Multiple sequence alignment - TraesCS2A01G483600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G483600 chr2A 100.000 2624 0 0 1 2624 719345745 719343122 0.000000e+00 4846
1 TraesCS2A01G483600 chr2D 93.133 1063 63 10 1404 2459 585127910 585126851 0.000000e+00 1550
2 TraesCS2A01G483600 chr2D 87.851 996 63 21 434 1408 585134122 585133164 0.000000e+00 1116
3 TraesCS2A01G483600 chr2D 94.479 163 9 0 2455 2617 156198247 156198409 4.340000e-63 252
4 TraesCS2A01G483600 chr2B 88.551 987 81 17 434 1402 705886922 705885950 0.000000e+00 1168
5 TraesCS2A01G483600 chr2B 93.082 636 32 6 1398 2023 705885871 705885238 0.000000e+00 920
6 TraesCS2A01G483600 chr2B 91.268 355 28 3 2106 2459 705885230 705884878 5.080000e-132 481
7 TraesCS2A01G483600 chr6A 88.679 212 21 2 1 212 615046907 615046699 3.350000e-64 255
8 TraesCS2A01G483600 chr3B 88.073 218 23 2 1 217 828935003 828935218 3.350000e-64 255
9 TraesCS2A01G483600 chr7D 88.679 212 19 2 1 212 49806800 49806594 1.210000e-63 254
10 TraesCS2A01G483600 chr7D 93.902 164 10 0 2455 2618 441858365 441858528 5.610000e-62 248
11 TraesCS2A01G483600 chr7D 92.814 167 12 0 2458 2624 229791788 229791622 2.610000e-60 243
12 TraesCS2A01G483600 chr4D 95.031 161 8 0 2458 2618 149173908 149174068 1.210000e-63 254
13 TraesCS2A01G483600 chr4D 93.413 167 11 0 2458 2624 38523828 38523662 5.610000e-62 248
14 TraesCS2A01G483600 chrUn 88.208 212 21 1 1 212 171907427 171907634 1.560000e-62 250
15 TraesCS2A01G483600 chrUn 88.208 212 21 1 1 212 287879284 287879491 1.560000e-62 250
16 TraesCS2A01G483600 chrUn 86.758 219 27 1 1 217 23376152 23375934 2.610000e-60 243
17 TraesCS2A01G483600 chrUn 86.758 219 27 1 1 217 23379556 23379338 2.610000e-60 243
18 TraesCS2A01G483600 chr3A 93.413 167 11 0 2458 2624 310636475 310636309 5.610000e-62 248
19 TraesCS2A01G483600 chr3A 92.899 169 12 0 2456 2624 739710399 739710231 2.020000e-61 246
20 TraesCS2A01G483600 chr1D 93.413 167 11 0 2458 2624 163328895 163328729 5.610000e-62 248
21 TraesCS2A01G483600 chr5D 87.793 213 22 3 1 212 120920875 120921084 2.020000e-61 246
22 TraesCS2A01G483600 chr3D 92.814 167 12 0 2458 2624 440238485 440238319 2.610000e-60 243
23 TraesCS2A01G483600 chr1B 87.156 218 22 3 1 217 683991965 683992177 2.610000e-60 243


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G483600 chr2A 719343122 719345745 2623 True 4846.000000 4846 100.000 1 2624 1 chr2A.!!$R1 2623
1 TraesCS2A01G483600 chr2D 585126851 585127910 1059 True 1550.000000 1550 93.133 1404 2459 1 chr2D.!!$R1 1055
2 TraesCS2A01G483600 chr2D 585133164 585134122 958 True 1116.000000 1116 87.851 434 1408 1 chr2D.!!$R2 974
3 TraesCS2A01G483600 chr2B 705884878 705886922 2044 True 856.333333 1168 90.967 434 2459 3 chr2B.!!$R1 2025
4 TraesCS2A01G483600 chrUn 23375934 23379556 3622 True 243.000000 243 86.758 1 217 2 chrUn.!!$R1 216


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
312 315 0.035152 ATGATGCACGCTGGGAAAGA 60.035 50.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1786 2340 2.49647 AGGAAACATCTGGTACGTCCTC 59.504 50.0 0.0 0.0 32.67 3.71 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.422597 TCAGAATTTTCGGTGATGCGT 58.577 42.857 0.00 0.00 0.00 5.24
24 25 3.997681 TCAGAATTTTCGGTGATGCGTAA 59.002 39.130 0.00 0.00 0.00 3.18
26 27 5.813157 TCAGAATTTTCGGTGATGCGTAATA 59.187 36.000 0.00 0.00 0.00 0.98
31 32 2.816689 TCGGTGATGCGTAATAAGTGG 58.183 47.619 0.00 0.00 0.00 4.00
74 75 0.108756 GAGGTGCCTACGGTGACTTC 60.109 60.000 0.00 0.00 0.00 3.01
83 84 4.152938 GCCTACGGTGACTTCGTAAATTTT 59.847 41.667 0.00 0.00 41.62 1.82
99 100 9.537192 TCGTAAATTTTAAGATGATATGTCGGT 57.463 29.630 0.00 0.00 0.00 4.69
114 115 1.268899 GTCGGTTCAGTCTTTCGGAGA 59.731 52.381 0.00 0.00 0.00 3.71
116 117 3.128242 GTCGGTTCAGTCTTTCGGAGATA 59.872 47.826 0.00 0.00 36.61 1.98
140 141 1.196104 TAGGGGTAGGGTGTGTGTGC 61.196 60.000 0.00 0.00 0.00 4.57
181 184 5.084722 GGTGAGTGTATACGCGTGTATATC 58.915 45.833 26.67 20.93 43.52 1.63
183 186 5.789021 GTGAGTGTATACGCGTGTATATCAG 59.211 44.000 26.67 0.00 43.52 2.90
192 195 0.508641 GTGTATATCAGCGCTTGCGG 59.491 55.000 7.50 0.00 45.69 5.69
193 196 0.104120 TGTATATCAGCGCTTGCGGT 59.896 50.000 7.50 14.02 45.69 5.68
207 210 3.242804 GCTTGCGGTTGTACTGTGTTAAA 60.243 43.478 0.00 0.00 0.00 1.52
228 231 3.726291 AAAAGAATTGGACCAACGTGG 57.274 42.857 9.67 0.00 45.02 4.94
229 232 1.616159 AAGAATTGGACCAACGTGGG 58.384 50.000 9.67 7.67 43.37 4.61
230 233 0.251165 AGAATTGGACCAACGTGGGG 60.251 55.000 15.05 9.59 43.37 4.96
231 234 0.538746 GAATTGGACCAACGTGGGGT 60.539 55.000 15.05 13.18 43.37 4.95
232 235 0.772384 AATTGGACCAACGTGGGGTA 59.228 50.000 15.05 0.00 43.37 3.69
233 236 0.996583 ATTGGACCAACGTGGGGTAT 59.003 50.000 15.05 0.91 43.37 2.73
234 237 0.772384 TTGGACCAACGTGGGGTATT 59.228 50.000 15.05 0.00 43.37 1.89
235 238 0.772384 TGGACCAACGTGGGGTATTT 59.228 50.000 15.05 0.00 43.37 1.40
236 239 1.271488 TGGACCAACGTGGGGTATTTC 60.271 52.381 15.05 0.39 43.37 2.17
237 240 1.456296 GACCAACGTGGGGTATTTCC 58.544 55.000 15.05 0.00 43.37 3.13
238 241 1.003928 GACCAACGTGGGGTATTTCCT 59.996 52.381 15.05 0.00 43.37 3.36
239 242 1.003928 ACCAACGTGGGGTATTTCCTC 59.996 52.381 15.05 0.00 43.37 3.71
240 243 1.365699 CAACGTGGGGTATTTCCTCG 58.634 55.000 0.00 0.00 44.04 4.63
241 244 2.674958 ACGTGGGGTATTTCCTCGT 58.325 52.632 4.69 4.69 45.70 4.18
242 245 3.357504 CGTGGGGTATTTCCTCGTC 57.642 57.895 0.00 0.00 40.23 4.20
243 246 0.822164 CGTGGGGTATTTCCTCGTCT 59.178 55.000 0.00 0.00 40.23 4.18
244 247 2.026641 CGTGGGGTATTTCCTCGTCTA 58.973 52.381 0.00 0.00 40.23 2.59
245 248 2.428171 CGTGGGGTATTTCCTCGTCTAA 59.572 50.000 0.00 0.00 40.23 2.10
246 249 3.736126 CGTGGGGTATTTCCTCGTCTAAC 60.736 52.174 0.00 0.00 40.23 2.34
247 250 3.450096 GTGGGGTATTTCCTCGTCTAACT 59.550 47.826 0.00 0.00 40.23 2.24
248 251 4.646492 GTGGGGTATTTCCTCGTCTAACTA 59.354 45.833 0.00 0.00 40.23 2.24
249 252 5.127682 GTGGGGTATTTCCTCGTCTAACTAA 59.872 44.000 0.00 0.00 40.23 2.24
250 253 5.127682 TGGGGTATTTCCTCGTCTAACTAAC 59.872 44.000 0.00 0.00 40.23 2.34
251 254 5.277047 GGGTATTTCCTCGTCTAACTAACG 58.723 45.833 0.00 0.00 41.39 3.18
252 255 4.737279 GGTATTTCCTCGTCTAACTAACGC 59.263 45.833 0.00 0.00 39.90 4.84
253 256 2.927553 TTCCTCGTCTAACTAACGCC 57.072 50.000 0.00 0.00 39.90 5.68
254 257 2.119801 TCCTCGTCTAACTAACGCCT 57.880 50.000 0.00 0.00 39.90 5.52
