Multiple sequence alignment - TraesCS2A01G484300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G484300 chr2A 100.000 2192 0 0 1 2192 719542206 719540015 0.000000e+00 4048
1 TraesCS2A01G484300 chr2A 87.033 1257 154 8 929 2178 38309323 38310577 0.000000e+00 1410
2 TraesCS2A01G484300 chr2A 85.096 1201 162 15 969 2153 478762808 478761609 0.000000e+00 1210
3 TraesCS2A01G484300 chr2B 94.233 1734 86 11 467 2192 706418942 706417215 0.000000e+00 2636
4 TraesCS2A01G484300 chr2B 87.022 1256 156 6 929 2178 57664553 57665807 0.000000e+00 1410
5 TraesCS2A01G484300 chr2B 85.292 1251 175 7 929 2172 57672606 57673854 0.000000e+00 1282
6 TraesCS2A01G484300 chr2B 85.012 1201 163 13 969 2153 425353456 425352257 0.000000e+00 1205
7 TraesCS2A01G484300 chr2D 89.717 1731 150 11 467 2189 585477595 585475885 0.000000e+00 2185
8 TraesCS2A01G484300 chr2D 89.047 1333 138 6 855 2182 585517487 585516158 0.000000e+00 1646
9 TraesCS2A01G484300 chr2D 85.691 1251 170 7 929 2172 34994803 34996051 0.000000e+00 1310
10 TraesCS2A01G484300 chr2D 96.196 184 7 0 284 467 274131281 274131464 3.540000e-78 302
11 TraesCS2A01G484300 chr2D 95.676 185 8 0 284 468 298511596 298511780 4.570000e-77 298
12 TraesCS2A01G484300 chr2D 95.135 185 9 0 284 468 85864673 85864857 2.130000e-75 292
13 TraesCS2A01G484300 chr2D 87.755 196 21 3 273 467 194371196 194371389 2.190000e-55 226
14 TraesCS2A01G484300 chr2D 87.245 196 22 3 273 467 194362265 194362458 1.020000e-53 220
15 TraesCS2A01G484300 chr7A 95.789 285 10 2 1 283 217175694 217175978 1.980000e-125 459
16 TraesCS2A01G484300 chr1D 95.105 286 12 1 1 284 287148868 287148583 1.190000e-122 449
17 TraesCS2A01G484300 chr1D 95.088 285 12 1 1 283 229462657 229462373 4.290000e-122 448
18 TraesCS2A01G484300 chr1D 94.737 285 12 2 1 283 252032862 252033145 7.180000e-120 440
19 TraesCS2A01G484300 chr7D 95.088 285 12 1 1 283 34133550 34133834 4.290000e-122 448
20 TraesCS2A01G484300 chr7D 95.652 184 8 0 284 467 383347925 383348108 1.650000e-76 296
21 TraesCS2A01G484300 chr7D 95.109 184 9 0 284 467 509361195 509361012 7.660000e-75 291
22 TraesCS2A01G484300 chr3A 94.792 288 13 1 1 286 632591791 632591504 4.290000e-122 448
23 TraesCS2A01G484300 chr3A 94.755 286 13 2 1 284 158462186 158461901 5.550000e-121 444
24 TraesCS2A01G484300 chr3A 94.737 285 13 2 1 283 117907504 117907220 2.000000e-120 442
25 TraesCS2A01G484300 chr6A 94.386 285 14 2 1 283 2484371 2484087 9.290000e-119 436
26 TraesCS2A01G484300 chr5A 95.652 184 8 0 284 467 286188106 286188289 1.650000e-76 296
27 TraesCS2A01G484300 chr4A 95.652 184 8 0 284 467 91343550 91343367 1.650000e-76 296
28 TraesCS2A01G484300 chr5B 95.135 185 9 0 284 468 276304780 276304596 2.130000e-75 292
29 TraesCS2A01G484300 chr3D 95.109 184 9 0 284 467 303282198 303282015 7.660000e-75 291


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G484300 chr2A 719540015 719542206 2191 True 4048 4048 100.000 1 2192 1 chr2A.!!$R2 2191
1 TraesCS2A01G484300 chr2A 38309323 38310577 1254 False 1410 1410 87.033 929 2178 1 chr2A.!!$F1 1249
2 TraesCS2A01G484300 chr2A 478761609 478762808 1199 True 1210 1210 85.096 969 2153 1 chr2A.!!$R1 1184
3 TraesCS2A01G484300 chr2B 706417215 706418942 1727 True 2636 2636 94.233 467 2192 1 chr2B.!!$R2 1725
4 TraesCS2A01G484300 chr2B 57664553 57665807 1254 False 1410 1410 87.022 929 2178 1 chr2B.!!$F1 1249
5 TraesCS2A01G484300 chr2B 57672606 57673854 1248 False 1282 1282 85.292 929 2172 1 chr2B.!!$F2 1243
6 TraesCS2A01G484300 chr2B 425352257 425353456 1199 True 1205 1205 85.012 969 2153 1 chr2B.!!$R1 1184
7 TraesCS2A01G484300 chr2D 585475885 585477595 1710 True 2185 2185 89.717 467 2189 1 chr2D.!!$R1 1722
8 TraesCS2A01G484300 chr2D 585516158 585517487 1329 True 1646 1646 89.047 855 2182 1 chr2D.!!$R2 1327
9 TraesCS2A01G484300 chr2D 34994803 34996051 1248 False 1310 1310 85.691 929 2172 1 chr2D.!!$F1 1243

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 202 0.03779 AGCGTGGTCTTCTGAAGCTC 60.038 55.0 12.54 7.96 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1670 1676 0.605319 CGGCCTAACAAACTGGAGCA 60.605 55.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.963318 TGCAAGAGGGGATGATACTTAG 57.037 45.455 0.00 0.00 0.00 2.18
23 24 3.071602 TGCAAGAGGGGATGATACTTAGC 59.928 47.826 0.00 0.00 0.00 3.09
24 25 3.071602 GCAAGAGGGGATGATACTTAGCA 59.928 47.826 0.00 0.00 0.00 3.49
25 26 4.802248 GCAAGAGGGGATGATACTTAGCAG 60.802 50.000 0.00 0.00 0.00 4.24
26 27 2.903135 AGAGGGGATGATACTTAGCAGC 59.097 50.000 0.00 0.00 0.00 5.25
27 28 2.634940 GAGGGGATGATACTTAGCAGCA 59.365 50.000 0.00 0.00 28.16 4.41
28 29 2.636893 AGGGGATGATACTTAGCAGCAG 59.363 50.000 0.00 0.00 28.16 4.24
29 30 2.421619 GGGATGATACTTAGCAGCAGC 58.578 52.381 0.00 0.00 42.56 5.25
40 41 3.549997 GCAGCAGCGAGTTTTGAAA 57.450 47.368 0.00 0.00 0.00 2.69
41 42 1.838913 GCAGCAGCGAGTTTTGAAAA 58.161 45.000 0.00 0.00 0.00 2.29
42 43 2.192624 GCAGCAGCGAGTTTTGAAAAA 58.807 42.857 0.00 0.00 0.00 1.94
65 66 7.541122 AAATGCTGCTACTAAGTACTTTAGC 57.459 36.000 23.67 23.67 42.12 3.09
66 67 5.654603 TGCTGCTACTAAGTACTTTAGCA 57.345 39.130 28.05 28.05 43.60 3.49
71 72 6.793349 TGCTACTAAGTACTTTAGCAGTAGC 58.207 40.000 35.45 35.45 41.52 3.58
81 82 4.129737 GCAGTAGCGCGTCCAGGA 62.130 66.667 8.43 0.00 0.00 3.86
82 83 2.103143 CAGTAGCGCGTCCAGGAG 59.897 66.667 8.43 0.00 0.00 3.69
83 84 2.045242 AGTAGCGCGTCCAGGAGA 60.045 61.111 8.43 0.00 0.00 3.71
84 85 1.677966 AGTAGCGCGTCCAGGAGAA 60.678 57.895 8.43 0.00 0.00 2.87
85 86 1.226717 GTAGCGCGTCCAGGAGAAG 60.227 63.158 8.43 0.00 0.00 2.85
86 87 2.415608 TAGCGCGTCCAGGAGAAGG 61.416 63.158 8.43 0.00 0.00 3.46
87 88 4.821589 GCGCGTCCAGGAGAAGGG 62.822 72.222 8.43 0.00 39.44 3.95
88 89 4.821589 CGCGTCCAGGAGAAGGGC 62.822 72.222 0.00 0.00 30.72 5.19
91 92 3.394836 GTCCAGGAGAAGGGCGCT 61.395 66.667 7.64 0.00 0.00 5.92
92 93 2.058595 GTCCAGGAGAAGGGCGCTA 61.059 63.158 7.64 0.00 0.00 4.26
93 94 2.058595 TCCAGGAGAAGGGCGCTAC 61.059 63.158 7.64 0.00 0.00 3.58
94 95 2.060980 CCAGGAGAAGGGCGCTACT 61.061 63.158 7.64 2.81 0.00 2.57
95 96 0.755698 CCAGGAGAAGGGCGCTACTA 60.756 60.000 7.64 0.00 0.00 1.82
96 97 0.386113 CAGGAGAAGGGCGCTACTAC 59.614 60.000 7.64 2.51 0.00 2.73
97 98 0.259356 AGGAGAAGGGCGCTACTACT 59.741 55.000 7.64 4.98 0.00 2.57
98 99 1.493871 AGGAGAAGGGCGCTACTACTA 59.506 52.381 7.64 0.00 0.00 1.82
99 100 2.108601 AGGAGAAGGGCGCTACTACTAT 59.891 50.000 7.64 0.00 0.00 2.12
100 101 3.330110 AGGAGAAGGGCGCTACTACTATA 59.670 47.826 7.64 0.00 0.00 1.31
101 102 4.018233 AGGAGAAGGGCGCTACTACTATAT 60.018 45.833 7.64 0.00 0.00 0.86
102 103 4.336153 GGAGAAGGGCGCTACTACTATATC 59.664 50.000 7.64 0.00 0.00 1.63
103 104 5.182169 AGAAGGGCGCTACTACTATATCT 57.818 43.478 7.64 2.09 0.00 1.98
104 105 6.310764 AGAAGGGCGCTACTACTATATCTA 57.689 41.667 7.64 0.00 0.00 1.98
105 106 6.350906 AGAAGGGCGCTACTACTATATCTAG 58.649 44.000 7.64 0.00 0.00 2.43
106 107 4.453751 AGGGCGCTACTACTATATCTAGC 58.546 47.826 7.64 0.00 0.00 3.42
