCTTGTGGTCCTGAATGAAGAT 60.245 43.478 0.00 0.00 0.00 2.40
360 361 2.106338 TGCTTGTGGTCCTGAATGAAGA 59.894 45.455 0.00 0.00 0.00 2.87
361 362 2.507484 TGCTTGTGGTCCTGAATGAAG 58.493 47.619 0.00 0.00 0.00 3.02
362 363 2.655090 TGCTTGTGGTCCTGAATGAA 57.345 45.000 0.00 0.00 0.00 2.57
363 364 2.655090 TTGCTTGTGGTCCTGAATGA 57.345 45.000 0.00 0.00 0.00 2.57
364 365 2.886523 TCTTTGCTTGTGGTCCTGAATG 59.113 45.455 0.00 0.00 0.00 2.67
365 366 2.887152 GTCTTTGCTTGTGGTCCTGAAT 59.113 45.455 0.00 0.00 0.00 2.57
366 367 2.297701 GTCTTTGCTTGTGGTCCTGAA 58.702 47.619 0.00 0.00 0.00 3.02
367 368 1.211703 TGTCTTTGCTTGTGGTCCTGA 59.788 47.619 0.00 0.00 0.00 3.86
368 369 1.605710 CTGTCTTTGCTTGTGGTCCTG 59.394 52.381 0.00 0.00 0.00 3.86
369 370 1.212935 ACTGTCTTTGCTTGTGGTCCT 59.787 47.619 0.00 0.00 0.00 3.85
370 371 1.680338 ACTGTCTTTGCTTGTGGTCC 58.320 50.000 0.00 0.00 0.00 4.46
371 372 5.215160 CAATAACTGTCTTTGCTTGTGGTC 58.785 41.667 0.00 0.00 0.00 4.02
372 373 4.644685 ACAATAACTGTCTTTGCTTGTGGT 59.355 37.500 3.43 0.00 29.87 4.16
373 374 4.977963 CACAATAACTGTCTTTGCTTGTGG 59.022 41.667 0.00 0.00 38.70 4.17
374 375 5.581605 ACACAATAACTGTCTTTGCTTGTG 58.418 37.500 10.09 10.09 44.52 3.33
375 376 5.835113 ACACAATAACTGTCTTTGCTTGT 57.165 34.783 3.43 0.00 35.47 3.16
376 377 7.023575 GGATACACAATAACTGTCTTTGCTTG 58.976 38.462 3.43 0.00 35.47 4.01
377 378 6.942576 AGGATACACAATAACTGTCTTTGCTT 59.057 34.615 3.43 0.00 35.47 3.91
378 379 6.476378 AGGATACACAATAACTGTCTTTGCT 58.524 36.000 3.43 0.00 35.47 3.91
379 380 6.371548 TGAGGATACACAATAACTGTCTTTGC 59.628 38.462 3.43 0.00 35.47 3.68
380 381 7.604164 AGTGAGGATACACAATAACTGTCTTTG 59.396 37.037 0.00 2.27 42.45 2.77
381 382 7.680730 AGTGAGGATACACAATAACTGTCTTT 58.319 34.615 0.00 0.00 42.45 2.52
382 383 7.246171 AGTGAGGATACACAATAACTGTCTT 57.754 36.000 0.00 0.00 42.45 3.01
383 384 6.859112 AGTGAGGATACACAATAACTGTCT 57.141 37.500 0.00 0.00 42.45 3.41
441 442 9.853555 GAACATTATCCAAAATACATGTTGTCA 57.146 29.630 2.30 0.00 35.50 3.58
442 443 9.853555 TGAACATTATCCAAAATACATGTTGTC 57.146 29.630 2.30 0.00 35.50 3.18
443 444 9.859427 CTGAACATTATCCAAAATACATGTTGT 57.141 29.630 2.30 0.00 35.50 3.32
444 445 8.810427 GCTGAACATTATCCAAAATACATGTTG 58.190 33.333 2.30 0.00 35.50 3.33
445 446 7.701924 CGCTGAACATTATCCAAAATACATGTT 59.298 33.333 2.30 0.00 37.52 2.71
446 447 7.148086 ACGCTGAACATTATCCAAAATACATGT 60.148 33.333 2.69 2.69 0.00 3.21
447 448 7.166307 CACGCTGAACATTATCCAAAATACATG 59.834 37.037 0.00 0.00 0.00 3.21
448 449 7.066887 TCACGCTGAACATTATCCAAAATACAT 59.933 33.333 0.00 0.00 0.00 2.29
449 450 6.372937 TCACGCTGAACATTATCCAAAATACA 59.627 34.615 0.00 0.00 0.00 2.29
450 451 6.781138 TCACGCTGAACATTATCCAAAATAC 58.219 36.000 0.00 0.00 0.00 1.89