255 258 1.741706 TCCTCGTCTAACTAACGCCTG 59.258 52.381 0.00 0.00 39.90 4.85
256 259 1.546834 CTCGTCTAACTAACGCCTGC 58.453 55.000 0.00 0.00 39.90 4.85
257 260 0.179181 TCGTCTAACTAACGCCTGCG 60.179 55.000 10.40 10.40 46.03 5.18
270 273 1.284982 GCCTGCGTGCGTCATATAGG 61.285 60.000 0.00 0.00 0.00 2.57
275 278 1.666311 GCGTGCGTCATATAGGAGGAC 60.666 57.143 11.02 5.17 35.45 3.85
277 280 2.095668 CGTGCGTCATATAGGAGGACTC 60.096 54.545 11.02 3.36 36.69 3.36
281 284 3.189702 GCGTCATATAGGAGGACTCAGAC 59.810 52.174 11.02 0.00 36.69 3.51
283 286 5.067273 CGTCATATAGGAGGACTCAGACTT 58.933 45.833 0.91 0.00 36.69 3.01
287 290 4.618378 ATAGGAGGACTCAGACTTTCCT 57.382 45.455 1.32 6.16 42.79 3.36
288 291 5.735733 ATAGGAGGACTCAGACTTTCCTA 57.264 43.478 9.19 9.19 40.02 2.94
289 292 4.618378 AGGAGGACTCAGACTTTCCTAT 57.382 45.455 1.32 0.00 40.02 2.57
290 293 4.285863 AGGAGGACTCAGACTTTCCTATG 58.714 47.826 1.32 0.00 40.02 2.23
291 294 3.386402 GGAGGACTCAGACTTTCCTATGG 59.614 52.174 1.32 0.00 40.02 2.74
294 297 5.284582 AGGACTCAGACTTTCCTATGGAAT 58.715 41.667 0.00 0.00 41.71 3.01
296 299 5.129485 GGACTCAGACTTTCCTATGGAATGA 59.871 44.000 15.93 8.89 41.71 2.57
299 302 5.371526 TCAGACTTTCCTATGGAATGATGC 58.628 41.667 15.93 7.41 41.71 3.91
301 304 5.008415 CAGACTTTCCTATGGAATGATGCAC 59.992 44.000 15.93 0.00 41.71 4.57
302 305 3.879295 ACTTTCCTATGGAATGATGCACG 59.121 43.478 15.93 0.00 41.71 5.34
303 306 1.882912 TCCTATGGAATGATGCACGC 58.117 50.000 0.00 0.00 0.00 5.34
304 307 1.417517 TCCTATGGAATGATGCACGCT 59.582 47.619 0.00 0.00 0.00 5.07
305 308 1.534163 CCTATGGAATGATGCACGCTG 59.466 52.381 0.00 0.00 0.00 5.18
306 309 1.534163 CTATGGAATGATGCACGCTGG 59.466 52.381 0.00 0.00 0.00 4.85
308 311 1.451927 GGAATGATGCACGCTGGGA 60.452 57.895 0.00 0.00 0.00 4.37
310 313 0.810648 GAATGATGCACGCTGGGAAA 59.189 50.000 0.00 0.00 0.00 3.13
311 314 0.813184 AATGATGCACGCTGGGAAAG 59.187 50.000 0.00 0.00 0.00 2.62
312 315 0.035152 ATGATGCACGCTGGGAAAGA 60.035 50.000 0.00 0.00 0.00 2.52
313 316 0.250684 TGATGCACGCTGGGAAAGAA 60.251 50.000 0.00 0.00 0.00 2.52
314 317 0.881118 GATGCACGCTGGGAAAGAAA 59.119 50.000 0.00 0.00 0.00 2.52
315 318 1.269448 GATGCACGCTGGGAAAGAAAA 59.731 47.619 0.00 0.00 0.00 2.29
316 319 0.667993 TGCACGCTGGGAAAGAAAAG 59.332 50.000 0.00 0.00 0.00 2.27
317 320 0.951558 GCACGCTGGGAAAGAAAAGA 59.048 50.000 0.00 0.00 0.00 2.52
318 321 1.541588 GCACGCTGGGAAAGAAAAGAT 59.458 47.619 0.00 0.00 0.00 2.40
319 322 2.747446 GCACGCTGGGAAAGAAAAGATA 59.253 45.455 0.00 0.00 0.00 1.98
320 323 3.426292 GCACGCTGGGAAAGAAAAGATAC 60.426 47.826 0.00 0.00 0.00 2.24
321 324 4.003648 CACGCTGGGAAAGAAAAGATACT 58.996 43.478 0.00 0.00 0.00 2.12
322 325 5.175859 CACGCTGGGAAAGAAAAGATACTA 58.824 41.667 0.00 0.00 0.00 1.82
323 326 5.642063 CACGCTGGGAAAGAAAAGATACTAA 59.358 40.000 0.00 0.00 0.00 2.24
324 327 5.875359 ACGCTGGGAAAGAAAAGATACTAAG 59.125 40.000 0.00 0.00 0.00 2.18
326 329 6.594159 CGCTGGGAAAGAAAAGATACTAAGAA 59.406 38.462 0.00 0.00 0.00 2.52
328 331 8.237949 GCTGGGAAAGAAAAGATACTAAGAAAC 58.762 37.037 0.00 0.00 0.00 2.78
330 333 8.221944 TGGGAAAGAAAAGATACTAAGAAACCA 58.778 33.333 0.00 0.00 0.00 3.67
335 338 9.503399 AAGAAAAGATACTAAGAAACCACGATT 57.497 29.630 0.00 0.00 0.00 3.34
336 339 9.152595 AGAAAAGATACTAAGAAACCACGATTC 57.847 33.333 0.00 0.00 0.00 2.52
337 340 7.845066 AAAGATACTAAGAAACCACGATTCC 57.155 36.000 0.00 0.00 0.00 3.01
339 342 7.184067 AGATACTAAGAAACCACGATTCCTT 57.816 36.000 0.00 0.00 0.00 3.36
340 343 7.621796 AGATACTAAGAAACCACGATTCCTTT 58.378 34.615 0.00 0.00 0.00 3.11
343 346 7.668525 ACTAAGAAACCACGATTCCTTTAAG 57.331 36.000 0.00 0.00 0.00 1.85
344 347 5.959618 AAGAAACCACGATTCCTTTAAGG 57.040 39.130 4.29 4.29 36.46 2.69
345 348 3.756963 AGAAACCACGATTCCTTTAAGGC 59.243 43.478 6.05 0.00 34.61 4.35
346 349 1.734163 ACCACGATTCCTTTAAGGCG 58.266 50.000 6.05 7.03 34.61 5.52
347 350 1.276989 ACCACGATTCCTTTAAGGCGA 59.723 47.619 14.54 3.41 34.61 5.54
350 353 1.997606 ACGATTCCTTTAAGGCGAACG 59.002 47.619 14.54 13.39 34.61 3.95
351 354 1.326548 CGATTCCTTTAAGGCGAACGG 59.673 52.381 6.05 0.00 34.61 4.44
371 374 2.520741 CCGTGGTGTTTGGGCCTT 60.521 61.111 4.53 0.00 0.00 4.35
372 375 2.561037 CCGTGGTGTTTGGGCCTTC 61.561 63.158 4.53 0.00 0.00 3.46
373 376 2.561037 CGTGGTGTTTGGGCCTTCC 61.561 63.158 4.53 0.56 0.00 3.46
374 377 1.152546 GTGGTGTTTGGGCCTTCCT 60.153 57.895 4.53 0.00 36.20 3.36
375 378 1.152567 TGGTGTTTGGGCCTTCCTG 60.153 57.895 4.53 0.00 36.20 3.86
376 379 2.574018 GGTGTTTGGGCCTTCCTGC 61.574 63.158 4.53 0.00 36.20 4.85
377 380 1.531602 GTGTTTGGGCCTTCCTGCT 60.532 57.895 4.53 0.00 36.20 4.24
378 381 1.115326 GTGTTTGGGCCTTCCTGCTT 61.115 55.000 4.53 0.00 36.20 3.91
379 382 1.114722 TGTTTGGGCCTTCCTGCTTG 61.115 55.000 4.53 0.00 36.20 4.01
381 384 0.480690 TTTGGGCCTTCCTGCTTGTA 59.519 50.000 4.53 0.00 36.20 2.41
382 385 0.251165 TTGGGCCTTCCTGCTTGTAC 60.251 55.000 4.53 0.00 36.20 2.90
383 386 1.378762 GGGCCTTCCTGCTTGTACA 59.621 57.895 0.84 0.00 0.00 2.90
384 387 0.251165 GGGCCTTCCTGCTTGTACAA 60.251 55.000 8.28 8.28 0.00 2.41
387 390 1.537202 GCCTTCCTGCTTGTACAACAG 59.463 52.381 21.51 21.51 0.00 3.16
388 391 2.851195 CCTTCCTGCTTGTACAACAGT 58.149 47.619 24.11 0.00 0.00 3.55
389 392 2.549754 CCTTCCTGCTTGTACAACAGTG 59.450 50.000 24.11 18.71 0.00 3.66
390 393 1.593196 TCCTGCTTGTACAACAGTGC 58.407 50.000 24.11 18.29 32.65 4.40
393 396 0.655208 TGCTTGTACAACAGTGCGTG 59.345 50.000 3.59 0.00 33.99 5.34
394 397 0.657368 GCTTGTACAACAGTGCGTGC 60.657 55.000 3.59 0.07 0.00 5.34
396 399 0.375454 TTGTACAACAGTGCGTGCAC 59.625 50.000 16.91 16.91 46.50 4.57
408 411 3.479269 GTGCACGTGCGAGCTACC 61.479 66.667 33.22 12.35 45.83 3.18
409 412 3.680786 TGCACGTGCGAGCTACCT 61.681 61.111 33.22 0.00 45.83 3.08
411 414 1.586564 GCACGTGCGAGCTACCTAG 60.587 63.158 26.77 0.00 0.00 3.02
421 424 1.447314 GCTACCTAGCGTTGGCGTT 60.447 57.895 0.00 0.00 46.35 4.84
422 425 1.017701 GCTACCTAGCGTTGGCGTTT 61.018 55.000 0.00 0.00 46.35 3.60
423 426 0.997196 CTACCTAGCGTTGGCGTTTC 59.003 55.000 0.00 0.00 46.35 2.78
424 427 0.390209 TACCTAGCGTTGGCGTTTCC 60.390 55.000 0.00 0.00 46.35 3.13
425 428 2.396157 CCTAGCGTTGGCGTTTCCC 61.396 63.158 0.00 0.00 46.35 3.97
426 429 1.375523 CTAGCGTTGGCGTTTCCCT 60.376 57.895 0.00 0.00 46.35 4.20
427 430 1.359459 CTAGCGTTGGCGTTTCCCTC 61.359 60.000 0.00 0.00 46.35 4.30
428 431 2.102109 TAGCGTTGGCGTTTCCCTCA 62.102 55.000 0.00 0.00 46.35 3.86
