Multiple sequence alignment - TraesCS2A01G483400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G483400 chr2A 100.000 5815 0 0 1 5815 719301790 719307604 0.000000e+00 10739
1 TraesCS2A01G483400 chr2A 80.892 1256 214 19 3558 4798 719319609 719320853 0.000000e+00 966
2 TraesCS2A01G483400 chr2A 75.892 1261 263 21 3547 4797 719403786 719405015 1.790000e-169 606
3 TraesCS2A01G483400 chr2A 82.975 605 99 4 5214 5815 194180502 194179899 1.430000e-150 544
4 TraesCS2A01G483400 chr2A 83.636 550 86 4 5214 5760 16778556 16778008 1.120000e-141 514
5 TraesCS2A01G483400 chr2A 88.722 399 30 7 996 1391 719473863 719474249 1.900000e-129 473
6 TraesCS2A01G483400 chr2A 92.615 325 24 0 1067 1391 719319223 719319547 8.820000e-128 468
7 TraesCS2A01G483400 chr2A 92.121 330 26 0 1066 1395 719467971 719468300 3.170000e-127 466
8 TraesCS2A01G483400 chr2D 88.795 2490 215 27 3334 5809 585107084 585109523 0.000000e+00 2994
9 TraesCS2A01G483400 chr2D 89.116 1323 72 32 648 1936 585102279 585103563 0.000000e+00 1580
10 TraesCS2A01G483400 chr2D 80.499 1282 225 16 3558 4829 585115466 585116732 0.000000e+00 959
11 TraesCS2A01G483400 chr2D 76.209 1261 247 28 3547 4793 585345200 585346421 8.280000e-173 617
12 TraesCS2A01G483400 chr2D 91.900 321 26 0 1071 1391 585382747 585383067 3.200000e-122 449
13 TraesCS2A01G483400 chr2D 90.741 324 30 0 1067 1390 585114649 585114972 3.220000e-117 433
14 TraesCS2A01G483400 chr2D 87.952 166 16 4 2714 2877 476697540 476697703 5.950000e-45 193
15 TraesCS2A01G483400 chr2D 93.750 112 5 1 2900 3011 585105364 585105473 3.600000e-37 167
16 TraesCS2A01G483400 chr2B 92.422 1689 106 10 3387 5067 705727078 705728752 0.000000e+00 2390
17 TraesCS2A01G483400 chr2B 85.449 1347 81 54 644 1936 705724235 705725520 0.000000e+00 1295
18 TraesCS2A01G483400 chr2B 91.529 543 42 4 21 559 156588910 156589452 0.000000e+00 745
19 TraesCS2A01G483400 chr2B 75.734 1261 265 19 3547 4797 706116687 706117916 3.880000e-166 595
20 TraesCS2A01G483400 chr2B 75.734 1261 265 19 3547 4797 706119818 706121047 3.880000e-166 595
21 TraesCS2A01G483400 chr2B 86.164 477 24 14 1939 2389 705725563 705726023 1.470000e-130 477
22 TraesCS2A01G483400 chr2B 89.666 329 26 2 1071 1391 706290020 706290348 4.190000e-111 412
23 TraesCS2A01G483400 chr2B 89.157 166 10 2 2900 3065 705726606 705726763 3.550000e-47 200
24 TraesCS2A01G483400 chr5B 91.529 543 41 5 21 559 67024721 67025262 0.000000e+00 743
25 TraesCS2A01G483400 chr1B 91.328 542 44 3 21 559 644278301 644278842 0.000000e+00 737
26 TraesCS2A01G483400 chr1B 91.176 544 43 4 21 559 269218802 269218259 0.000000e+00 734
27 TraesCS2A01G483400 chr1B 91.160 543 44 4 21 559 390272581 390273123 0.000000e+00 734
28 TraesCS2A01G483400 chr6B 91.312 541 43 4 23 559 21063508 21064048 0.000000e+00 736
29 TraesCS2A01G483400 chr6B 83.980 593 94 1 5224 5815 408698333 408698925 8.460000e-158 568
30 TraesCS2A01G483400 chr4D 91.312 541 43 3 24 560 315601199 315600659 0.000000e+00 736
31 TraesCS2A01G483400 chr7B 91.160 543 44 4 21 559 74093215 74092673 0.000000e+00 734
32 TraesCS2A01G483400 chr7B 90.305 557 49 4 21 573 211371238 211370683 0.000000e+00 725
33 TraesCS2A01G483400 chr7B 86.813 182 17 7 2707 2882 678029166 678029346 4.600000e-46 196
34 TraesCS2A01G483400 chr5D 84.486 593 90 2 5224 5815 539677505 539676914 8.400000e-163 584
35 TraesCS2A01G483400 chr6A 84.524 588 85 3 5224 5810 611089363 611088781 1.410000e-160 577
36 TraesCS2A01G483400 chr6A 93.103 145 9 1 2713 2856 1672293 1672149 1.640000e-50 211
37 TraesCS2A01G483400 chr6A 91.892 148 10 2 2711 2856 494463093 494463240 7.640000e-49 206
38 TraesCS2A01G483400 chr5A 82.799 593 96 6 5225 5815 433936231 433935643 5.160000e-145 525
39 TraesCS2A01G483400 chr5A 88.580 324 37 0 1071 1394 703195027 703195350 1.520000e-105 394
40 TraesCS2A01G483400 chr5A 93.007 143 9 1 2715 2856 71460386 71460244 2.120000e-49 207
41 TraesCS2A01G483400 chr5A 93.007 143 9 1 2714 2856 101083273 101083414 2.120000e-49 207
42 TraesCS2A01G483400 chr1A 81.879 596 101 6 5224 5815 12419208 12419800 4.050000e-136 496
43 TraesCS2A01G483400 chr1A 93.662 142 7 2 2715 2856 390701119 390700980 1.640000e-50 211
44 TraesCS2A01G483400 chr7A 82.230 574 99 3 5224 5795 685459471 685458899 5.240000e-135 492
45 TraesCS2A01G483400 chr6D 81.313 594 102 7 5215 5803 409334012 409334601 1.900000e-129 473
46 TraesCS2A01G483400 chr3D 88.398 181 19 2 2713 2892 481712970 481712791 3.530000e-52 217
47 TraesCS2A01G483400 chr4A 88.554 166 12 6 2715 2873 13582713 13582548 1.650000e-45 195
48 TraesCS2A01G483400 chr3B 84.685 111 17 0 1284 1394 800828241 800828351 1.710000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G483400 chr2A 719301790 719307604 5814 False 10739.000000 10739 100.000000 1 5815 1 chr2A.!!$F1 5814
1 TraesCS2A01G483400 chr2A 719319223 719320853 1630 False 717.000000 966 86.753500 1067 4798 2 chr2A.!!$F5 3731
2 TraesCS2A01G483400 chr2A 719403786 719405015 1229 False 606.000000 606 75.892000 3547 4797 1 chr2A.!!$F2 1250
3 TraesCS2A01G483400 chr2A 194179899 194180502 603 True 544.000000 544 82.975000 5214 5815 1 chr2A.!!$R2 601
4 TraesCS2A01G483400 chr2A 16778008 16778556 548 True 514.000000 514 83.636000 5214 5760 1 chr2A.!!$R1 546
5 TraesCS2A01G483400 chr2D 585102279 585109523 7244 False 1580.333333 2994 90.553667 648 5809 3 chr2D.!!$F4 5161
6 TraesCS2A01G483400 chr2D 585114649 585116732 2083 False 696.000000 959 85.620000 1067 4829 2 chr2D.!!$F5 3762
7 TraesCS2A01G483400 chr2D 585345200 585346421 1221 False 617.000000 617 76.209000 3547 4793 1 chr2D.!!$F2 1246
8 TraesCS2A01G483400 chr2B 705724235 705728752 4517 False 1090.500000 2390 88.298000 644 5067 4 chr2B.!!$F3 4423
9 TraesCS2A01G483400 chr2B 156588910 156589452 542 False 745.000000 745 91.529000 21 559 1 chr2B.!!$F1 538
10 TraesCS2A01G483400 chr2B 706116687 706121047 4360 False 595.000000 595 75.734000 3547 4797 2 chr2B.!!$F4 1250
11 TraesCS2A01G483400 chr5B 67024721 67025262 541 False 743.000000 743 91.529000 21 559 1 chr5B.!!$F1 538
12 TraesCS2A01G483400 chr1B 644278301 644278842 541 False 737.000000 737 91.328000 21 559 1 chr1B.!!$F2 538
13 TraesCS2A01G483400 chr1B 269218259 269218802 543 True 734.000000 734 91.176000 21 559 1 chr1B.!!$R1 538
14 TraesCS2A01G483400 chr1B 390272581 390273123 542 False 734.000000 734 91.160000 21 559 1 chr1B.!!$F1 538
15 TraesCS2A01G483400 chr6B 21063508 21064048 540 False 736.000000 736 91.312000 23 559 1 chr6B.!!$F1 536
16 TraesCS2A01G483400 chr6B 408698333 408698925 592 False 568.000000 568 83.980000 5224 5815 1 chr6B.!!$F2 591
