Multiple sequence alignment - TraesCS2A01G483600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G483600 | chr2A | 100.000 | 2624 | 0 | 0 | 1 | 2624 | 719345745 | 719343122 | 0.000000e+00 | 4846 |
1 | TraesCS2A01G483600 | chr2D | 93.133 | 1063 | 63 | 10 | 1404 | 2459 | 585127910 | 585126851 | 0.000000e+00 | 1550 |
2 | TraesCS2A01G483600 | chr2D | 87.851 | 996 | 63 | 21 | 434 | 1408 | 585134122 | 585133164 | 0.000000e+00 | 1116 |
3 | TraesCS2A01G483600 | chr2D | 94.479 | 163 | 9 | 0 | 2455 | 2617 | 156198247 | 156198409 | 4.340000e-63 | 252 |
4 | TraesCS2A01G483600 | chr2B | 88.551 | 987 | 81 | 17 | 434 | 1402 | 705886922 | 705885950 | 0.000000e+00 | 1168 |
5 | TraesCS2A01G483600 | chr2B | 93.082 | 636 | 32 | 6 | 1398 | 2023 | 705885871 | 705885238 | 0.000000e+00 | 920 |
6 | TraesCS2A01G483600 | chr2B | 91.268 | 355 | 28 | 3 | 2106 | 2459 | 705885230 | 705884878 | 5.080000e-132 | 481 |
7 | TraesCS2A01G483600 | chr6A | 88.679 | 212 | 21 | 2 | 1 | 212 | 615046907 | 615046699 | 3.350000e-64 | 255 |
8 | TraesCS2A01G483600 | chr3B | 88.073 | 218 | 23 | 2 | 1 | 217 | 828935003 | 828935218 | 3.350000e-64 | 255 |
9 | TraesCS2A01G483600 | chr7D | 88.679 | 212 | 19 | 2 | 1 | 212 | 49806800 | 49806594 | 1.210000e-63 | 254 |
10 | TraesCS2A01G483600 | chr7D | 93.902 | 164 | 10 | 0 | 2455 | 2618 | 441858365 | 441858528 | 5.610000e-62 | 248 |
11 | TraesCS2A01G483600 | chr7D | 92.814 | 167 | 12 | 0 | 2458 | 2624 | 229791788 | 229791622 | 2.610000e-60 | 243 |
12 | TraesCS2A01G483600 | chr4D | 95.031 | 161 | 8 | 0 | 2458 | 2618 | 149173908 | 149174068 | 1.210000e-63 | 254 |
13 | TraesCS2A01G483600 | chr4D | 93.413 | 167 | 11 | 0 | 2458 | 2624 | 38523828 | 38523662 | 5.610000e-62 | 248 |
14 | TraesCS2A01G483600 | chrUn | 88.208 | 212 | 21 | 1 | 1 | 212 | 171907427 | 171907634 | 1.560000e-62 | 250 |
15 | TraesCS2A01G483600 | chrUn | 88.208 | 212 | 21 | 1 | 1 | 212 | 287879284 | 287879491 | 1.560000e-62 | 250 |
16 | TraesCS2A01G483600 | chrUn | 86.758 | 219 | 27 | 1 | 1 | 217 | 23376152 | 23375934 | 2.610000e-60 | 243 |
17 | TraesCS2A01G483600 | chrUn | 86.758 | 219 | 27 | 1 | 1 | 217 | 23379556 | 23379338 | 2.610000e-60 | 243 |
18 | TraesCS2A01G483600 | chr3A | 93.413 | 167 | 11 | 0 | 2458 | 2624 | 310636475 | 310636309 | 5.610000e-62 | 248 |
19 | TraesCS2A01G483600 | chr3A | 92.899 | 169 | 12 | 0 | 2456 | 2624 | 739710399 | 739710231 | 2.020000e-61 | 246 |
20 | TraesCS2A01G483600 | chr1D | 93.413 | 167 | 11 | 0 | 2458 | 2624 | 163328895 | 163328729 | 5.610000e-62 | 248 |
21 | TraesCS2A01G483600 | chr5D | 87.793 | 213 | 22 | 3 | 1 | 212 | 120920875 | 120921084 | 2.020000e-61 | 246 |
22 | TraesCS2A01G483600 | chr3D | 92.814 | 167 | 12 | 0 | 2458 | 2624 | 440238485 | 440238319 | 2.610000e-60 | 243 |
23 | TraesCS2A01G483600 | chr1B | 87.156 | 218 | 22 | 3 | 1 | 217 | 683991965 | 683992177 | 2.610000e-60 | 243 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G483600 | chr2A | 719343122 | 719345745 | 2623 | True | 4846.000000 | 4846 | 100.000 | 1 | 2624 | 1 | chr2A.!!$R1 | 2623 |
1 | TraesCS2A01G483600 | chr2D | 585126851 | 585127910 | 1059 | True | 1550.000000 | 1550 | 93.133 | 1404 | 2459 | 1 | chr2D.!!$R1 | 1055 |
2 | TraesCS2A01G483600 | chr2D | 585133164 | 585134122 | 958 | True | 1116.000000 | 1116 | 87.851 | 434 | 1408 | 1 | chr2D.!!$R2 | 974 |
3 | TraesCS2A01G483600 | chr2B | 705884878 | 705886922 | 2044 | True | 856.333333 | 1168 | 90.967 | 434 | 2459 | 3 | chr2B.!!$R1 | 2025 |
4 | TraesCS2A01G483600 | chrUn | 23375934 | 23379556 | 3622 | True | 243.000000 | 243 | 86.758 | 1 | 217 | 2 | chrUn.!!$R1 | 216 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
312 | 315 | 0.035152 | ATGATGCACGCTGGGAAAGA | 60.035 | 50.0 | 0.0 | 0.0 | 0.0 | 2.52 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1786 | 2340 | 2.49647 | AGGAAACATCTGGTACGTCCTC | 59.504 | 50.0 | 0.0 | 0.0 | 32.67 | 3.71 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
22 | 23 | 2.422597 | TCAGAATTTTCGGTGATGCGT | 58.577 | 42.857 | 0.00 | 0.00 | 0.00 | 5.24 |
24 | 25 | 3.997681 | TCAGAATTTTCGGTGATGCGTAA | 59.002 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
26 | 27 | 5.813157 | TCAGAATTTTCGGTGATGCGTAATA | 59.187 | 36.000 | 0.00 | 0.00 | 0.00 | 0.98 |
31 | 32 | 2.816689 | TCGGTGATGCGTAATAAGTGG | 58.183 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
74 | 75 | 0.108756 | GAGGTGCCTACGGTGACTTC | 60.109 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
83 | 84 | 4.152938 | GCCTACGGTGACTTCGTAAATTTT | 59.847 | 41.667 | 0.00 | 0.00 | 41.62 | 1.82 |
99 | 100 | 9.537192 | TCGTAAATTTTAAGATGATATGTCGGT | 57.463 | 29.630 | 0.00 | 0.00 | 0.00 | 4.69 |
114 | 115 | 1.268899 | GTCGGTTCAGTCTTTCGGAGA | 59.731 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
116 | 117 | 3.128242 | GTCGGTTCAGTCTTTCGGAGATA | 59.872 | 47.826 | 0.00 | 0.00 | 36.61 | 1.98 |
140 | 141 | 1.196104 | TAGGGGTAGGGTGTGTGTGC | 61.196 | 60.000 | 0.00 | 0.00 | 0.00 | 4.57 |
181 | 184 | 5.084722 | GGTGAGTGTATACGCGTGTATATC | 58.915 | 45.833 | 26.67 | 20.93 | 43.52 | 1.63 |
183 | 186 | 5.789021 | GTGAGTGTATACGCGTGTATATCAG | 59.211 | 44.000 | 26.67 | 0.00 | 43.52 | 2.90 |
192 | 195 | 0.508641 | GTGTATATCAGCGCTTGCGG | 59.491 | 55.000 | 7.50 | 0.00 | 45.69 | 5.69 |
193 | 196 | 0.104120 | TGTATATCAGCGCTTGCGGT | 59.896 | 50.000 | 7.50 | 14.02 | 45.69 | 5.68 |
207 | 210 | 3.242804 | GCTTGCGGTTGTACTGTGTTAAA | 60.243 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
228 | 231 | 3.726291 | AAAAGAATTGGACCAACGTGG | 57.274 | 42.857 | 9.67 | 0.00 | 45.02 | 4.94 |
229 | 232 | 1.616159 | AAGAATTGGACCAACGTGGG | 58.384 | 50.000 | 9.67 | 7.67 | 43.37 | 4.61 |
230 | 233 | 0.251165 | AGAATTGGACCAACGTGGGG | 60.251 | 55.000 | 15.05 | 9.59 | 43.37 | 4.96 |
231 | 234 | 0.538746 | GAATTGGACCAACGTGGGGT | 60.539 | 55.000 | 15.05 | 13.18 | 43.37 | 4.95 |
232 | 235 | 0.772384 | AATTGGACCAACGTGGGGTA | 59.228 | 50.000 | 15.05 | 0.00 | 43.37 | 3.69 |
233 | 236 | 0.996583 | ATTGGACCAACGTGGGGTAT | 59.003 | 50.000 | 15.05 | 0.91 | 43.37 | 2.73 |
234 | 237 | 0.772384 | TTGGACCAACGTGGGGTATT | 59.228 | 50.000 | 15.05 | 0.00 | 43.37 | 1.89 |
235 | 238 | 0.772384 | TGGACCAACGTGGGGTATTT | 59.228 | 50.000 | 15.05 | 0.00 | 43.37 | 1.40 |
236 | 239 | 1.271488 | TGGACCAACGTGGGGTATTTC | 60.271 | 52.381 | 15.05 | 0.39 | 43.37 | 2.17 |
237 | 240 | 1.456296 | GACCAACGTGGGGTATTTCC | 58.544 | 55.000 | 15.05 | 0.00 | 43.37 | 3.13 |
238 | 241 | 1.003928 | GACCAACGTGGGGTATTTCCT | 59.996 | 52.381 | 15.05 | 0.00 | 43.37 | 3.36 |
239 | 242 | 1.003928 | ACCAACGTGGGGTATTTCCTC | 59.996 | 52.381 | 15.05 | 0.00 | 43.37 | 3.71 |
240 | 243 | 1.365699 | CAACGTGGGGTATTTCCTCG | 58.634 | 55.000 | 0.00 | 0.00 | 44.04 | 4.63 |
241 | 244 | 2.674958 | ACGTGGGGTATTTCCTCGT | 58.325 | 52.632 | 4.69 | 4.69 | 45.70 | 4.18 |
242 | 245 | 3.357504 | CGTGGGGTATTTCCTCGTC | 57.642 | 57.895 | 0.00 | 0.00 | 40.23 | 4.20 |
243 | 246 | 0.822164 | CGTGGGGTATTTCCTCGTCT | 59.178 | 55.000 | 0.00 | 0.00 | 40.23 | 4.18 |
244 | 247 | 2.026641 | CGTGGGGTATTTCCTCGTCTA | 58.973 | 52.381 | 0.00 | 0.00 | 40.23 | 2.59 |
245 | 248 | 2.428171 | CGTGGGGTATTTCCTCGTCTAA | 59.572 | 50.000 | 0.00 | 0.00 | 40.23 | 2.10 |
246 | 249 | 3.736126 | CGTGGGGTATTTCCTCGTCTAAC | 60.736 | 52.174 | 0.00 | 0.00 | 40.23 | 2.34 |
247 | 250 | 3.450096 | GTGGGGTATTTCCTCGTCTAACT | 59.550 | 47.826 | 0.00 | 0.00 | 40.23 | 2.24 |
248 | 251 | 4.646492 | GTGGGGTATTTCCTCGTCTAACTA | 59.354 | 45.833 | 0.00 | 0.00 | 40.23 | 2.24 |
249 | 252 | 5.127682 | GTGGGGTATTTCCTCGTCTAACTAA | 59.872 | 44.000 | 0.00 | 0.00 | 40.23 | 2.24 |
250 | 253 | 5.127682 | TGGGGTATTTCCTCGTCTAACTAAC | 59.872 | 44.000 | 0.00 | 0.00 | 40.23 | 2.34 |
251 | 254 | 5.277047 | GGGTATTTCCTCGTCTAACTAACG | 58.723 | 45.833 | 0.00 | 0.00 | 41.39 | 3.18 |
252 | 255 | 4.737279 | GGTATTTCCTCGTCTAACTAACGC | 59.263 | 45.833 | 0.00 | 0.00 | 39.90 | 4.84 |
253 | 256 | 2.927553 | TTCCTCGTCTAACTAACGCC | 57.072 | 50.000 | 0.00 | 0.00 | 39.90 | 5.68 |
254 | 257 | 2.119801 | TCCTCGTCTAACTAACGCCT | 57.880 | 50.000 | 0.00 | 0.00 | 39.90 | 5.52 |
255 | 258 | 1.741706 | TCCTCGTCTAACTAACGCCTG | 59.258 | 52.381 | 0.00 | 0.00 | 39.90 | 4.85 |
256 | 259 | 1.546834 | CTCGTCTAACTAACGCCTGC | 58.453 | 55.000 | 0.00 | 0.00 | 39.90 | 4.85 |