107 108 3.565063 GGGCGCTACTACTATATCTAGCC 59.435 52.174 7.64 0.00 40.04 3.93
108 109 4.453751 GGCGCTACTACTATATCTAGCCT 58.546 47.826 7.64 0.00 37.97 4.58
109 110 4.273969 GGCGCTACTACTATATCTAGCCTG 59.726 50.000 7.64 0.00 37.97 4.85
110 111 5.117584 GCGCTACTACTATATCTAGCCTGA 58.882 45.833 0.00 0.00 0.00 3.86
111 112 5.585445 GCGCTACTACTATATCTAGCCTGAA 59.415 44.000 0.00 0.00 0.00 3.02
112 113 6.238266 GCGCTACTACTATATCTAGCCTGAAG 60.238 46.154 0.00 0.00 0.00 3.02
113 114 6.259167 CGCTACTACTATATCTAGCCTGAAGG 59.741 46.154 0.00 0.00 38.53 3.46
123 124 3.343972 CCTGAAGGCAACACCGTG 58.656 61.111 0.00 0.00 46.52 4.94
124 125 2.260869 CCTGAAGGCAACACCGTGG 61.261 63.158 3.03 0.00 46.52 4.94
125 126 2.904866 TGAAGGCAACACCGTGGC 60.905 61.111 3.03 0.00 46.52 5.01
126 127 2.904866 GAAGGCAACACCGTGGCA 60.905 61.111 3.03 0.00 46.15 4.92
127 128 2.441164 AAGGCAACACCGTGGCAA 60.441 55.556 3.03 0.00 46.15 4.52
128 129 1.805428 GAAGGCAACACCGTGGCAAT 61.805 55.000 3.03 0.00 46.15 3.56
129 130 1.398958 AAGGCAACACCGTGGCAATT 61.399 50.000 3.03 0.00 46.15 2.32
130 131 1.664333 GGCAACACCGTGGCAATTG 60.664 57.895 0.00 0.00 43.33 2.32
131 132 1.067250 GCAACACCGTGGCAATTGT 59.933 52.632 7.40 0.00 31.84 2.71
132 133 0.312416 GCAACACCGTGGCAATTGTA 59.688 50.000 7.40 0.00 31.84 2.41
133 134 1.665735 GCAACACCGTGGCAATTGTAG 60.666 52.381 7.40 0.00 31.84 2.74
134 135 1.606668 CAACACCGTGGCAATTGTAGT 59.393 47.619 7.40 0.00 0.00 2.73
135 136 2.809119 CAACACCGTGGCAATTGTAGTA 59.191 45.455 7.40 0.00 0.00 1.82
136 137 2.695359 ACACCGTGGCAATTGTAGTAG 58.305 47.619 7.40 0.00 0.00 2.57
137 138 2.038033 ACACCGTGGCAATTGTAGTAGT 59.962 45.455 7.40 0.00 0.00 2.73
138 139 3.258872 ACACCGTGGCAATTGTAGTAGTA 59.741 43.478 7.40 0.00 0.00 1.82
139 140 3.863424 CACCGTGGCAATTGTAGTAGTAG 59.137 47.826 7.40 0.00 0.00 2.57
140 141 2.864343 CCGTGGCAATTGTAGTAGTAGC 59.136 50.000 7.40 0.00 0.00 3.58
141 142 2.534349 CGTGGCAATTGTAGTAGTAGCG 59.466 50.000 7.40 0.00 0.00 4.26
142 143 2.284417 GTGGCAATTGTAGTAGTAGCGC 59.716 50.000 7.40 0.00 0.00 5.92
143 144 2.167693 TGGCAATTGTAGTAGTAGCGCT 59.832 45.455 17.26 17.26 0.00 5.92
144 145 2.795470 GGCAATTGTAGTAGTAGCGCTC 59.205 50.000 16.34 5.88 0.00 5.03
145 146 2.468040 GCAATTGTAGTAGTAGCGCTCG 59.532 50.000 16.34 0.00 0.00 5.03
146 147 3.692576 CAATTGTAGTAGTAGCGCTCGT 58.307 45.455 16.34 4.58 0.00 4.18
147 148 4.103357 CAATTGTAGTAGTAGCGCTCGTT 58.897 43.478 16.34 2.81 0.00 3.85
148 149 3.837213 TTGTAGTAGTAGCGCTCGTTT 57.163 42.857 16.34 0.00 0.00 3.60
149 150 3.395858 TGTAGTAGTAGCGCTCGTTTC 57.604 47.619 16.34 1.91 0.00 2.78
150 151 2.743664 TGTAGTAGTAGCGCTCGTTTCA 59.256 45.455 16.34 3.20 0.00 2.69
151 152 2.259505 AGTAGTAGCGCTCGTTTCAC 57.740 50.000 16.34 5.14 0.00 3.18
152 153 1.135460 AGTAGTAGCGCTCGTTTCACC 60.135 52.381 16.34 0.00 0.00 4.02
153 154 1.135460 GTAGTAGCGCTCGTTTCACCT 60.135 52.381 16.34 0.53 0.00 4.00
154 155 1.171308 AGTAGCGCTCGTTTCACCTA 58.829 50.000 16.34 0.00 0.00 3.08
155 156 1.132643 AGTAGCGCTCGTTTCACCTAG 59.867 52.381 16.34 0.00 0.00 3.02
156 157 1.131883 GTAGCGCTCGTTTCACCTAGA 59.868 52.381 16.34 0.00 0.00 2.43
157 158 0.171455 AGCGCTCGTTTCACCTAGAG 59.829 55.000 2.64 0.00 0.00 2.43
158 159 0.109226 GCGCTCGTTTCACCTAGAGT 60.109 55.000 0.00 0.00 33.57 3.24
160 161 1.351153 GCTCGTTTCACCTAGAGTGC 58.649 55.000 6.51 0.00 46.81 4.40
161 162 1.067495 GCTCGTTTCACCTAGAGTGCT 60.067 52.381 6.51 0.00 46.81 4.40
162 163 2.163815 GCTCGTTTCACCTAGAGTGCTA 59.836 50.000 6.51 0.00 46.81 3.49
163 164 3.760537 CTCGTTTCACCTAGAGTGCTAC 58.239 50.000 6.51 6.23 46.81 3.58
164 165 3.418995 TCGTTTCACCTAGAGTGCTACT 58.581 45.455 6.51 0.00 46.81 2.57
165 166 3.190744 TCGTTTCACCTAGAGTGCTACTG 59.809 47.826 6.51 4.93 46.81 2.74
166 167 3.254892 GTTTCACCTAGAGTGCTACTGC 58.745 50.000 6.51 0.00 46.81 4.40
167 168 2.516227 TCACCTAGAGTGCTACTGCT 57.484 50.000 6.51 0.00 46.81 4.24
168 169 3.646736 TCACCTAGAGTGCTACTGCTA 57.353 47.619 6.51 0.00 46.81 3.49
169 170 3.280295 TCACCTAGAGTGCTACTGCTAC 58.720 50.000 6.51 0.00 46.81 3.58
170 171 3.054287 TCACCTAGAGTGCTACTGCTACT 60.054 47.826 6.51 0.00 46.81 2.57
171 172 3.066064 CACCTAGAGTGCTACTGCTACTG 59.934 52.174 0.00 0.00 40.28 2.74
172 173 2.621055 CCTAGAGTGCTACTGCTACTGG 59.379 54.545 0.00 0.00 40.48 4.00
173 174 1.479709 AGAGTGCTACTGCTACTGGG 58.520 55.000 0.00 0.00 40.48 4.45
174 175 0.179097 GAGTGCTACTGCTACTGGGC 60.179 60.000 0.00 0.00 40.48 5.36
175 176 0.616111 AGTGCTACTGCTACTGGGCT 60.616 55.000 0.00 0.00 40.48 5.19
176 177 1.112113 GTGCTACTGCTACTGGGCTA 58.888 55.000 0.00 0.00 40.48 3.93
177 178 1.689273 GTGCTACTGCTACTGGGCTAT 59.311 52.381 0.00 0.00 40.48 2.97
178 179 2.103263 GTGCTACTGCTACTGGGCTATT 59.897 50.000 0.00 0.00 40.48 1.73
179 180 3.321111 GTGCTACTGCTACTGGGCTATTA 59.679 47.826 0.00 0.00 40.48 0.98
180 181 3.574396 TGCTACTGCTACTGGGCTATTAG 59.426 47.826 0.00 0.00 40.48 1.73
181 182 3.574826 GCTACTGCTACTGGGCTATTAGT 59.425 47.826 0.00 0.00 36.03 2.24
182 183 4.765856 GCTACTGCTACTGGGCTATTAGTA 59.234 45.833 0.00 0.00 36.03 1.82
183 184 5.106078 GCTACTGCTACTGGGCTATTAGTAG 60.106 48.000 10.66 10.66 45.75 2.57
194 195 4.571372 GCTATTAGTAGCGTGGTCTTCT 57.429 45.455 1.06 0.00 43.49 2.85
195 196 4.291783 GCTATTAGTAGCGTGGTCTTCTG 58.708 47.826 1.06 0.00 43.49 3.02
196 197 4.036498 GCTATTAGTAGCGTGGTCTTCTGA 59.964 45.833 1.06 0.00 43.49 3.27
197 198 5.450137 GCTATTAGTAGCGTGGTCTTCTGAA 60.450 44.000 1.06 0.00 43.49 3.02
198 199 4.436242 TTAGTAGCGTGGTCTTCTGAAG 57.564 45.455 11.18 11.18 0.00 3.02
199 200 1.067495 AGTAGCGTGGTCTTCTGAAGC 60.067 52.381 12.54 7.74 0.00 3.86
200 201 1.067495 GTAGCGTGGTCTTCTGAAGCT 60.067 52.381 12.54 8.44 37.27 3.74
201 202 0.037790 AGCGTGGTCTTCTGAAGCTC 60.038 55.000 12.54 7.96 0.00 4.09
202 203 1.347817 GCGTGGTCTTCTGAAGCTCG 61.348 60.000 12.54 12.31 0.00 5.03
203 204 1.347817 CGTGGTCTTCTGAAGCTCGC 61.348 60.000 12.54 11.56 0.00 5.03
204 205 0.037790 GTGGTCTTCTGAAGCTCGCT 60.038 55.000 12.54 0.00 0.00 4.93
205 206 1.202582 GTGGTCTTCTGAAGCTCGCTA 59.797 52.381 12.54 0.00 0.00 4.26
206 207 1.202582 TGGTCTTCTGAAGCTCGCTAC 59.797 52.381 12.54 4.55 0.00 3.58
207 208 1.474879 GGTCTTCTGAAGCTCGCTACT 59.525 52.381 12.54 0.00 0.00 2.57
208 209 2.525055 GTCTTCTGAAGCTCGCTACTG 58.475 52.381 12.54 0.00 0.00 2.74
209 210 1.135257 TCTTCTGAAGCTCGCTACTGC 60.135 52.381 12.54 0.00 0.00 4.40
210 211 0.891373 TTCTGAAGCTCGCTACTGCT 59.109 50.000 0.00 0.00 41.82 4.24
211 212 1.751437 TCTGAAGCTCGCTACTGCTA 58.249 50.000 0.00 0.00 38.75 3.49
212 213 2.092323 TCTGAAGCTCGCTACTGCTAA 58.908 47.619 0.00 0.00 38.75 3.09
213 214 2.690497 TCTGAAGCTCGCTACTGCTAAT 59.310 45.455 0.00 0.00 38.75 1.73
214 215 3.131223 TCTGAAGCTCGCTACTGCTAATT 59.869 43.478 0.00 0.00 38.75 1.40
215 216 4.338400 TCTGAAGCTCGCTACTGCTAATTA 59.662 41.667 0.00 0.00 38.75 1.40
216 217 4.611943 TGAAGCTCGCTACTGCTAATTAG 58.388 43.478 8.20 8.20 38.75 1.73
238 239 5.305569 GCAGTAGCGTTTGTTTTTAAACC 57.694 39.130 3.13 0.00 37.27 3.27