17 TraesCS2A01G483400 chr4D 315600659 315601199 540 True 736.000000 736 91.312000 24 560 1 chr4D.!!$R1 536
18 TraesCS2A01G483400 chr7B 74092673 74093215 542 True 734.000000 734 91.160000 21 559 1 chr7B.!!$R1 538
19 TraesCS2A01G483400 chr7B 211370683 211371238 555 True 725.000000 725 90.305000 21 573 1 chr7B.!!$R2 552
20 TraesCS2A01G483400 chr5D 539676914 539677505 591 True 584.000000 584 84.486000 5224 5815 1 chr5D.!!$R1 591
21 TraesCS2A01G483400 chr6A 611088781 611089363 582 True 577.000000 577 84.524000 5224 5810 1 chr6A.!!$R2 586
22 TraesCS2A01G483400 chr5A 433935643 433936231 588 True 525.000000 525 82.799000 5225 5815 1 chr5A.!!$R2 590
23 TraesCS2A01G483400 chr1A 12419208 12419800 592 False 496.000000 496 81.879000 5224 5815 1 chr1A.!!$F1 591
24 TraesCS2A01G483400 chr7A 685458899 685459471 572 True 492.000000 492 82.230000 5224 5795 1 chr7A.!!$R1 571
25 TraesCS2A01G483400 chr6D 409334012 409334601 589 False 473.000000 473 81.313000 5215 5803 1 chr6D.!!$F1 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 155 0.179026 GAATAAAGGTCTCCCCGCCC 60.179 60.0 0.00 0.00 38.74 6.13 F
640 644 0.327259 AAAGAGCTCCTCATGCTGCA 59.673 50.0 10.93 4.13 41.30 4.41 F
2032 2537 0.172578 TCAGTACTGAATGCCGACCG 59.827 55.0 23.24 0.00 36.53 4.79 F
2587 4433 0.108992 CTGTGGTGTTGATGCATGGC 60.109 55.0 2.46 0.00 0.00 4.40 F
3011 4899 0.246635 GAGCCGTGCCAGTTCTTCTA 59.753 55.0 0.00 0.00 0.00 2.10 F
3220 5406 0.393537 CCCCTGCTTTGGCTGAGTAG 60.394 60.0 0.00 0.00 39.31 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1477 1611 0.109272 TTAGGCTGACGACGAAGCAG 60.109 55.0 22.28 16.77 41.36 4.24 R
2568 4414 0.108992 GCCATGCATCAACACCACAG 60.109 55.0 0.00 0.00 0.00 3.66 R
3092 5196 0.039618 TTCTGGTGCAATTCCCTCCC 59.960 55.0 0.00 0.00 0.00 4.30 R
3540 6763 0.463654 TGCAAAGAGCCAACGACACT 60.464 50.0 0.00 0.00 44.83 3.55 R
4168 7403 0.689055 AGAGCAGGTTGATGAGCACA 59.311 50.0 0.00 0.00 0.00 4.57 R
5218 11637 0.104120 TTGAGGCGTGACCGGATATG 59.896 55.0 9.46 2.59 46.52 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.374402 CACAGGTCCGCCTCGTCT 61.374 66.667 0.00 0.00 44.97 4.18
19 20 2.600769 ACAGGTCCGCCTCGTCTT 60.601 61.111 0.00 0.00 44.97 3.01
90 92 6.561945 TTTTTCAATCGTGTTAGTGTTTGC 57.438 33.333 0.00 0.00 0.00 3.68
96 98 1.595794 CGTGTTAGTGTTTGCGTCCTT 59.404 47.619 0.00 0.00 0.00 3.36
100 102 2.060326 TAGTGTTTGCGTCCTTCTCG 57.940 50.000 0.00 0.00 0.00 4.04
102 104 0.599204 GTGTTTGCGTCCTTCTCGGA 60.599 55.000 0.00 0.00 40.30 4.55
106 108 0.677288 TTGCGTCCTTCTCGGAAAGA 59.323 50.000 0.01 0.00 45.32 2.52
153 155 0.179026 GAATAAAGGTCTCCCCGCCC 60.179 60.000 0.00 0.00 38.74 6.13
305 307 5.048224 TGGATCCTTCCGATCTACGTTATTC 60.048 44.000 14.23 0.00 45.90 1.75
317 319 1.134907 ACGTTATTCTTCATCGGCGGT 60.135 47.619 7.21 0.00 0.00 5.68
322 324 0.609151 TTCTTCATCGGCGGTGGTTA 59.391 50.000 21.45 5.36 0.00 2.85
338 340 1.626825 GGTTACTGTTCTGGGGTGCTA 59.373 52.381 0.00 0.00 0.00 3.49
367 369 1.505425 GGCCTTAACACGACGACTTT 58.495 50.000 0.00 0.00 0.00 2.66
372 374 2.995466 TAACACGACGACTTTCCGAT 57.005 45.000 0.00 0.00 0.00 4.18
458 460 0.718343 CTCGCTTCAGTGCTTGTAGC 59.282 55.000 9.30 9.30 44.19 3.58
465 467 3.488090 GTGCTTGTAGCCGTCGCC 61.488 66.667 0.00 0.00 41.51 5.54
473 475 1.454295 TAGCCGTCGCCAGGTGATA 60.454 57.895 5.84 0.00 34.57 2.15
475 477 1.956170 GCCGTCGCCAGGTGATATG 60.956 63.158 5.84 0.00 0.00 1.78
476 478 1.441729 CCGTCGCCAGGTGATATGT 59.558 57.895 5.84 0.00 0.00 2.29
488 490 3.008813 AGGTGATATGTGGATCTGGATGC 59.991 47.826 0.00 0.00 0.00 3.91
591 595 5.502153 AAAACACCGTAATAGCAAACACA 57.498 34.783 0.00 0.00 0.00 3.72
592 596 4.742438 AACACCGTAATAGCAAACACAG 57.258 40.909 0.00 0.00 0.00 3.66
593 597 3.071479 ACACCGTAATAGCAAACACAGG 58.929 45.455 0.00 0.00 0.00 4.00
594 598 3.071479 CACCGTAATAGCAAACACAGGT 58.929 45.455 0.00 0.00 0.00 4.00
595 599 3.071479 ACCGTAATAGCAAACACAGGTG 58.929 45.455 0.00 0.00 0.00 4.00
596 600 2.159572 CCGTAATAGCAAACACAGGTGC 60.160 50.000 0.00 0.00 41.22 5.01
597 601 2.159572 CGTAATAGCAAACACAGGTGCC 60.160 50.000 0.00 0.00 41.88 5.01
598 602 2.292828 AATAGCAAACACAGGTGCCT 57.707 45.000 0.00 0.00 41.88 4.75
599 603 2.292828 ATAGCAAACACAGGTGCCTT 57.707 45.000 0.00 0.00 41.88 4.35
600 604 2.065899 TAGCAAACACAGGTGCCTTT 57.934 45.000 0.00 0.00 41.88 3.11
601 605 2.065899 AGCAAACACAGGTGCCTTTA 57.934 45.000 0.00 0.00 41.88 1.85
602 606 2.597455 AGCAAACACAGGTGCCTTTAT 58.403 42.857 0.00 0.00 41.88 1.40
603 607 2.558359 AGCAAACACAGGTGCCTTTATC 59.442 45.455 0.00 0.00 41.88 1.75
604 608 2.558359 GCAAACACAGGTGCCTTTATCT 59.442 45.455 0.00 0.00 34.58 1.98
605 609 3.756434 GCAAACACAGGTGCCTTTATCTA 59.244 43.478 0.00 0.00 34.58 1.98
606 610 4.399303 GCAAACACAGGTGCCTTTATCTAT 59.601 41.667 0.00 0.00 34.58 1.98
607 611 5.588648 GCAAACACAGGTGCCTTTATCTATA 59.411 40.000 0.00 0.00 34.58 1.31
608 612 6.094881 GCAAACACAGGTGCCTTTATCTATAA 59.905 38.462 0.00 0.00 34.58 0.98
609 613 7.362574 GCAAACACAGGTGCCTTTATCTATAAA 60.363 37.037 0.00 0.00 34.58 1.40
610 614 8.686334 CAAACACAGGTGCCTTTATCTATAAAT 58.314 33.333 0.00 0.00 32.36 1.40
611 615 9.914834 AAACACAGGTGCCTTTATCTATAAATA 57.085 29.630 0.00 0.00 32.36 1.40
613 617 9.726438 ACACAGGTGCCTTTATCTATAAATATC 57.274 33.333 0.00 0.00 32.36 1.63
614 618 9.950496 CACAGGTGCCTTTATCTATAAATATCT 57.050 33.333 0.00 0.00 32.36 1.98
620 624 9.791801 TGCCTTTATCTATAAATATCTTGTGCA 57.208 29.630 0.00 0.00 32.36 4.57
628 632 9.618890 TCTATAAATATCTTGTGCAAAAGAGCT 57.381 29.630 23.27 11.20 39.47 4.09
629 633 9.875675 CTATAAATATCTTGTGCAAAAGAGCTC 57.124 33.333 23.27 5.27 39.47 4.09
630 634 5.573337 AATATCTTGTGCAAAAGAGCTCC 57.427 39.130 23.27 0.00 39.47 4.70
631 635 2.645838 TCTTGTGCAAAAGAGCTCCT 57.354 45.000 15.62 0.00 32.42 3.69
632 636 2.498167 TCTTGTGCAAAAGAGCTCCTC 58.502 47.619 15.62 0.00 32.42 3.71
633 637 2.158769 TCTTGTGCAAAAGAGCTCCTCA 60.159 45.455 15.62 0.00 32.42 3.86
634 638 2.574006 TGTGCAAAAGAGCTCCTCAT 57.426 45.000 10.93 0.00 32.06 2.90
635 639 2.156917 TGTGCAAAAGAGCTCCTCATG 58.843 47.619 10.93 6.08 32.06 3.07
636 640 1.135460 GTGCAAAAGAGCTCCTCATGC 60.135 52.381 18.95 18.95 37.36 4.06
637 641 1.271762 TGCAAAAGAGCTCCTCATGCT 60.272 47.619 23.36 0.00 44.24 3.79
638 642 1.132643 GCAAAAGAGCTCCTCATGCTG 59.867 52.381 10.93 0.00 41.30 4.41
639 643 1.132643 CAAAAGAGCTCCTCATGCTGC 59.867 52.381 10.93 0.00 41.30 5.25
640 644 0.327259 AAAGAGCTCCTCATGCTGCA 59.673 50.000 10.93 4.13 41.30 4.41
641 645 0.392729 AAGAGCTCCTCATGCTGCAC 60.393 55.000 10.93 0.00 41.30 4.57
642 646 1.078637 GAGCTCCTCATGCTGCACA 60.079 57.895 3.57 0.00 41.30 4.57