257 | 260 | 0.179181 | TCGTCTAACTAACGCCTGCG | 60.179 | 55.000 | 10.40 | 10.40 | 46.03 | 5.18 |
270 | 273 | 1.284982 | GCCTGCGTGCGTCATATAGG | 61.285 | 60.000 | 0.00 | 0.00 | 0.00 | 2.57 |
275 | 278 | 1.666311 | GCGTGCGTCATATAGGAGGAC | 60.666 | 57.143 | 11.02 | 5.17 | 35.45 | 3.85 |
277 | 280 | 2.095668 | CGTGCGTCATATAGGAGGACTC | 60.096 | 54.545 | 11.02 | 3.36 | 36.69 | 3.36 |
281 | 284 | 3.189702 | GCGTCATATAGGAGGACTCAGAC | 59.810 | 52.174 | 11.02 | 0.00 | 36.69 | 3.51 |
283 | 286 | 5.067273 | CGTCATATAGGAGGACTCAGACTT | 58.933 | 45.833 | 0.91 | 0.00 | 36.69 | 3.01 |
287 | 290 | 4.618378 | ATAGGAGGACTCAGACTTTCCT | 57.382 | 45.455 | 1.32 | 6.16 | 42.79 | 3.36 |
288 | 291 | 5.735733 | ATAGGAGGACTCAGACTTTCCTA | 57.264 | 43.478 | 9.19 | 9.19 | 40.02 | 2.94 |
289 | 292 | 4.618378 | AGGAGGACTCAGACTTTCCTAT | 57.382 | 45.455 | 1.32 | 0.00 | 40.02 | 2.57 |
290 | 293 | 4.285863 | AGGAGGACTCAGACTTTCCTATG | 58.714 | 47.826 | 1.32 | 0.00 | 40.02 | 2.23 |
291 | 294 | 3.386402 | GGAGGACTCAGACTTTCCTATGG | 59.614 | 52.174 | 1.32 | 0.00 | 40.02 | 2.74 |
294 | 297 | 5.284582 | AGGACTCAGACTTTCCTATGGAAT | 58.715 | 41.667 | 0.00 | 0.00 | 41.71 | 3.01 |
296 | 299 | 5.129485 | GGACTCAGACTTTCCTATGGAATGA | 59.871 | 44.000 | 15.93 | 8.89 | 41.71 | 2.57 |
299 | 302 | 5.371526 | TCAGACTTTCCTATGGAATGATGC | 58.628 | 41.667 | 15.93 | 7.41 | 41.71 | 3.91 |
301 | 304 | 5.008415 | CAGACTTTCCTATGGAATGATGCAC | 59.992 | 44.000 | 15.93 | 0.00 | 41.71 | 4.57 |
302 | 305 | 3.879295 | ACTTTCCTATGGAATGATGCACG | 59.121 | 43.478 | 15.93 | 0.00 | 41.71 | 5.34 |
303 | 306 | 1.882912 | TCCTATGGAATGATGCACGC | 58.117 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
304 | 307 | 1.417517 | TCCTATGGAATGATGCACGCT | 59.582 | 47.619 | 0.00 | 0.00 | 0.00 | 5.07 |
305 | 308 | 1.534163 | CCTATGGAATGATGCACGCTG | 59.466 | 52.381 | 0.00 | 0.00 | 0.00 | 5.18 |
306 | 309 | 1.534163 | CTATGGAATGATGCACGCTGG | 59.466 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
308 | 311 | 1.451927 | GGAATGATGCACGCTGGGA | 60.452 | 57.895 | 0.00 | 0.00 | 0.00 | 4.37 |
310 | 313 | 0.810648 | GAATGATGCACGCTGGGAAA | 59.189 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
311 | 314 | 0.813184 | AATGATGCACGCTGGGAAAG | 59.187 | 50.000 | 0.00 | 0.00 | 0.00 | 2.62 |
312 | 315 | 0.035152 | ATGATGCACGCTGGGAAAGA | 60.035 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
313 | 316 | 0.250684 | TGATGCACGCTGGGAAAGAA | 60.251 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
314 | 317 | 0.881118 | GATGCACGCTGGGAAAGAAA | 59.119 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
315 | 318 | 1.269448 | GATGCACGCTGGGAAAGAAAA | 59.731 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
316 | 319 | 0.667993 | TGCACGCTGGGAAAGAAAAG | 59.332 | 50.000 | 0.00 | 0.00 | 0.00 | 2.27 |
317 | 320 | 0.951558 | GCACGCTGGGAAAGAAAAGA | 59.048 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
318 | 321 | 1.541588 | GCACGCTGGGAAAGAAAAGAT | 59.458 | 47.619 | 0.00 | 0.00 | 0.00 | 2.40 |
319 | 322 | 2.747446 | GCACGCTGGGAAAGAAAAGATA | 59.253 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
320 | 323 | 3.426292 | GCACGCTGGGAAAGAAAAGATAC | 60.426 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
321 | 324 | 4.003648 | CACGCTGGGAAAGAAAAGATACT | 58.996 | 43.478 | 0.00 | 0.00 | 0.00 | 2.12 |
322 | 325 | 5.175859 | CACGCTGGGAAAGAAAAGATACTA | 58.824 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
323 | 326 | 5.642063 | CACGCTGGGAAAGAAAAGATACTAA | 59.358 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
324 | 327 | 5.875359 | ACGCTGGGAAAGAAAAGATACTAAG | 59.125 | 40.000 | 0.00 | 0.00 | 0.00 | 2.18 |
326 | 329 | 6.594159 | CGCTGGGAAAGAAAAGATACTAAGAA | 59.406 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
328 | 331 | 8.237949 | GCTGGGAAAGAAAAGATACTAAGAAAC | 58.762 | 37.037 | 0.00 | 0.00 | 0.00 | 2.78 |
330 | 333 | 8.221944 | TGGGAAAGAAAAGATACTAAGAAACCA | 58.778 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
335 | 338 | 9.503399 | AAGAAAAGATACTAAGAAACCACGATT | 57.497 | 29.630 | 0.00 | 0.00 | 0.00 | 3.34 |
336 | 339 | 9.152595 | AGAAAAGATACTAAGAAACCACGATTC | 57.847 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
337 | 340 | 7.845066 | AAAGATACTAAGAAACCACGATTCC | 57.155 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
339 | 342 | 7.184067 | AGATACTAAGAAACCACGATTCCTT | 57.816 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
340 | 343 | 7.621796 | AGATACTAAGAAACCACGATTCCTTT | 58.378 | 34.615 | 0.00 | 0.00 | 0.00 | 3.11 |
343 | 346 | 7.668525 | ACTAAGAAACCACGATTCCTTTAAG | 57.331 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
344 | 347 | 5.959618 | AAGAAACCACGATTCCTTTAAGG | 57.040 | 39.130 | 4.29 | 4.29 | 36.46 | 2.69 |
345 | 348 | 3.756963 | AGAAACCACGATTCCTTTAAGGC | 59.243 | 43.478 | 6.05 | 0.00 | 34.61 | 4.35 |
346 | 349 | 1.734163 | ACCACGATTCCTTTAAGGCG | 58.266 | 50.000 | 6.05 | 7.03 | 34.61 | 5.52 |
347 | 350 | 1.276989 | ACCACGATTCCTTTAAGGCGA | 59.723 | 47.619 | 14.54 | 3.41 | 34.61 | 5.54 |
350 | 353 | 1.997606 | ACGATTCCTTTAAGGCGAACG | 59.002 | 47.619 | 14.54 | 13.39 | 34.61 | 3.95 |
351 | 354 | 1.326548 | CGATTCCTTTAAGGCGAACGG | 59.673 | 52.381 | 6.05 | 0.00 | 34.61 | 4.44 |
371 | 374 | 2.520741 | CCGTGGTGTTTGGGCCTT | 60.521 | 61.111 | 4.53 | 0.00 | 0.00 | 4.35 |
372 | 375 | 2.561037 | CCGTGGTGTTTGGGCCTTC | 61.561 | 63.158 | 4.53 | 0.00 | 0.00 | 3.46 |
373 | 376 | 2.561037 | CGTGGTGTTTGGGCCTTCC | 61.561 | 63.158 | 4.53 | 0.56 | 0.00 | 3.46 |
374 | 377 | 1.152546 | GTGGTGTTTGGGCCTTCCT | 60.153 | 57.895 | 4.53 | 0.00 | 36.20 | 3.36 |
375 | 378 | 1.152567 | TGGTGTTTGGGCCTTCCTG | 60.153 | 57.895 | 4.53 | 0.00 | 36.20 | 3.86 |
376 | 379 | 2.574018 | GGTGTTTGGGCCTTCCTGC | 61.574 | 63.158 | 4.53 | 0.00 | 36.20 | 4.85 |
377 | 380 | 1.531602 | GTGTTTGGGCCTTCCTGCT | 60.532 | 57.895 | 4.53 | 0.00 | 36.20 | 4.24 |
378 | 381 | 1.115326 | GTGTTTGGGCCTTCCTGCTT | 61.115 | 55.000 | 4.53 | 0.00 | 36.20 | 3.91 |
379 | 382 | 1.114722 | TGTTTGGGCCTTCCTGCTTG | 61.115 | 55.000 | 4.53 | 0.00 | 36.20 | 4.01 |
381 | 384 | 0.480690 | TTTGGGCCTTCCTGCTTGTA | 59.519 | 50.000 | 4.53 | 0.00 | 36.20 | 2.41 |
382 | 385 | 0.251165 | TTGGGCCTTCCTGCTTGTAC | 60.251 | 55.000 | 4.53 | 0.00 | 36.20 | 2.90 |
383 | 386 | 1.378762 | GGGCCTTCCTGCTTGTACA | 59.621 | 57.895 | 0.84 | 0.00 | 0.00 | 2.90 |
384 | 387 | 0.251165 | GGGCCTTCCTGCTTGTACAA | 60.251 | 55.000 | 8.28 | 8.28 | 0.00 | 2.41 |
387 | 390 | 1.537202 | GCCTTCCTGCTTGTACAACAG | 59.463 | 52.381 | 21.51 | 21.51 | 0.00 | 3.16 |
388 | 391 | 2.851195 | CCTTCCTGCTTGTACAACAGT | 58.149 | 47.619 | 24.11 | 0.00 | 0.00 | 3.55 |
389 | 392 | 2.549754 | CCTTCCTGCTTGTACAACAGTG | 59.450 | 50.000 | 24.11 | 18.71 | 0.00 | 3.66 |
390 | 393 | 1.593196 | TCCTGCTTGTACAACAGTGC | 58.407 | 50.000 | 24.11 | 18.29 | 32.65 | 4.40 |
393 | 396 | 0.655208 | TGCTTGTACAACAGTGCGTG | 59.345 | 50.000 | 3.59 | 0.00 | 33.99 | 5.34 |
394 | 397 | 0.657368 | GCTTGTACAACAGTGCGTGC | 60.657 | 55.000 | 3.59 | 0.07 | 0.00 | 5.34 |
396 | 399 | 0.375454 | TTGTACAACAGTGCGTGCAC | 59.625 | 50.000 | 16.91 | 16.91 | 46.50 | 4.57 |
408 | 411 | 3.479269 | GTGCACGTGCGAGCTACC | 61.479 | 66.667 | 33.22 | 12.35 | 45.83 | 3.18 |
409 | 412 | 3.680786 | TGCACGTGCGAGCTACCT | 61.681 | 61.111 | 33.22 | 0.00 | 45.83 | 3.08 |
411 | 414 | 1.586564 | GCACGTGCGAGCTACCTAG | 60.587 | 63.158 | 26.77 | 0.00 | 0.00 | 3.02 |
421 | 424 | 1.447314 | GCTACCTAGCGTTGGCGTT | 60.447 | 57.895 | 0.00 | 0.00 | 46.35 | 4.84 |
422 | 425 | 1.017701 | GCTACCTAGCGTTGGCGTTT | 61.018 | 55.000 | 0.00 | 0.00 | 46.35 | 3.60 |
423 | 426 | 0.997196 | CTACCTAGCGTTGGCGTTTC | 59.003 | 55.000 | 0.00 | 0.00 | 46.35 | 2.78 |
424 | 427 | 0.390209 | TACCTAGCGTTGGCGTTTCC | 60.390 | 55.000 | 0.00 | 0.00 | 46.35 | 3.13 |
425 | 428 | 2.396157 | CCTAGCGTTGGCGTTTCCC | 61.396 | 63.158 | 0.00 | 0.00 | 46.35 | 3.97 |
426 | 429 | 1.375523 | CTAGCGTTGGCGTTTCCCT | 60.376 | 57.895 | 0.00 | 0.00 | 46.35 | 4.20 |
427 | 430 | 1.359459 | CTAGCGTTGGCGTTTCCCTC | 61.359 | 60.000 | 0.00 | 0.00 | 46.35 | 4.30 |
428 | 431 | 2.102109 | TAGCGTTGGCGTTTCCCTCA | 62.102 | 55.000 | 0.00 | 0.00 | 46.35 | 3.86 |
429 | 432 | 2.332654 | GCGTTGGCGTTTCCCTCAT | 61.333 | 57.895 | 0.00 | 0.00 | 40.81 | 2.90 |