239 240 5.038683 GCAGTAGCGTTTGTTTTTAAACCT 58.961 37.500 3.13 0.00 37.27 3.50
240 241 5.172591 GCAGTAGCGTTTGTTTTTAAACCTC 59.827 40.000 3.13 0.00 37.27 3.85
241 242 5.394322 CAGTAGCGTTTGTTTTTAAACCTCG 59.606 40.000 3.13 6.32 37.27 4.63
242 243 3.110358 AGCGTTTGTTTTTAAACCTCGC 58.890 40.909 20.11 20.11 43.77 5.03
243 244 3.110358 GCGTTTGTTTTTAAACCTCGCT 58.890 40.909 20.27 0.00 42.15 4.93
244 245 4.281264 GCGTTTGTTTTTAAACCTCGCTA 58.719 39.130 20.27 0.00 42.15 4.26
245 246 4.145243 GCGTTTGTTTTTAAACCTCGCTAC 59.855 41.667 20.27 5.70 42.15 3.58
246 247 5.504392 CGTTTGTTTTTAAACCTCGCTACT 58.496 37.500 3.13 0.00 37.27 2.57
247 248 5.394322 CGTTTGTTTTTAAACCTCGCTACTG 59.606 40.000 3.13 0.00 37.27 2.74
248 249 4.477302 TGTTTTTAAACCTCGCTACTGC 57.523 40.909 3.13 0.00 38.11 4.40
249 250 4.131596 TGTTTTTAAACCTCGCTACTGCT 58.868 39.130 3.13 0.00 38.11 4.24
250 251 5.299148 TGTTTTTAAACCTCGCTACTGCTA 58.701 37.500 3.13 0.00 38.11 3.49
251 252 5.759273 TGTTTTTAAACCTCGCTACTGCTAA 59.241 36.000 3.13 0.00 38.11 3.09
252 253 6.073440 TGTTTTTAAACCTCGCTACTGCTAAG 60.073 38.462 3.13 0.00 38.11 2.18
253 254 5.395682 TTTAAACCTCGCTACTGCTAAGA 57.604 39.130 0.00 0.00 36.97 2.10
254 255 5.593679 TTAAACCTCGCTACTGCTAAGAT 57.406 39.130 0.00 0.00 36.97 2.40
255 256 4.473477 AAACCTCGCTACTGCTAAGATT 57.527 40.909 0.00 0.00 36.97 2.40
256 257 3.719173 ACCTCGCTACTGCTAAGATTC 57.281 47.619 0.00 0.00 36.97 2.52
257 258 3.292460 ACCTCGCTACTGCTAAGATTCT 58.708 45.455 0.00 0.00 36.97 2.40
258 259 3.067461 ACCTCGCTACTGCTAAGATTCTG 59.933 47.826 0.00 0.00 36.97 3.02
259 260 3.067461 CCTCGCTACTGCTAAGATTCTGT 59.933 47.826 0.00 0.00 36.97 3.41
260 261 4.033990 TCGCTACTGCTAAGATTCTGTG 57.966 45.455 0.00 0.00 36.97 3.66
261 262 3.444034 TCGCTACTGCTAAGATTCTGTGT 59.556 43.478 0.00 0.00 36.97 3.72
262 263 4.638865 TCGCTACTGCTAAGATTCTGTGTA 59.361 41.667 0.00 0.00 36.97 2.90
263 264 5.299531 TCGCTACTGCTAAGATTCTGTGTAT 59.700 40.000 0.00 0.00 36.97 2.29
264 265 6.485648 TCGCTACTGCTAAGATTCTGTGTATA 59.514 38.462 0.00 0.00 36.97 1.47
265 266 7.012989 TCGCTACTGCTAAGATTCTGTGTATAA 59.987 37.037 0.00 0.00 36.97 0.98
266 267 7.113684 CGCTACTGCTAAGATTCTGTGTATAAC 59.886 40.741 0.00 0.00 36.97 1.89
267 268 7.113684 GCTACTGCTAAGATTCTGTGTATAACG 59.886 40.741 0.00 0.00 36.03 3.18
268 269 6.864342 ACTGCTAAGATTCTGTGTATAACGT 58.136 36.000 0.00 0.00 0.00 3.99
269 270 7.321153 ACTGCTAAGATTCTGTGTATAACGTT 58.679 34.615 5.88 5.88 0.00 3.99
270 271 7.817962 ACTGCTAAGATTCTGTGTATAACGTTT 59.182 33.333 5.91 0.00 0.00 3.60
271 272 8.542497 TGCTAAGATTCTGTGTATAACGTTTT 57.458 30.769 5.91 0.02 0.00 2.43
272 273 8.653338 TGCTAAGATTCTGTGTATAACGTTTTC 58.347 33.333 5.91 0.00 0.00 2.29
273 274 8.114905 GCTAAGATTCTGTGTATAACGTTTTCC 58.885 37.037 5.91 0.00 0.00 3.13
274 275 6.980051 AGATTCTGTGTATAACGTTTTCCC 57.020 37.500 5.91 0.00 0.00 3.97
275 276 6.708285 AGATTCTGTGTATAACGTTTTCCCT 58.292 36.000 5.91 0.00 0.00 4.20
276 277 7.844009 AGATTCTGTGTATAACGTTTTCCCTA 58.156 34.615 5.91 0.00 0.00 3.53
277 278 7.980099 AGATTCTGTGTATAACGTTTTCCCTAG 59.020 37.037 5.91 0.00 0.00 3.02
278 279 6.594788 TCTGTGTATAACGTTTTCCCTAGT 57.405 37.500 5.91 0.00 0.00 2.57
279 280 7.701539 TCTGTGTATAACGTTTTCCCTAGTA 57.298 36.000 5.91 0.00 0.00 1.82
280 281 7.765307 TCTGTGTATAACGTTTTCCCTAGTAG 58.235 38.462 5.91 0.00 0.00 2.57
281 282 7.394359 TCTGTGTATAACGTTTTCCCTAGTAGT 59.606 37.037 5.91 0.00 0.00 2.73
282 283 7.315142 TGTGTATAACGTTTTCCCTAGTAGTG 58.685 38.462 5.91 0.00 0.00 2.74
283 284 7.176515 TGTGTATAACGTTTTCCCTAGTAGTGA 59.823 37.037 5.91 0.00 0.00 3.41
284 285 8.028938 GTGTATAACGTTTTCCCTAGTAGTGAA 58.971 37.037 5.91 0.00 0.00 3.18
285 286 8.028938 TGTATAACGTTTTCCCTAGTAGTGAAC 58.971 37.037 5.91 0.00 0.00 3.18
286 287 4.263018 ACGTTTTCCCTAGTAGTGAACC 57.737 45.455 0.00 0.00 0.00 3.62
287 288 3.007290 ACGTTTTCCCTAGTAGTGAACCC 59.993 47.826 0.00 0.00 0.00 4.11
288 289 3.618263 CGTTTTCCCTAGTAGTGAACCCC 60.618 52.174 0.00 0.00 0.00 4.95
289 290 3.572661 TTTCCCTAGTAGTGAACCCCT 57.427 47.619 0.00 0.00 0.00 4.79
290 291 3.572661 TTCCCTAGTAGTGAACCCCTT 57.427 47.619 0.00 0.00 0.00 3.95
291 292 3.572661 TCCCTAGTAGTGAACCCCTTT 57.427 47.619 0.00 0.00 0.00 3.11
292 293 4.697802 TCCCTAGTAGTGAACCCCTTTA 57.302 45.455 0.00 0.00 0.00 1.85
293 294 5.230746 TCCCTAGTAGTGAACCCCTTTAT 57.769 43.478 0.00 0.00 0.00 1.40
294 295 5.214293 TCCCTAGTAGTGAACCCCTTTATC 58.786 45.833 0.00 0.00 0.00 1.75
295 296 4.038883 CCCTAGTAGTGAACCCCTTTATCG 59.961 50.000 0.00 0.00 0.00 2.92
296 297 3.538634 AGTAGTGAACCCCTTTATCGC 57.461 47.619 0.00 0.00 0.00 4.58
297 298 2.835764 AGTAGTGAACCCCTTTATCGCA 59.164 45.455 0.00 0.00 0.00 5.10
298 299 3.454812 AGTAGTGAACCCCTTTATCGCAT 59.545 43.478 0.00 0.00 0.00 4.73
299 300 3.366052 AGTGAACCCCTTTATCGCATT 57.634 42.857 0.00 0.00 0.00 3.56
300 301 3.016736 AGTGAACCCCTTTATCGCATTG 58.983 45.455 0.00 0.00 0.00 2.82
301 302 2.099098 GTGAACCCCTTTATCGCATTGG 59.901 50.000 0.00 0.00 0.00 3.16
302 303 1.681264 GAACCCCTTTATCGCATTGGG 59.319 52.381 0.00 0.00 39.02 4.12
303 304 0.629058 ACCCCTTTATCGCATTGGGT 59.371 50.000 0.24 0.00 41.40 4.51
304 305 1.032014 CCCCTTTATCGCATTGGGTG 58.968 55.000 0.24 0.00 36.26 4.61
315 316 2.886862 CATTGGGTGCAAGTGTTTGA 57.113 45.000 0.00 0.00 36.36 2.69
316 317 3.389925 CATTGGGTGCAAGTGTTTGAT 57.610 42.857 0.00 0.00 36.36 2.57
317 318 3.731089 CATTGGGTGCAAGTGTTTGATT 58.269 40.909 0.00 0.00 36.36 2.57
318 319 2.886862 TGGGTGCAAGTGTTTGATTG 57.113 45.000 0.00 0.00 36.36 2.67
319 320 2.106566 TGGGTGCAAGTGTTTGATTGT 58.893 42.857 0.00 0.00 36.36 2.71
320 321 2.499289 TGGGTGCAAGTGTTTGATTGTT 59.501 40.909 0.00 0.00 36.36 2.83
321 322 3.055530 TGGGTGCAAGTGTTTGATTGTTT 60.056 39.130 0.00 0.00 36.36 2.83
322 323 3.309410 GGGTGCAAGTGTTTGATTGTTTG 59.691 43.478 0.00 0.00 36.36 2.93
323 324 3.932089 GGTGCAAGTGTTTGATTGTTTGT 59.068 39.130 0.00 0.00 36.36 2.83
324 325 4.201705 GGTGCAAGTGTTTGATTGTTTGTG 60.202 41.667 0.00 0.00 36.36 3.33
325 326 3.370366 TGCAAGTGTTTGATTGTTTGTGC 59.630 39.130 0.00 0.00 36.36 4.57
326 327 3.370366 GCAAGTGTTTGATTGTTTGTGCA 59.630 39.130 0.00 0.00 36.36 4.57
327 328 4.492895 GCAAGTGTTTGATTGTTTGTGCAG 60.493 41.667 0.00 0.00 36.36 4.41
328 329 3.784338 AGTGTTTGATTGTTTGTGCAGG 58.216 40.909 0.00 0.00 0.00 4.85
329 330 3.195396 AGTGTTTGATTGTTTGTGCAGGT 59.805 39.130 0.00 0.00 0.00 4.00
330 331 3.306703 GTGTTTGATTGTTTGTGCAGGTG 59.693 43.478 0.00 0.00 0.00 4.00
331 332 2.222007 TTGATTGTTTGTGCAGGTGC 57.778 45.000 0.00 0.00 42.50 5.01
342 343 2.724520 GCAGGTGCATCTATTGGGG 58.275 57.895 0.00 0.00 41.59 4.96
343 344 0.183492 GCAGGTGCATCTATTGGGGA 59.817 55.000 0.00 0.00 41.59 4.81
344 345 1.972872 CAGGTGCATCTATTGGGGAC 58.027 55.000 0.00 0.00 0.00 4.46
345 346 1.492176 CAGGTGCATCTATTGGGGACT 59.508 52.381 0.00 0.00 0.00 3.85
346 347 2.092212 CAGGTGCATCTATTGGGGACTT 60.092 50.000 0.00 0.00 0.00 3.01
347 348 2.092212 AGGTGCATCTATTGGGGACTTG 60.092 50.000 0.00 0.00 0.00 3.16
348 349 1.678101 GTGCATCTATTGGGGACTTGC 59.322 52.381 0.00 0.00 0.00 4.01