451 452 6.993786 TCACGCTGAACATTATCCAAAATA 57.006 33.333 0.00 0.00 0.00 1.40
452 453 5.895636 TCACGCTGAACATTATCCAAAAT 57.104 34.783 0.00 0.00 0.00 1.82
453 454 5.895636 ATCACGCTGAACATTATCCAAAA 57.104 34.783 0.00 0.00 0.00 2.44
454 455 5.895636 AATCACGCTGAACATTATCCAAA 57.104 34.783 0.00 0.00 0.00 3.28
455 456 5.895636 AAATCACGCTGAACATTATCCAA 57.104 34.783 0.00 0.00 0.00 3.53
456 457 5.895636 AAAATCACGCTGAACATTATCCA 57.104 34.783 0.00 0.00 0.00 3.41
457 458 7.246674 TCTAAAATCACGCTGAACATTATCC 57.753 36.000 0.00 0.00 0.00 2.59
458 459 9.554724 TTTTCTAAAATCACGCTGAACATTATC 57.445 29.630 0.00 0.00 0.00 1.75
459 460 9.906660 TTTTTCTAAAATCACGCTGAACATTAT 57.093 25.926 0.00 0.00 0.00 1.28
496 497 9.621629 CAGTAGTTGGGTGTATAATTGGATAAA 57.378 33.333 0.00 0.00 0.00 1.40
497 498 8.994500 TCAGTAGTTGGGTGTATAATTGGATAA 58.006 33.333 0.00 0.00 0.00 1.75
498 499 8.555896 TCAGTAGTTGGGTGTATAATTGGATA 57.444 34.615 0.00 0.00 0.00 2.59
499 500 7.446106 TCAGTAGTTGGGTGTATAATTGGAT 57.554 36.000 0.00 0.00 0.00 3.41
500 501 6.877668 TCAGTAGTTGGGTGTATAATTGGA 57.122 37.500 0.00 0.00 0.00 3.53
501 502 8.519799 AAATCAGTAGTTGGGTGTATAATTGG 57.480 34.615 0.00 0.00 0.00 3.16
507 508 9.975218 AGAATAAAAATCAGTAGTTGGGTGTAT 57.025 29.630 0.00 0.00 0.00 2.29
508 509 9.802039 AAGAATAAAAATCAGTAGTTGGGTGTA 57.198 29.630 0.00 0.00 0.00 2.90
509 510 8.706322 AAGAATAAAAATCAGTAGTTGGGTGT 57.294 30.769 0.00 0.00 0.00 4.16
530 531 9.857957 AAACACGTACTTTTGGAAATTAAAGAA 57.142 25.926 5.62 0.00 0.00 2.52
537 538 9.251792 GGAAAATAAACACGTACTTTTGGAAAT 57.748 29.630 0.00 0.00 0.00 2.17
538 539 7.705752 GGGAAAATAAACACGTACTTTTGGAAA 59.294 33.333 0.00 0.00 0.00 3.13
539 540 7.068470 AGGGAAAATAAACACGTACTTTTGGAA 59.932 33.333 0.00 0.00 0.00 3.53
540 541 6.546772 AGGGAAAATAAACACGTACTTTTGGA 59.453 34.615 0.00 0.00 0.00 3.53
541 542 6.741109 AGGGAAAATAAACACGTACTTTTGG 58.259 36.000 0.00 0.00 0.00 3.28
542 543 8.637281 AAAGGGAAAATAAACACGTACTTTTG 57.363 30.769 0.00 0.00 0.00 2.44
546 547 9.734620 GTTTAAAAGGGAAAATAAACACGTACT 57.265 29.630 0.00 0.00 37.88 2.73
547 548 9.734620 AGTTTAAAAGGGAAAATAAACACGTAC 57.265 29.630 9.20 0.00 39.52 3.67
549 550 9.656040 AAAGTTTAAAAGGGAAAATAAACACGT 57.344 25.926 9.20 0.00 39.52 4.49
616 617 8.283992 CGGATACCACGCAAAATAAATTATGTA 58.716 33.333 0.00 0.00 0.00 2.29
617 618 7.136119 CGGATACCACGCAAAATAAATTATGT 58.864 34.615 0.00 0.00 0.00 2.29
618 619 7.136119 ACGGATACCACGCAAAATAAATTATG 58.864 34.615 0.00 0.00 34.00 1.90
619 620 7.266922 ACGGATACCACGCAAAATAAATTAT 57.733 32.000 0.00 0.00 34.00 1.28
620 621 6.680874 ACGGATACCACGCAAAATAAATTA 57.319 33.333 0.00 0.00 34.00 1.40
621 622 5.570234 ACGGATACCACGCAAAATAAATT 57.430 34.783 0.00 0.00 34.00 1.82