643 647 0.464013 GAGCTCCTCATGCTGCACAT 60.464 55.000 3.57 0.00 41.30 3.21
644 648 0.464013 AGCTCCTCATGCTGCACATC 60.464 55.000 3.57 0.00 39.56 3.06
645 649 0.464013 GCTCCTCATGCTGCACATCT 60.464 55.000 3.57 0.00 36.64 2.90
646 650 1.584175 CTCCTCATGCTGCACATCTC 58.416 55.000 3.57 0.00 36.64 2.75
667 671 8.933807 CATCTCATATTTGCTATTTGATCGTCT 58.066 33.333 0.00 0.00 0.00 4.18
675 679 3.971871 GCTATTTGATCGTCTCGAGTCAG 59.028 47.826 13.13 5.32 39.91 3.51
678 682 2.902065 TGATCGTCTCGAGTCAGTTG 57.098 50.000 13.13 0.00 39.91 3.16
694 698 2.161012 CAGTTGACGAATGCAGAGCAAT 59.839 45.455 0.00 0.00 43.62 3.56
695 699 3.371898 CAGTTGACGAATGCAGAGCAATA 59.628 43.478 0.00 0.00 43.62 1.90
696 700 4.034858 CAGTTGACGAATGCAGAGCAATAT 59.965 41.667 0.00 0.00 43.62 1.28
707 711 6.812879 TGCAGAGCAATATTAATCATGAGG 57.187 37.500 0.09 0.00 34.76 3.86
735 746 4.375405 GCGTGTAGATCATCAAGTAATGCG 60.375 45.833 0.00 0.00 0.00 4.73
736 747 4.148871 CGTGTAGATCATCAAGTAATGCGG 59.851 45.833 0.00 0.00 0.00 5.69
737 748 4.058124 TGTAGATCATCAAGTAATGCGGC 58.942 43.478 0.00 0.00 0.00 6.53
738 749 2.138320 AGATCATCAAGTAATGCGGCG 58.862 47.619 0.51 0.51 0.00 6.46
739 750 1.195448 GATCATCAAGTAATGCGGCGG 59.805 52.381 9.78 0.00 0.00 6.13
740 751 1.009675 CATCAAGTAATGCGGCGGC 60.010 57.895 9.78 9.68 40.52 6.53
741 752 1.153168 ATCAAGTAATGCGGCGGCT 60.153 52.632 17.76 0.22 40.82 5.52
742 753 0.748005 ATCAAGTAATGCGGCGGCTT 60.748 50.000 17.76 8.37 40.82 4.35
743 754 0.958382 TCAAGTAATGCGGCGGCTTT 60.958 50.000 17.76 18.43 40.82 3.51
744 755 0.523335 CAAGTAATGCGGCGGCTTTC 60.523 55.000 18.61 11.59 40.82 2.62
776 787 3.056213 AGCAGGGTGGTGAAAATGG 57.944 52.632 0.00 0.00 0.00 3.16
898 909 1.143969 ACTACAAATAGCGCGCGGTC 61.144 55.000 39.46 19.43 30.75 4.79
1083 1127 2.653448 CGGCTGAGCATCGACGAG 60.653 66.667 6.82 0.00 41.41 4.18
1421 1491 2.124693 GCTCTCTCTGCTACCGCCT 61.125 63.158 0.00 0.00 34.43 5.52
1477 1611 4.997395 CCTAACATGTGCCTACCATATGAC 59.003 45.833 3.65 0.00 43.44 3.06
1501 1919 2.907910 TCGTCGTCAGCCTAACTAAC 57.092 50.000 0.00 0.00 0.00 2.34
1502 1920 2.430465 TCGTCGTCAGCCTAACTAACT 58.570 47.619 0.00 0.00 0.00 2.24
1506 1924 1.202268 CGTCAGCCTAACTAACTCCCG 60.202 57.143 0.00 0.00 0.00 5.14
1507 1925 0.822164 TCAGCCTAACTAACTCCCGC 59.178 55.000 0.00 0.00 0.00 6.13
1508 1926 0.179081 CAGCCTAACTAACTCCCGCC 60.179 60.000 0.00 0.00 0.00 6.13
1549 1967 3.381590 TCTCTGATGTCCCGTTGATAGTG 59.618 47.826 0.00 0.00 0.00 2.74
1554 1972 3.313012 TGTCCCGTTGATAGTGTCTTG 57.687 47.619 0.00 0.00 0.00 3.02
1555 1973 2.000447 GTCCCGTTGATAGTGTCTTGC 59.000 52.381 0.00 0.00 0.00 4.01
1556 1974 0.999406 CCCGTTGATAGTGTCTTGCG 59.001 55.000 0.00 0.00 0.00 4.85
1558 1976 2.066262 CCGTTGATAGTGTCTTGCGTT 58.934 47.619 0.00 0.00 0.00 4.84
1559 1977 2.092211 CCGTTGATAGTGTCTTGCGTTC 59.908 50.000 0.00 0.00 0.00 3.95
1560 1978 2.092211 CGTTGATAGTGTCTTGCGTTCC 59.908 50.000 0.00 0.00 0.00 3.62
1561 1979 3.064207 GTTGATAGTGTCTTGCGTTCCA 58.936 45.455 0.00 0.00 0.00 3.53
1562 1980 2.959516 TGATAGTGTCTTGCGTTCCAG 58.040 47.619 0.00 0.00 0.00 3.86
1563 1981 1.661112 GATAGTGTCTTGCGTTCCAGC 59.339 52.381 0.00 0.00 37.71 4.85
1564 1982 0.391228 TAGTGTCTTGCGTTCCAGCA 59.609 50.000 0.00 0.00 46.54 4.41
1577 1995 3.194861 GTTCCAGCATACGCATCAAGTA 58.805 45.455 0.00 0.00 42.27 2.24
1628 2060 4.828296 CATGCCCAGCCCCAGACC 62.828 72.222 0.00 0.00 0.00 3.85
1737 2175 0.759346 ATCGAATTTCCTCCCTCCCG 59.241 55.000 0.00 0.00 0.00 5.14
1799 2249 0.758734 TGCCTGCCGAATAGCTGTAT 59.241 50.000 0.00 0.00 0.00 2.29
1800 2250 1.140852 TGCCTGCCGAATAGCTGTATT 59.859 47.619 0.00 0.00 0.00 1.89
1801 2251 1.801178 GCCTGCCGAATAGCTGTATTC 59.199 52.381 0.00 0.00 40.85 1.75
1873 2335 1.336887 GCGTCACTGCTTGAGTAGGAA 60.337 52.381 1.29 0.00 33.71 3.36
1875 2337 3.390135 CGTCACTGCTTGAGTAGGAAAA 58.610 45.455 1.29 0.00 33.71 2.29
1876 2338 3.184581 CGTCACTGCTTGAGTAGGAAAAC 59.815 47.826 1.29 0.00 33.71 2.43
1879 2341 4.130118 CACTGCTTGAGTAGGAAAACTGT 58.870 43.478 1.29 0.00 31.73 3.55
1880 2342 4.576463 CACTGCTTGAGTAGGAAAACTGTT 59.424 41.667 1.29 0.00 31.73 3.16
1881 2343 4.576463 ACTGCTTGAGTAGGAAAACTGTTG 59.424 41.667 0.00 0.00 30.86 3.33
1882 2344 4.523083 TGCTTGAGTAGGAAAACTGTTGT 58.477 39.130 0.00 0.00 0.00 3.32
1883 2345 5.676552 TGCTTGAGTAGGAAAACTGTTGTA 58.323 37.500 0.00 0.00 0.00 2.41
1884 2346 5.526111 TGCTTGAGTAGGAAAACTGTTGTAC 59.474 40.000 0.00 0.00 0.00 2.90
1899 2361 6.812998 ACTGTTGTACTAGTTTACTTCAGCA 58.187 36.000 0.00 0.00 32.18 4.41
1900 2362 6.924060 ACTGTTGTACTAGTTTACTTCAGCAG 59.076 38.462 0.00 10.75 38.15 4.24
1901 2363 5.694910 TGTTGTACTAGTTTACTTCAGCAGC 59.305 40.000 0.00 0.00 0.00 5.25
1902 2364 4.817517 TGTACTAGTTTACTTCAGCAGCC 58.182 43.478 0.00 0.00 0.00 4.85
1903 2365 4.527038 TGTACTAGTTTACTTCAGCAGCCT 59.473 41.667 0.00 0.00 0.00 4.58
1904 2366 3.931578 ACTAGTTTACTTCAGCAGCCTG 58.068 45.455 0.00 0.00 40.54 4.85
1923 2385 3.076621 CTGTTTTGACTCCTGCTGCATA 58.923 45.455 1.31 0.00 0.00 3.14
1936 2398 5.819379 TCCTGCTGCATATTTTTCTACTGAG 59.181 40.000 1.31 0.00 0.00 3.35
1982 2487 3.045518 TGGTACAAGCTCGACCTCA 57.954 52.632 11.67 0.00 34.13 3.86
1983 2488 1.557099 TGGTACAAGCTCGACCTCAT 58.443 50.000 11.67 0.00 34.13 2.90
1984 2489 1.204704 TGGTACAAGCTCGACCTCATG 59.795 52.381 11.67 0.00 34.13 3.07
1985 2490 1.281899 GTACAAGCTCGACCTCATGC 58.718 55.000 0.00 0.00 0.00 4.06
1986 2491 0.894835 TACAAGCTCGACCTCATGCA 59.105 50.000 0.00 0.00 0.00 3.96
1987 2492 0.251354 ACAAGCTCGACCTCATGCAT 59.749 50.000 0.00 0.00 0.00 3.96
1988 2493 0.656259 CAAGCTCGACCTCATGCATG 59.344 55.000 21.07 21.07 0.00 4.06
1989 2494 1.094073 AAGCTCGACCTCATGCATGC 61.094 55.000 22.25 11.82 0.00 4.06
1990 2495 1.816679 GCTCGACCTCATGCATGCA 60.817 57.895 25.04 25.04 0.00 3.96
1991 2496 1.164662 GCTCGACCTCATGCATGCAT 61.165 55.000 27.46 27.46 37.08 3.96
1992 2497 0.866427 CTCGACCTCATGCATGCATC 59.134 55.000 30.07 18.29 33.90 3.91
1993 2498 0.877213 TCGACCTCATGCATGCATCG 60.877 55.000 30.07 28.14 33.90 3.84
2025 2530 4.108336 CGGTCTGACATCAGTACTGAATG 58.892 47.826 28.43 25.01 43.58 2.67
2032 2537 0.172578 TCAGTACTGAATGCCGACCG 59.827 55.000 23.24 0.00 36.53 4.79
2113 2641 1.138859 CATCGCCTAATGGGTCAGTCA 59.861 52.381 0.00 0.00 37.43 3.41
2114 2642 0.824109 TCGCCTAATGGGTCAGTCAG 59.176 55.000 0.00 0.00 37.43 3.51
2115 2643 0.537188 CGCCTAATGGGTCAGTCAGT 59.463 55.000 0.00 0.00 37.43 3.41
2116 2644 1.471676 CGCCTAATGGGTCAGTCAGTC 60.472 57.143 0.00 0.00 37.43 3.51
2134 2662 2.687425 AGTCTCGGTGATGTGATCTCAG 59.313 50.000 3.58 0.00 0.00 3.35
2164 2714 6.276832 TGCAGACTAATTAAGTACTCCGTT 57.723 37.500 0.00 0.00 39.07 4.44