349 350 0.947244 GCATCTATTGGGGACTTGCG 59.053 55.000 0.00 0.00 0.00 4.85
350 351 1.747206 GCATCTATTGGGGACTTGCGT 60.747 52.381 0.00 0.00 0.00 5.24
351 352 1.942657 CATCTATTGGGGACTTGCGTG 59.057 52.381 0.00 0.00 0.00 5.34
352 353 0.981183 TCTATTGGGGACTTGCGTGT 59.019 50.000 0.00 0.00 0.00 4.49
353 354 1.349688 TCTATTGGGGACTTGCGTGTT 59.650 47.619 0.00 0.00 0.00 3.32
354 355 2.159382 CTATTGGGGACTTGCGTGTTT 58.841 47.619 0.00 0.00 0.00 2.83
355 356 0.958822 ATTGGGGACTTGCGTGTTTC 59.041 50.000 0.00 0.00 0.00 2.78
356 357 0.106918 TTGGGGACTTGCGTGTTTCT 60.107 50.000 0.00 0.00 0.00 2.52
357 358 0.534203 TGGGGACTTGCGTGTTTCTC 60.534 55.000 0.00 0.00 0.00 2.87
358 359 1.235281 GGGGACTTGCGTGTTTCTCC 61.235 60.000 0.00 0.00 0.00 3.71
359 360 0.250338 GGGACTTGCGTGTTTCTCCT 60.250 55.000 0.00 0.00 0.00 3.69
360 361 1.001633 GGGACTTGCGTGTTTCTCCTA 59.998 52.381 0.00 0.00 0.00 2.94
361 362 2.067013 GGACTTGCGTGTTTCTCCTAC 58.933 52.381 0.00 0.00 0.00 3.18
362 363 2.288886 GGACTTGCGTGTTTCTCCTACT 60.289 50.000 0.00 0.00 0.00 2.57
363 364 2.731976 GACTTGCGTGTTTCTCCTACTG 59.268 50.000 0.00 0.00 0.00 2.74
364 365 2.069273 CTTGCGTGTTTCTCCTACTGG 58.931 52.381 0.00 0.00 0.00 4.00
365 366 1.334160 TGCGTGTTTCTCCTACTGGA 58.666 50.000 0.00 0.00 40.69 3.86
366 367 1.899814 TGCGTGTTTCTCCTACTGGAT 59.100 47.619 0.00 0.00 42.29 3.41
367 368 2.301870 TGCGTGTTTCTCCTACTGGATT 59.698 45.455 0.00 0.00 42.29 3.01
368 369 2.673368 GCGTGTTTCTCCTACTGGATTG 59.327 50.000 0.00 0.00 42.29 2.67
369 370 3.616560 GCGTGTTTCTCCTACTGGATTGA 60.617 47.826 0.00 0.00 42.29 2.57
370 371 4.759782 CGTGTTTCTCCTACTGGATTGAT 58.240 43.478 0.00 0.00 42.29 2.57
371 372 5.681437 GCGTGTTTCTCCTACTGGATTGATA 60.681 44.000 0.00 0.00 42.29 2.15
372 373 5.749109 CGTGTTTCTCCTACTGGATTGATAC 59.251 44.000 0.00 0.00 42.29 2.24
373 374 6.049790 GTGTTTCTCCTACTGGATTGATACC 58.950 44.000 0.00 0.00 42.29 2.73
374 375 5.964477 TGTTTCTCCTACTGGATTGATACCT 59.036 40.000 0.00 0.00 42.29 3.08
375 376 6.443849 TGTTTCTCCTACTGGATTGATACCTT 59.556 38.462 0.00 0.00 42.29 3.50
376 377 6.485830 TTCTCCTACTGGATTGATACCTTG 57.514 41.667 0.00 0.00 42.29 3.61
377 378 5.777449 TCTCCTACTGGATTGATACCTTGA 58.223 41.667 0.00 0.00 42.29 3.02
378 379 6.385443 TCTCCTACTGGATTGATACCTTGAT 58.615 40.000 0.00 0.00 42.29 2.57
379 380 6.846505 TCTCCTACTGGATTGATACCTTGATT 59.153 38.462 0.00 0.00 42.29 2.57
380 381 7.015682 TCTCCTACTGGATTGATACCTTGATTC 59.984 40.741 0.00 0.00 42.29 2.52
381 382 6.846505 TCCTACTGGATTGATACCTTGATTCT 59.153 38.462 0.00 0.00 37.46 2.40
382 383 7.348274 TCCTACTGGATTGATACCTTGATTCTT 59.652 37.037 0.00 0.00 37.46 2.52
383 384 8.651389 CCTACTGGATTGATACCTTGATTCTTA 58.349 37.037 0.00 0.00 34.57 2.10
385 386 8.738645 ACTGGATTGATACCTTGATTCTTAAC 57.261 34.615 0.00 0.00 0.00 2.01
386 387 8.552296 ACTGGATTGATACCTTGATTCTTAACT 58.448 33.333 0.00 0.00 0.00 2.24
387 388 8.737168 TGGATTGATACCTTGATTCTTAACTG 57.263 34.615 0.00 0.00 0.00 3.16
388 389 8.548025 TGGATTGATACCTTGATTCTTAACTGA 58.452 33.333 0.00 0.00 0.00 3.41
389 390 9.050601 GGATTGATACCTTGATTCTTAACTGAG 57.949 37.037 0.00 0.00 0.00 3.35
390 391 8.970859 ATTGATACCTTGATTCTTAACTGAGG 57.029 34.615 0.00 0.00 0.00 3.86
391 392 6.889198 TGATACCTTGATTCTTAACTGAGGG 58.111 40.000 0.00 0.00 0.00 4.30
392 393 6.672218 TGATACCTTGATTCTTAACTGAGGGA 59.328 38.462 0.00 0.00 0.00 4.20
393 394 5.843019 ACCTTGATTCTTAACTGAGGGAA 57.157 39.130 0.00 0.00 0.00 3.97
394 395 6.200878 ACCTTGATTCTTAACTGAGGGAAA 57.799 37.500 0.00 0.00 0.00 3.13
395 396 6.794534 ACCTTGATTCTTAACTGAGGGAAAT 58.205 36.000 0.00 0.00 0.00 2.17
396 397 7.928873 ACCTTGATTCTTAACTGAGGGAAATA 58.071 34.615 0.00 0.00 0.00 1.40
397 398 7.829706 ACCTTGATTCTTAACTGAGGGAAATAC 59.170 37.037 0.00 0.00 0.00 1.89
398 399 8.049721 CCTTGATTCTTAACTGAGGGAAATACT 58.950 37.037 0.00 0.00 0.00 2.12
399 400 9.454859 CTTGATTCTTAACTGAGGGAAATACTT 57.545 33.333 0.00 0.00 0.00 2.24
405 406 9.716556 TCTTAACTGAGGGAAATACTTATCTCT 57.283 33.333 0.00 0.00 0.00 3.10
412 413 9.026121 TGAGGGAAATACTTATCTCTACTATGC 57.974 37.037 0.00 0.00 0.00 3.14
413 414 8.958060 AGGGAAATACTTATCTCTACTATGCA 57.042 34.615 0.00 0.00 0.00 3.96
414 415 9.030452 AGGGAAATACTTATCTCTACTATGCAG 57.970 37.037 0.00 0.00 0.00 4.41
415 416 7.762159 GGGAAATACTTATCTCTACTATGCAGC 59.238 40.741 0.00 0.00 0.00 5.25
416 417 7.486551 GGAAATACTTATCTCTACTATGCAGCG 59.513 40.741 0.00 0.00 0.00 5.18
417 418 7.455641 AATACTTATCTCTACTATGCAGCGT 57.544 36.000 0.00 0.00 0.00 5.07
418 419 5.365403 ACTTATCTCTACTATGCAGCGTC 57.635 43.478 0.00 0.00 0.00 5.19
419 420 4.822350 ACTTATCTCTACTATGCAGCGTCA 59.178 41.667 0.00 0.00 0.00 4.35
420 421 3.634568 ATCTCTACTATGCAGCGTCAC 57.365 47.619 0.00 0.00 0.00 3.67
421 422 1.676529 TCTCTACTATGCAGCGTCACC 59.323 52.381 0.00 0.00 0.00 4.02
422 423 0.744874 TCTACTATGCAGCGTCACCC 59.255 55.000 0.00 0.00 0.00 4.61
423 424 0.747255 CTACTATGCAGCGTCACCCT 59.253 55.000 0.00 0.00 0.00 4.34
424 425 1.137086 CTACTATGCAGCGTCACCCTT 59.863 52.381 0.00 0.00 0.00 3.95
425 426 0.324943 ACTATGCAGCGTCACCCTTT 59.675 50.000 0.00 0.00 0.00 3.11
426 427 1.009829 CTATGCAGCGTCACCCTTTC 58.990 55.000 0.00 0.00 0.00 2.62
427 428 0.323302 TATGCAGCGTCACCCTTTCA 59.677 50.000 0.00 0.00 0.00 2.69
428 429 0.322816 ATGCAGCGTCACCCTTTCAT 60.323 50.000 0.00 0.00 0.00 2.57
429 430 0.955428 TGCAGCGTCACCCTTTCATC 60.955 55.000 0.00 0.00 0.00 2.92
430 431 0.674895 GCAGCGTCACCCTTTCATCT 60.675 55.000 0.00 0.00 0.00 2.90
431 432 1.813513 CAGCGTCACCCTTTCATCTT 58.186 50.000 0.00 0.00 0.00 2.40
432 433 1.734465 CAGCGTCACCCTTTCATCTTC 59.266 52.381 0.00 0.00 0.00 2.87
433 434 1.347707 AGCGTCACCCTTTCATCTTCA 59.652 47.619 0.00 0.00 0.00 3.02
434 435 2.151202 GCGTCACCCTTTCATCTTCAA 58.849 47.619 0.00 0.00 0.00 2.69
435 436 2.160417 GCGTCACCCTTTCATCTTCAAG 59.840 50.000 0.00 0.00 0.00 3.02
436 437 2.744202 CGTCACCCTTTCATCTTCAAGG 59.256 50.000 0.00 0.00 39.58 3.61
444 445 5.541845 CCTTTCATCTTCAAGGGAAAAACC 58.458 41.667 6.62 0.00 36.62 3.27
445 446 5.070313 CCTTTCATCTTCAAGGGAAAAACCA 59.930 40.000 6.62 0.00 41.20 3.67
446 447 6.407979 CCTTTCATCTTCAAGGGAAAAACCAA 60.408 38.462 6.62 0.00 41.20 3.67
447 448 5.529581 TCATCTTCAAGGGAAAAACCAAC 57.470 39.130 0.00 0.00 41.20 3.77
448 449 4.037446 TCATCTTCAAGGGAAAAACCAACG 59.963 41.667 0.00 0.00 41.20 4.10
449 450 2.100087 TCTTCAAGGGAAAAACCAACGC 59.900 45.455 0.00 0.00 41.20 4.84
450 451 0.382515 TCAAGGGAAAAACCAACGCG 59.617 50.000 3.53 3.53 41.20 6.01
451 452 0.382515 CAAGGGAAAAACCAACGCGA 59.617 50.000 15.93 0.00 41.20 5.87
452 453 0.666374 AAGGGAAAAACCAACGCGAG 59.334 50.000 15.93 4.40 41.20 5.03
453 454 1.371267 GGGAAAAACCAACGCGAGC 60.371 57.895 15.93 0.00 41.20 5.03
454 455 1.652563 GGAAAAACCAACGCGAGCT 59.347 52.632 15.93 0.00 38.79 4.09
455 456 0.385598 GGAAAAACCAACGCGAGCTC 60.386 55.000 15.93 2.73 38.79 4.09
456 457 0.306533 GAAAAACCAACGCGAGCTCA 59.693 50.000 15.93 0.00 0.00 4.26
457 458 0.736053 AAAAACCAACGCGAGCTCAA 59.264 45.000 15.93 0.00 0.00 3.02