622 623 5.336744 CAACGGATACCACGCAAAATAAAT 58.663 37.500 0.00 0.00 34.00 1.40
623 624 4.379603 CCAACGGATACCACGCAAAATAAA 60.380 41.667 0.00 0.00 34.00 1.40
624 625 3.127203 CCAACGGATACCACGCAAAATAA 59.873 43.478 0.00 0.00 34.00 1.40
625 626 2.678836 CCAACGGATACCACGCAAAATA 59.321 45.455 0.00 0.00 34.00 1.40
626 627 1.470890 CCAACGGATACCACGCAAAAT 59.529 47.619 0.00 0.00 34.00 1.82
627 628 0.875728 CCAACGGATACCACGCAAAA 59.124 50.000 0.00 0.00 34.00 2.44
628 629 0.250381 ACCAACGGATACCACGCAAA 60.250 50.000 0.00 0.00 34.00 3.68
629 630 0.250381 AACCAACGGATACCACGCAA 60.250 50.000 0.00 0.00 34.00 4.85
633 634 2.285977 GGATCAACCAACGGATACCAC 58.714 52.381 0.00 0.00 38.79 4.16
658 659 4.261489 GCAAATGATGAATCGAGCCTGATT 60.261 41.667 0.93 0.93 41.16 2.57
661 662 2.287427 GGCAAATGATGAATCGAGCCTG 60.287 50.000 0.00 0.00 37.89 4.85
718 728 6.649436 CAAGCTATAGATTTTCGATCGCAAA 58.351 36.000 15.02 15.02 0.00 3.68
720 730 4.150627 GCAAGCTATAGATTTTCGATCGCA 59.849 41.667 11.09 0.00 0.00 5.10
886 920 3.005684 TGGTTTCATTGAATCACTGTGCC 59.994 43.478 2.12 3.15 0.00 5.01
900 938 1.282157 GGACTGGGTAGCTGGTTTCAT 59.718 52.381 0.00 0.00 0.00 2.57
915 953 4.665212 TGTTTAATACGACTAGCGGACTG 58.335 43.478 10.53 0.00 46.49 3.51
981 1024 1.751927 GGTGGCTTATGCTGCTGCT 60.752 57.895 17.00 5.09 40.48 4.24
1006 1075 4.002982 GTGAGAGGATGTTGTTATGTGCA 58.997 43.478 0.00 0.00 0.00 4.57
1013 1082 5.227569 TGTATGTGTGAGAGGATGTTGTT 57.772 39.130 0.00 0.00 0.00 2.83
1042 1126 2.221169 CTCGATCTCTCTGGACTCTGG 58.779 57.143 0.00 0.00 0.00 3.86
1043 1127 1.603802 GCTCGATCTCTCTGGACTCTG 59.396 57.143 0.00 0.00 0.00 3.35
1044 1128 1.810031 CGCTCGATCTCTCTGGACTCT 60.810 57.143 0.00 0.00 0.00 3.24
1045 1129 0.586319 CGCTCGATCTCTCTGGACTC 59.414 60.000 0.00 0.00 0.00 3.36
1046 1130 0.817634 CCGCTCGATCTCTCTGGACT 60.818 60.000 0.00 0.00 0.00 3.85
1047 1131 0.816018 TCCGCTCGATCTCTCTGGAC 60.816 60.000 0.00 0.00 0.00 4.02
1048 1132 0.109532 ATCCGCTCGATCTCTCTGGA 59.890 55.000 0.00 0.00 0.00 3.86
1049 1133 0.521291 GATCCGCTCGATCTCTCTGG 59.479 60.000 3.96 0.00 43.65 3.86
1491 2059 3.296709 CTAGGGACGCGTTGCAGGT 62.297 63.158 15.53 0.00 0.00 4.00
1532 2100 1.071987 CAGGAGCTGAACTGGTGCA 59.928 57.895 0.00 0.00 32.44 4.57
1573 2141 3.687321 CTACCGCTGCCACTGCCAT 62.687 63.158 0.00 0.00 36.33 4.40
1574 2142 4.393155 CTACCGCTGCCACTGCCA 62.393 66.667 0.00 0.00 36.33 4.92
1655 2229 4.523083 GGATAATATTAAGGATGCCGCCA 58.477 43.478 0.00 0.00 0.00 5.69
1670 2244 3.009033 CGGAGAAGGGCAATGGGATAATA 59.991 47.826 0.00 0.00 0.00 0.98
1673 2247 0.764890 CGGAGAAGGGCAATGGGATA 59.235 55.000 0.00 0.00 0.00 2.59
1730 2306 7.903995 TTATTTATTTAGGTCCGTCGTGTTT 57.096 32.000 0.00 0.00 0.00 2.83