429 432 2.332654 GCGTTGGCGTTTCCCTCAT 61.333 57.895 0.00 0.00 40.81 2.90
431 434 0.953471 CGTTGGCGTTTCCCTCATCA 60.953 55.000 0.00 0.00 0.00 3.07
432 435 0.804989 GTTGGCGTTTCCCTCATCAG 59.195 55.000 0.00 0.00 0.00 2.90
454 887 1.373748 TAGCGTTGGCGAGTTGGAC 60.374 57.895 0.00 0.00 46.35 4.02
480 914 4.222145 TCATCCAATACCTTATACTCCGGC 59.778 45.833 0.00 0.00 0.00 6.13
487 921 2.498885 ACCTTATACTCCGGCGAACTTT 59.501 45.455 9.30 0.00 0.00 2.66
497 931 2.018324 GCGAACTTTTGCAGCCAGC 61.018 57.895 0.00 0.00 45.96 4.85
570 1007 2.677003 CCAAACCACAGCGGCTACG 61.677 63.158 0.26 0.00 44.63 3.51
633 1070 3.565902 TCATGTGCTCGTGTCCTATCTAG 59.434 47.826 7.79 0.00 32.85 2.43
640 1077 4.658063 CTCGTGTCCTATCTAGGGATCTT 58.342 47.826 3.47 0.00 43.79 2.40
645 1082 4.420552 TGTCCTATCTAGGGATCTTGGAGT 59.579 45.833 3.47 0.00 43.79 3.85
656 1102 6.875469 AGGGATCTTGGAGTTGGTATAGATA 58.125 40.000 0.00 0.00 0.00 1.98
657 1103 7.313731 AGGGATCTTGGAGTTGGTATAGATAA 58.686 38.462 0.00 0.00 0.00 1.75
664 1110 6.449956 TGGAGTTGGTATAGATAAGTTCCCT 58.550 40.000 0.00 0.00 0.00 4.20
673 1119 4.917906 AGATAAGTTCCCTGTCAAAGCT 57.082 40.909 0.00 0.00 0.00 3.74
676 1122 2.736670 AGTTCCCTGTCAAAGCTGTT 57.263 45.000 0.00 0.00 0.00 3.16
678 1124 1.264288 GTTCCCTGTCAAAGCTGTTCG 59.736 52.381 0.00 0.00 0.00 3.95
681 1127 1.581934 CCTGTCAAAGCTGTTCGTCA 58.418 50.000 0.00 0.00 0.00 4.35
688 1134 4.988065 GCTGTTCGTCACTGCCTA 57.012 55.556 7.73 0.00 43.00 3.93
693 1139 3.676324 GCTGTTCGTCACTGCCTATAAGT 60.676 47.826 7.73 0.00 43.00 2.24
697 1143 3.093814 TCGTCACTGCCTATAAGTTCCA 58.906 45.455 0.00 0.00 0.00 3.53
734 1180 6.445357 TCTCATGTAACGATTGCAGTAGTA 57.555 37.500 0.00 0.00 0.00 1.82
774 1224 0.179161 CTGCGGTTCTCGATCGTCTT 60.179 55.000 15.94 0.00 42.43 3.01
822 1277 4.537135 TTTTTCAGCGGAGATACTGTCT 57.463 40.909 0.00 0.00 40.81 3.41
823 1278 4.537135 TTTTCAGCGGAGATACTGTCTT 57.463 40.909 0.00 0.00 37.29 3.01
824 1279 3.510388 TTCAGCGGAGATACTGTCTTG 57.490 47.619 0.00 0.00 37.29 3.02
826 1281 3.291584 TCAGCGGAGATACTGTCTTGAT 58.708 45.455 0.00 0.00 37.29 2.57
828 1283 4.887655 TCAGCGGAGATACTGTCTTGATTA 59.112 41.667 0.00 0.00 37.29 1.75
829 1284 5.536538 TCAGCGGAGATACTGTCTTGATTAT 59.463 40.000 0.00 0.00 37.29 1.28
830 1285 5.861251 CAGCGGAGATACTGTCTTGATTATC 59.139 44.000 0.00 0.00 37.29 1.75
832 1287 6.266558 AGCGGAGATACTGTCTTGATTATCTT 59.733 38.462 0.00 0.00 37.29 2.40
834 1289 8.082852 GCGGAGATACTGTCTTGATTATCTTTA 58.917 37.037 0.00 0.00 37.29 1.85
867 1324 8.654230 CATAGTGTGCTAATACTGTCTTGATT 57.346 34.615 0.00 0.00 0.00 2.57
869 1326 9.973450 ATAGTGTGCTAATACTGTCTTGATTAG 57.027 33.333 4.44 4.44 36.60 1.73
920 1377 8.860128 CGCACATATTCGTCAATATACTAATGT 58.140 33.333 0.00 0.00 33.99 2.71
929 1386 9.908152 TCGTCAATATACTAATGTCGAATGATT 57.092 29.630 0.00 0.00 33.15 2.57
1131 1591 3.763897 CGGAACTTGAGAAAAATCCCCAT 59.236 43.478 0.00 0.00 0.00 4.00
1204 1664 0.969894 ACTCCTGTGGAAGTTCGAGG 59.030 55.000 8.86 8.23 0.00 4.63
1205 1665 0.247736 CTCCTGTGGAAGTTCGAGGG 59.752 60.000 12.09 7.22 0.00 4.30
1284 1744 4.095483 GTGATGATGACTGAATCCACAACC 59.905 45.833 0.00 0.00 0.00 3.77
1437 1980 5.620206 TCAGTTTATGTCACATTCTGGTGT 58.380 37.500 0.00 0.00 39.76 4.16
1523 2066 3.805066 TGTGAAATCTGGGTCCAATGA 57.195 42.857 0.00 0.00 0.00 2.57
1536 2079 3.446873 GGTCCAATGACATAATTGTGCCA 59.553 43.478 1.57 0.00 43.65 4.92
1589 2140 5.483937 TCTCTAAGAGAGGCTCTATCTCGAT 59.516 44.000 18.75 0.80 46.38 3.59
1666 2220 0.250901 ACTCAAGGTGAATGCCGCTT 60.251 50.000 0.00 0.00 0.00 4.68
1668 2222 2.083774 CTCAAGGTGAATGCCGCTTTA 58.916 47.619 0.00 0.00 0.00 1.85
1684 2238 5.461737 GCCGCTTTATTTTGCATTGCTTATA 59.538 36.000 10.49 2.54 0.00 0.98
1685 2239 6.146021 GCCGCTTTATTTTGCATTGCTTATAT 59.854 34.615 10.49 2.09 0.00 0.86
1791 2345 8.713271 CAAGTTAGAGACTTATTGTTTGAGGAC 58.287 37.037 0.00 0.00 46.75 3.85
1807 2361 2.496470 GAGGACGTACCAGATGTTTCCT 59.504 50.000 0.00 0.00 42.04 3.36
1808 2362 2.233922 AGGACGTACCAGATGTTTCCTG 59.766 50.000 0.00 0.00 42.04 3.86
1875 2429 2.485814 GGTCTGAGGTCAAAGTGAATGC 59.514 50.000 0.00 0.00 0.00 3.56
2026 2588 5.451242 GGGATTCTGTTTTGTACTTGCACAA 60.451 40.000 0.00 0.00 36.65 3.33
2027 2589 5.687285 GGATTCTGTTTTGTACTTGCACAAG 59.313 40.000 8.82 8.82 39.46 3.16
2029 2591 3.115554 CTGTTTTGTACTTGCACAAGCC 58.884 45.455 10.26 2.46 41.99 4.35
2044 2606 4.579869 CACAAGCCTGTCTTACCATACTT 58.420 43.478 0.00 0.00 31.64 2.24
2104 2666 2.080286 TTGGTAGCTCTTCTTCACGC 57.920 50.000 0.00 0.00 0.00 5.34
2281 4395 5.422214 ACAGTAATGGAAGGTTAGTCTGG 57.578 43.478 0.00 0.00 0.00 3.86
2313 4427 4.409570 GTGCAGCTTGAGTTGTATCAATG 58.590 43.478 0.00 0.00 38.47 2.82
2316 4430 5.704978 TGCAGCTTGAGTTGTATCAATGTTA 59.295 36.000 0.00 0.00 38.47 2.41
2414 4834 4.689612 AGGTTGTGTGTCTGATAAGTGT 57.310 40.909 0.00 0.00 0.00 3.55
2451 4871 3.262915 GCCTGGAGATGCAGTATTATCCT 59.737 47.826 0.00 0.00 0.00 3.24
2460 4880 3.258372 TGCAGTATTATCCTCGCTAAGGG 59.742 47.826 2.49 0.00 46.23 3.95
2461 4881 3.851098 CAGTATTATCCTCGCTAAGGGC 58.149 50.000 2.49 0.00 46.23 5.19
2462 4882 3.511934 CAGTATTATCCTCGCTAAGGGCT 59.488 47.826 2.49 0.00 46.23 5.19
2463 4883 3.764972 AGTATTATCCTCGCTAAGGGCTC 59.235 47.826 2.49 0.00 46.23 4.70
2465 4885 2.310779 TATCCTCGCTAAGGGCTCAT 57.689 50.000 2.49 0.00 46.23 2.90
2467 4887 0.753262 TCCTCGCTAAGGGCTCATTC 59.247 55.000 2.49 0.00 46.23 2.67
2468 4888 0.598680 CCTCGCTAAGGGCTCATTCG 60.599 60.000 0.00 0.00 42.03 3.34
2472 4892 1.751437 GCTAAGGGCTCATTCGGTTT 58.249 50.000 0.00 0.00 38.06 3.27
2473 4893 1.401905 GCTAAGGGCTCATTCGGTTTG 59.598 52.381 0.00 0.00 38.06 2.93
2474 4894 2.939640 GCTAAGGGCTCATTCGGTTTGA 60.940 50.000 0.00 0.00 38.06 2.69
2476 4896 1.826385 AGGGCTCATTCGGTTTGAAG 58.174 50.000 0.00 0.00 40.65 3.02
2477 4897 0.811281 GGGCTCATTCGGTTTGAAGG 59.189 55.000 0.00 0.00 40.65 3.46
2478 4898 1.613255 GGGCTCATTCGGTTTGAAGGA 60.613 52.381 0.00 0.00 44.52 3.36
2479 4899 2.159382 GGCTCATTCGGTTTGAAGGAA 58.841 47.619 0.00 0.00 45.83 3.36
2481 4901 3.565516 GCTCATTCGGTTTGAAGGAAAC 58.434 45.455 0.00 0.00 45.83 2.78
2491 4911 5.091910 GTTTGAAGGAAACCAGAACGTAG 57.908 43.478 0.00 0.00 38.45 3.51
2492 4912 3.396260 TGAAGGAAACCAGAACGTAGG 57.604 47.619 0.00 0.00 0.00 3.18
2493 4913 2.967201 TGAAGGAAACCAGAACGTAGGA 59.033 45.455 8.42 0.00 0.00 2.94
2494 4914 3.388676 TGAAGGAAACCAGAACGTAGGAA 59.611 43.478 8.42 0.00 0.00 3.36