2226 2776 7.625280 TCTTCTACTAGTAGTACCAGGGAGTAA 59.375 40.741 25.58 10.00 34.84 2.24
2239 2789 2.654896 AGGGAGTAATTTTCCAAGCCCT 59.345 45.455 9.97 0.00 39.76 5.19
2254 2804 2.905075 AGCCCTTTTTGTCTTTTGTGC 58.095 42.857 0.00 0.00 0.00 4.57
2261 2811 2.977772 TTGTCTTTTGTGCTTTGGGG 57.022 45.000 0.00 0.00 0.00 4.96
2290 2840 1.213678 TGATGCTTGGGATCTCTTGGG 59.786 52.381 0.00 0.00 0.00 4.12
2333 2883 0.473755 ACTGAACCAGTGCATGTGGA 59.526 50.000 21.61 2.22 43.63 4.02
2341 2898 1.741706 CAGTGCATGTGGATGAGAACC 59.258 52.381 0.00 0.00 0.00 3.62
2354 2911 3.430042 TGAGAACCGTGGTCTAGTAGT 57.570 47.619 0.00 0.00 0.00 2.73
2355 2912 4.558226 TGAGAACCGTGGTCTAGTAGTA 57.442 45.455 0.00 0.00 0.00 1.82
2356 2913 5.108187 TGAGAACCGTGGTCTAGTAGTAT 57.892 43.478 0.00 0.00 0.00 2.12
2363 2920 7.321717 ACCGTGGTCTAGTAGTATATCCTTA 57.678 40.000 0.00 0.00 0.00 2.69
2395 3225 3.473625 ACTGTACAAGCCTAACCAACAC 58.526 45.455 0.00 0.00 0.00 3.32
2425 3291 2.876550 GGCCCGTCCACTGAATTATTAC 59.123 50.000 0.00 0.00 34.01 1.89
2430 3296 5.646360 CCCGTCCACTGAATTATTACAGTTT 59.354 40.000 0.00 0.00 43.52 2.66
2431 3297 6.819649 CCCGTCCACTGAATTATTACAGTTTA 59.180 38.462 0.00 0.00 43.52 2.01
2432 3298 7.334921 CCCGTCCACTGAATTATTACAGTTTAA 59.665 37.037 0.00 0.00 43.52 1.52
2456 3322 3.968649 AGTTGCAGCAATACAACAACAG 58.031 40.909 11.96 0.00 46.79 3.16
2464 3330 6.640499 GCAGCAATACAACAACAGTGAAATTA 59.360 34.615 0.00 0.00 0.00 1.40
2466 3332 8.479280 CAGCAATACAACAACAGTGAAATTAAC 58.521 33.333 0.00 0.00 0.00 2.01
2481 3347 9.014297 AGTGAAATTAACATACTTTCCCTCAAG 57.986 33.333 0.00 0.00 0.00 3.02
2488 3354 4.396166 ACATACTTTCCCTCAAGAAATGCG 59.604 41.667 0.00 0.00 35.30 4.73
2508 3389 2.470628 CGCGTAGATTGAGCATCTCTTG 59.529 50.000 0.00 0.00 41.80 3.02
2519 3400 3.316253 GCATCTCTTGCGCTAGAAAAG 57.684 47.619 21.54 14.40 42.54 2.27
2530 3411 1.970917 CTAGAAAAGCCACTGCCGCG 61.971 60.000 0.00 0.00 38.69 6.46
2531 3412 2.725203 TAGAAAAGCCACTGCCGCGT 62.725 55.000 4.92 0.00 38.69 6.01
2532 3413 3.595108 GAAAAGCCACTGCCGCGTC 62.595 63.158 4.92 0.00 38.69 5.19
2547 4393 2.533266 CGCGTCGTTAAGGTTCCTTAT 58.467 47.619 11.45 0.00 0.00 1.73
2550 4396 4.179298 GCGTCGTTAAGGTTCCTTATTCT 58.821 43.478 11.45 0.00 0.00 2.40
2557 4403 3.528597 AGGTTCCTTATTCTGCTCGAC 57.471 47.619 0.00 0.00 0.00 4.20
2568 4414 0.992802 CTGCTCGACGCCTTTTAGTC 59.007 55.000 4.73 0.00 38.05 2.59
2572 4418 1.986378 CTCGACGCCTTTTAGTCTGTG 59.014 52.381 0.00 0.00 35.38 3.66
2580 4426 3.821033 GCCTTTTAGTCTGTGGTGTTGAT 59.179 43.478 0.00 0.00 0.00 2.57
2587 4433 0.108992 CTGTGGTGTTGATGCATGGC 60.109 55.000 2.46 0.00 0.00 4.40
2634 4492 8.963725 TCGGTTATTAGAGAACAGTGAGAATTA 58.036 33.333 0.00 0.00 0.00 1.40
2635 4493 9.751542 CGGTTATTAGAGAACAGTGAGAATTAT 57.248 33.333 0.00 0.00 0.00 1.28
2642 4500 8.367660 AGAGAACAGTGAGAATTATACTTCCA 57.632 34.615 0.00 0.00 0.00 3.53
2643 4501 8.986991 AGAGAACAGTGAGAATTATACTTCCAT 58.013 33.333 0.00 0.00 0.00 3.41
2648 4506 9.698309 ACAGTGAGAATTATACTTCCATATTCG 57.302 33.333 0.00 0.00 0.00 3.34
2649 4507 9.698309 CAGTGAGAATTATACTTCCATATTCGT 57.302 33.333 0.00 0.00 0.00 3.85
2650 4508 9.915629 AGTGAGAATTATACTTCCATATTCGTC 57.084 33.333 0.00 0.00 0.00 4.20
2651 4509 9.915629 GTGAGAATTATACTTCCATATTCGTCT 57.084 33.333 0.00 0.00 0.00 4.18
2678 4536 3.712881 GCGTTGACAGTGACCGGC 61.713 66.667 0.00 0.00 0.00 6.13
2711 4569 5.108187 TGCTTCTTCAGGCTCTCAATAAT 57.892 39.130 0.00 0.00 0.00 1.28
2712 4570 6.239217 TGCTTCTTCAGGCTCTCAATAATA 57.761 37.500 0.00 0.00 0.00 0.98
2713 4571 6.653020 TGCTTCTTCAGGCTCTCAATAATAA 58.347 36.000 0.00 0.00 0.00 1.40
2714 4572 6.540189 TGCTTCTTCAGGCTCTCAATAATAAC 59.460 38.462 0.00 0.00 0.00 1.89
2715 4573 6.540189 GCTTCTTCAGGCTCTCAATAATAACA 59.460 38.462 0.00 0.00 0.00 2.41
2716 4574 7.254727 GCTTCTTCAGGCTCTCAATAATAACAG 60.255 40.741 0.00 0.00 0.00 3.16
2717 4575 7.187824 TCTTCAGGCTCTCAATAATAACAGT 57.812 36.000 0.00 0.00 0.00 3.55
2718 4576 7.624549 TCTTCAGGCTCTCAATAATAACAGTT 58.375 34.615 0.00 0.00 0.00 3.16
2719 4577 8.103305 TCTTCAGGCTCTCAATAATAACAGTTT 58.897 33.333 0.00 0.00 0.00 2.66
2720 4578 7.615582 TCAGGCTCTCAATAATAACAGTTTG 57.384 36.000 0.00 0.00 0.00 2.93
2721 4579 7.168219 TCAGGCTCTCAATAATAACAGTTTGT 58.832 34.615 0.00 0.00 0.00 2.83
2722 4580 7.334421 TCAGGCTCTCAATAATAACAGTTTGTC 59.666 37.037 0.00 0.00 0.00 3.18
2723 4581 7.335422 CAGGCTCTCAATAATAACAGTTTGTCT 59.665 37.037 0.00 0.00 0.00 3.41
2724 4582 8.540388 AGGCTCTCAATAATAACAGTTTGTCTA 58.460 33.333 0.00 0.00 0.00 2.59
2725 4583 9.162764 GGCTCTCAATAATAACAGTTTGTCTAA 57.837 33.333 0.00 0.00 0.00 2.10
2766 4624 8.561738 TTTTTAAGGATGTCACATCTAACCTC 57.438 34.615 17.46 0.00 0.00 3.85
2767 4625 4.762289 AAGGATGTCACATCTAACCTCC 57.238 45.455 17.46 0.18 32.24 4.30
2768 4626 3.041946 AGGATGTCACATCTAACCTCCC 58.958 50.000 17.46 0.00 32.42 4.30
2769 4627 2.771943 GGATGTCACATCTAACCTCCCA 59.228 50.000 17.46 0.00 0.00 4.37
2770 4628 3.432326 GGATGTCACATCTAACCTCCCAC 60.432 52.174 17.46 0.00 0.00 4.61
2771 4629 2.615391 TGTCACATCTAACCTCCCACA 58.385 47.619 0.00 0.00 0.00 4.17
2772 4630 2.976185 TGTCACATCTAACCTCCCACAA 59.024 45.455 0.00 0.00 0.00 3.33
2773 4631 3.392947 TGTCACATCTAACCTCCCACAAA 59.607 43.478 0.00 0.00 0.00 2.83
2774 4632 4.042809 TGTCACATCTAACCTCCCACAAAT 59.957 41.667 0.00 0.00 0.00 2.32
2775 4633 5.249622 TGTCACATCTAACCTCCCACAAATA 59.750 40.000 0.00 0.00 0.00 1.40
2776 4634 6.069673 TGTCACATCTAACCTCCCACAAATAT 60.070 38.462 0.00 0.00 0.00 1.28
2777 4635 7.126573 TGTCACATCTAACCTCCCACAAATATA 59.873 37.037 0.00 0.00 0.00 0.86
2778 4636 8.157476 GTCACATCTAACCTCCCACAAATATAT 58.843 37.037 0.00 0.00 0.00 0.86
2779 4637 9.387397 TCACATCTAACCTCCCACAAATATATA 57.613 33.333 0.00 0.00 0.00 0.86
2783 4641 9.686683 ATCTAACCTCCCACAAATATATAATGC 57.313 33.333 0.00 0.00 0.00 3.56
2784 4642 8.664992 TCTAACCTCCCACAAATATATAATGCA 58.335 33.333 0.00 0.00 0.00 3.96
2785 4643 9.466497 CTAACCTCCCACAAATATATAATGCAT 57.534 33.333 0.00 0.00 0.00 3.96
2786 4644 8.725606 AACCTCCCACAAATATATAATGCATT 57.274 30.769 17.56 17.56 0.00 3.56
2787 4645 9.821240 AACCTCCCACAAATATATAATGCATTA 57.179 29.630 20.95 20.95 0.00 1.90
2788 4646 9.821240 ACCTCCCACAAATATATAATGCATTAA 57.179 29.630 22.37 12.35 0.00 1.40
2843 4701 8.918202 ATAGACCACAAATAAAGTGAAAGTCA 57.082 30.769 0.00 0.00 39.30 3.41
2844 4702 7.264373 AGACCACAAATAAAGTGAAAGTCAG 57.736 36.000 0.00 0.00 39.30 3.51
2845 4703 6.828785 AGACCACAAATAAAGTGAAAGTCAGT 59.171 34.615 0.00 0.00 39.30 3.41
2846 4704 7.339466 AGACCACAAATAAAGTGAAAGTCAGTT 59.661 33.333 0.00 0.00 41.46 3.16
2856 4714 8.682936 AAAGTGAAAGTCAGTTTAGATGTGAT 57.317 30.769 8.88 0.00 45.30 3.06