1732 2308 9.034544 GTATTTATTTATTTAGGTCCGTCGTGT 57.965 33.333 0.00 0.00 0.00 4.49
1733 2309 8.209869 CGTATTTATTTATTTAGGTCCGTCGTG 58.790 37.037 0.00 0.00 0.00 4.35
1734 2310 7.920682 ACGTATTTATTTATTTAGGTCCGTCGT 59.079 33.333 0.00 0.00 0.00 4.34
1735 2311 8.209869 CACGTATTTATTTATTTAGGTCCGTCG 58.790 37.037 0.00 0.00 0.00 5.12
1792 2380 7.506328 AGATTTTACATAATAAAGCGGGGAC 57.494 36.000 0.00 0.00 0.00 4.46
1821 2654 3.749609 AGAAGCGGTAATACAAACCACAC 59.250 43.478 0.00 0.00 36.78 3.82
1828 2662 5.579511 GTGCTTCTTAGAAGCGGTAATACAA 59.420 40.000 32.89 15.72 45.80 2.41
1872 2706 9.854668 ATGATACACACTCAGAGTACTACTATT 57.145 33.333 1.67 0.00 0.00 1.73
1873 2707 9.278978 CATGATACACACTCAGAGTACTACTAT 57.721 37.037 1.67 0.00 0.00 2.12
1874 2708 8.265764 ACATGATACACACTCAGAGTACTACTA 58.734 37.037 1.67 0.00 0.00 1.82
1875 2709 7.066404 CACATGATACACACTCAGAGTACTACT 59.934 40.741 1.67 0.00 0.00 2.57
1879 2716 6.196079 TCACATGATACACACTCAGAGTAC 57.804 41.667 1.67 0.00 0.00 2.73
1911 2748 6.314400 AGACGTAGCTTTACTTTTCACAAACA 59.686 34.615 0.00 0.00 0.00 2.83
1923 2760 9.119329 CATATAGAATCACAGACGTAGCTTTAC 57.881 37.037 0.00 0.00 0.00 2.01
1970 2810 5.273674 TGAGCCAATCACAATGTCAAAAA 57.726 34.783 0.00 0.00 31.12 1.94
2038 2893 4.880164 AGGGTGAGCCTCTAGTAATACAA 58.120 43.478 0.00 0.00 34.45 2.41
2060 2915 1.006337 GAATGGTGCCGCAAAGCAA 60.006 52.632 0.00 0.00 46.19 3.91
2072 2927 2.768253 TCGCATGAGTGAAGAATGGT 57.232 45.000 0.00 0.00 0.00 3.55
2117 2973 5.335976 GCCAAACAAAACAATCAACCCAAAA 60.336 36.000 0.00 0.00 0.00 2.44
2121 2977 3.540617 AGCCAAACAAAACAATCAACCC 58.459 40.909 0.00 0.00 0.00 4.11
2181 3038 3.607310 CGCACGGTATACAAAAACTGCAA 60.607 43.478 5.01 0.00 0.00 4.08
2197 3061 2.356313 AACAGCAGTCTCGCACGG 60.356 61.111 0.00 0.00 0.00 4.94
2203 3067 1.342819 AGTGTCTCCAACAGCAGTCTC 59.657 52.381 0.00 0.00 38.97 3.36
2282 3146 2.093306 TGCTTACACCAAGACCGATG 57.907 50.000 0.00 0.00 36.22 3.84
2283 3147 2.851263 TTGCTTACACCAAGACCGAT 57.149 45.000 0.00 0.00 36.22 4.18
2302 3166 0.320771 GAGCTCACACCGTCACCATT 60.321 55.000 9.40 0.00 0.00 3.16
2310 3174 5.126396 TCATAGAATATGAGCTCACACCG 57.874 43.478 20.97 2.61 0.00 4.94
2311 3175 6.695429 TCATCATAGAATATGAGCTCACACC 58.305 40.000 20.97 8.77 0.00 4.16
2315 3190 8.309656 ACGATTTCATCATAGAATATGAGCTCA 58.690 33.333 20.79 20.79 33.83 4.26
2330 3205 6.103330 TCGAACCAATTCTACGATTTCATCA 58.897 36.000 0.00 0.00 32.12 3.07
2332 3207 8.548721 GTTATCGAACCAATTCTACGATTTCAT 58.451 33.333 0.00 0.00 42.29 2.57
2351 3226 2.102749 CGGCCCGAACGTTATCGA 59.897 61.111 11.09 0.00 45.48 3.59
2366 3241 1.372087 GCAAGAGCTTCATGGGACGG 61.372 60.000 0.00 0.00 37.91 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.