431 | 434 | 0.953471 | CGTTGGCGTTTCCCTCATCA | 60.953 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
432 | 435 | 0.804989 | GTTGGCGTTTCCCTCATCAG | 59.195 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
454 | 887 | 1.373748 | TAGCGTTGGCGAGTTGGAC | 60.374 | 57.895 | 0.00 | 0.00 | 46.35 | 4.02 |
480 | 914 | 4.222145 | TCATCCAATACCTTATACTCCGGC | 59.778 | 45.833 | 0.00 | 0.00 | 0.00 | 6.13 |
487 | 921 | 2.498885 | ACCTTATACTCCGGCGAACTTT | 59.501 | 45.455 | 9.30 | 0.00 | 0.00 | 2.66 |
497 | 931 | 2.018324 | GCGAACTTTTGCAGCCAGC | 61.018 | 57.895 | 0.00 | 0.00 | 45.96 | 4.85 |
570 | 1007 | 2.677003 | CCAAACCACAGCGGCTACG | 61.677 | 63.158 | 0.26 | 0.00 | 44.63 | 3.51 |
633 | 1070 | 3.565902 | TCATGTGCTCGTGTCCTATCTAG | 59.434 | 47.826 | 7.79 | 0.00 | 32.85 | 2.43 |
640 | 1077 | 4.658063 | CTCGTGTCCTATCTAGGGATCTT | 58.342 | 47.826 | 3.47 | 0.00 | 43.79 | 2.40 |
645 | 1082 | 4.420552 | TGTCCTATCTAGGGATCTTGGAGT | 59.579 | 45.833 | 3.47 | 0.00 | 43.79 | 3.85 |
656 | 1102 | 6.875469 | AGGGATCTTGGAGTTGGTATAGATA | 58.125 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
657 | 1103 | 7.313731 | AGGGATCTTGGAGTTGGTATAGATAA | 58.686 | 38.462 | 0.00 | 0.00 | 0.00 | 1.75 |
664 | 1110 | 6.449956 | TGGAGTTGGTATAGATAAGTTCCCT | 58.550 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
673 | 1119 | 4.917906 | AGATAAGTTCCCTGTCAAAGCT | 57.082 | 40.909 | 0.00 | 0.00 | 0.00 | 3.74 |
676 | 1122 | 2.736670 | AGTTCCCTGTCAAAGCTGTT | 57.263 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
678 | 1124 | 1.264288 | GTTCCCTGTCAAAGCTGTTCG | 59.736 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
681 | 1127 | 1.581934 | CCTGTCAAAGCTGTTCGTCA | 58.418 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
688 | 1134 | 4.988065 | GCTGTTCGTCACTGCCTA | 57.012 | 55.556 | 7.73 | 0.00 | 43.00 | 3.93 |
693 | 1139 | 3.676324 | GCTGTTCGTCACTGCCTATAAGT | 60.676 | 47.826 | 7.73 | 0.00 | 43.00 | 2.24 |
697 | 1143 | 3.093814 | TCGTCACTGCCTATAAGTTCCA | 58.906 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
734 | 1180 | 6.445357 | TCTCATGTAACGATTGCAGTAGTA | 57.555 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
774 | 1224 | 0.179161 | CTGCGGTTCTCGATCGTCTT | 60.179 | 55.000 | 15.94 | 0.00 | 42.43 | 3.01 |
822 | 1277 | 4.537135 | TTTTTCAGCGGAGATACTGTCT | 57.463 | 40.909 | 0.00 | 0.00 | 40.81 | 3.41 |
823 | 1278 | 4.537135 | TTTTCAGCGGAGATACTGTCTT | 57.463 | 40.909 | 0.00 | 0.00 | 37.29 | 3.01 |
824 | 1279 | 3.510388 | TTCAGCGGAGATACTGTCTTG | 57.490 | 47.619 | 0.00 | 0.00 | 37.29 | 3.02 |
826 | 1281 | 3.291584 | TCAGCGGAGATACTGTCTTGAT | 58.708 | 45.455 | 0.00 | 0.00 | 37.29 | 2.57 |
828 | 1283 | 4.887655 | TCAGCGGAGATACTGTCTTGATTA | 59.112 | 41.667 | 0.00 | 0.00 | 37.29 | 1.75 |
829 | 1284 | 5.536538 | TCAGCGGAGATACTGTCTTGATTAT | 59.463 | 40.000 | 0.00 | 0.00 | 37.29 | 1.28 |
830 | 1285 | 5.861251 | CAGCGGAGATACTGTCTTGATTATC | 59.139 | 44.000 | 0.00 | 0.00 | 37.29 | 1.75 |
832 | 1287 | 6.266558 | AGCGGAGATACTGTCTTGATTATCTT | 59.733 | 38.462 | 0.00 | 0.00 | 37.29 | 2.40 |
834 | 1289 | 8.082852 | GCGGAGATACTGTCTTGATTATCTTTA | 58.917 | 37.037 | 0.00 | 0.00 | 37.29 | 1.85 |
867 | 1324 | 8.654230 | CATAGTGTGCTAATACTGTCTTGATT | 57.346 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
869 | 1326 | 9.973450 | ATAGTGTGCTAATACTGTCTTGATTAG | 57.027 | 33.333 | 4.44 | 4.44 | 36.60 | 1.73 |
920 | 1377 | 8.860128 | CGCACATATTCGTCAATATACTAATGT | 58.140 | 33.333 | 0.00 | 0.00 | 33.99 | 2.71 |
929 | 1386 | 9.908152 | TCGTCAATATACTAATGTCGAATGATT | 57.092 | 29.630 | 0.00 | 0.00 | 33.15 | 2.57 |
1131 | 1591 | 3.763897 | CGGAACTTGAGAAAAATCCCCAT | 59.236 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
1204 | 1664 | 0.969894 | ACTCCTGTGGAAGTTCGAGG | 59.030 | 55.000 | 8.86 | 8.23 | 0.00 | 4.63 |
1205 | 1665 | 0.247736 | CTCCTGTGGAAGTTCGAGGG | 59.752 | 60.000 | 12.09 | 7.22 | 0.00 | 4.30 |
1284 | 1744 | 4.095483 | GTGATGATGACTGAATCCACAACC | 59.905 | 45.833 | 0.00 | 0.00 | 0.00 | 3.77 |
1437 | 1980 | 5.620206 | TCAGTTTATGTCACATTCTGGTGT | 58.380 | 37.500 | 0.00 | 0.00 | 39.76 | 4.16 |
1523 | 2066 | 3.805066 | TGTGAAATCTGGGTCCAATGA | 57.195 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
1536 | 2079 | 3.446873 | GGTCCAATGACATAATTGTGCCA | 59.553 | 43.478 | 1.57 | 0.00 | 43.65 | 4.92 |
1589 | 2140 | 5.483937 | TCTCTAAGAGAGGCTCTATCTCGAT | 59.516 | 44.000 | 18.75 | 0.80 | 46.38 | 3.59 |
1666 | 2220 | 0.250901 | ACTCAAGGTGAATGCCGCTT | 60.251 | 50.000 | 0.00 | 0.00 | 0.00 | 4.68 |
1668 | 2222 | 2.083774 | CTCAAGGTGAATGCCGCTTTA | 58.916 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
1684 | 2238 | 5.461737 | GCCGCTTTATTTTGCATTGCTTATA | 59.538 | 36.000 | 10.49 | 2.54 | 0.00 | 0.98 |
1685 | 2239 | 6.146021 | GCCGCTTTATTTTGCATTGCTTATAT | 59.854 | 34.615 | 10.49 | 2.09 | 0.00 | 0.86 |
1791 | 2345 | 8.713271 | CAAGTTAGAGACTTATTGTTTGAGGAC | 58.287 | 37.037 | 0.00 | 0.00 | 46.75 | 3.85 |
1807 | 2361 | 2.496470 | GAGGACGTACCAGATGTTTCCT | 59.504 | 50.000 | 0.00 | 0.00 | 42.04 | 3.36 |
1808 | 2362 | 2.233922 | AGGACGTACCAGATGTTTCCTG | 59.766 | 50.000 | 0.00 | 0.00 | 42.04 | 3.86 |
1875 | 2429 | 2.485814 | GGTCTGAGGTCAAAGTGAATGC | 59.514 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
2026 | 2588 | 5.451242 | GGGATTCTGTTTTGTACTTGCACAA | 60.451 | 40.000 | 0.00 | 0.00 | 36.65 | 3.33 |
2027 | 2589 | 5.687285 | GGATTCTGTTTTGTACTTGCACAAG | 59.313 | 40.000 | 8.82 | 8.82 | 39.46 | 3.16 |
2029 | 2591 | 3.115554 | CTGTTTTGTACTTGCACAAGCC | 58.884 | 45.455 | 10.26 | 2.46 | 41.99 | 4.35 |
2044 | 2606 | 4.579869 | CACAAGCCTGTCTTACCATACTT | 58.420 | 43.478 | 0.00 | 0.00 | 31.64 | 2.24 |
2104 | 2666 | 2.080286 | TTGGTAGCTCTTCTTCACGC | 57.920 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
2281 | 4395 | 5.422214 | ACAGTAATGGAAGGTTAGTCTGG | 57.578 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
2313 | 4427 | 4.409570 | GTGCAGCTTGAGTTGTATCAATG | 58.590 | 43.478 | 0.00 | 0.00 | 38.47 | 2.82 |
2316 | 4430 | 5.704978 | TGCAGCTTGAGTTGTATCAATGTTA | 59.295 | 36.000 | 0.00 | 0.00 | 38.47 | 2.41 |
2414 | 4834 | 4.689612 | AGGTTGTGTGTCTGATAAGTGT | 57.310 | 40.909 | 0.00 | 0.00 | 0.00 | 3.55 |
2451 | 4871 | 3.262915 | GCCTGGAGATGCAGTATTATCCT | 59.737 | 47.826 | 0.00 | 0.00 | 0.00 | 3.24 |
2460 | 4880 | 3.258372 | TGCAGTATTATCCTCGCTAAGGG | 59.742 | 47.826 | 2.49 | 0.00 | 46.23 | 3.95 |
2461 | 4881 | 3.851098 | CAGTATTATCCTCGCTAAGGGC | 58.149 | 50.000 | 2.49 | 0.00 | 46.23 | 5.19 |
2462 | 4882 | 3.511934 | CAGTATTATCCTCGCTAAGGGCT | 59.488 | 47.826 | 2.49 | 0.00 | 46.23 | 5.19 |
2463 | 4883 | 3.764972 | AGTATTATCCTCGCTAAGGGCTC | 59.235 | 47.826 | 2.49 | 0.00 | 46.23 | 4.70 |
2465 | 4885 | 2.310779 | TATCCTCGCTAAGGGCTCAT | 57.689 | 50.000 | 2.49 | 0.00 | 46.23 | 2.90 |
2467 | 4887 | 0.753262 | TCCTCGCTAAGGGCTCATTC | 59.247 | 55.000 | 2.49 | 0.00 | 46.23 | 2.67 |
2468 | 4888 | 0.598680 | CCTCGCTAAGGGCTCATTCG | 60.599 | 60.000 | 0.00 | 0.00 | 42.03 | 3.34 |
2472 | 4892 | 1.751437 | GCTAAGGGCTCATTCGGTTT | 58.249 | 50.000 | 0.00 | 0.00 | 38.06 | 3.27 |
2473 | 4893 | 1.401905 | GCTAAGGGCTCATTCGGTTTG | 59.598 | 52.381 | 0.00 | 0.00 | 38.06 | 2.93 |
2474 | 4894 | 2.939640 | GCTAAGGGCTCATTCGGTTTGA | 60.940 | 50.000 | 0.00 | 0.00 | 38.06 | 2.69 |
2476 | 4896 | 1.826385 | AGGGCTCATTCGGTTTGAAG | 58.174 | 50.000 | 0.00 | 0.00 | 40.65 | 3.02 |
2477 | 4897 | 0.811281 | GGGCTCATTCGGTTTGAAGG | 59.189 | 55.000 | 0.00 | 0.00 | 40.65 | 3.46 |
2478 | 4898 | 1.613255 | GGGCTCATTCGGTTTGAAGGA | 60.613 | 52.381 | 0.00 | 0.00 | 44.52 | 3.36 |
2479 | 4899 | 2.159382 | GGCTCATTCGGTTTGAAGGAA | 58.841 | 47.619 | 0.00 | 0.00 | 45.83 | 3.36 |
2481 | 4901 | 3.565516 | GCTCATTCGGTTTGAAGGAAAC | 58.434 | 45.455 | 0.00 | 0.00 | 45.83 | 2.78 |
2491 | 4911 | 5.091910 | GTTTGAAGGAAACCAGAACGTAG | 57.908 | 43.478 | 0.00 | 0.00 | 38.45 | 3.51 |
2492 | 4912 | 3.396260 | TGAAGGAAACCAGAACGTAGG | 57.604 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
2493 | 4913 | 2.967201 | TGAAGGAAACCAGAACGTAGGA | 59.033 | 45.455 | 8.42 | 0.00 | 0.00 | 2.94 |
2494 | 4914 | 3.388676 | TGAAGGAAACCAGAACGTAGGAA | 59.611 | 43.478 | 8.42 | 0.00 | 0.00 | 3.36 |
2495 | 4915 | 4.041198 | TGAAGGAAACCAGAACGTAGGAAT | 59.959 | 41.667 | 8.42 | 0.00 | 0.00 | 3.01 |
2496 | 4916 | 4.635699 | AGGAAACCAGAACGTAGGAATT | 57.364 | 40.909 | 8.42 | 3.67 | 0.00 | 2.17 |