2495 4915 4.041198 TGAAGGAAACCAGAACGTAGGAAT 59.959 41.667 8.42 0.00 0.00 3.01
2496 4916 4.635699 AGGAAACCAGAACGTAGGAATT 57.364 40.909 8.42 3.67 0.00 2.17
2497 4917 5.750352 AGGAAACCAGAACGTAGGAATTA 57.250 39.130 8.42 0.00 0.00 1.40
2498 4918 5.731591 AGGAAACCAGAACGTAGGAATTAG 58.268 41.667 8.42 0.00 0.00 1.73
2499 4919 4.874396 GGAAACCAGAACGTAGGAATTAGG 59.126 45.833 8.42 0.00 0.00 2.69
2500 4920 5.337813 GGAAACCAGAACGTAGGAATTAGGA 60.338 44.000 8.42 0.00 0.00 2.94
2501 4921 5.340439 AACCAGAACGTAGGAATTAGGAG 57.660 43.478 8.42 0.00 0.00 3.69
2502 4922 4.351127 ACCAGAACGTAGGAATTAGGAGT 58.649 43.478 8.42 0.00 0.00 3.85
2503 4923 5.513233 ACCAGAACGTAGGAATTAGGAGTA 58.487 41.667 8.42 0.00 0.00 2.59
2504 4924 5.593502 ACCAGAACGTAGGAATTAGGAGTAG 59.406 44.000 8.42 0.00 0.00 2.57
2505 4925 5.593502 CCAGAACGTAGGAATTAGGAGTAGT 59.406 44.000 0.00 0.00 0.00 2.73
2506 4926 6.769822 CCAGAACGTAGGAATTAGGAGTAGTA 59.230 42.308 0.00 0.00 0.00 1.82
2507 4927 7.447853 CCAGAACGTAGGAATTAGGAGTAGTAT 59.552 40.741 0.00 0.00 0.00 2.12
2508 4928 9.499479 CAGAACGTAGGAATTAGGAGTAGTATA 57.501 37.037 0.00 0.00 0.00 1.47
2509 4929 9.723601 AGAACGTAGGAATTAGGAGTAGTATAG 57.276 37.037 0.00 0.00 0.00 1.31
2510 4930 8.860780 AACGTAGGAATTAGGAGTAGTATAGG 57.139 38.462 0.00 0.00 0.00 2.57
2511 4931 8.212259 ACGTAGGAATTAGGAGTAGTATAGGA 57.788 38.462 0.00 0.00 0.00 2.94
2512 4932 8.664079 ACGTAGGAATTAGGAGTAGTATAGGAA 58.336 37.037 0.00 0.00 0.00 3.36
2513 4933 9.683870 CGTAGGAATTAGGAGTAGTATAGGAAT 57.316 37.037 0.00 0.00 0.00 3.01
2529 4949 9.386122 AGTATAGGAATTTGATAGGATGACACT 57.614 33.333 0.00 0.00 0.00 3.55
2531 4951 8.915057 ATAGGAATTTGATAGGATGACACTTG 57.085 34.615 0.00 0.00 0.00 3.16
2532 4952 5.591877 AGGAATTTGATAGGATGACACTTGC 59.408 40.000 0.00 0.00 0.00 4.01
2533 4953 5.221126 GGAATTTGATAGGATGACACTTGCC 60.221 44.000 0.00 0.00 0.00 4.52
2534 4954 3.998913 TTGATAGGATGACACTTGCCA 57.001 42.857 0.00 0.00 0.00 4.92
2535 4955 4.508551 TTGATAGGATGACACTTGCCAT 57.491 40.909 0.00 0.00 0.00 4.40
2536 4956 4.077300 TGATAGGATGACACTTGCCATC 57.923 45.455 0.00 0.00 38.66 3.51
2542 4962 4.142609 GATGACACTTGCCATCCTAAGA 57.857 45.455 0.00 0.00 34.60 2.10
2543 4963 4.517285 GATGACACTTGCCATCCTAAGAA 58.483 43.478 0.00 0.00 34.60 2.52
2544 4964 4.365514 TGACACTTGCCATCCTAAGAAA 57.634 40.909 0.00 0.00 0.00 2.52
2545 4965 4.922206 TGACACTTGCCATCCTAAGAAAT 58.078 39.130 0.00 0.00 0.00 2.17
2546 4966 5.324409 TGACACTTGCCATCCTAAGAAATT 58.676 37.500 0.00 0.00 0.00 1.82
2547 4967 5.183713 TGACACTTGCCATCCTAAGAAATTG 59.816 40.000 0.00 0.00 0.00 2.32
2548 4968 5.324409 ACACTTGCCATCCTAAGAAATTGA 58.676 37.500 0.00 0.00 0.00 2.57
2549 4969 5.183904 ACACTTGCCATCCTAAGAAATTGAC 59.816 40.000 0.00 0.00 0.00 3.18
2550 4970 5.416952 CACTTGCCATCCTAAGAAATTGACT 59.583 40.000 0.00 0.00 0.00 3.41
2551 4971 6.012745 ACTTGCCATCCTAAGAAATTGACTT 58.987 36.000 0.00 4.11 0.00 3.01
2552 4972 5.902613 TGCCATCCTAAGAAATTGACTTG 57.097 39.130 7.97 0.88 0.00 3.16
2553 4973 4.158394 TGCCATCCTAAGAAATTGACTTGC 59.842 41.667 7.97 3.69 0.00 4.01
2554 4974 4.731773 GCCATCCTAAGAAATTGACTTGCG 60.732 45.833 7.97 0.00 0.00 4.85
2555 4975 4.396166 CCATCCTAAGAAATTGACTTGCGT 59.604 41.667 7.97 0.00 0.00 5.24
2556 4976 5.447818 CCATCCTAAGAAATTGACTTGCGTC 60.448 44.000 7.97 0.00 40.64 5.19
2557 4977 3.678072 TCCTAAGAAATTGACTTGCGTCG 59.322 43.478 7.97 0.00 43.21 5.12
2558 4978 3.432252 CCTAAGAAATTGACTTGCGTCGT 59.568 43.478 7.97 0.00 43.21 4.34
2559 4979 3.963383 AAGAAATTGACTTGCGTCGTT 57.037 38.095 0.00 0.00 43.21 3.85
2560 4980 3.521524 AGAAATTGACTTGCGTCGTTC 57.478 42.857 0.00 0.00 43.21 3.95
2561 4981 2.223377 AGAAATTGACTTGCGTCGTTCC 59.777 45.455 0.00 0.00 43.21 3.62
2562 4982 1.878953 AATTGACTTGCGTCGTTCCT 58.121 45.000 0.00 0.00 43.21 3.36
2563 4983 2.736144 ATTGACTTGCGTCGTTCCTA 57.264 45.000 0.00 0.00 43.21 2.94
2564 4984 2.736144 TTGACTTGCGTCGTTCCTAT 57.264 45.000 0.00 0.00 43.21 2.57
2565 4985 3.853831 TTGACTTGCGTCGTTCCTATA 57.146 42.857 0.00 0.00 43.21 1.31
2566 4986 4.380841 TTGACTTGCGTCGTTCCTATAT 57.619 40.909 0.00 0.00 43.21 0.86
2567 4987 3.702330 TGACTTGCGTCGTTCCTATATG 58.298 45.455 0.00 0.00 43.21 1.78
2568 4988 2.470821 ACTTGCGTCGTTCCTATATGC 58.529 47.619 0.00 0.00 0.00 3.14
2569 4989 2.159156 ACTTGCGTCGTTCCTATATGCA 60.159 45.455 0.00 0.00 33.50 3.96
2570 4990 2.588027 TGCGTCGTTCCTATATGCAA 57.412 45.000 0.00 0.00 32.45 4.08
2571 4991 2.894902 TGCGTCGTTCCTATATGCAAA 58.105 42.857 0.00 0.00 32.45 3.68
2572 4992 3.263261 TGCGTCGTTCCTATATGCAAAA 58.737 40.909 0.00 0.00 32.45 2.44
2573 4993 3.874543 TGCGTCGTTCCTATATGCAAAAT 59.125 39.130 0.00 0.00 32.45 1.82
2574 4994 4.211389 GCGTCGTTCCTATATGCAAAATG 58.789 43.478 0.00 0.00 0.00 2.32
2575 4995 4.025229 GCGTCGTTCCTATATGCAAAATGA 60.025 41.667 0.00 0.00 0.00 2.57
2576 4996 5.670097 CGTCGTTCCTATATGCAAAATGAG 58.330 41.667 0.00 0.00 0.00 2.90
2577 4997 5.444122 GTCGTTCCTATATGCAAAATGAGC 58.556 41.667 0.00 0.00 0.00 4.26
2578 4998 5.237344 GTCGTTCCTATATGCAAAATGAGCT 59.763 40.000 0.00 0.00 0.00 4.09
2579 4999 5.822519 TCGTTCCTATATGCAAAATGAGCTT 59.177 36.000 0.00 0.00 0.00 3.74
2580 5000 6.318648 TCGTTCCTATATGCAAAATGAGCTTT 59.681 34.615 0.00 0.00 0.00 3.51
2581 5001 6.415867 CGTTCCTATATGCAAAATGAGCTTTG 59.584 38.462 0.00 0.00 38.97 2.77
2582 5002 7.483307 GTTCCTATATGCAAAATGAGCTTTGA 58.517 34.615 0.00 0.00 38.35 2.69
2583 5003 7.268199 TCCTATATGCAAAATGAGCTTTGAG 57.732 36.000 0.00 0.00 38.35 3.02
2584 5004 6.830324 TCCTATATGCAAAATGAGCTTTGAGT 59.170 34.615 0.00 0.00 38.35 3.41
2585 5005 6.916387 CCTATATGCAAAATGAGCTTTGAGTG 59.084 38.462 0.00 0.00 38.35 3.51
2586 5006 3.374220 TGCAAAATGAGCTTTGAGTGG 57.626 42.857 0.00 0.00 38.35 4.00
2587 5007 2.957680 TGCAAAATGAGCTTTGAGTGGA 59.042 40.909 0.00 0.00 38.35 4.02
2588 5008 3.575256 TGCAAAATGAGCTTTGAGTGGAT 59.425 39.130 0.00 0.00 38.35 3.41
2589 5009 3.924686 GCAAAATGAGCTTTGAGTGGATG 59.075 43.478 0.00 0.00 38.35 3.51
2590 5010 4.560108 GCAAAATGAGCTTTGAGTGGATGT 60.560 41.667 0.00 0.00 38.35 3.06
2591 5011 4.778534 AAATGAGCTTTGAGTGGATGTG 57.221 40.909 0.00 0.00 0.00 3.21
2592 5012 2.936919 TGAGCTTTGAGTGGATGTGT 57.063 45.000 0.00 0.00 0.00 3.72
2593 5013 4.558226 ATGAGCTTTGAGTGGATGTGTA 57.442 40.909 0.00 0.00 0.00 2.90
2594 5014 3.930336 TGAGCTTTGAGTGGATGTGTAG 58.070 45.455 0.00 0.00 0.00 2.74
2595 5015 3.324846 TGAGCTTTGAGTGGATGTGTAGT 59.675 43.478 0.00 0.00 0.00 2.73