458 459 0.307760 AAAACCAACGCGAGCTCAAG 59.692 50.000 15.93 9.22 0.00 3.02
459 460 0.531974 AAACCAACGCGAGCTCAAGA 60.532 50.000 15.93 0.00 0.00 3.02
460 461 0.531974 AACCAACGCGAGCTCAAGAA 60.532 50.000 15.93 0.00 0.00 2.52
461 462 0.946221 ACCAACGCGAGCTCAAGAAG 60.946 55.000 15.93 2.04 0.00 2.85
462 463 0.946221 CCAACGCGAGCTCAAGAAGT 60.946 55.000 15.93 2.69 0.00 3.01
463 464 1.668919 CCAACGCGAGCTCAAGAAGTA 60.669 52.381 15.93 0.00 0.00 2.24
464 465 1.651138 CAACGCGAGCTCAAGAAGTAG 59.349 52.381 15.93 0.00 0.00 2.57
465 466 0.456995 ACGCGAGCTCAAGAAGTAGC 60.457 55.000 15.93 5.21 39.08 3.58
514 515 0.947244 CACTTGTGTGGCACTCTTCC 59.053 55.000 19.83 2.34 40.33 3.46
559 562 3.515286 GAGCCACGGATCGTCGGA 61.515 66.667 11.12 0.00 38.32 4.55
567 570 1.334243 ACGGATCGTCGGATCTTTCTC 59.666 52.381 4.30 0.00 46.77 2.87
575 578 3.730963 CGTCGGATCTTTCTCAACGATCA 60.731 47.826 0.00 0.00 36.22 2.92
603 606 6.424509 AGGTCGTTTTAAATTCGTATGTGTCA 59.575 34.615 11.21 0.00 0.00 3.58
653 656 6.703607 AGCATTGTATCTTCTTCCTTGATACG 59.296 38.462 0.00 0.00 43.02 3.06
677 680 3.785486 TGCACCTCTTCTACATGATTCG 58.215 45.455 0.00 0.00 0.00 3.34
716 721 3.063510 ACATCATTGACTGTGTCAGGG 57.936 47.619 0.66 0.00 43.69 4.45
1056 1061 0.601558 TCGCAGAAGGTACACTCCAC 59.398 55.000 0.00 0.00 0.00 4.02
1250 1255 1.901833 GGACATGCTTTTTGGGGTGAT 59.098 47.619 0.00 0.00 0.00 3.06
1268 1273 2.028203 TGATGTCTCGCATGAGGTTGAA 60.028 45.455 0.00 0.00 42.79 2.69
1515 1520 0.252103 ACCTTGGCGAAGAGAGGGTA 60.252 55.000 10.40 0.00 33.51 3.69
1694 1700 1.314730 CAGTTTGTTAGGCCGGTGTT 58.685 50.000 1.90 0.00 0.00 3.32
1822 1828 1.679680 CAAGGCCCACATAAGCAGATG 59.320 52.381 0.00 0.00 0.00 2.90
1966 1987 4.468153 TGATATGTTGGTAGGTGTAGTGCA 59.532 41.667 0.00 0.00 0.00 4.57
1990 2011 9.277783 GCATAGAATAAGAACATGACATTACCT 57.722 33.333 0.00 0.00 0.00 3.08
2053 2074 4.925054 CGTGCATTCATTGTTTCCTTGATT 59.075 37.500 0.00 0.00 0.00 2.57
2173 2199 7.615582 TTTGTTGGACATAATGTTTGCAAAA 57.384 28.000 14.67 5.00 0.00 2.44
2189 2215 5.091261 TGCAAAAACTGGTTGGTTAATGT 57.909 34.783 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.444876 GCTAAGTATCATCCCCTCTTGCAA 60.445 45.833 0.00 0.00 0.00 4.08
1 2 3.071602 GCTAAGTATCATCCCCTCTTGCA 59.928 47.826 0.00 0.00 0.00 4.08
2 3 3.071602 TGCTAAGTATCATCCCCTCTTGC 59.928 47.826 0.00 0.00 0.00 4.01
4 5 3.326297 GCTGCTAAGTATCATCCCCTCTT 59.674 47.826 0.00 0.00 0.00 2.85
5 6 2.903135 GCTGCTAAGTATCATCCCCTCT 59.097 50.000 0.00 0.00 0.00 3.69
6 7 2.634940 TGCTGCTAAGTATCATCCCCTC 59.365 50.000 0.00 0.00 0.00 4.30
7 8 2.636893 CTGCTGCTAAGTATCATCCCCT 59.363 50.000 0.00 0.00 0.00 4.79
8 9 2.873649 GCTGCTGCTAAGTATCATCCCC 60.874 54.545 8.53 0.00 36.03 4.81
9 10 2.421619 GCTGCTGCTAAGTATCATCCC 58.578 52.381 8.53 0.00 36.03 3.85
10 11 2.064762 CGCTGCTGCTAAGTATCATCC 58.935 52.381 14.03 0.00 36.97 3.51
11 12 2.985809 CTCGCTGCTGCTAAGTATCATC 59.014 50.000 14.03 0.00 36.97 2.92
12 13 2.363680 ACTCGCTGCTGCTAAGTATCAT 59.636 45.455 14.03 0.00 36.97 2.45
13 14 1.751351 ACTCGCTGCTGCTAAGTATCA 59.249 47.619 14.03 0.00 36.97 2.15
14 15 2.500509 ACTCGCTGCTGCTAAGTATC 57.499 50.000 14.03 0.00 36.97 2.24
15 16 2.969628 AACTCGCTGCTGCTAAGTAT 57.030 45.000 16.87 8.10 34.13 2.12
16 17 2.736721 CAAAACTCGCTGCTGCTAAGTA 59.263 45.455 16.87 0.00 34.13 2.24
17 18 1.532868 CAAAACTCGCTGCTGCTAAGT 59.467 47.619 14.03 13.22 35.38 2.24
18 19 1.800586 TCAAAACTCGCTGCTGCTAAG 59.199 47.619 14.03 12.62 36.97 2.18
19 20 1.877637 TCAAAACTCGCTGCTGCTAA 58.122 45.000 14.03 0.88 36.97 3.09
20 21 1.877637 TTCAAAACTCGCTGCTGCTA 58.122 45.000 14.03 1.49 36.97 3.49
21 22 1.024271 TTTCAAAACTCGCTGCTGCT 58.976 45.000 14.03 0.00 36.97 4.24
22 23 1.838913 TTTTCAAAACTCGCTGCTGC 58.161 45.000 5.34 5.34 0.00 5.25
39 40 8.451748 GCTAAAGTACTTAGTAGCAGCATTTTT 58.548 33.333 24.77 3.32 39.49 1.94
40 41 7.606456 TGCTAAAGTACTTAGTAGCAGCATTTT 59.394 33.333 27.03 5.25 42.96 1.82
41 42 7.103641 TGCTAAAGTACTTAGTAGCAGCATTT 58.896 34.615 27.03 5.62 42.96 2.32
42 43 6.640518 TGCTAAAGTACTTAGTAGCAGCATT 58.359 36.000 27.03 5.79 42.96 3.56
43 44 6.222038 TGCTAAAGTACTTAGTAGCAGCAT 57.778 37.500 27.03 6.23 42.96 3.79
44 45 5.654603 TGCTAAAGTACTTAGTAGCAGCA 57.345 39.130 27.03 20.90 42.96 4.41
50 51 5.503031 CGCGCTACTGCTAAAGTACTTAGTA 60.503 44.000 8.92 11.51 40.56 1.82
51 52 4.670347 GCGCTACTGCTAAAGTACTTAGT 58.330 43.478 8.92 10.95 40.56 2.24
52 53 3.724751 CGCGCTACTGCTAAAGTACTTAG 59.275 47.826 8.92 5.05 40.56 2.18
53 54 3.127548 ACGCGCTACTGCTAAAGTACTTA 59.872 43.478 8.92 0.00 40.56 2.24
54 55 2.094854 ACGCGCTACTGCTAAAGTACTT 60.095 45.455 5.73 1.12 40.56 2.24
55 56 1.471684 ACGCGCTACTGCTAAAGTACT 59.528 47.619 5.73 0.00 40.56 2.73
56 57 1.844962 GACGCGCTACTGCTAAAGTAC 59.155 52.381 5.73 0.00 40.56 2.73
57 58 1.202222 GGACGCGCTACTGCTAAAGTA 60.202 52.381 5.73 0.00 40.56 2.24
58 59 0.458025 GGACGCGCTACTGCTAAAGT 60.458 55.000 5.73 0.00 43.40 2.66
59 60 0.457853 TGGACGCGCTACTGCTAAAG 60.458 55.000 5.73 0.00 36.97 1.85
60 61 0.457853 CTGGACGCGCTACTGCTAAA 60.458 55.000 5.73 0.00 36.97 1.85
61 62 1.138883 CTGGACGCGCTACTGCTAA 59.861 57.895 5.73 0.00 36.97 3.09
62 63 2.771639 CCTGGACGCGCTACTGCTA 61.772 63.158 5.73 0.00 36.97 3.49
63 64 4.135153 CCTGGACGCGCTACTGCT 62.135 66.667 5.73 0.00 36.97 4.24
64 65 4.129737 TCCTGGACGCGCTACTGC 62.130 66.667 5.73 0.00 0.00 4.40
65 66 1.934220 TTCTCCTGGACGCGCTACTG 61.934 60.000 5.73 0.10 0.00 2.74
66 67 1.658686 CTTCTCCTGGACGCGCTACT 61.659 60.000 5.73 0.00 0.00 2.57
67 68 1.226717 CTTCTCCTGGACGCGCTAC 60.227 63.158 5.73 0.00 0.00 3.58
68 69 2.415608 CCTTCTCCTGGACGCGCTA 61.416 63.158 5.73 0.00 0.00 4.26
69 70 3.764466 CCTTCTCCTGGACGCGCT 61.764 66.667 5.73 0.00 0.00 5.92
70 71 4.821589 CCCTTCTCCTGGACGCGC 62.822 72.222 5.73 0.00 0.00 6.86
71 72 4.821589 GCCCTTCTCCTGGACGCG 62.822 72.222 3.53 3.53 0.00 6.01
72 73 4.821589 CGCCCTTCTCCTGGACGC 62.822 72.222 0.00 0.00 0.00 5.19
73 74 4.821589 GCGCCCTTCTCCTGGACG 62.822 72.222 0.00 0.00 0.00 4.79
74 75 2.058595 TAGCGCCCTTCTCCTGGAC 61.059 63.158 2.29 0.00 0.00 4.02
75 76 2.058595 GTAGCGCCCTTCTCCTGGA 61.059 63.158 2.29 0.00 0.00 3.86
76 77 0.755698 TAGTAGCGCCCTTCTCCTGG 60.756 60.000 2.29 0.00 0.00 4.45
77 78 0.386113 GTAGTAGCGCCCTTCTCCTG 59.614 60.000 2.29 0.00 0.00 3.86
78 79 0.259356 AGTAGTAGCGCCCTTCTCCT 59.741 55.000 2.29 0.00 0.00 3.69
79 80 1.978454 TAGTAGTAGCGCCCTTCTCC 58.022 55.000 2.29 0.00 0.00 3.71
80 81 5.187687 AGATATAGTAGTAGCGCCCTTCTC 58.812 45.833 2.29 0.00 0.00 2.87
81 82 5.182169 AGATATAGTAGTAGCGCCCTTCT 57.818 43.478 2.29 6.42 0.00 2.85
82 83 5.007921 GCTAGATATAGTAGTAGCGCCCTTC 59.992 48.000 2.29 0.00 0.00 3.46
83 84 4.883006 GCTAGATATAGTAGTAGCGCCCTT 59.117 45.833 2.29 0.00 0.00 3.95
84 85 4.453751 GCTAGATATAGTAGTAGCGCCCT 58.546 47.826 2.29 2.43 0.00 5.19
85 86 3.565063 GGCTAGATATAGTAGTAGCGCCC 59.435 52.174 2.29 0.00 39.06 6.13
86 87 4.273969 CAGGCTAGATATAGTAGTAGCGCC 59.726 50.000 2.29 0.00 39.06 6.53
87 88 5.117584 TCAGGCTAGATATAGTAGTAGCGC 58.882 45.833 0.00 0.00 39.06 5.92