2857 4715 7.664082 AGTGAAAGTCAGTTTAGATGTGATG 57.336 36.000 0.00 0.00 0.00 3.07
2858 4716 7.220030 AGTGAAAGTCAGTTTAGATGTGATGT 58.780 34.615 0.00 0.00 0.00 3.06
2859 4717 7.172190 AGTGAAAGTCAGTTTAGATGTGATGTG 59.828 37.037 0.00 0.00 0.00 3.21
2860 4718 6.992123 TGAAAGTCAGTTTAGATGTGATGTGT 59.008 34.615 0.00 0.00 0.00 3.72
2861 4719 7.171508 TGAAAGTCAGTTTAGATGTGATGTGTC 59.828 37.037 0.00 0.00 0.00 3.67
2862 4720 5.482908 AGTCAGTTTAGATGTGATGTGTCC 58.517 41.667 0.00 0.00 0.00 4.02
2863 4721 5.247110 AGTCAGTTTAGATGTGATGTGTCCT 59.753 40.000 0.00 0.00 0.00 3.85
2864 4722 6.437477 AGTCAGTTTAGATGTGATGTGTCCTA 59.563 38.462 0.00 0.00 0.00 2.94
2865 4723 6.754209 GTCAGTTTAGATGTGATGTGTCCTAG 59.246 42.308 0.00 0.00 0.00 3.02
2866 4724 6.663523 TCAGTTTAGATGTGATGTGTCCTAGA 59.336 38.462 0.00 0.00 0.00 2.43
2867 4725 6.977502 CAGTTTAGATGTGATGTGTCCTAGAG 59.022 42.308 0.00 0.00 0.00 2.43
2868 4726 6.892456 AGTTTAGATGTGATGTGTCCTAGAGA 59.108 38.462 0.00 0.00 0.00 3.10
2869 4727 6.951062 TTAGATGTGATGTGTCCTAGAGAG 57.049 41.667 0.00 0.00 0.00 3.20
2870 4728 5.122707 AGATGTGATGTGTCCTAGAGAGA 57.877 43.478 0.00 0.00 0.00 3.10
2871 4729 4.887071 AGATGTGATGTGTCCTAGAGAGAC 59.113 45.833 0.00 0.00 39.23 3.36
2872 4730 3.357203 TGTGATGTGTCCTAGAGAGACC 58.643 50.000 0.00 0.00 37.98 3.85
2873 4731 3.010696 TGTGATGTGTCCTAGAGAGACCT 59.989 47.826 0.00 0.00 37.98 3.85
2874 4732 3.630312 GTGATGTGTCCTAGAGAGACCTC 59.370 52.174 0.00 0.00 37.98 3.85
2875 4733 3.267031 TGATGTGTCCTAGAGAGACCTCA 59.733 47.826 10.19 10.19 39.85 3.86
2876 4734 3.808834 TGTGTCCTAGAGAGACCTCAA 57.191 47.619 0.00 0.00 41.87 3.02
2877 4735 4.323569 TGTGTCCTAGAGAGACCTCAAT 57.676 45.455 0.00 0.00 41.87 2.57
2878 4736 5.452341 TGTGTCCTAGAGAGACCTCAATA 57.548 43.478 0.00 0.00 41.87 1.90
2879 4737 5.827756 TGTGTCCTAGAGAGACCTCAATAA 58.172 41.667 0.00 0.00 41.87 1.40
2880 4738 6.436027 TGTGTCCTAGAGAGACCTCAATAAT 58.564 40.000 0.00 0.00 41.87 1.28
2881 4739 7.583625 TGTGTCCTAGAGAGACCTCAATAATA 58.416 38.462 0.00 0.00 41.87 0.98
2882 4740 8.059461 TGTGTCCTAGAGAGACCTCAATAATAA 58.941 37.037 0.00 0.00 41.87 1.40
2883 4741 8.573035 GTGTCCTAGAGAGACCTCAATAATAAG 58.427 40.741 0.00 0.00 41.87 1.73
2891 4749 4.726825 AGACCTCAATAATAAGCCCTCCAA 59.273 41.667 0.00 0.00 0.00 3.53
2974 4862 3.457234 CAGATGTGCCGTAGATTTAGCA 58.543 45.455 0.00 0.00 0.00 3.49
3011 4899 0.246635 GAGCCGTGCCAGTTCTTCTA 59.753 55.000 0.00 0.00 0.00 2.10
3024 4912 1.464734 TCTTCTAGGCTGTCAGTCGG 58.535 55.000 0.00 0.00 0.00 4.79
3025 4913 1.004394 TCTTCTAGGCTGTCAGTCGGA 59.996 52.381 0.00 0.52 0.00 4.55
3026 4914 2.028130 CTTCTAGGCTGTCAGTCGGAT 58.972 52.381 0.00 0.00 0.00 4.18
3027 4915 1.681538 TCTAGGCTGTCAGTCGGATC 58.318 55.000 0.00 0.00 0.00 3.36
3056 4944 1.373497 CAGGTCATCTATCGCCGGC 60.373 63.158 19.07 19.07 0.00 6.13
3080 5184 0.686769 GGATACGTCTGGTCTGGGGT 60.687 60.000 0.00 0.00 0.00 4.95
3081 5185 1.410648 GGATACGTCTGGTCTGGGGTA 60.411 57.143 0.00 0.00 0.00 3.69
3082 5186 2.595238 GATACGTCTGGTCTGGGGTAT 58.405 52.381 0.00 0.00 0.00 2.73
3084 5188 1.144057 CGTCTGGTCTGGGGTATGC 59.856 63.158 0.00 0.00 0.00 3.14
3085 5189 1.330655 CGTCTGGTCTGGGGTATGCT 61.331 60.000 0.00 0.00 0.00 3.79
3086 5190 0.466124 GTCTGGTCTGGGGTATGCTC 59.534 60.000 0.00 0.00 0.00 4.26
3087 5191 0.691078 TCTGGTCTGGGGTATGCTCC 60.691 60.000 0.00 0.00 35.21 4.70
3088 5192 0.692419 CTGGTCTGGGGTATGCTCCT 60.692 60.000 0.00 0.00 35.83 3.69
3090 5194 1.147153 GTCTGGGGTATGCTCCTGC 59.853 63.158 0.00 0.00 35.83 4.85
3091 5195 1.003442 TCTGGGGTATGCTCCTGCT 59.997 57.895 0.00 0.00 40.48 4.24
3092 5196 1.147824 CTGGGGTATGCTCCTGCTG 59.852 63.158 0.00 0.00 40.48 4.41
3093 5197 2.335092 CTGGGGTATGCTCCTGCTGG 62.335 65.000 0.00 2.58 40.48 4.85
3094 5198 2.512896 GGGTATGCTCCTGCTGGG 59.487 66.667 10.07 1.89 40.48 4.45
3095 5199 2.072487 GGGTATGCTCCTGCTGGGA 61.072 63.158 10.07 4.33 42.77 4.37
3132 5245 7.308589 CCAGAAATATTTCGAGTTTTGGACACT 60.309 37.037 19.76 0.20 41.92 3.55
3133 5246 8.717821 CAGAAATATTTCGAGTTTTGGACACTA 58.282 33.333 19.86 0.00 41.92 2.74
3145 5331 8.283699 AGTTTTGGACACTATAGTAGAGAGTC 57.716 38.462 12.36 12.36 0.00 3.36
3203 5389 3.915437 TCTGCGAACAATTCTTTTCCC 57.085 42.857 0.00 0.00 0.00 3.97
3207 5393 2.926586 GCGAACAATTCTTTTCCCCTGC 60.927 50.000 0.00 0.00 0.00 4.85
3210 5396 4.501400 CGAACAATTCTTTTCCCCTGCTTT 60.501 41.667 0.00 0.00 0.00 3.51
3217 5403 0.540365 TTTCCCCTGCTTTGGCTGAG 60.540 55.000 0.00 0.00 39.31 3.35
3220 5406 0.393537 CCCCTGCTTTGGCTGAGTAG 60.394 60.000 0.00 0.00 39.31 2.57
3221 5407 0.615331 CCCTGCTTTGGCTGAGTAGA 59.385 55.000 7.20 0.00 39.31 2.59
3222 5408 1.677217 CCCTGCTTTGGCTGAGTAGAC 60.677 57.143 7.20 0.00 39.31 2.59
3223 5409 1.277557 CCTGCTTTGGCTGAGTAGACT 59.722 52.381 7.20 0.00 39.31 3.24
3224 5410 2.344950 CTGCTTTGGCTGAGTAGACTG 58.655 52.381 0.91 0.00 39.31 3.51
3225 5411 1.002430 TGCTTTGGCTGAGTAGACTGG 59.998 52.381 0.00 0.00 39.59 4.00
3226 5412 1.002544 GCTTTGGCTGAGTAGACTGGT 59.997 52.381 0.00 0.00 31.21 4.00
3227 5413 2.233922 GCTTTGGCTGAGTAGACTGGTA 59.766 50.000 0.00 0.00 31.21 3.25
3228 5414 3.118592 GCTTTGGCTGAGTAGACTGGTAT 60.119 47.826 0.00 0.00 31.21 2.73
3229 5415 4.099573 GCTTTGGCTGAGTAGACTGGTATA 59.900 45.833 0.00 0.00 31.21 1.47
3230 5416 5.737635 GCTTTGGCTGAGTAGACTGGTATAG 60.738 48.000 0.00 0.00 31.21 1.31
3231 5417 4.521536 TGGCTGAGTAGACTGGTATAGT 57.478 45.455 0.00 0.00 44.02 2.12
3232 5418 4.868268 TGGCTGAGTAGACTGGTATAGTT 58.132 43.478 0.00 0.00 40.53 2.24
3233 5419 4.888239 TGGCTGAGTAGACTGGTATAGTTC 59.112 45.833 0.00 0.00 40.53 3.01
3235 5421 5.221087 GGCTGAGTAGACTGGTATAGTTCAC 60.221 48.000 0.00 0.00 40.53 3.18
3240 5426 8.304596 TGAGTAGACTGGTATAGTTCACAAAAG 58.695 37.037 0.00 0.00 40.53 2.27
3241 5427 8.191534 AGTAGACTGGTATAGTTCACAAAAGT 57.808 34.615 0.00 0.00 40.53 2.66
3244 5430 7.097834 AGACTGGTATAGTTCACAAAAGTAGC 58.902 38.462 0.00 0.00 40.53 3.58
3245 5431 7.005709 ACTGGTATAGTTCACAAAAGTAGCT 57.994 36.000 0.00 0.00 35.67 3.32
3266 5484 3.105959 AGTAATGGGCTGGATTTTGCT 57.894 42.857 0.00 0.00 0.00 3.91
3268 5486 4.808042 AGTAATGGGCTGGATTTTGCTAT 58.192 39.130 0.00 0.00 0.00 2.97
3270 5488 6.006449 AGTAATGGGCTGGATTTTGCTATAG 58.994 40.000 0.00 0.00 0.00 1.31
3271 5489 4.729552 ATGGGCTGGATTTTGCTATAGA 57.270 40.909 3.21 0.00 0.00 1.98
3288 5506 8.574251 TGCTATAGAACAAAATGGTAATGTGT 57.426 30.769 3.21 0.00 0.00 3.72
3314 6520 3.505386 TCCCAAAATCAGGCTTAGCAAA 58.495 40.909 6.53 0.00 0.00 3.68
3319 6525 5.759763 CCAAAATCAGGCTTAGCAAAGTTTT 59.240 36.000 6.53 5.32 34.99 2.43
3375 6597 4.217035 TGGCGTGCCACATGATAC 57.783 55.556 10.06 0.00 41.89 2.24