2596 5016 4.202357 TGAGCTTTGAGTGGATGTGTAGTT 60.202 41.667 0.00 0.00 0.00 2.24
2597 5017 4.718961 AGCTTTGAGTGGATGTGTAGTTT 58.281 39.130 0.00 0.00 0.00 2.66
2598 5018 5.133221 AGCTTTGAGTGGATGTGTAGTTTT 58.867 37.500 0.00 0.00 0.00 2.43
2599 5019 5.239525 AGCTTTGAGTGGATGTGTAGTTTTC 59.760 40.000 0.00 0.00 0.00 2.29
2600 5020 5.239525 GCTTTGAGTGGATGTGTAGTTTTCT 59.760 40.000 0.00 0.00 0.00 2.52
2601 5021 6.566753 GCTTTGAGTGGATGTGTAGTTTTCTC 60.567 42.308 0.00 0.00 0.00 2.87
2602 5022 4.894784 TGAGTGGATGTGTAGTTTTCTCC 58.105 43.478 0.00 0.00 0.00 3.71
2603 5023 4.346709 TGAGTGGATGTGTAGTTTTCTCCA 59.653 41.667 0.00 0.00 0.00 3.86
2604 5024 5.163248 TGAGTGGATGTGTAGTTTTCTCCAA 60.163 40.000 0.00 0.00 34.75 3.53
2605 5025 5.690865 AGTGGATGTGTAGTTTTCTCCAAA 58.309 37.500 0.00 0.00 34.75 3.28
2606 5026 6.126409 AGTGGATGTGTAGTTTTCTCCAAAA 58.874 36.000 0.00 0.00 34.75 2.44
2607 5027 6.605594 AGTGGATGTGTAGTTTTCTCCAAAAA 59.394 34.615 0.00 0.00 34.75 1.94
2608 5028 6.695713 GTGGATGTGTAGTTTTCTCCAAAAAC 59.304 38.462 5.47 5.47 39.67 2.43
2609 5029 6.378564 TGGATGTGTAGTTTTCTCCAAAAACA 59.621 34.615 13.91 0.75 41.29 2.83
2610 5030 6.695713 GGATGTGTAGTTTTCTCCAAAAACAC 59.304 38.462 13.91 9.61 40.55 3.32
2611 5031 6.576662 TGTGTAGTTTTCTCCAAAAACACA 57.423 33.333 13.91 11.26 44.02 3.72
2612 5032 6.616947 TGTGTAGTTTTCTCCAAAAACACAG 58.383 36.000 13.91 0.00 42.73 3.66
2613 5033 6.033966 GTGTAGTTTTCTCCAAAAACACAGG 58.966 40.000 13.91 0.00 40.21 4.00
2614 5034 5.946972 TGTAGTTTTCTCCAAAAACACAGGA 59.053 36.000 13.91 0.00 41.29 3.86
2615 5035 5.993748 AGTTTTCTCCAAAAACACAGGAA 57.006 34.783 13.91 0.00 41.29 3.36
2616 5036 6.353404 AGTTTTCTCCAAAAACACAGGAAA 57.647 33.333 13.91 0.00 41.29 3.13
2617 5037 6.946340 AGTTTTCTCCAAAAACACAGGAAAT 58.054 32.000 13.91 0.00 41.29 2.17
2618 5038 8.073467 AGTTTTCTCCAAAAACACAGGAAATA 57.927 30.769 13.91 0.00 41.29 1.40
2619 5039 8.536175 AGTTTTCTCCAAAAACACAGGAAATAA 58.464 29.630 13.91 0.00 41.29 1.40
2620 5040 9.157104 GTTTTCTCCAAAAACACAGGAAATAAA 57.843 29.630 8.17 0.00 39.30 1.40
2621 5041 9.898152 TTTTCTCCAAAAACACAGGAAATAAAT 57.102 25.926 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.410914 CACTTATTACGCATCACCGAAAATTC 59.589 38.462 0.00 0.00 0.00 2.17
6 7 6.255215 CACTTATTACGCATCACCGAAAATT 58.745 36.000 0.00 0.00 0.00 1.82
11 12 2.482316 CCCACTTATTACGCATCACCGA 60.482 50.000 0.00 0.00 0.00 4.69
13 14 3.131396 CTCCCACTTATTACGCATCACC 58.869 50.000 0.00 0.00 0.00 4.02
15 16 3.035363 TCCTCCCACTTATTACGCATCA 58.965 45.455 0.00 0.00 0.00 3.07
22 23 3.703052 GGAACGTCTCCTCCCACTTATTA 59.297 47.826 8.87 0.00 41.61 0.98
24 25 2.108970 GGAACGTCTCCTCCCACTTAT 58.891 52.381 8.87 0.00 41.61 1.73
26 27 2.363297 GGAACGTCTCCTCCCACTT 58.637 57.895 8.87 0.00 41.61 3.16
45 46 0.678684 TAGGCACCTCGTCATCGACA 60.679 55.000 0.00 0.00 41.35 4.35
83 84 6.961360 AGACTGAACCGACATATCATCTTA 57.039 37.500 0.00 0.00 0.00 2.10
95 96 1.612676 TCTCCGAAAGACTGAACCGA 58.387 50.000 0.00 0.00 0.00 4.69
99 100 6.263392 CCTATGAGTATCTCCGAAAGACTGAA 59.737 42.308 0.00 0.00 36.65 3.02
114 115 3.209152 ACACACCCTACCCCTATGAGTAT 59.791 47.826 0.00 0.00 0.00 2.12
116 117 1.365028 ACACACCCTACCCCTATGAGT 59.635 52.381 0.00 0.00 0.00 3.41
140 141 2.202046 CCTATAAATGCGCGCGCG 60.202 61.111 45.73 45.73 45.51 6.86
149 152 5.336213 CGCGTATACACTCACCCCTATAAAT 60.336 44.000 0.00 0.00 0.00 1.40
152 155 3.076621 CGCGTATACACTCACCCCTATA 58.923 50.000 0.00 0.00 0.00 1.31
181 184 2.173382 GTACAACCGCAAGCGCTG 59.827 61.111 12.58 6.58 38.24 5.18
183 186 2.173382 CAGTACAACCGCAAGCGC 59.827 61.111 9.26 0.00 38.24 5.92
207 210 3.181470 CCCACGTTGGTCCAATTCTTTTT 60.181 43.478 7.77 0.00 35.17 1.94
211 214 0.251165 CCCCACGTTGGTCCAATTCT 60.251 55.000 7.77 0.00 35.17 2.40
214 217 0.996583 ATACCCCACGTTGGTCCAAT 59.003 50.000 7.77 0.00 37.31 3.16
217 220 1.456296 GAAATACCCCACGTTGGTCC 58.544 55.000 9.72 0.00 37.31 4.46
218 221 1.003928 AGGAAATACCCCACGTTGGTC 59.996 52.381 9.72 0.00 40.05 4.02
219 222 1.003928 GAGGAAATACCCCACGTTGGT 59.996 52.381 11.08 11.08 40.05 3.67
220 223 1.746470 GAGGAAATACCCCACGTTGG 58.254 55.000 0.00 0.00 40.05 3.77
221 224 1.338389 ACGAGGAAATACCCCACGTTG 60.338 52.381 0.00 0.00 39.07 4.10
222 225 0.978907 ACGAGGAAATACCCCACGTT 59.021 50.000 0.00 0.00 39.07 3.99
223 226 0.533951 GACGAGGAAATACCCCACGT 59.466 55.000 4.47 4.47 42.33 4.49
224 227 0.822164 AGACGAGGAAATACCCCACG 59.178 55.000 0.00 0.00 40.05 4.94
225 228 3.450096 AGTTAGACGAGGAAATACCCCAC 59.550 47.826 0.00 0.00 40.05 4.61
226 229 3.716431 AGTTAGACGAGGAAATACCCCA 58.284 45.455 0.00 0.00 40.05 4.96
227 230 5.595885 GTTAGTTAGACGAGGAAATACCCC 58.404 45.833 0.00 0.00 40.05 4.95
228 231 5.277047 CGTTAGTTAGACGAGGAAATACCC 58.723 45.833 0.00 0.00 42.82 3.69
229 232 4.737279 GCGTTAGTTAGACGAGGAAATACC 59.263 45.833 0.33 0.00 42.82 2.73
230 233 4.737279 GGCGTTAGTTAGACGAGGAAATAC 59.263 45.833 0.33 0.00 42.82 1.89
231 234 4.641989 AGGCGTTAGTTAGACGAGGAAATA 59.358 41.667 0.33 0.00 42.82 1.40
232 235 3.446516 AGGCGTTAGTTAGACGAGGAAAT 59.553 43.478 0.33 0.00 42.82 2.17
233 236 2.821969 AGGCGTTAGTTAGACGAGGAAA 59.178 45.455 0.33 0.00 42.82 3.13
234 237 2.163010 CAGGCGTTAGTTAGACGAGGAA 59.837 50.000 0.33 0.00 42.82 3.36
235 238 1.741706 CAGGCGTTAGTTAGACGAGGA 59.258 52.381 0.33 0.00 42.82 3.71
236 239 1.798079 GCAGGCGTTAGTTAGACGAGG 60.798 57.143 0.33 0.00 42.82 4.63
237 240 1.546834 GCAGGCGTTAGTTAGACGAG 58.453 55.000 0.33 0.00 42.82 4.18
238 241 0.179181 CGCAGGCGTTAGTTAGACGA 60.179 55.000 5.34 0.00 42.82 4.20
239 242 2.275703 CGCAGGCGTTAGTTAGACG 58.724 57.895 5.34 0.00 43.04 4.18
251 254 1.284982 CCTATATGACGCACGCAGGC 61.285 60.000 0.00 0.00 0.00 4.85
252 255 0.313987 TCCTATATGACGCACGCAGG 59.686 55.000 0.00 0.00 0.00 4.85
253 256 1.667177 CCTCCTATATGACGCACGCAG 60.667 57.143 0.00 0.00 0.00 5.18
254 257 0.313987 CCTCCTATATGACGCACGCA 59.686 55.000 0.00 0.00 0.00 5.24
255 258 0.596577 TCCTCCTATATGACGCACGC 59.403 55.000 0.00 0.00 0.00 5.34
256 259 1.880675 AGTCCTCCTATATGACGCACG 59.119 52.381 0.00 0.00 34.24 5.34
257 260 2.885266 TGAGTCCTCCTATATGACGCAC 59.115 50.000 0.00 0.00 34.58 5.34
258 261 3.149981 CTGAGTCCTCCTATATGACGCA 58.850 50.000 0.00 0.00 36.65 5.24
259 262 3.189702 GTCTGAGTCCTCCTATATGACGC 59.810 52.174 0.00 0.00 34.24 5.19
260 263 4.647611 AGTCTGAGTCCTCCTATATGACG 58.352 47.826 0.00 0.00 34.24 4.35
261 264 6.015772 GGAAAGTCTGAGTCCTCCTATATGAC 60.016 46.154 6.41 0.00 0.00 3.06