2497 | 4917 | 5.750352 | AGGAAACCAGAACGTAGGAATTA | 57.250 | 39.130 | 8.42 | 0.00 | 0.00 | 1.40 |
2498 | 4918 | 5.731591 | AGGAAACCAGAACGTAGGAATTAG | 58.268 | 41.667 | 8.42 | 0.00 | 0.00 | 1.73 |
2499 | 4919 | 4.874396 | GGAAACCAGAACGTAGGAATTAGG | 59.126 | 45.833 | 8.42 | 0.00 | 0.00 | 2.69 |
2500 | 4920 | 5.337813 | GGAAACCAGAACGTAGGAATTAGGA | 60.338 | 44.000 | 8.42 | 0.00 | 0.00 | 2.94 |
2501 | 4921 | 5.340439 | AACCAGAACGTAGGAATTAGGAG | 57.660 | 43.478 | 8.42 | 0.00 | 0.00 | 3.69 |
2502 | 4922 | 4.351127 | ACCAGAACGTAGGAATTAGGAGT | 58.649 | 43.478 | 8.42 | 0.00 | 0.00 | 3.85 |
2503 | 4923 | 5.513233 | ACCAGAACGTAGGAATTAGGAGTA | 58.487 | 41.667 | 8.42 | 0.00 | 0.00 | 2.59 |
2504 | 4924 | 5.593502 | ACCAGAACGTAGGAATTAGGAGTAG | 59.406 | 44.000 | 8.42 | 0.00 | 0.00 | 2.57 |
2505 | 4925 | 5.593502 | CCAGAACGTAGGAATTAGGAGTAGT | 59.406 | 44.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2506 | 4926 | 6.769822 | CCAGAACGTAGGAATTAGGAGTAGTA | 59.230 | 42.308 | 0.00 | 0.00 | 0.00 | 1.82 |
2507 | 4927 | 7.447853 | CCAGAACGTAGGAATTAGGAGTAGTAT | 59.552 | 40.741 | 0.00 | 0.00 | 0.00 | 2.12 |
2508 | 4928 | 9.499479 | CAGAACGTAGGAATTAGGAGTAGTATA | 57.501 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
2509 | 4929 | 9.723601 | AGAACGTAGGAATTAGGAGTAGTATAG | 57.276 | 37.037 | 0.00 | 0.00 | 0.00 | 1.31 |
2510 | 4930 | 8.860780 | AACGTAGGAATTAGGAGTAGTATAGG | 57.139 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
2511 | 4931 | 8.212259 | ACGTAGGAATTAGGAGTAGTATAGGA | 57.788 | 38.462 | 0.00 | 0.00 | 0.00 | 2.94 |
2512 | 4932 | 8.664079 | ACGTAGGAATTAGGAGTAGTATAGGAA | 58.336 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
2513 | 4933 | 9.683870 | CGTAGGAATTAGGAGTAGTATAGGAAT | 57.316 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
2529 | 4949 | 9.386122 | AGTATAGGAATTTGATAGGATGACACT | 57.614 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
2531 | 4951 | 8.915057 | ATAGGAATTTGATAGGATGACACTTG | 57.085 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
2532 | 4952 | 5.591877 | AGGAATTTGATAGGATGACACTTGC | 59.408 | 40.000 | 0.00 | 0.00 | 0.00 | 4.01 |
2533 | 4953 | 5.221126 | GGAATTTGATAGGATGACACTTGCC | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2534 | 4954 | 3.998913 | TTGATAGGATGACACTTGCCA | 57.001 | 42.857 | 0.00 | 0.00 | 0.00 | 4.92 |
2535 | 4955 | 4.508551 | TTGATAGGATGACACTTGCCAT | 57.491 | 40.909 | 0.00 | 0.00 | 0.00 | 4.40 |
2536 | 4956 | 4.077300 | TGATAGGATGACACTTGCCATC | 57.923 | 45.455 | 0.00 | 0.00 | 38.66 | 3.51 |
2542 | 4962 | 4.142609 | GATGACACTTGCCATCCTAAGA | 57.857 | 45.455 | 0.00 | 0.00 | 34.60 | 2.10 |
2543 | 4963 | 4.517285 | GATGACACTTGCCATCCTAAGAA | 58.483 | 43.478 | 0.00 | 0.00 | 34.60 | 2.52 |
2544 | 4964 | 4.365514 | TGACACTTGCCATCCTAAGAAA | 57.634 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
2545 | 4965 | 4.922206 | TGACACTTGCCATCCTAAGAAAT | 58.078 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
2546 | 4966 | 5.324409 | TGACACTTGCCATCCTAAGAAATT | 58.676 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
2547 | 4967 | 5.183713 | TGACACTTGCCATCCTAAGAAATTG | 59.816 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2548 | 4968 | 5.324409 | ACACTTGCCATCCTAAGAAATTGA | 58.676 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
2549 | 4969 | 5.183904 | ACACTTGCCATCCTAAGAAATTGAC | 59.816 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2550 | 4970 | 5.416952 | CACTTGCCATCCTAAGAAATTGACT | 59.583 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2551 | 4971 | 6.012745 | ACTTGCCATCCTAAGAAATTGACTT | 58.987 | 36.000 | 0.00 | 4.11 | 0.00 | 3.01 |
2552 | 4972 | 5.902613 | TGCCATCCTAAGAAATTGACTTG | 57.097 | 39.130 | 7.97 | 0.88 | 0.00 | 3.16 |
2553 | 4973 | 4.158394 | TGCCATCCTAAGAAATTGACTTGC | 59.842 | 41.667 | 7.97 | 3.69 | 0.00 | 4.01 |
2554 | 4974 | 4.731773 | GCCATCCTAAGAAATTGACTTGCG | 60.732 | 45.833 | 7.97 | 0.00 | 0.00 | 4.85 |
2555 | 4975 | 4.396166 | CCATCCTAAGAAATTGACTTGCGT | 59.604 | 41.667 | 7.97 | 0.00 | 0.00 | 5.24 |
2556 | 4976 | 5.447818 | CCATCCTAAGAAATTGACTTGCGTC | 60.448 | 44.000 | 7.97 | 0.00 | 40.64 | 5.19 |
2557 | 4977 | 3.678072 | TCCTAAGAAATTGACTTGCGTCG | 59.322 | 43.478 | 7.97 | 0.00 | 43.21 | 5.12 |
2558 | 4978 | 3.432252 | CCTAAGAAATTGACTTGCGTCGT | 59.568 | 43.478 | 7.97 | 0.00 | 43.21 | 4.34 |
2559 | 4979 | 3.963383 | AAGAAATTGACTTGCGTCGTT | 57.037 | 38.095 | 0.00 | 0.00 | 43.21 | 3.85 |
2560 | 4980 | 3.521524 | AGAAATTGACTTGCGTCGTTC | 57.478 | 42.857 | 0.00 | 0.00 | 43.21 | 3.95 |
2561 | 4981 | 2.223377 | AGAAATTGACTTGCGTCGTTCC | 59.777 | 45.455 | 0.00 | 0.00 | 43.21 | 3.62 |
2562 | 4982 | 1.878953 | AATTGACTTGCGTCGTTCCT | 58.121 | 45.000 | 0.00 | 0.00 | 43.21 | 3.36 |
2563 | 4983 | 2.736144 | ATTGACTTGCGTCGTTCCTA | 57.264 | 45.000 | 0.00 | 0.00 | 43.21 | 2.94 |
2564 | 4984 | 2.736144 | TTGACTTGCGTCGTTCCTAT | 57.264 | 45.000 | 0.00 | 0.00 | 43.21 | 2.57 |
2565 | 4985 | 3.853831 | TTGACTTGCGTCGTTCCTATA | 57.146 | 42.857 | 0.00 | 0.00 | 43.21 | 1.31 |
2566 | 4986 | 4.380841 | TTGACTTGCGTCGTTCCTATAT | 57.619 | 40.909 | 0.00 | 0.00 | 43.21 | 0.86 |
2567 | 4987 | 3.702330 | TGACTTGCGTCGTTCCTATATG | 58.298 | 45.455 | 0.00 | 0.00 | 43.21 | 1.78 |
2568 | 4988 | 2.470821 | ACTTGCGTCGTTCCTATATGC | 58.529 | 47.619 | 0.00 | 0.00 | 0.00 | 3.14 |
2569 | 4989 | 2.159156 | ACTTGCGTCGTTCCTATATGCA | 60.159 | 45.455 | 0.00 | 0.00 | 33.50 | 3.96 |
2570 | 4990 | 2.588027 | TGCGTCGTTCCTATATGCAA | 57.412 | 45.000 | 0.00 | 0.00 | 32.45 | 4.08 |
2571 | 4991 | 2.894902 | TGCGTCGTTCCTATATGCAAA | 58.105 | 42.857 | 0.00 | 0.00 | 32.45 | 3.68 |
2572 | 4992 | 3.263261 | TGCGTCGTTCCTATATGCAAAA | 58.737 | 40.909 | 0.00 | 0.00 | 32.45 | 2.44 |
2573 | 4993 | 3.874543 | TGCGTCGTTCCTATATGCAAAAT | 59.125 | 39.130 | 0.00 | 0.00 | 32.45 | 1.82 |
2574 | 4994 | 4.211389 | GCGTCGTTCCTATATGCAAAATG | 58.789 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
2575 | 4995 | 4.025229 | GCGTCGTTCCTATATGCAAAATGA | 60.025 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
2576 | 4996 | 5.670097 | CGTCGTTCCTATATGCAAAATGAG | 58.330 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
2577 | 4997 | 5.444122 | GTCGTTCCTATATGCAAAATGAGC | 58.556 | 41.667 | 0.00 | 0.00 | 0.00 | 4.26 |
2578 | 4998 | 5.237344 | GTCGTTCCTATATGCAAAATGAGCT | 59.763 | 40.000 | 0.00 | 0.00 | 0.00 | 4.09 |
2579 | 4999 | 5.822519 | TCGTTCCTATATGCAAAATGAGCTT | 59.177 | 36.000 | 0.00 | 0.00 | 0.00 | 3.74 |
2580 | 5000 | 6.318648 | TCGTTCCTATATGCAAAATGAGCTTT | 59.681 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
2581 | 5001 | 6.415867 | CGTTCCTATATGCAAAATGAGCTTTG | 59.584 | 38.462 | 0.00 | 0.00 | 38.97 | 2.77 |
2582 | 5002 | 7.483307 | GTTCCTATATGCAAAATGAGCTTTGA | 58.517 | 34.615 | 0.00 | 0.00 | 38.35 | 2.69 |
2583 | 5003 | 7.268199 | TCCTATATGCAAAATGAGCTTTGAG | 57.732 | 36.000 | 0.00 | 0.00 | 38.35 | 3.02 |
2584 | 5004 | 6.830324 | TCCTATATGCAAAATGAGCTTTGAGT | 59.170 | 34.615 | 0.00 | 0.00 | 38.35 | 3.41 |
2585 | 5005 | 6.916387 | CCTATATGCAAAATGAGCTTTGAGTG | 59.084 | 38.462 | 0.00 | 0.00 | 38.35 | 3.51 |
2586 | 5006 | 3.374220 | TGCAAAATGAGCTTTGAGTGG | 57.626 | 42.857 | 0.00 | 0.00 | 38.35 | 4.00 |
2587 | 5007 | 2.957680 | TGCAAAATGAGCTTTGAGTGGA | 59.042 | 40.909 | 0.00 | 0.00 | 38.35 | 4.02 |
2588 | 5008 | 3.575256 | TGCAAAATGAGCTTTGAGTGGAT | 59.425 | 39.130 | 0.00 | 0.00 | 38.35 | 3.41 |
2589 | 5009 | 3.924686 | GCAAAATGAGCTTTGAGTGGATG | 59.075 | 43.478 | 0.00 | 0.00 | 38.35 | 3.51 |
2590 | 5010 | 4.560108 | GCAAAATGAGCTTTGAGTGGATGT | 60.560 | 41.667 | 0.00 | 0.00 | 38.35 | 3.06 |
2591 | 5011 | 4.778534 | AAATGAGCTTTGAGTGGATGTG | 57.221 | 40.909 | 0.00 | 0.00 | 0.00 | 3.21 |
2592 | 5012 | 2.936919 | TGAGCTTTGAGTGGATGTGT | 57.063 | 45.000 | 0.00 | 0.00 | 0.00 | 3.72 |
2593 | 5013 | 4.558226 | ATGAGCTTTGAGTGGATGTGTA | 57.442 | 40.909 | 0.00 | 0.00 | 0.00 | 2.90 |
2594 | 5014 | 3.930336 | TGAGCTTTGAGTGGATGTGTAG | 58.070 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
2595 | 5015 | 3.324846 | TGAGCTTTGAGTGGATGTGTAGT | 59.675 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
2596 | 5016 | 4.202357 | TGAGCTTTGAGTGGATGTGTAGTT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