88 89 6.259167 CCTTCAGGCTAGATATAGTAGTAGCG 59.741 46.154 0.00 0.00 39.06 4.26
89 90 7.562454 CCTTCAGGCTAGATATAGTAGTAGC 57.438 44.000 0.00 0.00 37.72 3.58
106 107 2.260869 CCACGGTGTTGCCTTCAGG 61.261 63.158 7.45 0.00 38.53 3.86
107 108 2.908073 GCCACGGTGTTGCCTTCAG 61.908 63.158 7.45 0.00 34.25 3.02
108 109 2.904866 GCCACGGTGTTGCCTTCA 60.905 61.111 7.45 0.00 34.25 3.02
109 110 1.805428 ATTGCCACGGTGTTGCCTTC 61.805 55.000 7.45 0.00 34.25 3.46
110 111 1.398958 AATTGCCACGGTGTTGCCTT 61.399 50.000 7.45 0.00 34.25 4.35
111 112 1.832167 AATTGCCACGGTGTTGCCT 60.832 52.632 7.45 0.00 34.25 4.75
112 113 1.664333 CAATTGCCACGGTGTTGCC 60.664 57.895 7.45 0.00 0.00 4.52
113 114 0.312416 TACAATTGCCACGGTGTTGC 59.688 50.000 5.05 4.94 0.00 4.17
114 115 1.606668 ACTACAATTGCCACGGTGTTG 59.393 47.619 5.05 7.44 0.00 3.33
115 116 1.975660 ACTACAATTGCCACGGTGTT 58.024 45.000 5.05 0.00 0.00 3.32
116 117 2.038033 ACTACTACAATTGCCACGGTGT 59.962 45.455 5.05 0.00 0.00 4.16
117 118 2.695359 ACTACTACAATTGCCACGGTG 58.305 47.619 5.05 0.00 0.00 4.94
118 119 3.677976 GCTACTACTACAATTGCCACGGT 60.678 47.826 5.05 2.53 0.00 4.83
119 120 2.864343 GCTACTACTACAATTGCCACGG 59.136 50.000 5.05 0.00 0.00 4.94
120 121 2.534349 CGCTACTACTACAATTGCCACG 59.466 50.000 5.05 0.00 0.00 4.94
121 122 2.284417 GCGCTACTACTACAATTGCCAC 59.716 50.000 5.05 0.00 0.00 5.01
122 123 2.167693 AGCGCTACTACTACAATTGCCA 59.832 45.455 8.99 0.00 0.00 4.92
123 124 2.795470 GAGCGCTACTACTACAATTGCC 59.205 50.000 11.50 0.00 0.00 4.52
124 125 2.468040 CGAGCGCTACTACTACAATTGC 59.532 50.000 11.50 0.00 0.00 3.56
125 126 3.692576 ACGAGCGCTACTACTACAATTG 58.307 45.455 11.50 3.24 0.00 2.32
126 127 4.367386 AACGAGCGCTACTACTACAATT 57.633 40.909 11.50 0.00 0.00 2.32
127 128 4.142534 TGAAACGAGCGCTACTACTACAAT 60.143 41.667 11.50 0.00 0.00 2.71
128 129 3.189080 TGAAACGAGCGCTACTACTACAA 59.811 43.478 11.50 0.00 0.00 2.41
129 130 2.743664 TGAAACGAGCGCTACTACTACA 59.256 45.455 11.50 2.28 0.00 2.74
130 131 3.097185 GTGAAACGAGCGCTACTACTAC 58.903 50.000 11.50 2.37 0.00 2.73
131 132 2.096496 GGTGAAACGAGCGCTACTACTA 59.904 50.000 11.50 0.00 38.12 1.82
132 133 1.135460 GGTGAAACGAGCGCTACTACT 60.135 52.381 11.50 0.00 38.12 2.57
133 134 1.135460 AGGTGAAACGAGCGCTACTAC 60.135 52.381 11.50 3.96 38.12 2.73
134 135 1.171308 AGGTGAAACGAGCGCTACTA 58.829 50.000 11.50 0.00 38.12 1.82
135 136 1.132643 CTAGGTGAAACGAGCGCTACT 59.867 52.381 11.50 0.00 38.12 2.57
136 137 1.131883 TCTAGGTGAAACGAGCGCTAC 59.868 52.381 11.50 2.87 38.12 3.58
137 138 1.400846 CTCTAGGTGAAACGAGCGCTA 59.599 52.381 11.50 0.00 38.12 4.26
138 139 0.171455 CTCTAGGTGAAACGAGCGCT 59.829 55.000 11.27 11.27 38.12 5.92
139 140 0.109226 ACTCTAGGTGAAACGAGCGC 60.109 55.000 0.00 0.00 38.12 5.92
150 151 3.283751 CAGTAGCAGTAGCACTCTAGGT 58.716 50.000 0.00 0.00 45.49 3.08
151 152 2.621055 CCAGTAGCAGTAGCACTCTAGG 59.379 54.545 0.00 0.00 45.49 3.02
152 153 2.621055 CCCAGTAGCAGTAGCACTCTAG 59.379 54.545 0.00 0.00 45.49 2.43
153 154 2.656002 CCCAGTAGCAGTAGCACTCTA 58.344 52.381 0.00 0.00 45.49 2.43
154 155 1.479709 CCCAGTAGCAGTAGCACTCT 58.520 55.000 0.00 0.00 45.49 3.24
155 156 0.179097 GCCCAGTAGCAGTAGCACTC 60.179 60.000 0.00 0.00 45.49 3.51
156 157 0.616111 AGCCCAGTAGCAGTAGCACT 60.616 55.000 0.00 0.00 45.49 4.40
157 158 1.112113 TAGCCCAGTAGCAGTAGCAC 58.888 55.000 0.00 0.00 45.49 4.40
158 159 2.088104 ATAGCCCAGTAGCAGTAGCA 57.912 50.000 0.00 0.00 45.49 3.49
159 160 3.574826 ACTAATAGCCCAGTAGCAGTAGC 59.425 47.826 0.00 0.00 42.56 3.58
160 161 6.503589 CTACTAATAGCCCAGTAGCAGTAG 57.496 45.833 0.00 0.00 38.25 2.57
174 175 5.752892 TCAGAAGACCACGCTACTAATAG 57.247 43.478 0.00 0.00 0.00 1.73
175 176 5.450137 GCTTCAGAAGACCACGCTACTAATA 60.450 44.000 14.86 0.00 0.00 0.98
176 177 4.678309 GCTTCAGAAGACCACGCTACTAAT 60.678 45.833 14.86 0.00 0.00 1.73
177 178 3.367087 GCTTCAGAAGACCACGCTACTAA 60.367 47.826 14.86 0.00 0.00 2.24
178 179 2.163815 GCTTCAGAAGACCACGCTACTA 59.836 50.000 14.86 0.00 0.00 1.82
179 180 1.067495 GCTTCAGAAGACCACGCTACT 60.067 52.381 14.86 0.00 0.00 2.57
180 181 1.067495 AGCTTCAGAAGACCACGCTAC 60.067 52.381 14.86 0.00 0.00 3.58
181 182 1.202582 GAGCTTCAGAAGACCACGCTA 59.797 52.381 14.86 0.00 0.00 4.26
182 183 0.037790 GAGCTTCAGAAGACCACGCT 60.038 55.000 14.86 3.08 0.00 5.07
183 184 1.347817 CGAGCTTCAGAAGACCACGC 61.348 60.000 14.86 0.00 0.00 5.34
184 185 1.347817 GCGAGCTTCAGAAGACCACG 61.348 60.000 14.86 12.79 0.00 4.94
185 186 0.037790 AGCGAGCTTCAGAAGACCAC 60.038 55.000 14.86 0.28 0.00 4.16
186 187 1.202582 GTAGCGAGCTTCAGAAGACCA 59.797 52.381 14.86 0.00 0.00 4.02
187 188 1.474879 AGTAGCGAGCTTCAGAAGACC 59.525 52.381 14.86 3.48 0.00 3.85
188 189 2.525055 CAGTAGCGAGCTTCAGAAGAC 58.475 52.381 14.86 5.49 0.00 3.01
189 190 1.135257 GCAGTAGCGAGCTTCAGAAGA 60.135 52.381 14.86 0.00 0.00 2.87
190 191 1.276415 GCAGTAGCGAGCTTCAGAAG 58.724 55.000 5.72 5.72 0.00 2.85
191 192 3.425578 GCAGTAGCGAGCTTCAGAA 57.574 52.632 1.86 0.00 0.00 3.02
209 210 9.601971 TTAAAAACAAACGCTACTGCTAATTAG 57.398 29.630 8.20 8.20 36.97 1.73
210 211 9.947669 TTTAAAAACAAACGCTACTGCTAATTA 57.052 25.926 0.00 0.00 36.97 1.40
211 212 8.748582 GTTTAAAAACAAACGCTACTGCTAATT 58.251 29.630 0.74 0.00 38.74 1.40
212 213 7.380333 GGTTTAAAAACAAACGCTACTGCTAAT 59.620 33.333 7.80 0.00 40.63 1.73
213 214 6.692249 GGTTTAAAAACAAACGCTACTGCTAA 59.308 34.615 7.80 0.00 40.63 3.09
214 215 6.038492 AGGTTTAAAAACAAACGCTACTGCTA 59.962 34.615 7.80 0.00 40.63 3.49
215 216 5.038683 GGTTTAAAAACAAACGCTACTGCT 58.961 37.500 7.80 0.00 40.63 4.24
216 217 5.038683 AGGTTTAAAAACAAACGCTACTGC 58.961 37.500 7.80 0.00 40.63 4.40
217 218 5.394322 CGAGGTTTAAAAACAAACGCTACTG 59.606 40.000 7.80 0.00 40.63 2.74
218 219 5.504392 CGAGGTTTAAAAACAAACGCTACT 58.496 37.500 7.80 0.00 40.63 2.57
219 220 4.145243 GCGAGGTTTAAAAACAAACGCTAC 59.855 41.667 22.63 7.03 44.23 3.58
220 221 4.281264 GCGAGGTTTAAAAACAAACGCTA 58.719 39.130 22.63 0.00 44.23 4.26
221 222 3.110358 GCGAGGTTTAAAAACAAACGCT 58.890 40.909 22.63 7.91 44.23 5.07
222 223 3.110358 AGCGAGGTTTAAAAACAAACGC 58.890 40.909 22.53 22.53 45.89 4.84
223 224 5.394322 CAGTAGCGAGGTTTAAAAACAAACG 59.606 40.000 7.80 9.79 40.63 3.60
224 225 5.172591 GCAGTAGCGAGGTTTAAAAACAAAC 59.827 40.000 7.80 0.00 40.63 2.93
225 226 5.275494 GCAGTAGCGAGGTTTAAAAACAAA 58.725 37.500 7.80 0.00 40.63 2.83
226 227 4.851010 GCAGTAGCGAGGTTTAAAAACAA 58.149 39.130 7.80 0.00 40.63 2.83
227 228 4.477302 GCAGTAGCGAGGTTTAAAAACA 57.523 40.909 7.80 0.00 40.63 2.83
241 242 7.113684 CGTTATACACAGAATCTTAGCAGTAGC 59.886 40.741 0.00 0.00 42.56 3.58
242 243 8.129840 ACGTTATACACAGAATCTTAGCAGTAG 58.870 37.037 0.00 0.00 0.00 2.57
243 244 7.993101 ACGTTATACACAGAATCTTAGCAGTA 58.007 34.615 0.00 0.00 0.00 2.74
244 245 6.864342 ACGTTATACACAGAATCTTAGCAGT 58.136 36.000 0.00 0.00 0.00 4.40
245 246 7.757097 AACGTTATACACAGAATCTTAGCAG 57.243 36.000 0.00 0.00 0.00 4.24
246 247 8.542497 AAAACGTTATACACAGAATCTTAGCA 57.458 30.769 0.00 0.00 0.00 3.49