262 265 6.071984 GGAAAGTCTGAGTCCTCCTATATGA 58.928 44.000 6.41 0.00 0.00 2.15
263 266 6.074648 AGGAAAGTCTGAGTCCTCCTATATG 58.925 44.000 12.24 0.00 37.15 1.78
266 269 4.618378 AGGAAAGTCTGAGTCCTCCTAT 57.382 45.455 12.24 0.00 37.15 2.57
270 273 4.282496 TCCATAGGAAAGTCTGAGTCCTC 58.718 47.826 7.55 0.00 41.01 3.71
275 278 5.469421 GCATCATTCCATAGGAAAGTCTGAG 59.531 44.000 2.16 0.00 45.41 3.35
277 280 5.008415 GTGCATCATTCCATAGGAAAGTCTG 59.992 44.000 2.16 3.11 45.41 3.51
281 284 3.304257 GCGTGCATCATTCCATAGGAAAG 60.304 47.826 2.16 0.00 45.41 2.62
283 286 2.158769 AGCGTGCATCATTCCATAGGAA 60.159 45.455 0.30 0.30 46.39 3.36
287 290 1.596603 CCAGCGTGCATCATTCCATA 58.403 50.000 0.00 0.00 0.00 2.74
288 291 1.105167 CCCAGCGTGCATCATTCCAT 61.105 55.000 0.00 0.00 0.00 3.41
289 292 1.750018 CCCAGCGTGCATCATTCCA 60.750 57.895 0.00 0.00 0.00 3.53
290 293 1.031571 TTCCCAGCGTGCATCATTCC 61.032 55.000 0.00 0.00 0.00 3.01
291 294 0.810648 TTTCCCAGCGTGCATCATTC 59.189 50.000 0.00 0.00 0.00 2.67
294 297 0.250684 TTCTTTCCCAGCGTGCATCA 60.251 50.000 0.00 0.00 0.00 3.07
296 299 1.270550 CTTTTCTTTCCCAGCGTGCAT 59.729 47.619 0.00 0.00 0.00 3.96
299 302 4.003648 AGTATCTTTTCTTTCCCAGCGTG 58.996 43.478 0.00 0.00 0.00 5.34
301 304 6.106673 TCTTAGTATCTTTTCTTTCCCAGCG 58.893 40.000 0.00 0.00 0.00 5.18
302 305 7.923414 TTCTTAGTATCTTTTCTTTCCCAGC 57.077 36.000 0.00 0.00 0.00 4.85
303 306 8.731605 GGTTTCTTAGTATCTTTTCTTTCCCAG 58.268 37.037 0.00 0.00 0.00 4.45
304 307 8.221944 TGGTTTCTTAGTATCTTTTCTTTCCCA 58.778 33.333 0.00 0.00 0.00 4.37
305 308 8.512956 GTGGTTTCTTAGTATCTTTTCTTTCCC 58.487 37.037 0.00 0.00 0.00 3.97
306 309 8.228464 CGTGGTTTCTTAGTATCTTTTCTTTCC 58.772 37.037 0.00 0.00 0.00 3.13
308 311 8.897872 TCGTGGTTTCTTAGTATCTTTTCTTT 57.102 30.769 0.00 0.00 0.00 2.52
310 313 9.152595 GAATCGTGGTTTCTTAGTATCTTTTCT 57.847 33.333 0.00 0.00 0.00 2.52
311 314 8.388853 GGAATCGTGGTTTCTTAGTATCTTTTC 58.611 37.037 0.00 0.00 0.00 2.29
312 315 8.101419 AGGAATCGTGGTTTCTTAGTATCTTTT 58.899 33.333 0.00 0.00 0.00 2.27
313 316 7.621796 AGGAATCGTGGTTTCTTAGTATCTTT 58.378 34.615 0.00 0.00 0.00 2.52
314 317 7.184067 AGGAATCGTGGTTTCTTAGTATCTT 57.816 36.000 0.00 0.00 0.00 2.40
315 318 6.793505 AGGAATCGTGGTTTCTTAGTATCT 57.206 37.500 0.00 0.00 0.00 1.98
316 319 7.845066 AAAGGAATCGTGGTTTCTTAGTATC 57.155 36.000 0.00 0.00 0.00 2.24
317 320 9.379791 CTTAAAGGAATCGTGGTTTCTTAGTAT 57.620 33.333 0.00 0.00 0.00 2.12
318 321 7.820872 CCTTAAAGGAATCGTGGTTTCTTAGTA 59.179 37.037 0.00 0.00 37.67 1.82
319 322 6.653740 CCTTAAAGGAATCGTGGTTTCTTAGT 59.346 38.462 0.00 0.00 37.67 2.24
320 323 6.403309 GCCTTAAAGGAATCGTGGTTTCTTAG 60.403 42.308 0.00 0.00 37.67 2.18
321 324 5.413523 GCCTTAAAGGAATCGTGGTTTCTTA 59.586 40.000 0.00 0.00 37.67 2.10
322 325 4.217767 GCCTTAAAGGAATCGTGGTTTCTT 59.782 41.667 0.00 0.00 37.67 2.52
323 326 3.756963 GCCTTAAAGGAATCGTGGTTTCT 59.243 43.478 0.00 0.00 37.67 2.52
324 327 3.425758 CGCCTTAAAGGAATCGTGGTTTC 60.426 47.826 0.00 0.00 37.67 2.78
326 329 2.081462 CGCCTTAAAGGAATCGTGGTT 58.919 47.619 0.00 0.00 37.67 3.67
328 331 2.018542 TCGCCTTAAAGGAATCGTGG 57.981 50.000 0.00 0.00 37.67 4.94
330 333 1.997606 CGTTCGCCTTAAAGGAATCGT 59.002 47.619 0.00 0.00 37.67 3.73
335 338 1.376295 GCCCGTTCGCCTTAAAGGA 60.376 57.895 0.00 0.00 37.67 3.36
336 339 2.404186 GGCCCGTTCGCCTTAAAGG 61.404 63.158 0.00 0.00 46.10 3.11
337 340 3.184206 GGCCCGTTCGCCTTAAAG 58.816 61.111 0.00 0.00 46.10 1.85
354 357 2.520741 AAGGCCCAAACACCACGG 60.521 61.111 0.00 0.00 0.00 4.94
355 358 2.561037 GGAAGGCCCAAACACCACG 61.561 63.158 0.00 0.00 34.14 4.94
356 359 1.152546 AGGAAGGCCCAAACACCAC 60.153 57.895 0.00 0.00 37.41 4.16
357 360 1.152567 CAGGAAGGCCCAAACACCA 60.153 57.895 0.00 0.00 37.41 4.17
358 361 2.574018 GCAGGAAGGCCCAAACACC 61.574 63.158 0.00 0.00 37.41 4.16
359 362 1.115326 AAGCAGGAAGGCCCAAACAC 61.115 55.000 0.00 0.00 37.41 3.32
361 364 1.115326 ACAAGCAGGAAGGCCCAAAC 61.115 55.000 0.00 0.00 37.41 2.93
363 366 0.251165 GTACAAGCAGGAAGGCCCAA 60.251 55.000 0.00 0.00 37.41 4.12
365 368 0.251165 TTGTACAAGCAGGAAGGCCC 60.251 55.000 3.59 0.00 33.31 5.80
366 369 0.881796 GTTGTACAAGCAGGAAGGCC 59.118 55.000 8.98 0.00 0.00 5.19
367 370 1.537202 CTGTTGTACAAGCAGGAAGGC 59.463 52.381 21.06 5.56 0.00 4.35
368 371 2.549754 CACTGTTGTACAAGCAGGAAGG 59.450 50.000 27.09 16.75 34.79 3.46
371 374 1.593196 GCACTGTTGTACAAGCAGGA 58.407 50.000 27.09 1.76 34.79 3.86
372 375 0.235665 CGCACTGTTGTACAAGCAGG 59.764 55.000 27.09 20.61 34.79 4.85
373 376 0.937304 ACGCACTGTTGTACAAGCAG 59.063 50.000 24.39 24.39 31.22 4.24
374 377 0.655208 CACGCACTGTTGTACAAGCA 59.345 50.000 8.98 9.31 31.22 3.91
375 378 0.657368 GCACGCACTGTTGTACAAGC 60.657 55.000 8.98 8.00 0.00 4.01
376 379 0.655208 TGCACGCACTGTTGTACAAG 59.345 50.000 8.98 0.05 0.00 3.16
377 380 0.375454 GTGCACGCACTGTTGTACAA 59.625 50.000 14.81 3.59 43.12 2.41
378 381 1.757346 CGTGCACGCACTGTTGTACA 61.757 55.000 28.16 0.00 44.16 2.90
379 382 1.083657 CGTGCACGCACTGTTGTAC 60.084 57.895 28.16 0.00 44.16 2.90
381 384 2.817834 ACGTGCACGCACTGTTGT 60.818 55.556 37.35 14.16 44.16 3.32
382 385 2.351097 CACGTGCACGCACTGTTG 60.351 61.111 37.35 23.25 44.16 3.33
383 386 4.236416 GCACGTGCACGCACTGTT 62.236 61.111 37.35 15.76 44.16 3.16
390 393 3.827784 GTAGCTCGCACGTGCACG 61.828 66.667 37.03 35.99 46.33 5.34
393 396 1.586564 CTAGGTAGCTCGCACGTGC 60.587 63.158 30.42 30.42 37.78 5.34
394 397 1.586564 GCTAGGTAGCTCGCACGTG 60.587 63.158 12.28 12.28 45.62 4.49
396 399 2.352457 CGCTAGGTAGCTCGCACG 60.352 66.667 17.34 5.52 46.85 5.34
397 400 1.139095 AACGCTAGGTAGCTCGCAC 59.861 57.895 17.34 0.00 46.85 5.34
398 401 1.138883 CAACGCTAGGTAGCTCGCA 59.861 57.895 17.34 0.00 46.85 5.10
399 402 1.589196 CCAACGCTAGGTAGCTCGC 60.589 63.158 8.31 8.31 46.85 5.03
400 403 1.589196 GCCAACGCTAGGTAGCTCG 60.589 63.158 0.00 0.00 46.85 5.03
401 404 1.589196 CGCCAACGCTAGGTAGCTC 60.589 63.158 0.00 0.00 46.85 4.09
402 405 1.885163 AACGCCAACGCTAGGTAGCT 61.885 55.000 7.39 0.00 46.85 3.32
404 407 0.997196 GAAACGCCAACGCTAGGTAG 59.003 55.000 0.00 0.00 45.53 3.18
406 409 1.670083 GGAAACGCCAACGCTAGGT 60.670 57.895 0.00 0.00 45.53 3.08
408 411 1.359459 GAGGGAAACGCCAACGCTAG 61.359 60.000 0.00 0.00 45.53 3.42
409 412 1.375013 GAGGGAAACGCCAACGCTA 60.375 57.895 0.00 0.00 45.53 4.26
411 414 2.253414 GATGAGGGAAACGCCAACGC 62.253 60.000 0.00 0.00 45.53 4.84