3377 6599 0.744057 TGGCGTGCCACATGATACTG 60.744 55.000 10.06 0.00 41.89 2.74
3379 6601 1.472552 GGCGTGCCACATGATACTGTA 60.473 52.381 5.89 0.00 35.81 2.74
3380 6602 2.276201 GCGTGCCACATGATACTGTAA 58.724 47.619 0.00 0.00 0.00 2.41
3381 6603 2.030457 GCGTGCCACATGATACTGTAAC 59.970 50.000 0.00 0.00 0.00 2.50
3382 6604 3.258228 CGTGCCACATGATACTGTAACA 58.742 45.455 0.00 0.07 0.00 2.41
3383 6605 3.306973 CGTGCCACATGATACTGTAACAG 59.693 47.826 0.00 0.00 37.52 3.16
3385 6607 4.093408 GTGCCACATGATACTGTAACAGTG 59.907 45.833 0.00 14.61 45.01 3.66
3419 6641 6.355144 CCACTGAACGTCGTTGTTTAATAAAC 59.645 38.462 16.75 8.82 41.73 2.01
3426 6648 7.071414 ACGTCGTTGTTTAATAAACTTTAGCC 58.929 34.615 15.80 1.24 41.90 3.93
3436 6658 8.561738 TTAATAAACTTTAGCCAGGTTCTCTG 57.438 34.615 0.00 0.00 43.00 3.35
3437 6659 4.706842 AAACTTTAGCCAGGTTCTCTGA 57.293 40.909 0.00 0.00 46.18 3.27
3438 6660 3.971245 ACTTTAGCCAGGTTCTCTGAG 57.029 47.619 0.00 0.00 46.18 3.35
3439 6661 2.569404 ACTTTAGCCAGGTTCTCTGAGG 59.431 50.000 4.59 0.00 46.18 3.86
3471 6693 7.934457 AGTGTAGCCATGTCATTCATTTTATC 58.066 34.615 0.00 0.00 34.09 1.75
3505 6727 8.641499 TTATGGTCATTTTTCTGTTGTTTCAC 57.359 30.769 0.00 0.00 0.00 3.18
3507 6729 4.026886 GGTCATTTTTCTGTTGTTTCACGC 60.027 41.667 0.00 0.00 0.00 5.34
3540 6763 3.893326 AGAACACCATGTGATCGATCA 57.107 42.857 23.99 23.99 39.70 2.92
3545 6768 2.862536 CACCATGTGATCGATCAGTGTC 59.137 50.000 27.95 16.44 37.51 3.67
4036 7259 3.279116 CGTATCCCGGACGGCGTA 61.279 66.667 14.74 0.00 36.66 4.42
4070 7293 3.672781 CGATGATGAGGGAGATGATGTCG 60.673 52.174 0.00 0.00 0.00 4.35
4168 7403 4.341783 GCCAGGCTGGTGCTGTCT 62.342 66.667 32.80 0.00 40.46 3.41
4183 7418 2.074576 CTGTCTGTGCTCATCAACCTG 58.925 52.381 0.00 0.00 0.00 4.00
4243 7478 2.495084 GTCAACCTCAAGACCAACCTC 58.505 52.381 0.00 0.00 0.00 3.85
4267 7502 4.719369 AGCGTCGCCGTGAACTCC 62.719 66.667 14.86 0.00 36.15 3.85
4301 7536 3.760035 CCTACCTGCTCACCGCGT 61.760 66.667 4.92 0.00 43.27 6.01
4412 7647 0.806102 CGTCGGTGCCATGAGGTAAG 60.806 60.000 0.00 0.00 37.19 2.34
4415 7650 1.086696 CGGTGCCATGAGGTAAGTTG 58.913 55.000 0.00 0.00 37.19 3.16
4450 7690 3.657625 CAGCGTTCAAATTTACGTGTGTC 59.342 43.478 13.43 0.00 39.80 3.67
4517 7801 1.598130 GGTGAGGATGGTATGCGGC 60.598 63.158 0.00 0.00 0.00 6.53
4830 11245 1.000145 GTAAGAGTAAGGTGCAGCGC 59.000 55.000 10.78 0.00 0.00 5.92
4834 11249 3.127533 GTAAGGTGCAGCGCCCAG 61.128 66.667 22.01 0.00 33.99 4.45
4872 11287 3.247648 ACTGCATCAGTTTTCGTGTGTAC 59.752 43.478 0.00 0.00 42.59 2.90
4916 11331 1.047002 TGGAAAATGTTGCTGGTGGG 58.953 50.000 0.00 0.00 0.00 4.61
4967 11382 9.126151 TGTAGATTTATTTTCTTGTTGTGTGGA 57.874 29.630 0.00 0.00 0.00 4.02
4975 11390 5.554822 TTCTTGTTGTGTGGAGTTTGTAC 57.445 39.130 0.00 0.00 0.00 2.90
5099 11516 3.309675 CGTTCGATCGCCATGGAC 58.690 61.111 18.40 5.97 0.00 4.02
5112 11529 1.427809 CATGGACCTGCTCCCATCTA 58.572 55.000 0.00 0.00 40.95 1.98
5117 11534 1.689273 GACCTGCTCCCATCTAACGAT 59.311 52.381 0.00 0.00 0.00 3.73
5118 11535 1.689273 ACCTGCTCCCATCTAACGATC 59.311 52.381 0.00 0.00 0.00 3.69
5119 11536 1.336332 CCTGCTCCCATCTAACGATCG 60.336 57.143 14.88 14.88 0.00 3.69
5120 11537 1.338337 CTGCTCCCATCTAACGATCGT 59.662 52.381 16.60 16.60 0.00 3.73
5122 11539 2.223735 TGCTCCCATCTAACGATCGTTC 60.224 50.000 34.78 18.24 39.31 3.95
5123 11540 2.223735 GCTCCCATCTAACGATCGTTCA 60.224 50.000 34.78 23.18 39.31 3.18
5124 11541 3.372954 CTCCCATCTAACGATCGTTCAC 58.627 50.000 34.78 0.00 39.31 3.18
5125 11542 2.100252 TCCCATCTAACGATCGTTCACC 59.900 50.000 34.78 0.00 39.31 4.02
5154 11573 2.680352 TCACAGCGAGGGACCTCC 60.680 66.667 12.54 5.87 39.77 4.30
5170 11589 3.651803 CCTCCTATAGGCGTTTCAGAG 57.348 52.381 14.50 3.52 38.97 3.35
5171 11590 2.288518 CCTCCTATAGGCGTTTCAGAGC 60.289 54.545 14.50 0.00 38.97 4.09
5172 11591 2.362397 CTCCTATAGGCGTTTCAGAGCA 59.638 50.000 14.50 0.00 34.44 4.26
5173 11592 2.965831 TCCTATAGGCGTTTCAGAGCAT 59.034 45.455 14.50 0.00 34.44 3.79
5174 11593 3.005897 TCCTATAGGCGTTTCAGAGCATC 59.994 47.826 14.50 0.00 34.44 3.91
5175 11594 5.235575 TCCTATAGGCGTTTCAGAGCATCT 61.236 45.833 14.50 0.00 40.36 2.90
5177 11596 7.254085 TCCTATAGGCGTTTCAGAGCATCTAT 61.254 42.308 14.50 0.00 38.29 1.98
5178 11597 8.017061 TCCTATAGGCGTTTCAGAGCATCTATA 61.017 40.741 14.50 0.00 38.29 1.31
5199 11618 8.677300 TCTATATTTGAACTTGGCAAATCTGAC 58.323 33.333 0.00 0.00 42.95 3.51
5200 11619 4.998671 TTTGAACTTGGCAAATCTGACA 57.001 36.364 0.00 0.00 39.52 3.58
5201 11620 3.988379 TGAACTTGGCAAATCTGACAC 57.012 42.857 0.00 0.00 41.63 3.67
5212 11631 0.687354 ATCTGACACCTCAAACGCCT 59.313 50.000 0.00 0.00 0.00 5.52
5218 11637 3.423154 CCTCAAACGCCTGCGGAC 61.423 66.667 16.63 0.00 44.69 4.79
5219 11638 2.664851 CTCAAACGCCTGCGGACA 60.665 61.111 16.63 0.00 44.69 4.02
5259 11678 1.392589 AATGCAATCCACATCCGGAC 58.607 50.000 6.12 0.00 38.07 4.79
5317 11738 6.813152 ACATGCAACATAGTGATTTTTAAGCC 59.187 34.615 0.00 0.00 0.00 4.35
5344 11767 3.505184 CGGTTACCGTGGCCATGC 61.505 66.667 20.27 5.57 42.73 4.06
5461 11884 2.609747 GACATCTCCCATGCCCTACTA 58.390 52.381 0.00 0.00 0.00 1.82
5502 11925 1.521906 CGTTGGGTGTTGGTCGACA 60.522 57.895 18.91 0.27 0.00 4.35
5529 11952 1.690219 GATGCCGGATCTGTCCTGGT 61.690 60.000 5.05 0.00 42.73 4.00
5530 11953 1.274703 ATGCCGGATCTGTCCTGGTT 61.275 55.000 5.05 0.00 42.73 3.67
5536 11959 0.526524 GATCTGTCCTGGTTCGAGCG 60.527 60.000 0.00 0.00 0.00 5.03
5585 12008 1.996786 GCCCGAACTGATGTGCCATG 61.997 60.000 0.00 0.00 0.00 3.66
5629 12052 4.351938 CTCGCCGACGTCCACCAA 62.352 66.667 10.58 0.00 41.18 3.67
5810 12234 2.034607 CTCTGGCGAGGTAGCTACC 58.965 63.158 32.07 32.07 46.82 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.938539 GATCCACCGAAGACGAGGCG 62.939 65.000 0.00 0.00 42.66 5.52
10 11 1.227002 GATCCACCGAAGACGAGGC 60.227 63.158 0.00 0.00 42.66 4.70
11 12 1.038130 AGGATCCACCGAAGACGAGG 61.038 60.000 15.82 0.00 44.74 4.63
12 13 0.101399 CAGGATCCACCGAAGACGAG 59.899 60.000 15.82 0.00 44.74 4.18
13 14 1.320344 CCAGGATCCACCGAAGACGA 61.320 60.000 15.82 0.00 44.74 4.20
14 15 1.141881 CCAGGATCCACCGAAGACG 59.858 63.158 15.82 0.00 44.74 4.18
15 16 1.153349 GCCAGGATCCACCGAAGAC 60.153 63.158 15.82 0.00 44.74 3.01
16 17 1.198094 TTGCCAGGATCCACCGAAGA 61.198 55.000 15.82 0.00 44.74 2.87
17 18 0.745845 CTTGCCAGGATCCACCGAAG 60.746 60.000 15.82 6.85 44.74 3.79
18 19 1.299648 CTTGCCAGGATCCACCGAA 59.700 57.895 15.82 0.28 44.74 4.30
19 20 2.669133 CCTTGCCAGGATCCACCGA 61.669 63.158 15.82 0.30 44.19 4.69
84 86 1.743391 TCCGAGAAGGACGCAAACA 59.257 52.632 0.00 0.00 45.98 2.83
100 102 2.506438 CCGCCGTCTCGTCTTTCC 60.506 66.667 0.00 0.00 0.00 3.13