247 248 8.114905 GGAAAACGTTATACACAGAATCTTAGC 58.885 37.037 0.00 0.00 0.00 3.09
248 249 8.601476 GGGAAAACGTTATACACAGAATCTTAG 58.399 37.037 0.00 0.00 0.00 2.18
249 250 8.316214 AGGGAAAACGTTATACACAGAATCTTA 58.684 33.333 0.00 0.00 0.00 2.10
250 251 7.166167 AGGGAAAACGTTATACACAGAATCTT 58.834 34.615 0.00 0.00 0.00 2.40
251 252 6.708285 AGGGAAAACGTTATACACAGAATCT 58.292 36.000 0.00 0.00 0.00 2.40
252 253 6.980051 AGGGAAAACGTTATACACAGAATC 57.020 37.500 0.00 0.00 0.00 2.52
253 254 7.618137 ACTAGGGAAAACGTTATACACAGAAT 58.382 34.615 0.00 0.00 0.00 2.40
254 255 6.996509 ACTAGGGAAAACGTTATACACAGAA 58.003 36.000 0.00 0.00 0.00 3.02
255 256 6.594788 ACTAGGGAAAACGTTATACACAGA 57.405 37.500 0.00 0.00 0.00 3.41
256 257 7.487189 CACTACTAGGGAAAACGTTATACACAG 59.513 40.741 0.00 0.00 0.00 3.66
257 258 7.176515 TCACTACTAGGGAAAACGTTATACACA 59.823 37.037 0.00 0.00 0.00 3.72
258 259 7.538575 TCACTACTAGGGAAAACGTTATACAC 58.461 38.462 0.00 0.00 0.00 2.90
259 260 7.701539 TCACTACTAGGGAAAACGTTATACA 57.298 36.000 0.00 0.00 0.00 2.29
260 261 7.489435 GGTTCACTACTAGGGAAAACGTTATAC 59.511 40.741 0.00 0.00 39.70 1.47
261 262 7.363793 GGGTTCACTACTAGGGAAAACGTTATA 60.364 40.741 0.00 0.00 39.70 0.98
262 263 6.401394 GGTTCACTACTAGGGAAAACGTTAT 58.599 40.000 0.00 0.00 39.70 1.89
263 264 5.279456 GGGTTCACTACTAGGGAAAACGTTA 60.279 44.000 0.00 0.00 39.70 3.18
264 265 4.503817 GGGTTCACTACTAGGGAAAACGTT 60.504 45.833 2.11 0.00 39.70 3.99
265 266 3.007290 GGGTTCACTACTAGGGAAAACGT 59.993 47.826 2.11 0.00 39.70 3.99
266 267 3.593096 GGGTTCACTACTAGGGAAAACG 58.407 50.000 2.11 0.00 39.70 3.60
267 268 3.586174 AGGGGTTCACTACTAGGGAAAAC 59.414 47.826 2.11 0.00 39.70 2.43
268 269 3.878086 AGGGGTTCACTACTAGGGAAAA 58.122 45.455 2.11 0.00 39.70 2.29
269 270 3.572661 AGGGGTTCACTACTAGGGAAA 57.427 47.619 2.11 0.00 39.70 3.13
270 271 3.572661 AAGGGGTTCACTACTAGGGAA 57.427 47.619 0.00 0.00 34.77 3.97
271 272 3.572661 AAAGGGGTTCACTACTAGGGA 57.427 47.619 0.00 0.00 0.00 4.20
272 273 4.038883 CGATAAAGGGGTTCACTACTAGGG 59.961 50.000 0.00 0.00 0.00 3.53
273 274 4.501058 GCGATAAAGGGGTTCACTACTAGG 60.501 50.000 0.00 0.00 0.00 3.02
274 275 4.098960 TGCGATAAAGGGGTTCACTACTAG 59.901 45.833 0.00 0.00 0.00 2.57
275 276 4.025360 TGCGATAAAGGGGTTCACTACTA 58.975 43.478 0.00 0.00 0.00 1.82
276 277 2.835764 TGCGATAAAGGGGTTCACTACT 59.164 45.455 0.00 0.00 0.00 2.57
277 278 3.255969 TGCGATAAAGGGGTTCACTAC 57.744 47.619 0.00 0.00 0.00 2.73
278 279 4.196193 CAATGCGATAAAGGGGTTCACTA 58.804 43.478 0.00 0.00 0.00 2.74
279 280 3.016736 CAATGCGATAAAGGGGTTCACT 58.983 45.455 0.00 0.00 0.00 3.41
280 281 2.099098 CCAATGCGATAAAGGGGTTCAC 59.901 50.000 0.00 0.00 0.00 3.18
281 282 2.374184 CCAATGCGATAAAGGGGTTCA 58.626 47.619 0.00 0.00 0.00 3.18
282 283 1.681264 CCCAATGCGATAAAGGGGTTC 59.319 52.381 0.00 0.00 35.83 3.62
283 284 1.006639 ACCCAATGCGATAAAGGGGTT 59.993 47.619 0.00 0.00 46.33 4.11
284 285 0.629058 ACCCAATGCGATAAAGGGGT 59.371 50.000 0.00 0.00 43.96 4.95
285 286 1.032014 CACCCAATGCGATAAAGGGG 58.968 55.000 0.00 0.00 43.96 4.79
286 287 0.385390 GCACCCAATGCGATAAAGGG 59.615 55.000 0.00 0.00 46.55 3.95
287 288 3.944871 GCACCCAATGCGATAAAGG 57.055 52.632 0.00 0.00 46.55 3.11
296 297 2.886862 TCAAACACTTGCACCCAATG 57.113 45.000 0.00 0.00 32.14 2.82
297 298 3.134442 ACAATCAAACACTTGCACCCAAT 59.866 39.130 0.00 0.00 32.14 3.16
298 299 2.499289 ACAATCAAACACTTGCACCCAA 59.501 40.909 0.00 0.00 32.14 4.12
299 300 2.106566 ACAATCAAACACTTGCACCCA 58.893 42.857 0.00 0.00 32.14 4.51
300 301 2.888834 ACAATCAAACACTTGCACCC 57.111 45.000 0.00 0.00 32.14 4.61
301 302 3.932089 ACAAACAATCAAACACTTGCACC 59.068 39.130 0.00 0.00 32.14 5.01
302 303 4.724602 GCACAAACAATCAAACACTTGCAC 60.725 41.667 0.00 0.00 32.14 4.57
303 304 3.370366 GCACAAACAATCAAACACTTGCA 59.630 39.130 0.00 0.00 32.14 4.08
304 305 3.370366 TGCACAAACAATCAAACACTTGC 59.630 39.130 0.00 0.00 32.14 4.01
305 306 4.033129 CCTGCACAAACAATCAAACACTTG 59.967 41.667 0.00 0.00 0.00 3.16
306 307 4.183101 CCTGCACAAACAATCAAACACTT 58.817 39.130 0.00 0.00 0.00 3.16
307 308 3.195396 ACCTGCACAAACAATCAAACACT 59.805 39.130 0.00 0.00 0.00 3.55
308 309 3.306703 CACCTGCACAAACAATCAAACAC 59.693 43.478 0.00 0.00 0.00 3.32
309 310 3.519579 CACCTGCACAAACAATCAAACA 58.480 40.909 0.00 0.00 0.00 2.83
310 311 2.284952 GCACCTGCACAAACAATCAAAC 59.715 45.455 0.00 0.00 41.59 2.93
311 312 2.548875 GCACCTGCACAAACAATCAAA 58.451 42.857 0.00 0.00 41.59 2.69
312 313 2.222007 GCACCTGCACAAACAATCAA 57.778 45.000 0.00 0.00 41.59 2.57
313 314 3.963676 GCACCTGCACAAACAATCA 57.036 47.368 0.00 0.00 41.59 2.57
324 325 0.183492 TCCCCAATAGATGCACCTGC 59.817 55.000 0.00 0.00 42.50 4.85
325 326 1.492176 AGTCCCCAATAGATGCACCTG 59.508 52.381 0.00 0.00 0.00 4.00
326 327 1.898863 AGTCCCCAATAGATGCACCT 58.101 50.000 0.00 0.00 0.00 4.00
327 328 2.301346 CAAGTCCCCAATAGATGCACC 58.699 52.381 0.00 0.00 0.00 5.01
328 329 1.678101 GCAAGTCCCCAATAGATGCAC 59.322 52.381 0.00 0.00 32.80 4.57
329 330 1.746861 CGCAAGTCCCCAATAGATGCA 60.747 52.381 0.00 0.00 32.80 3.96
330 331 0.947244 CGCAAGTCCCCAATAGATGC 59.053 55.000 0.00 0.00 0.00 3.91
342 343 4.406992 CCAGTAGGAGAAACACGCAAGTC 61.407 52.174 0.00 0.00 44.98 3.01
344 345 2.069273 CCAGTAGGAGAAACACGCAAG 58.931 52.381 0.00 0.00 40.16 4.01
345 346 1.689813 TCCAGTAGGAGAAACACGCAA 59.310 47.619 0.00 0.00 39.61 4.85
346 347 1.334160 TCCAGTAGGAGAAACACGCA 58.666 50.000 0.00 0.00 39.61 5.24
357 358 7.072263 AGAATCAAGGTATCAATCCAGTAGG 57.928 40.000 0.00 0.00 0.00 3.18
359 360 9.832445 GTTAAGAATCAAGGTATCAATCCAGTA 57.168 33.333 0.00 0.00 0.00 2.74
360 361 8.552296 AGTTAAGAATCAAGGTATCAATCCAGT 58.448 33.333 0.00 0.00 0.00 4.00
361 362 8.834465 CAGTTAAGAATCAAGGTATCAATCCAG 58.166 37.037 0.00 0.00 0.00 3.86
362 363 8.548025 TCAGTTAAGAATCAAGGTATCAATCCA 58.452 33.333 0.00 0.00 0.00 3.41
363 364 8.964476 TCAGTTAAGAATCAAGGTATCAATCC 57.036 34.615 0.00 0.00 0.00 3.01
364 365 9.050601 CCTCAGTTAAGAATCAAGGTATCAATC 57.949 37.037 0.00 0.00 0.00 2.67
365 366 7.995488 CCCTCAGTTAAGAATCAAGGTATCAAT 59.005 37.037 0.00 0.00 0.00 2.57
366 367 7.182026 TCCCTCAGTTAAGAATCAAGGTATCAA 59.818 37.037 0.00 0.00 0.00 2.57
367 368 6.672218 TCCCTCAGTTAAGAATCAAGGTATCA 59.328 38.462 0.00 0.00 0.00 2.15
368 369 7.125792 TCCCTCAGTTAAGAATCAAGGTATC 57.874 40.000 0.00 0.00 0.00 2.24
369 370 7.510675 TTCCCTCAGTTAAGAATCAAGGTAT 57.489 36.000 0.00 0.00 0.00 2.73
370 371 6.945636 TTCCCTCAGTTAAGAATCAAGGTA 57.054 37.500 0.00 0.00 0.00 3.08
371 372 5.843019 TTCCCTCAGTTAAGAATCAAGGT 57.157 39.130 0.00 0.00 0.00 3.50
372 373 8.049721 AGTATTTCCCTCAGTTAAGAATCAAGG 58.950 37.037 0.00 0.00 0.00 3.61
373 374 9.454859 AAGTATTTCCCTCAGTTAAGAATCAAG 57.545 33.333 0.00 0.00 0.00 3.02
379 380 9.716556 AGAGATAAGTATTTCCCTCAGTTAAGA 57.283 33.333 0.00 0.00 0.00 2.10
386 387 9.026121 GCATAGTAGAGATAAGTATTTCCCTCA 57.974 37.037 0.00 0.00 0.00 3.86
387 388 9.026121 TGCATAGTAGAGATAAGTATTTCCCTC 57.974 37.037 0.00 0.00 0.00 4.30
388 389 8.958060 TGCATAGTAGAGATAAGTATTTCCCT 57.042 34.615 0.00 0.00 0.00 4.20