413 416 0.804989 CTGATGAGGGAAACGCCAAC 59.195 55.000 0.00 0.00 38.95 3.77
414 417 0.690192 TCTGATGAGGGAAACGCCAA 59.310 50.000 0.00 0.00 38.95 4.52
415 418 0.690192 TTCTGATGAGGGAAACGCCA 59.310 50.000 0.00 0.00 38.95 5.69
416 419 1.339151 ACTTCTGATGAGGGAAACGCC 60.339 52.381 0.00 0.00 0.00 5.68
417 420 2.100605 ACTTCTGATGAGGGAAACGC 57.899 50.000 0.00 0.00 0.00 4.84
418 421 3.190874 GCTACTTCTGATGAGGGAAACG 58.809 50.000 0.00 0.00 0.00 3.60
419 422 3.190874 CGCTACTTCTGATGAGGGAAAC 58.809 50.000 0.00 0.00 0.00 2.78
421 424 2.457598 ACGCTACTTCTGATGAGGGAA 58.542 47.619 0.00 0.00 0.00 3.97
422 425 2.145397 ACGCTACTTCTGATGAGGGA 57.855 50.000 0.00 0.00 0.00 4.20
423 426 2.544685 CAACGCTACTTCTGATGAGGG 58.455 52.381 0.00 2.64 0.00 4.30
424 427 2.544685 CCAACGCTACTTCTGATGAGG 58.455 52.381 0.00 0.00 0.00 3.86
425 428 1.929836 GCCAACGCTACTTCTGATGAG 59.070 52.381 0.00 0.00 0.00 2.90
426 429 1.735700 CGCCAACGCTACTTCTGATGA 60.736 52.381 0.00 0.00 0.00 2.92
427 430 0.647410 CGCCAACGCTACTTCTGATG 59.353 55.000 0.00 0.00 0.00 3.07
428 431 0.530744 TCGCCAACGCTACTTCTGAT 59.469 50.000 0.00 0.00 39.84 2.90
429 432 0.109272 CTCGCCAACGCTACTTCTGA 60.109 55.000 0.00 0.00 39.84 3.27
431 434 0.317479 AACTCGCCAACGCTACTTCT 59.683 50.000 0.00 0.00 39.84 2.85
432 435 0.438830 CAACTCGCCAACGCTACTTC 59.561 55.000 0.00 0.00 39.84 3.01
454 887 6.390721 CGGAGTATAAGGTATTGGATGAGTG 58.609 44.000 0.00 0.00 0.00 3.51
462 895 3.928727 TCGCCGGAGTATAAGGTATTG 57.071 47.619 5.05 0.00 0.00 1.90
470 903 2.273557 GCAAAAGTTCGCCGGAGTATA 58.726 47.619 5.05 0.00 0.00 1.47
471 904 1.084289 GCAAAAGTTCGCCGGAGTAT 58.916 50.000 5.05 0.00 0.00 2.12
480 914 4.233408 GCTGGCTGCAAAAGTTCG 57.767 55.556 11.80 0.00 42.31 3.95
500 934 3.927481 GACTTGGGGAGGTGCTGCC 62.927 68.421 0.00 0.00 41.42 4.85
501 935 2.360475 GACTTGGGGAGGTGCTGC 60.360 66.667 0.00 0.00 0.00 5.25
502 936 1.002868 CTGACTTGGGGAGGTGCTG 60.003 63.158 0.00 0.00 0.00 4.41
503 937 1.152030 TCTGACTTGGGGAGGTGCT 60.152 57.895 0.00 0.00 0.00 4.40
504 938 1.194781 TCTCTGACTTGGGGAGGTGC 61.195 60.000 0.00 0.00 0.00 5.01
561 998 1.167155 AGATCGATGACGTAGCCGCT 61.167 55.000 0.54 0.00 40.69 5.52
570 1007 3.315749 ACTTCTTACCGGAGATCGATGAC 59.684 47.826 9.46 0.00 42.43 3.06
633 1070 7.235812 ACTTATCTATACCAACTCCAAGATCCC 59.764 40.741 0.00 0.00 0.00 3.85
640 1077 6.326583 CAGGGAACTTATCTATACCAACTCCA 59.673 42.308 0.00 0.00 40.21 3.86
645 1082 7.743116 TTGACAGGGAACTTATCTATACCAA 57.257 36.000 0.00 0.00 40.21 3.67
656 1102 2.736670 ACAGCTTTGACAGGGAACTT 57.263 45.000 0.00 0.00 40.21 2.66
657 1103 2.576615 GAACAGCTTTGACAGGGAACT 58.423 47.619 0.00 0.00 46.44 3.01
664 1110 1.933181 CAGTGACGAACAGCTTTGACA 59.067 47.619 0.00 0.00 0.00 3.58
673 1119 4.491676 GAACTTATAGGCAGTGACGAACA 58.508 43.478 0.00 0.00 0.00 3.18
676 1122 3.093814 TGGAACTTATAGGCAGTGACGA 58.906 45.455 0.00 0.00 0.00 4.20
678 1124 3.187700 CGTGGAACTTATAGGCAGTGAC 58.812 50.000 0.00 0.00 31.75 3.67
681 1127 2.185387 ACCGTGGAACTTATAGGCAGT 58.815 47.619 0.00 0.00 31.75 4.40
697 1143 2.300152 ACATGAGATGAGACACAACCGT 59.700 45.455 0.00 0.00 0.00 4.83
734 1180 2.676342 GCTAACAACGGACGAATTCCAT 59.324 45.455 0.00 0.00 46.29 3.41
806 1261 3.724508 ATCAAGACAGTATCTCCGCTG 57.275 47.619 0.00 0.00 36.27 5.18
807 1262 5.772672 AGATAATCAAGACAGTATCTCCGCT 59.227 40.000 0.00 0.00 36.27 5.52
808 1263 6.019779 AGATAATCAAGACAGTATCTCCGC 57.980 41.667 0.00 0.00 36.27 5.54
816 1271 9.717942 GCTATCCATAAAGATAATCAAGACAGT 57.282 33.333 0.00 0.00 0.00 3.55
817 1272 9.716531 TGCTATCCATAAAGATAATCAAGACAG 57.283 33.333 0.00 0.00 0.00 3.51
862 1319 7.903145 TCTTACTGGTACAAAGAGCTAATCAA 58.097 34.615 0.00 0.00 38.70 2.57
869 1326 7.380065 CGAATAGATCTTACTGGTACAAAGAGC 59.620 40.741 0.00 1.27 40.59 4.09
872 1329 6.978659 TGCGAATAGATCTTACTGGTACAAAG 59.021 38.462 0.00 0.00 38.70 2.77
874 1331 6.127563 TGTGCGAATAGATCTTACTGGTACAA 60.128 38.462 0.00 0.00 38.70 2.41
876 1333 5.828747 TGTGCGAATAGATCTTACTGGTAC 58.171 41.667 0.00 0.00 0.00 3.34
985 1445 5.506730 TTTCCCATGTTGTATGTACCTGA 57.493 39.130 0.00 0.00 0.00 3.86
986 1446 5.943416 TCTTTTCCCATGTTGTATGTACCTG 59.057 40.000 0.00 0.00 0.00 4.00
1131 1591 5.338632 TCAAGGAGATACTTAAGTGGACCA 58.661 41.667 18.56 0.00 0.00 4.02
1284 1744 7.552687 TGTTCTATATTAGCCTCAAAACCACTG 59.447 37.037 0.00 0.00 0.00 3.66
1425 1968 6.093495 ACACGGATAATAAACACCAGAATGTG 59.907 38.462 0.00 0.00 42.05 3.21
1429 1972 7.172868 TCTACACGGATAATAAACACCAGAA 57.827 36.000 0.00 0.00 0.00 3.02
1437 1980 7.097192 GCTCATCCATCTACACGGATAATAAA 58.903 38.462 0.00 0.00 40.12 1.40
1536 2079 7.004086 TGTTCCCTTCTTCATCACAACTTATT 58.996 34.615 0.00 0.00 0.00 1.40
1589 2140 5.836024 AAAGAGTAGGACCATTGTACCAA 57.164 39.130 0.00 0.00 0.00 3.67
1694 2248 8.855110 TGTGAACACATAACATAAAAAGGACAT 58.145 29.630 3.39 0.00 36.21 3.06
1777 2331 5.471556 TCTGGTACGTCCTCAAACAATAA 57.528 39.130 0.00 0.00 37.07 1.40
1786 2340 2.496470 AGGAAACATCTGGTACGTCCTC 59.504 50.000 0.00 0.00 32.67 3.71
1791 2345 3.594603 AGACAGGAAACATCTGGTACG 57.405 47.619 0.00 0.00 36.62 3.67
1807 2361 7.719193 TCTCCTTCAATTTTTGTGACATAGACA 59.281 33.333 0.00 0.00 0.00 3.41
1808 2362 8.099364 TCTCCTTCAATTTTTGTGACATAGAC 57.901 34.615 0.00 0.00 0.00 2.59
1875 2429 5.065731 GCCTCCAGTGAACAGAAAATATCAG 59.934 44.000 0.00 0.00 0.00 2.90
1961 2515 3.192466 AGGTAACATCGTCGCATTTACC 58.808 45.455 15.50 15.50 41.35 2.85
2026 2588 5.221541 GCTATGAAGTATGGTAAGACAGGCT 60.222 44.000 0.00 0.00 0.00 4.58
2027 2589 4.991687 GCTATGAAGTATGGTAAGACAGGC 59.008 45.833 0.00 0.00 0.00 4.85
2029 2591 5.694006 GCAGCTATGAAGTATGGTAAGACAG 59.306 44.000 0.00 0.00 0.00 3.51
2044 2606 5.234972 CAGATGTAAACGATTGCAGCTATGA 59.765 40.000 13.32 0.00 44.43 2.15
2281 4395 5.030874 ACTCAAGCTGCACGTTTATTTAC 57.969 39.130 1.02 0.00 0.00 2.01
2414 4834 3.114606 TCCAGGCTGGATGTCTATTTGA 58.885 45.455 32.01 5.54 42.67 2.69
2431 4851 4.742417 CGAGGATAATACTGCATCTCCAG 58.258 47.826 0.00 0.00 38.78 3.86
2459 4879 1.821216 TCCTTCAAACCGAATGAGCC 58.179 50.000 0.00 0.00 31.69 4.70
2460 4880 3.565516 GTTTCCTTCAAACCGAATGAGC 58.434 45.455 0.00 0.00 38.86 4.26
2472 4892 2.967201 TCCTACGTTCTGGTTTCCTTCA 59.033 45.455 0.00 0.00 0.00 3.02
2473 4893 3.672767 TCCTACGTTCTGGTTTCCTTC 57.327 47.619 0.00 0.00 0.00 3.46
2474 4894 4.635699 ATTCCTACGTTCTGGTTTCCTT 57.364 40.909 0.00 0.00 0.00 3.36
2476 4896 4.874396 CCTAATTCCTACGTTCTGGTTTCC 59.126 45.833 0.00 0.00 0.00 3.13