174 176 0.179045 GCCCACCAACGATGCTAGAT 60.179 55.000 0.00 0.00 0.00 1.98
305 307 0.108329 AGTAACCACCGCCGATGAAG 60.108 55.000 0.00 0.00 0.00 3.02
317 319 0.109723 GCACCCCAGAACAGTAACCA 59.890 55.000 0.00 0.00 0.00 3.67
322 324 0.977395 GACTAGCACCCCAGAACAGT 59.023 55.000 0.00 0.00 0.00 3.55
372 374 4.573201 GGCACAACTTGTTGTAGTAGACAA 59.427 41.667 17.26 0.00 46.03 3.18
447 449 2.432628 GCGACGGCTACAAGCACT 60.433 61.111 0.00 0.00 44.75 4.40
458 460 0.875908 CACATATCACCTGGCGACGG 60.876 60.000 0.00 0.00 0.00 4.79
465 467 4.576879 CATCCAGATCCACATATCACCTG 58.423 47.826 0.00 0.00 0.00 4.00
473 475 5.687166 AAAAATTGCATCCAGATCCACAT 57.313 34.783 0.00 0.00 0.00 3.21
496 498 3.719924 ACAGTACAACGAACATCCGAAA 58.280 40.909 0.00 0.00 0.00 3.46
499 501 2.668250 TGACAGTACAACGAACATCCG 58.332 47.619 0.00 0.00 0.00 4.18
500 502 4.242475 TCATGACAGTACAACGAACATCC 58.758 43.478 0.00 0.00 0.00 3.51
501 503 6.090763 TCAATCATGACAGTACAACGAACATC 59.909 38.462 0.00 0.00 0.00 3.06
568 572 5.892568 TGTGTTTGCTATTACGGTGTTTTT 58.107 33.333 0.00 0.00 0.00 1.94
569 573 5.502153 TGTGTTTGCTATTACGGTGTTTT 57.498 34.783 0.00 0.00 0.00 2.43
570 574 4.023536 CCTGTGTTTGCTATTACGGTGTTT 60.024 41.667 0.00 0.00 0.00 2.83
571 575 3.500680 CCTGTGTTTGCTATTACGGTGTT 59.499 43.478 0.00 0.00 0.00 3.32
572 576 3.071479 CCTGTGTTTGCTATTACGGTGT 58.929 45.455 0.00 0.00 0.00 4.16
573 577 3.071479 ACCTGTGTTTGCTATTACGGTG 58.929 45.455 0.00 0.00 0.00 4.94
574 578 3.071479 CACCTGTGTTTGCTATTACGGT 58.929 45.455 0.00 0.00 0.00 4.83
575 579 2.159572 GCACCTGTGTTTGCTATTACGG 60.160 50.000 0.00 0.00 35.74 4.02
576 580 2.159572 GGCACCTGTGTTTGCTATTACG 60.160 50.000 0.00 0.00 38.85 3.18
577 581 3.081804 AGGCACCTGTGTTTGCTATTAC 58.918 45.455 0.00 0.00 38.85 1.89
578 582 3.433306 AGGCACCTGTGTTTGCTATTA 57.567 42.857 0.00 0.00 38.85 0.98
579 583 2.292828 AGGCACCTGTGTTTGCTATT 57.707 45.000 0.00 0.00 38.85 1.73
580 584 2.292828 AAGGCACCTGTGTTTGCTAT 57.707 45.000 0.00 0.00 38.85 2.97
581 585 2.065899 AAAGGCACCTGTGTTTGCTA 57.934 45.000 0.00 0.00 38.85 3.49
582 586 2.065899 TAAAGGCACCTGTGTTTGCT 57.934 45.000 0.00 0.00 38.85 3.91
583 587 2.558359 AGATAAAGGCACCTGTGTTTGC 59.442 45.455 0.00 0.00 38.06 3.68
584 588 7.624360 TTATAGATAAAGGCACCTGTGTTTG 57.376 36.000 0.00 0.00 0.00 2.93
585 589 8.823220 ATTTATAGATAAAGGCACCTGTGTTT 57.177 30.769 0.00 0.00 35.88 2.83
587 591 9.726438 GATATTTATAGATAAAGGCACCTGTGT 57.274 33.333 0.00 0.00 35.88 3.72
588 592 9.950496 AGATATTTATAGATAAAGGCACCTGTG 57.050 33.333 0.00 0.00 35.88 3.66
594 598 9.791801 TGCACAAGATATTTATAGATAAAGGCA 57.208 29.630 1.55 0.00 35.88 4.75
602 606 9.618890 AGCTCTTTTGCACAAGATATTTATAGA 57.381 29.630 15.36 0.00 32.21 1.98
603 607 9.875675 GAGCTCTTTTGCACAAGATATTTATAG 57.124 33.333 15.36 3.26 32.21 1.31
604 608 8.840321 GGAGCTCTTTTGCACAAGATATTTATA 58.160 33.333 15.36 0.00 32.21 0.98
605 609 7.559170 AGGAGCTCTTTTGCACAAGATATTTAT 59.441 33.333 15.36 0.00 32.21 1.40
606 610 6.886459 AGGAGCTCTTTTGCACAAGATATTTA 59.114 34.615 15.36 0.00 32.21 1.40
607 611 5.713861 AGGAGCTCTTTTGCACAAGATATTT 59.286 36.000 15.36 2.53 32.21 1.40
608 612 5.259632 AGGAGCTCTTTTGCACAAGATATT 58.740 37.500 15.36 4.82 32.21 1.28
609 613 4.853007 AGGAGCTCTTTTGCACAAGATAT 58.147 39.130 15.36 7.47 32.21 1.63
610 614 4.256920 GAGGAGCTCTTTTGCACAAGATA 58.743 43.478 15.36 0.00 32.21 1.98
611 615 3.080319 GAGGAGCTCTTTTGCACAAGAT 58.920 45.455 15.36 2.13 32.21 2.40
612 616 2.158769 TGAGGAGCTCTTTTGCACAAGA 60.159 45.455 14.64 14.34 34.99 3.02
613 617 2.224606 TGAGGAGCTCTTTTGCACAAG 58.775 47.619 14.64 6.25 34.99 3.16
614 618 2.346766 TGAGGAGCTCTTTTGCACAA 57.653 45.000 14.64 0.00 34.99 3.33
615 619 2.156917 CATGAGGAGCTCTTTTGCACA 58.843 47.619 14.64 0.00 34.99 4.57
616 620 1.135460 GCATGAGGAGCTCTTTTGCAC 60.135 52.381 21.93 3.40 34.41 4.57
617 621 1.171308 GCATGAGGAGCTCTTTTGCA 58.829 50.000 21.93 8.54 34.41 4.08
618 622 1.132643 CAGCATGAGGAGCTCTTTTGC 59.867 52.381 20.29 20.29 41.14 3.68
619 623 1.132643 GCAGCATGAGGAGCTCTTTTG 59.867 52.381 14.64 9.30 41.14 2.44
620 624 1.271762 TGCAGCATGAGGAGCTCTTTT 60.272 47.619 14.64 0.00 41.14 2.27
621 625 0.327259 TGCAGCATGAGGAGCTCTTT 59.673 50.000 14.64 1.93 41.14 2.52
622 626 0.392729 GTGCAGCATGAGGAGCTCTT 60.393 55.000 14.64 5.66 41.14 2.85
623 627 1.221293 GTGCAGCATGAGGAGCTCT 59.779 57.895 14.64 0.00 41.14 4.09
624 628 0.464013 ATGTGCAGCATGAGGAGCTC 60.464 55.000 4.71 4.71 41.14 4.09
625 629 0.464013 GATGTGCAGCATGAGGAGCT 60.464 55.000 0.00 0.00 44.62 4.09
626 630 0.464013 AGATGTGCAGCATGAGGAGC 60.464 55.000 0.00 0.00 39.69 4.70
627 631 1.134491 TGAGATGTGCAGCATGAGGAG 60.134 52.381 0.00 0.00 39.69 3.69
628 632 0.906775 TGAGATGTGCAGCATGAGGA 59.093 50.000 0.00 0.00 39.69 3.71
629 633 1.968704 ATGAGATGTGCAGCATGAGG 58.031 50.000 0.00 0.00 39.69 3.86
630 634 5.452777 CAAATATGAGATGTGCAGCATGAG 58.547 41.667 0.00 0.00 39.69 2.90
631 635 4.261447 GCAAATATGAGATGTGCAGCATGA 60.261 41.667 0.00 0.00 39.69 3.07
632 636 3.981416 GCAAATATGAGATGTGCAGCATG 59.019 43.478 0.00 0.00 38.06 4.06
633 637 3.889538 AGCAAATATGAGATGTGCAGCAT 59.110 39.130 4.90 0.00 41.24 3.79
634 638 3.284617 AGCAAATATGAGATGTGCAGCA 58.715 40.909 4.90 0.00 37.68 4.41
635 639 3.984508 AGCAAATATGAGATGTGCAGC 57.015 42.857 4.90 0.00 37.68 5.25
636 640 7.645402 TCAAATAGCAAATATGAGATGTGCAG 58.355 34.615 4.90 0.00 37.68 4.41
637 641 7.571080 TCAAATAGCAAATATGAGATGTGCA 57.429 32.000 4.90 0.00 37.68 4.57
638 642 7.480855 CGATCAAATAGCAAATATGAGATGTGC 59.519 37.037 0.00 0.00 35.41 4.57
639 643 8.501580 ACGATCAAATAGCAAATATGAGATGTG 58.498 33.333 0.00 0.00 0.00 3.21
640 644 8.613060 ACGATCAAATAGCAAATATGAGATGT 57.387 30.769 0.00 0.00 0.00 3.06
641 645 8.933807 AGACGATCAAATAGCAAATATGAGATG 58.066 33.333 0.00 0.00 0.00 2.90
642 646 9.149225 GAGACGATCAAATAGCAAATATGAGAT 57.851 33.333 0.00 0.00 0.00 2.75
643 647 7.327032 CGAGACGATCAAATAGCAAATATGAGA 59.673 37.037 0.00 0.00 0.00 3.27
644 648 7.327032 TCGAGACGATCAAATAGCAAATATGAG 59.673 37.037 0.00 0.00 0.00 2.90
645 649 7.145323 TCGAGACGATCAAATAGCAAATATGA 58.855 34.615 0.00 0.00 0.00 2.15
646 650 7.115520 ACTCGAGACGATCAAATAGCAAATATG 59.884 37.037 21.68 0.00 34.61 1.78
667 671 1.000717 TGCATTCGTCAACTGACTCGA 60.001 47.619 8.16 0.00 42.66 4.04
675 679 2.907910 ATTGCTCTGCATTCGTCAAC 57.092 45.000 0.00 0.00 38.76 3.18
678 682 6.891624 TGATTAATATTGCTCTGCATTCGTC 58.108 36.000 0.00 0.00 38.76 4.20
681 685 7.968956 CCTCATGATTAATATTGCTCTGCATTC 59.031 37.037 0.00 0.00 38.76 2.67
694 698 2.371841 ACGCCAGCCCTCATGATTAATA 59.628 45.455 0.00 0.00 0.00 0.98
695 699 1.143684 ACGCCAGCCCTCATGATTAAT 59.856 47.619 0.00 0.00 0.00 1.40