389 390 7.762159 GCTGCATAGTAGAGATAAGTATTTCCC 59.238 40.741 0.00 0.00 0.00 3.97
390 391 7.486551 CGCTGCATAGTAGAGATAAGTATTTCC 59.513 40.741 0.00 0.00 0.00 3.13
391 392 8.024285 ACGCTGCATAGTAGAGATAAGTATTTC 58.976 37.037 0.00 0.00 0.00 2.17
392 393 7.887381 ACGCTGCATAGTAGAGATAAGTATTT 58.113 34.615 0.00 0.00 0.00 1.40
393 394 7.175119 TGACGCTGCATAGTAGAGATAAGTATT 59.825 37.037 0.00 0.00 0.00 1.89
394 395 6.655425 TGACGCTGCATAGTAGAGATAAGTAT 59.345 38.462 0.00 0.00 0.00 2.12
395 396 5.995897 TGACGCTGCATAGTAGAGATAAGTA 59.004 40.000 0.00 0.00 0.00 2.24
396 397 4.822350 TGACGCTGCATAGTAGAGATAAGT 59.178 41.667 0.00 0.00 0.00 2.24
397 398 5.150683 GTGACGCTGCATAGTAGAGATAAG 58.849 45.833 0.00 0.00 0.00 1.73
398 399 4.023107 GGTGACGCTGCATAGTAGAGATAA 60.023 45.833 0.00 0.00 0.00 1.75
399 400 3.502595 GGTGACGCTGCATAGTAGAGATA 59.497 47.826 0.00 0.00 0.00 1.98
400 401 2.294791 GGTGACGCTGCATAGTAGAGAT 59.705 50.000 0.00 0.00 0.00 2.75
401 402 1.676529 GGTGACGCTGCATAGTAGAGA 59.323 52.381 0.00 0.00 0.00 3.10
402 403 1.269309 GGGTGACGCTGCATAGTAGAG 60.269 57.143 0.00 0.00 0.00 2.43
403 404 0.744874 GGGTGACGCTGCATAGTAGA 59.255 55.000 0.00 0.00 0.00 2.59
404 405 0.747255 AGGGTGACGCTGCATAGTAG 59.253 55.000 0.00 0.00 0.00 2.57
405 406 1.191535 AAGGGTGACGCTGCATAGTA 58.808 50.000 1.94 0.00 0.00 1.82
406 407 0.324943 AAAGGGTGACGCTGCATAGT 59.675 50.000 1.94 0.00 0.00 2.12
407 408 1.009829 GAAAGGGTGACGCTGCATAG 58.990 55.000 1.94 0.00 0.00 2.23
408 409 0.323302 TGAAAGGGTGACGCTGCATA 59.677 50.000 1.94 0.00 0.00 3.14
409 410 0.322816 ATGAAAGGGTGACGCTGCAT 60.323 50.000 1.94 7.61 0.00 3.96
410 411 0.955428 GATGAAAGGGTGACGCTGCA 60.955 55.000 1.94 5.45 0.00 4.41
411 412 0.674895 AGATGAAAGGGTGACGCTGC 60.675 55.000 1.94 0.00 0.00 5.25
412 413 1.734465 GAAGATGAAAGGGTGACGCTG 59.266 52.381 1.94 0.00 0.00 5.18
413 414 1.347707 TGAAGATGAAAGGGTGACGCT 59.652 47.619 0.00 0.00 0.00 5.07
414 415 1.808411 TGAAGATGAAAGGGTGACGC 58.192 50.000 0.00 0.00 0.00 5.19
415 416 2.744202 CCTTGAAGATGAAAGGGTGACG 59.256 50.000 0.00 0.00 39.49 4.35
421 422 5.070313 TGGTTTTTCCCTTGAAGATGAAAGG 59.930 40.000 0.00 0.00 42.29 3.11
422 423 6.160576 TGGTTTTTCCCTTGAAGATGAAAG 57.839 37.500 0.00 0.00 34.77 2.62
423 424 6.345298 GTTGGTTTTTCCCTTGAAGATGAAA 58.655 36.000 0.00 0.00 34.77 2.69
424 425 5.451242 CGTTGGTTTTTCCCTTGAAGATGAA 60.451 40.000 0.00 0.00 34.77 2.57
425 426 4.037446 CGTTGGTTTTTCCCTTGAAGATGA 59.963 41.667 0.00 0.00 34.77 2.92
426 427 4.298332 CGTTGGTTTTTCCCTTGAAGATG 58.702 43.478 0.00 0.00 34.77 2.90
427 428 3.243737 GCGTTGGTTTTTCCCTTGAAGAT 60.244 43.478 0.00 0.00 34.77 2.40
428 429 2.100087 GCGTTGGTTTTTCCCTTGAAGA 59.900 45.455 0.00 0.00 34.77 2.87
429 430 2.469826 GCGTTGGTTTTTCCCTTGAAG 58.530 47.619 0.00 0.00 34.77 3.02
430 431 1.202313 CGCGTTGGTTTTTCCCTTGAA 60.202 47.619 0.00 0.00 34.77 2.69
431 432 0.382515 CGCGTTGGTTTTTCCCTTGA 59.617 50.000 0.00 0.00 34.77 3.02
432 433 0.382515 TCGCGTTGGTTTTTCCCTTG 59.617 50.000 5.77 0.00 34.77 3.61
433 434 0.666374 CTCGCGTTGGTTTTTCCCTT 59.334 50.000 5.77 0.00 34.77 3.95
434 435 1.792118 GCTCGCGTTGGTTTTTCCCT 61.792 55.000 5.77 0.00 34.77 4.20
435 436 1.371267 GCTCGCGTTGGTTTTTCCC 60.371 57.895 5.77 0.00 34.77 3.97
436 437 0.385598 GAGCTCGCGTTGGTTTTTCC 60.386 55.000 5.77 0.00 0.00 3.13
437 438 0.306533 TGAGCTCGCGTTGGTTTTTC 59.693 50.000 9.64 0.00 0.00 2.29
438 439 0.736053 TTGAGCTCGCGTTGGTTTTT 59.264 45.000 9.64 0.00 0.00 1.94
439 440 0.307760 CTTGAGCTCGCGTTGGTTTT 59.692 50.000 9.64 0.00 0.00 2.43
440 441 0.531974 TCTTGAGCTCGCGTTGGTTT 60.532 50.000 9.64 0.00 0.00 3.27
441 442 0.531974 TTCTTGAGCTCGCGTTGGTT 60.532 50.000 9.64 0.00 0.00 3.67
442 443 0.946221 CTTCTTGAGCTCGCGTTGGT 60.946 55.000 9.64 6.10 0.00 3.67
443 444 0.946221 ACTTCTTGAGCTCGCGTTGG 60.946 55.000 9.64 0.00 0.00 3.77
444 445 1.651138 CTACTTCTTGAGCTCGCGTTG 59.349 52.381 9.64 1.17 0.00 4.10
445 446 1.983972 CTACTTCTTGAGCTCGCGTT 58.016 50.000 9.64 0.00 0.00 4.84
446 447 0.456995 GCTACTTCTTGAGCTCGCGT 60.457 55.000 9.64 4.02 35.73 6.01
447 448 0.456824 TGCTACTTCTTGAGCTCGCG 60.457 55.000 9.64 0.00 39.54 5.87
448 449 0.995728 GTGCTACTTCTTGAGCTCGC 59.004 55.000 9.64 4.09 39.54 5.03
449 450 1.634702 GGTGCTACTTCTTGAGCTCG 58.365 55.000 9.64 0.00 39.54 5.03
450 451 1.406205 GGGGTGCTACTTCTTGAGCTC 60.406 57.143 6.82 6.82 39.54 4.09
451 452 0.615850 GGGGTGCTACTTCTTGAGCT 59.384 55.000 0.00 0.00 39.54 4.09
452 453 0.615850 AGGGGTGCTACTTCTTGAGC 59.384 55.000 0.00 0.00 39.25 4.26
453 454 2.183679 AGAGGGGTGCTACTTCTTGAG 58.816 52.381 0.00 0.00 0.00 3.02
454 455 2.327325 AGAGGGGTGCTACTTCTTGA 57.673 50.000 0.00 0.00 0.00 3.02
455 456 3.131400 GTCTAGAGGGGTGCTACTTCTTG 59.869 52.174 0.00 0.00 0.00 3.02
456 457 3.011934 AGTCTAGAGGGGTGCTACTTCTT 59.988 47.826 0.00 0.00 0.00 2.52
457 458 2.583566 AGTCTAGAGGGGTGCTACTTCT 59.416 50.000 0.00 0.00 0.00 2.85
458 459 3.021177 AGTCTAGAGGGGTGCTACTTC 57.979 52.381 0.00 0.00 0.00 3.01
459 460 4.079096 ACATAGTCTAGAGGGGTGCTACTT 60.079 45.833 0.00 0.00 0.00 2.24
460 461 3.464080 ACATAGTCTAGAGGGGTGCTACT 59.536 47.826 0.00 0.00 0.00 2.57
461 462 3.834938 ACATAGTCTAGAGGGGTGCTAC 58.165 50.000 0.00 0.00 0.00 3.58
462 463 4.537945 AACATAGTCTAGAGGGGTGCTA 57.462 45.455 0.00 0.00 0.00 3.49
463 464 3.406512 AACATAGTCTAGAGGGGTGCT 57.593 47.619 0.00 0.00 0.00 4.40
464 465 5.609533 TTTAACATAGTCTAGAGGGGTGC 57.390 43.478 0.00 0.00 0.00 5.01
465 466 7.361457 TCATTTAACATAGTCTAGAGGGGTG 57.639 40.000 0.00 0.00 0.00 4.61
514 515 3.741388 CGACCAAAACCAGCCTAGGATAG 60.741 52.174 14.75 0.50 38.80 2.08
558 561 6.143118 CGACCTAATGATCGTTGAGAAAGATC 59.857 42.308 10.54 5.58 43.72 2.75
559 562 5.980116 CGACCTAATGATCGTTGAGAAAGAT 59.020 40.000 10.54 0.00 33.63 2.40
575 578 8.938906 ACACATACGAATTTAAAACGACCTAAT 58.061 29.630 19.58 4.45 0.00 1.73
653 656 2.910199 TCATGTAGAAGAGGTGCATGC 58.090 47.619 11.82 11.82 37.77 4.06
716 721 7.945033 TGATTTATGTTTTGCTCTTGGTTTC 57.055 32.000 0.00 0.00 0.00 2.78
723 728 7.927629 TCTTTTGCTTGATTTATGTTTTGCTCT 59.072 29.630 0.00 0.00 0.00 4.09
774 779 9.376075 TCTTAATTTGTTTTCTTGCATTGTTGA 57.624 25.926 0.00 0.00 0.00 3.18
970 975 1.621814 GCCATCCCTTACATACGGCTA 59.378 52.381 0.00 0.00 35.17 3.93
1056 1061 5.827267 TGGTTTGATATGTGGTGATGGTATG 59.173 40.000 0.00 0.00 0.00 2.39
1250 1255 2.349590 CATTCAACCTCATGCGAGACA 58.650 47.619 0.00 0.00 42.34 3.41
1268 1273 5.819901 GTCTTCTTCTTTGTAGCCATAGCAT 59.180 40.000 0.00 0.00 43.56 3.79
1670 1676 0.605319 CGGCCTAACAAACTGGAGCA 60.605 55.000 0.00 0.00 0.00 4.26
1694 1700 1.275010 TCGCCTTCTGCAACTCATACA 59.725 47.619 0.00 0.00 41.33 2.29
1822 1828 2.505364 ATCCCTCCTTGGTTGGCAGC 62.505 60.000 0.00 0.00 0.00 5.25
1990 2011 1.412361 CCCCTTGTTTGGGTTCAGGAA 60.412 52.381 0.00 0.00 45.70 3.36
2053 2074 8.786826 ACCTCGTCAAAATCATTTATTCTACA 57.213 30.769 0.00 0.00 0.00 2.74
2167 2193 5.091261 ACATTAACCAACCAGTTTTTGCA 57.909 34.783 0.00 0.00 0.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.