2597 | 5017 | 4.718961 | AGCTTTGAGTGGATGTGTAGTTT | 58.281 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
2598 | 5018 | 5.133221 | AGCTTTGAGTGGATGTGTAGTTTT | 58.867 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
2599 | 5019 | 5.239525 | AGCTTTGAGTGGATGTGTAGTTTTC | 59.760 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2600 | 5020 | 5.239525 | GCTTTGAGTGGATGTGTAGTTTTCT | 59.760 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2601 | 5021 | 6.566753 | GCTTTGAGTGGATGTGTAGTTTTCTC | 60.567 | 42.308 | 0.00 | 0.00 | 0.00 | 2.87 |
2602 | 5022 | 4.894784 | TGAGTGGATGTGTAGTTTTCTCC | 58.105 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
2603 | 5023 | 4.346709 | TGAGTGGATGTGTAGTTTTCTCCA | 59.653 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
2604 | 5024 | 5.163248 | TGAGTGGATGTGTAGTTTTCTCCAA | 60.163 | 40.000 | 0.00 | 0.00 | 34.75 | 3.53 |
2605 | 5025 | 5.690865 | AGTGGATGTGTAGTTTTCTCCAAA | 58.309 | 37.500 | 0.00 | 0.00 | 34.75 | 3.28 |
2606 | 5026 | 6.126409 | AGTGGATGTGTAGTTTTCTCCAAAA | 58.874 | 36.000 | 0.00 | 0.00 | 34.75 | 2.44 |
2607 | 5027 | 6.605594 | AGTGGATGTGTAGTTTTCTCCAAAAA | 59.394 | 34.615 | 0.00 | 0.00 | 34.75 | 1.94 |
2608 | 5028 | 6.695713 | GTGGATGTGTAGTTTTCTCCAAAAAC | 59.304 | 38.462 | 5.47 | 5.47 | 39.67 | 2.43 |
2609 | 5029 | 6.378564 | TGGATGTGTAGTTTTCTCCAAAAACA | 59.621 | 34.615 | 13.91 | 0.75 | 41.29 | 2.83 |
2610 | 5030 | 6.695713 | GGATGTGTAGTTTTCTCCAAAAACAC | 59.304 | 38.462 | 13.91 | 9.61 | 40.55 | 3.32 |
2611 | 5031 | 6.576662 | TGTGTAGTTTTCTCCAAAAACACA | 57.423 | 33.333 | 13.91 | 11.26 | 44.02 | 3.72 |
2612 | 5032 | 6.616947 | TGTGTAGTTTTCTCCAAAAACACAG | 58.383 | 36.000 | 13.91 | 0.00 | 42.73 | 3.66 |
2613 | 5033 | 6.033966 | GTGTAGTTTTCTCCAAAAACACAGG | 58.966 | 40.000 | 13.91 | 0.00 | 40.21 | 4.00 |
2614 | 5034 | 5.946972 | TGTAGTTTTCTCCAAAAACACAGGA | 59.053 | 36.000 | 13.91 | 0.00 | 41.29 | 3.86 |
2615 | 5035 | 5.993748 | AGTTTTCTCCAAAAACACAGGAA | 57.006 | 34.783 | 13.91 | 0.00 | 41.29 | 3.36 |
2616 | 5036 | 6.353404 | AGTTTTCTCCAAAAACACAGGAAA | 57.647 | 33.333 | 13.91 | 0.00 | 41.29 | 3.13 |
2617 | 5037 | 6.946340 | AGTTTTCTCCAAAAACACAGGAAAT | 58.054 | 32.000 | 13.91 | 0.00 | 41.29 | 2.17 |
2618 | 5038 | 8.073467 | AGTTTTCTCCAAAAACACAGGAAATA | 57.927 | 30.769 | 13.91 | 0.00 | 41.29 | 1.40 |
2619 | 5039 | 8.536175 | AGTTTTCTCCAAAAACACAGGAAATAA | 58.464 | 29.630 | 13.91 | 0.00 | 41.29 | 1.40 |
2620 | 5040 | 9.157104 | GTTTTCTCCAAAAACACAGGAAATAAA | 57.843 | 29.630 | 8.17 | 0.00 | 39.30 | 1.40 |
2621 | 5041 | 9.898152 | TTTTCTCCAAAAACACAGGAAATAAAT | 57.102 | 25.926 | 0.00 | 0.00 | 0.00 | 1.40 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
5 | 6 | 6.410914 | CACTTATTACGCATCACCGAAAATTC | 59.589 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
6 | 7 | 6.255215 | CACTTATTACGCATCACCGAAAATT | 58.745 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
11 | 12 | 2.482316 | CCCACTTATTACGCATCACCGA | 60.482 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
13 | 14 | 3.131396 | CTCCCACTTATTACGCATCACC | 58.869 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
15 | 16 | 3.035363 | TCCTCCCACTTATTACGCATCA | 58.965 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
22 | 23 | 3.703052 | GGAACGTCTCCTCCCACTTATTA | 59.297 | 47.826 | 8.87 | 0.00 | 41.61 | 0.98 |
24 | 25 | 2.108970 | GGAACGTCTCCTCCCACTTAT | 58.891 | 52.381 | 8.87 | 0.00 | 41.61 | 1.73 |
26 | 27 | 2.363297 | GGAACGTCTCCTCCCACTT | 58.637 | 57.895 | 8.87 | 0.00 | 41.61 | 3.16 |
45 | 46 | 0.678684 | TAGGCACCTCGTCATCGACA | 60.679 | 55.000 | 0.00 | 0.00 | 41.35 | 4.35 |
83 | 84 | 6.961360 | AGACTGAACCGACATATCATCTTA | 57.039 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
95 | 96 | 1.612676 | TCTCCGAAAGACTGAACCGA | 58.387 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
99 | 100 | 6.263392 | CCTATGAGTATCTCCGAAAGACTGAA | 59.737 | 42.308 | 0.00 | 0.00 | 36.65 | 3.02 |
114 | 115 | 3.209152 | ACACACCCTACCCCTATGAGTAT | 59.791 | 47.826 | 0.00 | 0.00 | 0.00 | 2.12 |
116 | 117 | 1.365028 | ACACACCCTACCCCTATGAGT | 59.635 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
140 | 141 | 2.202046 | CCTATAAATGCGCGCGCG | 60.202 | 61.111 | 45.73 | 45.73 | 45.51 | 6.86 |
149 | 152 | 5.336213 | CGCGTATACACTCACCCCTATAAAT | 60.336 | 44.000 | 0.00 | 0.00 | 0.00 | 1.40 |
152 | 155 | 3.076621 | CGCGTATACACTCACCCCTATA | 58.923 | 50.000 | 0.00 | 0.00 | 0.00 | 1.31 |
181 | 184 | 2.173382 | GTACAACCGCAAGCGCTG | 59.827 | 61.111 | 12.58 | 6.58 | 38.24 | 5.18 |
183 | 186 | 2.173382 | CAGTACAACCGCAAGCGC | 59.827 | 61.111 | 9.26 | 0.00 | 38.24 | 5.92 |
207 | 210 | 3.181470 | CCCACGTTGGTCCAATTCTTTTT | 60.181 | 43.478 | 7.77 | 0.00 | 35.17 | 1.94 |
211 | 214 | 0.251165 | CCCCACGTTGGTCCAATTCT | 60.251 | 55.000 | 7.77 | 0.00 | 35.17 | 2.40 |
214 | 217 | 0.996583 | ATACCCCACGTTGGTCCAAT | 59.003 | 50.000 | 7.77 | 0.00 | 37.31 | 3.16 |
217 | 220 | 1.456296 | GAAATACCCCACGTTGGTCC | 58.544 | 55.000 | 9.72 | 0.00 | 37.31 | 4.46 |
218 | 221 | 1.003928 | AGGAAATACCCCACGTTGGTC | 59.996 | 52.381 | 9.72 | 0.00 | 40.05 | 4.02 |
219 | 222 | 1.003928 | GAGGAAATACCCCACGTTGGT | 59.996 | 52.381 | 11.08 | 11.08 | 40.05 | 3.67 |
220 | 223 | 1.746470 | GAGGAAATACCCCACGTTGG | 58.254 | 55.000 | 0.00 | 0.00 | 40.05 | 3.77 |
221 | 224 | 1.338389 | ACGAGGAAATACCCCACGTTG | 60.338 | 52.381 | 0.00 | 0.00 | 39.07 | 4.10 |
222 | 225 | 0.978907 | ACGAGGAAATACCCCACGTT | 59.021 | 50.000 | 0.00 | 0.00 | 39.07 | 3.99 |
223 | 226 | 0.533951 | GACGAGGAAATACCCCACGT | 59.466 | 55.000 | 4.47 | 4.47 | 42.33 | 4.49 |
224 | 227 | 0.822164 | AGACGAGGAAATACCCCACG | 59.178 | 55.000 | 0.00 | 0.00 | 40.05 | 4.94 |
225 | 228 | 3.450096 | AGTTAGACGAGGAAATACCCCAC | 59.550 | 47.826 | 0.00 | 0.00 | 40.05 | 4.61 |
226 | 229 | 3.716431 | AGTTAGACGAGGAAATACCCCA | 58.284 | 45.455 | 0.00 | 0.00 | 40.05 | 4.96 |
227 | 230 | 5.595885 | GTTAGTTAGACGAGGAAATACCCC | 58.404 | 45.833 | 0.00 | 0.00 | 40.05 | 4.95 |
228 | 231 | 5.277047 | CGTTAGTTAGACGAGGAAATACCC | 58.723 | 45.833 | 0.00 | 0.00 | 42.82 | 3.69 |
229 | 232 | 4.737279 | GCGTTAGTTAGACGAGGAAATACC | 59.263 | 45.833 | 0.33 | 0.00 | 42.82 | 2.73 |
230 | 233 | 4.737279 | GGCGTTAGTTAGACGAGGAAATAC | 59.263 | 45.833 | 0.33 | 0.00 | 42.82 | 1.89 |
231 | 234 | 4.641989 | AGGCGTTAGTTAGACGAGGAAATA | 59.358 | 41.667 | 0.33 | 0.00 | 42.82 | 1.40 |
232 | 235 | 3.446516 | AGGCGTTAGTTAGACGAGGAAAT | 59.553 | 43.478 | 0.33 | 0.00 | 42.82 | 2.17 |
233 | 236 | 2.821969 | AGGCGTTAGTTAGACGAGGAAA | 59.178 | 45.455 | 0.33 | 0.00 | 42.82 | 3.13 |
234 | 237 | 2.163010 | CAGGCGTTAGTTAGACGAGGAA | 59.837 | 50.000 | 0.33 | 0.00 | 42.82 | 3.36 |
235 | 238 | 1.741706 | CAGGCGTTAGTTAGACGAGGA | 59.258 | 52.381 | 0.33 | 0.00 | 42.82 | 3.71 |
236 | 239 | 1.798079 | GCAGGCGTTAGTTAGACGAGG | 60.798 | 57.143 | 0.33 | 0.00 | 42.82 | 4.63 |
237 | 240 | 1.546834 | GCAGGCGTTAGTTAGACGAG | 58.453 | 55.000 | 0.33 | 0.00 | 42.82 | 4.18 |
238 | 241 | 0.179181 | CGCAGGCGTTAGTTAGACGA | 60.179 | 55.000 | 5.34 | 0.00 | 42.82 | 4.20 |
239 | 242 | 2.275703 | CGCAGGCGTTAGTTAGACG | 58.724 | 57.895 | 5.34 | 0.00 | 43.04 | 4.18 |
251 | 254 | 1.284982 | CCTATATGACGCACGCAGGC | 61.285 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
252 | 255 | 0.313987 | TCCTATATGACGCACGCAGG | 59.686 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
253 | 256 | 1.667177 | CCTCCTATATGACGCACGCAG | 60.667 | 57.143 | 0.00 | 0.00 | 0.00 | 5.18 |
254 | 257 | 0.313987 | CCTCCTATATGACGCACGCA | 59.686 | 55.000 | 0.00 | 0.00 | 0.00 | 5.24 |
255 | 258 | 0.596577 | TCCTCCTATATGACGCACGC | 59.403 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
256 | 259 | 1.880675 | AGTCCTCCTATATGACGCACG | 59.119 | 52.381 | 0.00 | 0.00 | 34.24 | 5.34 |
257 | 260 | 2.885266 | TGAGTCCTCCTATATGACGCAC | 59.115 | 50.000 | 0.00 | 0.00 | 34.58 | 5.34 |
258 | 261 | 3.149981 | CTGAGTCCTCCTATATGACGCA | 58.850 | 50.000 | 0.00 | 0.00 | 36.65 | 5.24 |
259 | 262 | 3.189702 | GTCTGAGTCCTCCTATATGACGC | 59.810 | 52.174 | 0.00 | 0.00 | 34.24 | 5.19 |
260 | 263 | 4.647611 | AGTCTGAGTCCTCCTATATGACG | 58.352 | 47.826 | 0.00 | 0.00 | 34.24 | 4.35 |
261 | 264 | 6.015772 | GGAAAGTCTGAGTCCTCCTATATGAC | 60.016 | 46.154 | 6.41 | 0.00 | 0.00 | 3.06 |
262 | 265 | 6.071984 | GGAAAGTCTGAGTCCTCCTATATGA | 58.928 | 44.000 | 6.41 | 0.00 | 0.00 | 2.15 |