2477 4897 5.727434 TCCTAATTCCTACGTTCTGGTTTC 58.273 41.667 0.00 0.00 0.00 2.78
2478 4898 5.247792 ACTCCTAATTCCTACGTTCTGGTTT 59.752 40.000 0.00 0.00 0.00 3.27
2479 4899 4.776308 ACTCCTAATTCCTACGTTCTGGTT 59.224 41.667 0.00 0.00 0.00 3.67
2481 4901 5.593502 ACTACTCCTAATTCCTACGTTCTGG 59.406 44.000 0.00 0.00 0.00 3.86
2482 4902 6.696441 ACTACTCCTAATTCCTACGTTCTG 57.304 41.667 0.00 0.00 0.00 3.02
2483 4903 9.723601 CTATACTACTCCTAATTCCTACGTTCT 57.276 37.037 0.00 0.00 0.00 3.01
2484 4904 8.945057 CCTATACTACTCCTAATTCCTACGTTC 58.055 40.741 0.00 0.00 0.00 3.95
2485 4905 8.664079 TCCTATACTACTCCTAATTCCTACGTT 58.336 37.037 0.00 0.00 0.00 3.99
2486 4906 8.212259 TCCTATACTACTCCTAATTCCTACGT 57.788 38.462 0.00 0.00 0.00 3.57
2487 4907 9.683870 ATTCCTATACTACTCCTAATTCCTACG 57.316 37.037 0.00 0.00 0.00 3.51
2503 4923 9.386122 AGTGTCATCCTATCAAATTCCTATACT 57.614 33.333 0.00 0.00 0.00 2.12
2506 4926 7.446625 GCAAGTGTCATCCTATCAAATTCCTAT 59.553 37.037 0.00 0.00 0.00 2.57
2507 4927 6.767902 GCAAGTGTCATCCTATCAAATTCCTA 59.232 38.462 0.00 0.00 0.00 2.94
2508 4928 5.591877 GCAAGTGTCATCCTATCAAATTCCT 59.408 40.000 0.00 0.00 0.00 3.36
2509 4929 5.221126 GGCAAGTGTCATCCTATCAAATTCC 60.221 44.000 0.00 0.00 0.00 3.01
2510 4930 5.357878 TGGCAAGTGTCATCCTATCAAATTC 59.642 40.000 0.00 0.00 0.00 2.17
2511 4931 5.263599 TGGCAAGTGTCATCCTATCAAATT 58.736 37.500 0.00 0.00 0.00 1.82
2512 4932 4.858850 TGGCAAGTGTCATCCTATCAAAT 58.141 39.130 0.00 0.00 0.00 2.32
2513 4933 4.299586 TGGCAAGTGTCATCCTATCAAA 57.700 40.909 0.00 0.00 0.00 2.69
2514 4934 3.998913 TGGCAAGTGTCATCCTATCAA 57.001 42.857 0.00 0.00 0.00 2.57
2522 4942 4.574674 TTCTTAGGATGGCAAGTGTCAT 57.425 40.909 0.00 0.00 44.05 3.06
2523 4943 4.365514 TTTCTTAGGATGGCAAGTGTCA 57.634 40.909 0.00 0.00 0.00 3.58
2524 4944 5.415701 TCAATTTCTTAGGATGGCAAGTGTC 59.584 40.000 0.00 0.00 0.00 3.67
2525 4945 5.183904 GTCAATTTCTTAGGATGGCAAGTGT 59.816 40.000 0.00 0.00 0.00 3.55
2526 4946 5.416952 AGTCAATTTCTTAGGATGGCAAGTG 59.583 40.000 0.00 0.00 0.00 3.16
2527 4947 5.574188 AGTCAATTTCTTAGGATGGCAAGT 58.426 37.500 0.00 0.00 0.00 3.16
2528 4948 6.327934 CAAGTCAATTTCTTAGGATGGCAAG 58.672 40.000 0.00 0.00 0.00 4.01
2529 4949 5.336690 GCAAGTCAATTTCTTAGGATGGCAA 60.337 40.000 0.00 0.00 0.00 4.52
2530 4950 4.158394 GCAAGTCAATTTCTTAGGATGGCA 59.842 41.667 0.00 0.00 0.00 4.92
2531 4951 4.676546 GCAAGTCAATTTCTTAGGATGGC 58.323 43.478 0.00 0.00 0.00 4.40
2532 4952 4.913376 CGCAAGTCAATTTCTTAGGATGG 58.087 43.478 0.00 0.00 0.00 3.51
2549 4969 3.308595 TTTGCATATAGGAACGACGCAAG 59.691 43.478 0.00 0.00 38.90 4.01
2550 4970 2.588027 TGCATATAGGAACGACGCAA 57.412 45.000 0.00 0.00 0.00 4.85
2551 4971 2.588027 TTGCATATAGGAACGACGCA 57.412 45.000 0.00 0.00 0.00 5.24
2552 4972 3.936902 TTTTGCATATAGGAACGACGC 57.063 42.857 0.00 0.00 0.00 5.19
2553 4973 5.651172 TCATTTTGCATATAGGAACGACG 57.349 39.130 0.00 0.00 0.00 5.12
2554 4974 5.237344 AGCTCATTTTGCATATAGGAACGAC 59.763 40.000 0.00 0.00 0.00 4.34
2555 4975 5.368145 AGCTCATTTTGCATATAGGAACGA 58.632 37.500 0.00 0.00 0.00 3.85
2556 4976 5.679734 AGCTCATTTTGCATATAGGAACG 57.320 39.130 0.00 0.00 0.00 3.95
2557 4977 7.483307 TCAAAGCTCATTTTGCATATAGGAAC 58.517 34.615 0.00 0.00 37.83 3.62
2558 4978 7.340232 ACTCAAAGCTCATTTTGCATATAGGAA 59.660 33.333 0.00 0.00 37.83 3.36
2559 4979 6.830324 ACTCAAAGCTCATTTTGCATATAGGA 59.170 34.615 0.00 0.00 37.83 2.94
2560 4980 6.916387 CACTCAAAGCTCATTTTGCATATAGG 59.084 38.462 0.00 0.00 37.83 2.57
2561 4981 6.916387 CCACTCAAAGCTCATTTTGCATATAG 59.084 38.462 0.00 0.00 37.83 1.31
2562 4982 6.602803 TCCACTCAAAGCTCATTTTGCATATA 59.397 34.615 0.00 0.00 37.83 0.86
2563 4983 5.419788 TCCACTCAAAGCTCATTTTGCATAT 59.580 36.000 0.00 0.00 37.83 1.78
2564 4984 4.766373 TCCACTCAAAGCTCATTTTGCATA 59.234 37.500 0.00 0.00 37.83 3.14
2565 4985 3.575256 TCCACTCAAAGCTCATTTTGCAT 59.425 39.130 0.00 0.00 37.83 3.96
2566 4986 2.957680 TCCACTCAAAGCTCATTTTGCA 59.042 40.909 0.00 0.00 37.83 4.08
2567 4987 3.648339 TCCACTCAAAGCTCATTTTGC 57.352 42.857 0.00 0.00 37.83 3.68
2568 4988 4.921515 CACATCCACTCAAAGCTCATTTTG 59.078 41.667 0.00 0.00 38.97 2.44
2569 4989 4.586001 ACACATCCACTCAAAGCTCATTTT 59.414 37.500 0.00 0.00 0.00 1.82
2570 4990 4.147321 ACACATCCACTCAAAGCTCATTT 58.853 39.130 0.00 0.00 0.00 2.32
2571 4991 3.759581 ACACATCCACTCAAAGCTCATT 58.240 40.909 0.00 0.00 0.00 2.57
2572 4992 3.430042 ACACATCCACTCAAAGCTCAT 57.570 42.857 0.00 0.00 0.00 2.90
2573 4993 2.936919 ACACATCCACTCAAAGCTCA 57.063 45.000 0.00 0.00 0.00 4.26
2574 4994 3.931578 ACTACACATCCACTCAAAGCTC 58.068 45.455 0.00 0.00 0.00 4.09
2575 4995 4.357918 AACTACACATCCACTCAAAGCT 57.642 40.909 0.00 0.00 0.00 3.74
2576 4996 5.239525 AGAAAACTACACATCCACTCAAAGC 59.760 40.000 0.00 0.00 0.00 3.51
2577 4997 6.073003 GGAGAAAACTACACATCCACTCAAAG 60.073 42.308 0.00 0.00 0.00 2.77
2578 4998 5.763204 GGAGAAAACTACACATCCACTCAAA 59.237 40.000 0.00 0.00 0.00 2.69
2579 4999 5.163248 TGGAGAAAACTACACATCCACTCAA 60.163 40.000 0.00 0.00 32.04 3.02
2580 5000 4.346709 TGGAGAAAACTACACATCCACTCA 59.653 41.667 0.00 0.00 32.04 3.41
2581 5001 4.894784 TGGAGAAAACTACACATCCACTC 58.105 43.478 0.00 0.00 32.04 3.51
2582 5002 4.974645 TGGAGAAAACTACACATCCACT 57.025 40.909 0.00 0.00 32.04 4.00
2583 5003 6.385649 TTTTGGAGAAAACTACACATCCAC 57.614 37.500 0.00 0.00 36.60 4.02
2584 5004 6.378564 TGTTTTTGGAGAAAACTACACATCCA 59.621 34.615 13.51 0.00 39.97 3.41
2585 5005 6.695713 GTGTTTTTGGAGAAAACTACACATCC 59.304 38.462 13.51 0.00 40.24 3.51
2586 5006 7.254852 TGTGTTTTTGGAGAAAACTACACATC 58.745 34.615 13.51 0.00 42.65 3.06
2587 5007 7.164230 TGTGTTTTTGGAGAAAACTACACAT 57.836 32.000 13.51 0.00 42.65 3.21
2588 5008 6.349777 CCTGTGTTTTTGGAGAAAACTACACA 60.350 38.462 13.51 13.33 43.89 3.72
2589 5009 6.033966 CCTGTGTTTTTGGAGAAAACTACAC 58.966 40.000 13.51 9.49 40.57 2.90
2590 5010 5.946972 TCCTGTGTTTTTGGAGAAAACTACA 59.053 36.000 13.51 13.52 39.97 2.74
2591 5011 6.445357 TCCTGTGTTTTTGGAGAAAACTAC 57.555 37.500 13.51 10.74 39.97 2.73
2592 5012 7.469537 TTTCCTGTGTTTTTGGAGAAAACTA 57.530 32.000 13.51 4.66 39.97 2.24
2593 5013 5.993748 TTCCTGTGTTTTTGGAGAAAACT 57.006 34.783 13.51 0.00 39.97 2.66
2594 5014 8.710835 TTATTTCCTGTGTTTTTGGAGAAAAC 57.289 30.769 7.28 7.28 39.78 2.43
2595 5015 9.898152 ATTTATTTCCTGTGTTTTTGGAGAAAA 57.102 25.926 0.00 0.00 0.00 2.29



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.