263 | 266 | 6.074648 | AGGAAAGTCTGAGTCCTCCTATATG | 58.925 | 44.000 | 12.24 | 0.00 | 37.15 | 1.78 |
266 | 269 | 4.618378 | AGGAAAGTCTGAGTCCTCCTAT | 57.382 | 45.455 | 12.24 | 0.00 | 37.15 | 2.57 |
270 | 273 | 4.282496 | TCCATAGGAAAGTCTGAGTCCTC | 58.718 | 47.826 | 7.55 | 0.00 | 41.01 | 3.71 |
275 | 278 | 5.469421 | GCATCATTCCATAGGAAAGTCTGAG | 59.531 | 44.000 | 2.16 | 0.00 | 45.41 | 3.35 |
277 | 280 | 5.008415 | GTGCATCATTCCATAGGAAAGTCTG | 59.992 | 44.000 | 2.16 | 3.11 | 45.41 | 3.51 |
281 | 284 | 3.304257 | GCGTGCATCATTCCATAGGAAAG | 60.304 | 47.826 | 2.16 | 0.00 | 45.41 | 2.62 |
283 | 286 | 2.158769 | AGCGTGCATCATTCCATAGGAA | 60.159 | 45.455 | 0.30 | 0.30 | 46.39 | 3.36 |
287 | 290 | 1.596603 | CCAGCGTGCATCATTCCATA | 58.403 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
288 | 291 | 1.105167 | CCCAGCGTGCATCATTCCAT | 61.105 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
289 | 292 | 1.750018 | CCCAGCGTGCATCATTCCA | 60.750 | 57.895 | 0.00 | 0.00 | 0.00 | 3.53 |
290 | 293 | 1.031571 | TTCCCAGCGTGCATCATTCC | 61.032 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
291 | 294 | 0.810648 | TTTCCCAGCGTGCATCATTC | 59.189 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
294 | 297 | 0.250684 | TTCTTTCCCAGCGTGCATCA | 60.251 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
296 | 299 | 1.270550 | CTTTTCTTTCCCAGCGTGCAT | 59.729 | 47.619 | 0.00 | 0.00 | 0.00 | 3.96 |
299 | 302 | 4.003648 | AGTATCTTTTCTTTCCCAGCGTG | 58.996 | 43.478 | 0.00 | 0.00 | 0.00 | 5.34 |
301 | 304 | 6.106673 | TCTTAGTATCTTTTCTTTCCCAGCG | 58.893 | 40.000 | 0.00 | 0.00 | 0.00 | 5.18 |
302 | 305 | 7.923414 | TTCTTAGTATCTTTTCTTTCCCAGC | 57.077 | 36.000 | 0.00 | 0.00 | 0.00 | 4.85 |
303 | 306 | 8.731605 | GGTTTCTTAGTATCTTTTCTTTCCCAG | 58.268 | 37.037 | 0.00 | 0.00 | 0.00 | 4.45 |
304 | 307 | 8.221944 | TGGTTTCTTAGTATCTTTTCTTTCCCA | 58.778 | 33.333 | 0.00 | 0.00 | 0.00 | 4.37 |
305 | 308 | 8.512956 | GTGGTTTCTTAGTATCTTTTCTTTCCC | 58.487 | 37.037 | 0.00 | 0.00 | 0.00 | 3.97 |
306 | 309 | 8.228464 | CGTGGTTTCTTAGTATCTTTTCTTTCC | 58.772 | 37.037 | 0.00 | 0.00 | 0.00 | 3.13 |
308 | 311 | 8.897872 | TCGTGGTTTCTTAGTATCTTTTCTTT | 57.102 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
310 | 313 | 9.152595 | GAATCGTGGTTTCTTAGTATCTTTTCT | 57.847 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
311 | 314 | 8.388853 | GGAATCGTGGTTTCTTAGTATCTTTTC | 58.611 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
312 | 315 | 8.101419 | AGGAATCGTGGTTTCTTAGTATCTTTT | 58.899 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
313 | 316 | 7.621796 | AGGAATCGTGGTTTCTTAGTATCTTT | 58.378 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
314 | 317 | 7.184067 | AGGAATCGTGGTTTCTTAGTATCTT | 57.816 | 36.000 | 0.00 | 0.00 | 0.00 | 2.40 |
315 | 318 | 6.793505 | AGGAATCGTGGTTTCTTAGTATCT | 57.206 | 37.500 | 0.00 | 0.00 | 0.00 | 1.98 |
316 | 319 | 7.845066 | AAAGGAATCGTGGTTTCTTAGTATC | 57.155 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
317 | 320 | 9.379791 | CTTAAAGGAATCGTGGTTTCTTAGTAT | 57.620 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
318 | 321 | 7.820872 | CCTTAAAGGAATCGTGGTTTCTTAGTA | 59.179 | 37.037 | 0.00 | 0.00 | 37.67 | 1.82 |
319 | 322 | 6.653740 | CCTTAAAGGAATCGTGGTTTCTTAGT | 59.346 | 38.462 | 0.00 | 0.00 | 37.67 | 2.24 |
320 | 323 | 6.403309 | GCCTTAAAGGAATCGTGGTTTCTTAG | 60.403 | 42.308 | 0.00 | 0.00 | 37.67 | 2.18 |
321 | 324 | 5.413523 | GCCTTAAAGGAATCGTGGTTTCTTA | 59.586 | 40.000 | 0.00 | 0.00 | 37.67 | 2.10 |
322 | 325 | 4.217767 | GCCTTAAAGGAATCGTGGTTTCTT | 59.782 | 41.667 | 0.00 | 0.00 | 37.67 | 2.52 |
323 | 326 | 3.756963 | GCCTTAAAGGAATCGTGGTTTCT | 59.243 | 43.478 | 0.00 | 0.00 | 37.67 | 2.52 |
324 | 327 | 3.425758 | CGCCTTAAAGGAATCGTGGTTTC | 60.426 | 47.826 | 0.00 | 0.00 | 37.67 | 2.78 |
326 | 329 | 2.081462 | CGCCTTAAAGGAATCGTGGTT | 58.919 | 47.619 | 0.00 | 0.00 | 37.67 | 3.67 |
328 | 331 | 2.018542 | TCGCCTTAAAGGAATCGTGG | 57.981 | 50.000 | 0.00 | 0.00 | 37.67 | 4.94 |
330 | 333 | 1.997606 | CGTTCGCCTTAAAGGAATCGT | 59.002 | 47.619 | 0.00 | 0.00 | 37.67 | 3.73 |
335 | 338 | 1.376295 | GCCCGTTCGCCTTAAAGGA | 60.376 | 57.895 | 0.00 | 0.00 | 37.67 | 3.36 |
336 | 339 | 2.404186 | GGCCCGTTCGCCTTAAAGG | 61.404 | 63.158 | 0.00 | 0.00 | 46.10 | 3.11 |
337 | 340 | 3.184206 | GGCCCGTTCGCCTTAAAG | 58.816 | 61.111 | 0.00 | 0.00 | 46.10 | 1.85 |
354 | 357 | 2.520741 | AAGGCCCAAACACCACGG | 60.521 | 61.111 | 0.00 | 0.00 | 0.00 | 4.94 |
355 | 358 | 2.561037 | GGAAGGCCCAAACACCACG | 61.561 | 63.158 | 0.00 | 0.00 | 34.14 | 4.94 |
356 | 359 | 1.152546 | AGGAAGGCCCAAACACCAC | 60.153 | 57.895 | 0.00 | 0.00 | 37.41 | 4.16 |
357 | 360 | 1.152567 | CAGGAAGGCCCAAACACCA | 60.153 | 57.895 | 0.00 | 0.00 | 37.41 | 4.17 |
358 | 361 | 2.574018 | GCAGGAAGGCCCAAACACC | 61.574 | 63.158 | 0.00 | 0.00 | 37.41 | 4.16 |
359 | 362 | 1.115326 | AAGCAGGAAGGCCCAAACAC | 61.115 | 55.000 | 0.00 | 0.00 | 37.41 | 3.32 |
361 | 364 | 1.115326 | ACAAGCAGGAAGGCCCAAAC | 61.115 | 55.000 | 0.00 | 0.00 | 37.41 | 2.93 |
363 | 366 | 0.251165 | GTACAAGCAGGAAGGCCCAA | 60.251 | 55.000 | 0.00 | 0.00 | 37.41 | 4.12 |
365 | 368 | 0.251165 | TTGTACAAGCAGGAAGGCCC | 60.251 | 55.000 | 3.59 | 0.00 | 33.31 | 5.80 |
366 | 369 | 0.881796 | GTTGTACAAGCAGGAAGGCC | 59.118 | 55.000 | 8.98 | 0.00 | 0.00 | 5.19 |
367 | 370 | 1.537202 | CTGTTGTACAAGCAGGAAGGC | 59.463 | 52.381 | 21.06 | 5.56 | 0.00 | 4.35 |
368 | 371 | 2.549754 | CACTGTTGTACAAGCAGGAAGG | 59.450 | 50.000 | 27.09 | 16.75 | 34.79 | 3.46 |
371 | 374 | 1.593196 | GCACTGTTGTACAAGCAGGA | 58.407 | 50.000 | 27.09 | 1.76 | 34.79 | 3.86 |
372 | 375 | 0.235665 | CGCACTGTTGTACAAGCAGG | 59.764 | 55.000 | 27.09 | 20.61 | 34.79 | 4.85 |
373 | 376 | 0.937304 | ACGCACTGTTGTACAAGCAG | 59.063 | 50.000 | 24.39 | 24.39 | 31.22 | 4.24 |
374 | 377 | 0.655208 | CACGCACTGTTGTACAAGCA | 59.345 | 50.000 | 8.98 | 9.31 | 31.22 | 3.91 |
375 | 378 | 0.657368 | GCACGCACTGTTGTACAAGC | 60.657 | 55.000 | 8.98 | 8.00 | 0.00 | 4.01 |
376 | 379 | 0.655208 | TGCACGCACTGTTGTACAAG | 59.345 | 50.000 | 8.98 | 0.05 | 0.00 | 3.16 |
377 | 380 | 0.375454 | GTGCACGCACTGTTGTACAA | 59.625 | 50.000 | 14.81 | 3.59 | 43.12 | 2.41 |
378 | 381 | 1.757346 | CGTGCACGCACTGTTGTACA | 61.757 | 55.000 | 28.16 | 0.00 | 44.16 | 2.90 |
379 | 382 | 1.083657 | CGTGCACGCACTGTTGTAC | 60.084 | 57.895 | 28.16 | 0.00 | 44.16 | 2.90 |
381 | 384 | 2.817834 | ACGTGCACGCACTGTTGT | 60.818 | 55.556 | 37.35 | 14.16 | 44.16 | 3.32 |
382 | 385 | 2.351097 | CACGTGCACGCACTGTTG | 60.351 | 61.111 | 37.35 | 23.25 | 44.16 | 3.33 |
383 | 386 | 4.236416 | GCACGTGCACGCACTGTT | 62.236 | 61.111 | 37.35 | 15.76 | 44.16 | 3.16 |
390 | 393 | 3.827784 | GTAGCTCGCACGTGCACG | 61.828 | 66.667 | 37.03 | 35.99 | 46.33 | 5.34 |
393 | 396 | 1.586564 | CTAGGTAGCTCGCACGTGC | 60.587 | 63.158 | 30.42 | 30.42 | 37.78 | 5.34 |
394 | 397 | 1.586564 | GCTAGGTAGCTCGCACGTG | 60.587 | 63.158 | 12.28 | 12.28 | 45.62 | 4.49 |
396 | 399 | 2.352457 | CGCTAGGTAGCTCGCACG | 60.352 | 66.667 | 17.34 | 5.52 | 46.85 | 5.34 |
397 | 400 | 1.139095 | AACGCTAGGTAGCTCGCAC | 59.861 | 57.895 | 17.34 | 0.00 | 46.85 | 5.34 |
398 | 401 | 1.138883 | CAACGCTAGGTAGCTCGCA | 59.861 | 57.895 | 17.34 | 0.00 | 46.85 | 5.10 |
399 | 402 | 1.589196 | CCAACGCTAGGTAGCTCGC | 60.589 | 63.158 | 8.31 | 8.31 | 46.85 | 5.03 |
400 | 403 | 1.589196 | GCCAACGCTAGGTAGCTCG | 60.589 | 63.158 | 0.00 | 0.00 | 46.85 | 5.03 |
401 | 404 | 1.589196 | CGCCAACGCTAGGTAGCTC | 60.589 | 63.158 | 0.00 | 0.00 | 46.85 | 4.09 |
402 | 405 | 1.885163 | AACGCCAACGCTAGGTAGCT | 61.885 | 55.000 | 7.39 | 0.00 | 46.85 | 3.32 |
404 | 407 | 0.997196 | GAAACGCCAACGCTAGGTAG | 59.003 | 55.000 | 0.00 | 0.00 | 45.53 | 3.18 |
406 | 409 | 1.670083 | GGAAACGCCAACGCTAGGT | 60.670 | 57.895 | 0.00 | 0.00 | 45.53 | 3.08 |
408 | 411 | 1.359459 | GAGGGAAACGCCAACGCTAG | 61.359 | 60.000 | 0.00 | 0.00 | 45.53 | 3.42 |
409 | 412 | 1.375013 | GAGGGAAACGCCAACGCTA | 60.375 | 57.895 | 0.00 | 0.00 | 45.53 | 4.26 |
411 | 414 | 2.253414 | GATGAGGGAAACGCCAACGC | 62.253 | 60.000 | 0.00 | 0.00 | 45.53 | 4.84 |
413 | 416 | 0.804989 | CTGATGAGGGAAACGCCAAC | 59.195 | 55.000 | 0.00 | 0.00 | 38.95 | 3.77 |
414 | 417 | 0.690192 | TCTGATGAGGGAAACGCCAA | 59.310 | 50.000 | 0.00 | 0.00 | 38.95 | 4.52 |
415 | 418 | 0.690192 | TTCTGATGAGGGAAACGCCA | 59.310 | 50.000 | 0.00 | 0.00 | 38.95 | 5.69 |
416 | 419 | 1.339151 | ACTTCTGATGAGGGAAACGCC | 60.339 | 52.381 | 0.00 | 0.00 | 0.00 | 5.68 |
417 | 420 | 2.100605 | ACTTCTGATGAGGGAAACGC | 57.899 | 50.000 | 0.00 | 0.00 | 0.00 | 4.84 |
418 | 421 | 3.190874 | GCTACTTCTGATGAGGGAAACG | 58.809 | 50.000 | 0.00 | 0.00 | 0.00 | 3.60 |
419 | 422 | 3.190874 | CGCTACTTCTGATGAGGGAAAC | 58.809 | 50.000 | 0.00 | 0.00 | 0.00 | 2.78 |
421 | 424 | 2.457598 | ACGCTACTTCTGATGAGGGAA | 58.542 | 47.619 | 0.00 | 0.00 | 0.00 | 3.97 |
422 | 425 | 2.145397 | ACGCTACTTCTGATGAGGGA | 57.855 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
423 | 426 | 2.544685 | CAACGCTACTTCTGATGAGGG | 58.455 | 52.381 | 0.00 | 2.64 | 0.00 | 4.30 |
424 | 427 | 2.544685 | CCAACGCTACTTCTGATGAGG | 58.455 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
425 | 428 | 1.929836 | GCCAACGCTACTTCTGATGAG | 59.070 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
426 | 429 | 1.735700 | CGCCAACGCTACTTCTGATGA | 60.736 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
427 | 430 | 0.647410 | CGCCAACGCTACTTCTGATG | 59.353 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
428 | 431 | 0.530744 | TCGCCAACGCTACTTCTGAT | 59.469 | 50.000 | 0.00 | 0.00 | 39.84 | 2.90 |
429 | 432 | 0.109272 | CTCGCCAACGCTACTTCTGA | 60.109 | 55.000 | 0.00 | 0.00 | 39.84 | 3.27 |
431 | 434 | 0.317479 | AACTCGCCAACGCTACTTCT | 59.683 | 50.000 | 0.00 | 0.00 | 39.84 | 2.85 |
432 | 435 | 0.438830 | CAACTCGCCAACGCTACTTC | 59.561 | 55.000 | 0.00 | 0.00 | 39.84 | 3.01 |
454 | 887 | 6.390721 | CGGAGTATAAGGTATTGGATGAGTG | 58.609 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
462 | 895 | 3.928727 | TCGCCGGAGTATAAGGTATTG | 57.071 | 47.619 | 5.05 | 0.00 | 0.00 | 1.90 |
470 | 903 | 2.273557 | GCAAAAGTTCGCCGGAGTATA | 58.726 | 47.619 | 5.05 | 0.00 | 0.00 | 1.47 |
471 | 904 | 1.084289 | GCAAAAGTTCGCCGGAGTAT | 58.916 | 50.000 | 5.05 | 0.00 | 0.00 | 2.12 |
480 | 914 | 4.233408 | GCTGGCTGCAAAAGTTCG | 57.767 | 55.556 | 11.80 | 0.00 | 42.31 | 3.95 |
500 | 934 | 3.927481 | GACTTGGGGAGGTGCTGCC | 62.927 | 68.421 | 0.00 | 0.00 | 41.42 | 4.85 |
501 | 935 | 2.360475 | GACTTGGGGAGGTGCTGC | 60.360 | 66.667 | 0.00 | 0.00 | 0.00 | 5.25 |
502 | 936 | 1.002868 | CTGACTTGGGGAGGTGCTG | 60.003 | 63.158 | 0.00 | 0.00 | 0.00 | 4.41 |
503 | 937 | 1.152030 | TCTGACTTGGGGAGGTGCT | 60.152 | 57.895 | 0.00 | 0.00 | 0.00 | 4.40 |
504 | 938 | 1.194781 | TCTCTGACTTGGGGAGGTGC | 61.195 | 60.000 | 0.00 | 0.00 | 0.00 | 5.01 |
561 | 998 | 1.167155 | AGATCGATGACGTAGCCGCT | 61.167 | 55.000 | 0.54 | 0.00 | 40.69 | 5.52 |
570 | 1007 | 3.315749 | ACTTCTTACCGGAGATCGATGAC | 59.684 | 47.826 | 9.46 | 0.00 | 42.43 | 3.06 |
633 | 1070 | 7.235812 | ACTTATCTATACCAACTCCAAGATCCC | 59.764 | 40.741 | 0.00 | 0.00 | 0.00 | 3.85 |
640 | 1077 | 6.326583 | CAGGGAACTTATCTATACCAACTCCA | 59.673 | 42.308 | 0.00 | 0.00 | 40.21 | 3.86 |
645 | 1082 | 7.743116 | TTGACAGGGAACTTATCTATACCAA | 57.257 | 36.000 | 0.00 | 0.00 | 40.21 | 3.67 |
656 | 1102 | 2.736670 | ACAGCTTTGACAGGGAACTT | 57.263 | 45.000 | 0.00 | 0.00 | 40.21 | 2.66 |
657 | 1103 | 2.576615 | GAACAGCTTTGACAGGGAACT | 58.423 | 47.619 | 0.00 | 0.00 | 46.44 | 3.01 |
664 | 1110 | 1.933181 | CAGTGACGAACAGCTTTGACA | 59.067 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
673 | 1119 | 4.491676 | GAACTTATAGGCAGTGACGAACA | 58.508 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
676 | 1122 | 3.093814 | TGGAACTTATAGGCAGTGACGA | 58.906 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
678 | 1124 | 3.187700 | CGTGGAACTTATAGGCAGTGAC | 58.812 | 50.000 | 0.00 | 0.00 | 31.75 | 3.67 |
681 | 1127 | 2.185387 | ACCGTGGAACTTATAGGCAGT | 58.815 | 47.619 | 0.00 | 0.00 | 31.75 | 4.40 |
697 | 1143 | 2.300152 | ACATGAGATGAGACACAACCGT | 59.700 | 45.455 | 0.00 | 0.00 | 0.00 | 4.83 |
734 | 1180 | 2.676342 | GCTAACAACGGACGAATTCCAT | 59.324 | 45.455 | 0.00 | 0.00 | 46.29 | 3.41 |
806 | 1261 | 3.724508 | ATCAAGACAGTATCTCCGCTG | 57.275 | 47.619 | 0.00 | 0.00 | 36.27 | 5.18 |
807 | 1262 | 5.772672 | AGATAATCAAGACAGTATCTCCGCT | 59.227 | 40.000 | 0.00 | 0.00 | 36.27 | 5.52 |
808 | 1263 | 6.019779 | AGATAATCAAGACAGTATCTCCGC | 57.980 | 41.667 | 0.00 | 0.00 | 36.27 | 5.54 |
816 | 1271 | 9.717942 | GCTATCCATAAAGATAATCAAGACAGT | 57.282 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
817 | 1272 | 9.716531 | TGCTATCCATAAAGATAATCAAGACAG | 57.283 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
862 | 1319 | 7.903145 | TCTTACTGGTACAAAGAGCTAATCAA | 58.097 | 34.615 | 0.00 | 0.00 | 38.70 | 2.57 |
869 | 1326 | 7.380065 | CGAATAGATCTTACTGGTACAAAGAGC | 59.620 | 40.741 | 0.00 | 1.27 | 40.59 | 4.09 |
872 | 1329 | 6.978659 | TGCGAATAGATCTTACTGGTACAAAG | 59.021 | 38.462 | 0.00 | 0.00 | 38.70 | 2.77 |
874 | 1331 | 6.127563 | TGTGCGAATAGATCTTACTGGTACAA | 60.128 | 38.462 | 0.00 | 0.00 | 38.70 | 2.41 |
876 | 1333 | 5.828747 | TGTGCGAATAGATCTTACTGGTAC | 58.171 | 41.667 | 0.00 | 0.00 | 0.00 | 3.34 |
985 | 1445 | 5.506730 | TTTCCCATGTTGTATGTACCTGA | 57.493 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
986 | 1446 | 5.943416 | TCTTTTCCCATGTTGTATGTACCTG | 59.057 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1131 | 1591 | 5.338632 | TCAAGGAGATACTTAAGTGGACCA | 58.661 | 41.667 | 18.56 | 0.00 | 0.00 | 4.02 |
1284 | 1744 | 7.552687 | TGTTCTATATTAGCCTCAAAACCACTG | 59.447 | 37.037 | 0.00 | 0.00 | 0.00 | 3.66 |
1425 | 1968 | 6.093495 | ACACGGATAATAAACACCAGAATGTG | 59.907 | 38.462 | 0.00 | 0.00 | 42.05 | 3.21 |
1429 | 1972 | 7.172868 | TCTACACGGATAATAAACACCAGAA | 57.827 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1437 | 1980 | 7.097192 | GCTCATCCATCTACACGGATAATAAA | 58.903 | 38.462 | 0.00 | 0.00 | 40.12 | 1.40 |
1536 | 2079 | 7.004086 | TGTTCCCTTCTTCATCACAACTTATT | 58.996 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
1589 | 2140 | 5.836024 | AAAGAGTAGGACCATTGTACCAA | 57.164 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
1694 | 2248 | 8.855110 | TGTGAACACATAACATAAAAAGGACAT | 58.145 | 29.630 | 3.39 | 0.00 | 36.21 | 3.06 |
1777 | 2331 | 5.471556 | TCTGGTACGTCCTCAAACAATAA | 57.528 | 39.130 | 0.00 | 0.00 | 37.07 | 1.40 |
1786 | 2340 | 2.496470 | AGGAAACATCTGGTACGTCCTC | 59.504 | 50.000 | 0.00 | 0.00 | 32.67 | 3.71 |
1791 | 2345 | 3.594603 | AGACAGGAAACATCTGGTACG | 57.405 | 47.619 | 0.00 | 0.00 | 36.62 | 3.67 |
1807 | 2361 | 7.719193 | TCTCCTTCAATTTTTGTGACATAGACA | 59.281 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
1808 | 2362 | 8.099364 | TCTCCTTCAATTTTTGTGACATAGAC | 57.901 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
1875 | 2429 | 5.065731 | GCCTCCAGTGAACAGAAAATATCAG | 59.934 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1961 | 2515 | 3.192466 | AGGTAACATCGTCGCATTTACC | 58.808 | 45.455 | 15.50 | 15.50 | 41.35 | 2.85 |
2026 | 2588 | 5.221541 | GCTATGAAGTATGGTAAGACAGGCT | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 4.58 |
2027 | 2589 | 4.991687 | GCTATGAAGTATGGTAAGACAGGC | 59.008 | 45.833 | 0.00 | 0.00 | 0.00 | 4.85 |
2029 | 2591 | 5.694006 | GCAGCTATGAAGTATGGTAAGACAG | 59.306 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2044 | 2606 | 5.234972 | CAGATGTAAACGATTGCAGCTATGA | 59.765 | 40.000 | 13.32 | 0.00 | 44.43 | 2.15 |
2281 | 4395 | 5.030874 | ACTCAAGCTGCACGTTTATTTAC | 57.969 | 39.130 | 1.02 | 0.00 | 0.00 | 2.01 |
2414 | 4834 | 3.114606 | TCCAGGCTGGATGTCTATTTGA | 58.885 | 45.455 | 32.01 | 5.54 | 42.67 | 2.69 |
2431 | 4851 | 4.742417 | CGAGGATAATACTGCATCTCCAG | 58.258 | 47.826 | 0.00 | 0.00 | 38.78 | 3.86 |
2459 | 4879 | 1.821216 | TCCTTCAAACCGAATGAGCC | 58.179 | 50.000 | 0.00 | 0.00 | 31.69 | 4.70 |
2460 | 4880 | 3.565516 | GTTTCCTTCAAACCGAATGAGC | 58.434 | 45.455 | 0.00 | 0.00 | 38.86 | 4.26 |
2472 | 4892 | 2.967201 | TCCTACGTTCTGGTTTCCTTCA | 59.033 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
2473 | 4893 | 3.672767 | TCCTACGTTCTGGTTTCCTTC | 57.327 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
2474 | 4894 | 4.635699 | ATTCCTACGTTCTGGTTTCCTT | 57.364 | 40.909 | 0.00 | 0.00 | 0.00 | 3.36 |
2476 | 4896 | 4.874396 | CCTAATTCCTACGTTCTGGTTTCC | 59.126 | 45.833 | 0.00 | 0.00 | 0.00 | 3.13 |
2477 | 4897 | 5.727434 | TCCTAATTCCTACGTTCTGGTTTC | 58.273 | 41.667 | 0.00 | 0.00 | 0.00 | 2.78 |
2478 | 4898 | 5.247792 | ACTCCTAATTCCTACGTTCTGGTTT | 59.752 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2479 | 4899 | 4.776308 | ACTCCTAATTCCTACGTTCTGGTT | 59.224 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
2481 | 4901 | 5.593502 | ACTACTCCTAATTCCTACGTTCTGG | 59.406 | 44.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2482 | 4902 | 6.696441 | ACTACTCCTAATTCCTACGTTCTG | 57.304 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
2483 | 4903 | 9.723601 | CTATACTACTCCTAATTCCTACGTTCT | 57.276 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
2484 | 4904 | 8.945057 | CCTATACTACTCCTAATTCCTACGTTC | 58.055 | 40.741 | 0.00 | 0.00 | 0.00 | 3.95 |
2485 | 4905 | 8.664079 | TCCTATACTACTCCTAATTCCTACGTT | 58.336 | 37.037 | 0.00 | 0.00 | 0.00 | 3.99 |
2486 | 4906 | 8.212259 | TCCTATACTACTCCTAATTCCTACGT | 57.788 | 38.462 | 0.00 | 0.00 | 0.00 | 3.57 |
2487 | 4907 | 9.683870 | ATTCCTATACTACTCCTAATTCCTACG | 57.316 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
2503 | 4923 | 9.386122 | AGTGTCATCCTATCAAATTCCTATACT | 57.614 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
2506 | 4926 | 7.446625 | GCAAGTGTCATCCTATCAAATTCCTAT | 59.553 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2507 | 4927 | 6.767902 | GCAAGTGTCATCCTATCAAATTCCTA | 59.232 | 38.462 | 0.00 | 0.00 | 0.00 | 2.94 |
2508 | 4928 | 5.591877 | GCAAGTGTCATCCTATCAAATTCCT | 59.408 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2509 | 4929 | 5.221126 | GGCAAGTGTCATCCTATCAAATTCC | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2510 | 4930 | 5.357878 | TGGCAAGTGTCATCCTATCAAATTC | 59.642 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2511 | 4931 | 5.263599 | TGGCAAGTGTCATCCTATCAAATT | 58.736 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
2512 | 4932 | 4.858850 | TGGCAAGTGTCATCCTATCAAAT | 58.141 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
2513 | 4933 | 4.299586 | TGGCAAGTGTCATCCTATCAAA | 57.700 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
2514 | 4934 | 3.998913 | TGGCAAGTGTCATCCTATCAA | 57.001 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
2522 | 4942 | 4.574674 | TTCTTAGGATGGCAAGTGTCAT | 57.425 | 40.909 | 0.00 | 0.00 | 44.05 | 3.06 |
2523 | 4943 | 4.365514 | TTTCTTAGGATGGCAAGTGTCA | 57.634 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
2524 | 4944 | 5.415701 | TCAATTTCTTAGGATGGCAAGTGTC | 59.584 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2525 | 4945 | 5.183904 | GTCAATTTCTTAGGATGGCAAGTGT | 59.816 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
2526 | 4946 | 5.416952 | AGTCAATTTCTTAGGATGGCAAGTG | 59.583 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2527 | 4947 | 5.574188 | AGTCAATTTCTTAGGATGGCAAGT | 58.426 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
2528 | 4948 | 6.327934 | CAAGTCAATTTCTTAGGATGGCAAG | 58.672 | 40.000 | 0.00 | 0.00 | 0.00 | 4.01 |
2529 | 4949 | 5.336690 | GCAAGTCAATTTCTTAGGATGGCAA | 60.337 | 40.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2530 | 4950 | 4.158394 | GCAAGTCAATTTCTTAGGATGGCA | 59.842 | 41.667 | 0.00 | 0.00 | 0.00 | 4.92 |
2531 | 4951 | 4.676546 | GCAAGTCAATTTCTTAGGATGGC | 58.323 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
2532 | 4952 | 4.913376 | CGCAAGTCAATTTCTTAGGATGG | 58.087 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
2549 | 4969 | 3.308595 | TTTGCATATAGGAACGACGCAAG | 59.691 | 43.478 | 0.00 | 0.00 | 38.90 | 4.01 |
2550 | 4970 | 2.588027 | TGCATATAGGAACGACGCAA | 57.412 | 45.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2551 | 4971 | 2.588027 | TTGCATATAGGAACGACGCA | 57.412 | 45.000 | 0.00 | 0.00 | 0.00 | 5.24 |
2552 | 4972 | 3.936902 | TTTTGCATATAGGAACGACGC | 57.063 | 42.857 | 0.00 | 0.00 | 0.00 | 5.19 |
2553 | 4973 | 5.651172 | TCATTTTGCATATAGGAACGACG | 57.349 | 39.130 | 0.00 | 0.00 | 0.00 | 5.12 |
2554 | 4974 | 5.237344 | AGCTCATTTTGCATATAGGAACGAC | 59.763 | 40.000 | 0.00 | 0.00 | 0.00 | 4.34 |
2555 | 4975 | 5.368145 | AGCTCATTTTGCATATAGGAACGA | 58.632 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
2556 | 4976 | 5.679734 | AGCTCATTTTGCATATAGGAACG | 57.320 | 39.130 | 0.00 | 0.00 | 0.00 | 3.95 |
2557 | 4977 | 7.483307 | TCAAAGCTCATTTTGCATATAGGAAC | 58.517 | 34.615 | 0.00 | 0.00 | 37.83 | 3.62 |
2558 | 4978 | 7.340232 | ACTCAAAGCTCATTTTGCATATAGGAA | 59.660 | 33.333 | 0.00 | 0.00 | 37.83 | 3.36 |
2559 | 4979 | 6.830324 | ACTCAAAGCTCATTTTGCATATAGGA | 59.170 | 34.615 | 0.00 | 0.00 | 37.83 | 2.94 |
2560 | 4980 | 6.916387 | CACTCAAAGCTCATTTTGCATATAGG | 59.084 | 38.462 | 0.00 | 0.00 | 37.83 | 2.57 |
2561 | 4981 | 6.916387 | CCACTCAAAGCTCATTTTGCATATAG | 59.084 | 38.462 | 0.00 | 0.00 | 37.83 | 1.31 |
2562 | 4982 | 6.602803 | TCCACTCAAAGCTCATTTTGCATATA | 59.397 | 34.615 | 0.00 | 0.00 | 37.83 | 0.86 |
2563 | 4983 | 5.419788 | TCCACTCAAAGCTCATTTTGCATAT | 59.580 | 36.000 | 0.00 | 0.00 | 37.83 | 1.78 |
2564 | 4984 | 4.766373 | TCCACTCAAAGCTCATTTTGCATA | 59.234 | 37.500 | 0.00 | 0.00 | 37.83 | 3.14 |
2565 | 4985 | 3.575256 | TCCACTCAAAGCTCATTTTGCAT | 59.425 | 39.130 | 0.00 | 0.00 | 37.83 | 3.96 |
2566 | 4986 | 2.957680 | TCCACTCAAAGCTCATTTTGCA | 59.042 | 40.909 | 0.00 | 0.00 | 37.83 | 4.08 |
2567 | 4987 | 3.648339 | TCCACTCAAAGCTCATTTTGC | 57.352 | 42.857 | 0.00 | 0.00 | 37.83 | 3.68 |
2568 | 4988 | 4.921515 | CACATCCACTCAAAGCTCATTTTG | 59.078 | 41.667 | 0.00 | 0.00 | 38.97 | 2.44 |
2569 | 4989 | 4.586001 | ACACATCCACTCAAAGCTCATTTT | 59.414 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
2570 | 4990 | 4.147321 | ACACATCCACTCAAAGCTCATTT | 58.853 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
2571 | 4991 | 3.759581 | ACACATCCACTCAAAGCTCATT | 58.240 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
2572 | 4992 | 3.430042 | ACACATCCACTCAAAGCTCAT | 57.570 | 42.857 | 0.00 | 0.00 | 0.00 | 2.90 |
2573 | 4993 | 2.936919 | ACACATCCACTCAAAGCTCA | 57.063 | 45.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2574 | 4994 | 3.931578 | ACTACACATCCACTCAAAGCTC | 58.068 | 45.455 | 0.00 | 0.00 | 0.00 | 4.09 |
2575 | 4995 | 4.357918 | AACTACACATCCACTCAAAGCT | 57.642 | 40.909 | 0.00 | 0.00 | 0.00 | 3.74 |
2576 | 4996 | 5.239525 | AGAAAACTACACATCCACTCAAAGC | 59.760 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2577 | 4997 | 6.073003 | GGAGAAAACTACACATCCACTCAAAG | 60.073 | 42.308 | 0.00 | 0.00 | 0.00 | 2.77 |
2578 | 4998 | 5.763204 | GGAGAAAACTACACATCCACTCAAA | 59.237 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2579 | 4999 | 5.163248 | TGGAGAAAACTACACATCCACTCAA | 60.163 | 40.000 | 0.00 | 0.00 | 32.04 | 3.02 |
2580 | 5000 | 4.346709 | TGGAGAAAACTACACATCCACTCA | 59.653 | 41.667 | 0.00 | 0.00 | 32.04 | 3.41 |
2581 | 5001 | 4.894784 | TGGAGAAAACTACACATCCACTC | 58.105 | 43.478 | 0.00 | 0.00 | 32.04 | 3.51 |
2582 | 5002 | 4.974645 | TGGAGAAAACTACACATCCACT | 57.025 | 40.909 | 0.00 | 0.00 | 32.04 | 4.00 |
2583 | 5003 | 6.385649 | TTTTGGAGAAAACTACACATCCAC | 57.614 | 37.500 | 0.00 | 0.00 | 36.60 | 4.02 |
2584 | 5004 | 6.378564 | TGTTTTTGGAGAAAACTACACATCCA | 59.621 | 34.615 | 13.51 | 0.00 | 39.97 | 3.41 |
2585 | 5005 | 6.695713 | GTGTTTTTGGAGAAAACTACACATCC | 59.304 | 38.462 | 13.51 | 0.00 | 40.24 | 3.51 |
2586 | 5006 | 7.254852 | TGTGTTTTTGGAGAAAACTACACATC | 58.745 | 34.615 | 13.51 | 0.00 | 42.65 | 3.06 |
2587 | 5007 | 7.164230 | TGTGTTTTTGGAGAAAACTACACAT | 57.836 | 32.000 | 13.51 | 0.00 | 42.65 | 3.21 |
2588 | 5008 | 6.349777 | CCTGTGTTTTTGGAGAAAACTACACA | 60.350 | 38.462 | 13.51 | 13.33 | 43.89 | 3.72 |
2589 | 5009 | 6.033966 | CCTGTGTTTTTGGAGAAAACTACAC | 58.966 | 40.000 | 13.51 | 9.49 | 40.57 | 2.90 |
2590 | 5010 | 5.946972 | TCCTGTGTTTTTGGAGAAAACTACA | 59.053 | 36.000 | 13.51 | 13.52 | 39.97 | 2.74 |
2591 | 5011 | 6.445357 | TCCTGTGTTTTTGGAGAAAACTAC | 57.555 | 37.500 | 13.51 | 10.74 | 39.97 | 2.73 |
2592 | 5012 | 7.469537 | TTTCCTGTGTTTTTGGAGAAAACTA | 57.530 | 32.000 | 13.51 | 4.66 | 39.97 | 2.24 |
2593 | 5013 | 5.993748 | TTCCTGTGTTTTTGGAGAAAACT | 57.006 | 34.783 | 13.51 | 0.00 | 39.97 | 2.66 |
2594 | 5014 | 8.710835 | TTATTTCCTGTGTTTTTGGAGAAAAC | 57.289 | 30.769 | 7.28 | 7.28 | 39.78 | 2.43 |
2595 | 5015 | 9.898152 | ATTTATTTCCTGTGTTTTTGGAGAAAA | 57.102 | 25.926 | 0.00 | 0.00 | 0.00 | 2.29 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.