696 700 0.546122 ACGCCAGCCCTCATGATTAA 59.454 50.000 0.00 0.00 0.00 1.40
707 711 0.104855 TGATGATCTACACGCCAGCC 59.895 55.000 0.00 0.00 0.00 4.85
735 746 0.317854 GACAAGTTGTGAAAGCCGCC 60.318 55.000 14.57 0.00 0.00 6.13
736 747 0.380378 TGACAAGTTGTGAAAGCCGC 59.620 50.000 14.57 0.00 0.00 6.53
737 748 1.268539 GGTGACAAGTTGTGAAAGCCG 60.269 52.381 14.57 0.00 0.00 5.52
738 749 1.748493 TGGTGACAAGTTGTGAAAGCC 59.252 47.619 14.57 3.36 37.44 4.35
739 750 2.796032 GCTGGTGACAAGTTGTGAAAGC 60.796 50.000 14.57 13.70 42.06 3.51
740 751 2.423185 TGCTGGTGACAAGTTGTGAAAG 59.577 45.455 14.57 7.59 42.06 2.62
741 752 2.423185 CTGCTGGTGACAAGTTGTGAAA 59.577 45.455 14.57 0.00 42.06 2.69
742 753 2.016318 CTGCTGGTGACAAGTTGTGAA 58.984 47.619 14.57 0.00 42.06 3.18
743 754 1.667236 CTGCTGGTGACAAGTTGTGA 58.333 50.000 14.57 0.92 42.06 3.58
744 755 0.664761 CCTGCTGGTGACAAGTTGTG 59.335 55.000 14.57 0.00 42.06 3.33
794 805 6.701400 GCCATTTACAGTTGTTCAACAGAAAT 59.299 34.615 16.31 13.95 0.00 2.17
869 880 2.159379 GCTATTTGTAGTTGTGGGCAGC 60.159 50.000 0.00 0.00 0.00 5.25
949 960 4.699522 GAGCCGCGTGGTCCCTTT 62.700 66.667 17.91 0.00 37.67 3.11
1068 1112 2.959071 GCCTCGTCGATGCTCAGC 60.959 66.667 14.35 0.00 0.00 4.26
1421 1491 4.395959 AGGCAGAATTACGATACCGAAA 57.604 40.909 0.00 0.00 39.50 3.46
1477 1611 0.109272 TTAGGCTGACGACGAAGCAG 60.109 55.000 22.28 16.77 41.36 4.24
1549 1967 0.370273 CGTATGCTGGAACGCAAGAC 59.630 55.000 0.00 0.00 40.56 3.01
1555 1973 1.004610 CTTGATGCGTATGCTGGAACG 60.005 52.381 8.69 0.00 43.34 3.95
1556 1974 2.009774 ACTTGATGCGTATGCTGGAAC 58.990 47.619 8.69 0.00 43.34 3.62
1558 1976 2.167487 TGTACTTGATGCGTATGCTGGA 59.833 45.455 8.69 0.00 43.34 3.86
1559 1977 2.541346 CTGTACTTGATGCGTATGCTGG 59.459 50.000 8.69 0.00 43.34 4.85
1560 1978 3.447742 TCTGTACTTGATGCGTATGCTG 58.552 45.455 8.69 0.00 43.34 4.41
1561 1979 3.711086 CTCTGTACTTGATGCGTATGCT 58.289 45.455 8.69 0.00 43.34 3.79
1562 1980 2.219674 GCTCTGTACTTGATGCGTATGC 59.780 50.000 0.00 0.00 43.20 3.14
1563 1981 2.797156 GGCTCTGTACTTGATGCGTATG 59.203 50.000 0.00 0.00 0.00 2.39
1564 1982 2.695666 AGGCTCTGTACTTGATGCGTAT 59.304 45.455 0.00 0.00 0.00 3.06
1678 2110 2.146073 AAATTGCACTGCTCCACGGC 62.146 55.000 1.98 0.00 0.00 5.68
1691 2129 1.509162 GTCGACACGGCGAAATTGC 60.509 57.895 16.62 0.00 42.55 3.56
1737 2175 2.667137 CTGGCGATAAAGACGGATCTC 58.333 52.381 0.00 0.00 32.34 2.75
1832 2294 1.816679 GCTGCATGCGTCCAGATGA 60.817 57.895 14.09 0.00 0.00 2.92
1862 2324 8.142551 ACTAGTACAACAGTTTTCCTACTCAAG 58.857 37.037 0.00 0.00 0.00 3.02
1873 2335 7.767198 TGCTGAAGTAAACTAGTACAACAGTTT 59.233 33.333 18.39 18.39 44.81 2.66
1875 2337 6.812998 TGCTGAAGTAAACTAGTACAACAGT 58.187 36.000 16.28 0.00 34.69 3.55
1876 2338 6.128795 GCTGCTGAAGTAAACTAGTACAACAG 60.129 42.308 0.00 6.81 35.00 3.16
1879 2341 5.011738 AGGCTGCTGAAGTAAACTAGTACAA 59.988 40.000 0.00 0.00 0.00 2.41
1880 2342 4.527038 AGGCTGCTGAAGTAAACTAGTACA 59.473 41.667 0.00 0.00 0.00 2.90
1881 2343 4.865365 CAGGCTGCTGAAGTAAACTAGTAC 59.135 45.833 0.00 0.00 0.00 2.73
1882 2344 4.527038 ACAGGCTGCTGAAGTAAACTAGTA 59.473 41.667 15.89 0.00 0.00 1.82
1883 2345 3.325135 ACAGGCTGCTGAAGTAAACTAGT 59.675 43.478 15.89 0.00 0.00 2.57
1884 2346 3.931578 ACAGGCTGCTGAAGTAAACTAG 58.068 45.455 15.89 0.00 0.00 2.57
1899 2361 0.475906 AGCAGGAGTCAAAACAGGCT 59.524 50.000 0.00 0.00 0.00 4.58
1900 2362 0.595095 CAGCAGGAGTCAAAACAGGC 59.405 55.000 0.00 0.00 0.00 4.85
1901 2363 0.595095 GCAGCAGGAGTCAAAACAGG 59.405 55.000 0.00 0.00 0.00 4.00
1902 2364 1.311859 TGCAGCAGGAGTCAAAACAG 58.688 50.000 0.00 0.00 0.00 3.16
1903 2365 1.985473 ATGCAGCAGGAGTCAAAACA 58.015 45.000 0.00 0.00 0.00 2.83
1904 2366 4.708726 AATATGCAGCAGGAGTCAAAAC 57.291 40.909 0.00 0.00 0.00 2.43
1923 2385 4.184629 CGCACTAGGCTCAGTAGAAAAAT 58.815 43.478 0.00 0.00 41.67 1.82
1936 2398 4.920927 TGAAAATTAAAAAGCGCACTAGGC 59.079 37.500 11.47 0.00 39.90 3.93
1953 2458 7.415206 GGTCGAGCTTGTACCATTAATGAAAAT 60.415 37.037 17.23 2.34 33.28 1.82
2013 2518 0.172578 CGGTCGGCATTCAGTACTGA 59.827 55.000 21.74 21.74 37.91 3.41
2032 2537 2.668279 CGTGTTTTGCTTCATACTGGCC 60.668 50.000 0.00 0.00 0.00 5.36
2113 2641 2.687425 CTGAGATCACATCACCGAGACT 59.313 50.000 0.00 0.00 0.00 3.24
2114 2642 2.223688 CCTGAGATCACATCACCGAGAC 60.224 54.545 0.00 0.00 0.00 3.36
2115 2643 2.027385 CCTGAGATCACATCACCGAGA 58.973 52.381 0.00 0.00 0.00 4.04
2116 2644 1.537776 GCCTGAGATCACATCACCGAG 60.538 57.143 0.00 0.00 0.00 4.63
2134 2662 3.065371 ACTTAATTAGTCTGCAATGCGCC 59.935 43.478 4.18 0.00 33.07 6.53
2164 2714 3.628008 TGCGAGGGTGAGACTAATCTAA 58.372 45.455 0.00 0.00 34.34 2.10
2226 2776 5.372343 AAGACAAAAAGGGCTTGGAAAAT 57.628 34.783 0.00 0.00 0.00 1.82
2239 2789 4.006319 CCCCAAAGCACAAAAGACAAAAA 58.994 39.130 0.00 0.00 0.00 1.94
2254 2804 4.919793 AGCATCATATCTGATCCCCAAAG 58.080 43.478 0.00 0.00 40.20 2.77
2261 2811 5.991861 AGATCCCAAGCATCATATCTGATC 58.008 41.667 0.00 0.00 40.20 2.92
2290 2840 2.247437 GGATGCTTGGACGGATCGC 61.247 63.158 0.00 0.00 33.13 4.58
2333 2883 3.965694 ACTACTAGACCACGGTTCTCAT 58.034 45.455 0.00 0.00 0.00 2.90
2341 2898 7.548780 GTCCTAAGGATATACTACTAGACCACG 59.451 44.444 0.00 0.00 32.73 4.94
2372 2929 4.450080 GTGTTGGTTAGGCTTGTACAGTAC 59.550 45.833 3.49 3.49 0.00 2.73
2395 3225 1.982395 TGGACGGGCCACTAGTCAG 60.982 63.158 4.39 0.00 43.33 3.51
2425 3291 8.638565 GTTGTATTGCTGCAACTTATTAAACTG 58.361 33.333 18.51 0.00 42.61 3.16
2430 3296 7.652727 TGTTGTTGTATTGCTGCAACTTATTA 58.347 30.769 18.51 2.72 45.15 0.98
2431 3297 6.511416 TGTTGTTGTATTGCTGCAACTTATT 58.489 32.000 18.51 3.80 45.15 1.40
2432 3298 6.083098 TGTTGTTGTATTGCTGCAACTTAT 57.917 33.333 18.51 4.21 45.15 1.73
2456 3322 9.010029 TCTTGAGGGAAAGTATGTTAATTTCAC 57.990 33.333 8.98 5.88 44.10 3.18
2464 3330 5.106157 CGCATTTCTTGAGGGAAAGTATGTT 60.106 40.000 0.00 0.00 38.38 2.71
2466 3332 4.731773 GCGCATTTCTTGAGGGAAAGTATG 60.732 45.833 0.30 0.00 38.38 2.39
2473 3339 0.248012 TACGCGCATTTCTTGAGGGA 59.752 50.000 5.73 0.00 39.91 4.20
2474 3340 0.652592 CTACGCGCATTTCTTGAGGG 59.347 55.000 5.73 0.00 42.57 4.30
2481 3347 1.327460 TGCTCAATCTACGCGCATTTC 59.673 47.619 5.73 0.00 0.00 2.17
2514 3395 3.595108 GACGCGGCAGTGGCTTTTC 62.595 63.158 7.34 3.98 40.87 2.29
2515 3396 3.660111 GACGCGGCAGTGGCTTTT 61.660 61.111 7.34 0.00 40.87 2.27
2520 3401 2.726691 CTTAACGACGCGGCAGTGG 61.727 63.158 14.85 0.00 0.00 4.00
2521 3402 2.726691 CCTTAACGACGCGGCAGTG 61.727 63.158 14.85 0.00 0.00 3.66
2522 3403 2.431942 CCTTAACGACGCGGCAGT 60.432 61.111 14.85 8.43 0.00 4.40
2523 3404 1.952266 GAACCTTAACGACGCGGCAG 61.952 60.000 14.85 7.64 0.00 4.85
2524 3405 2.023223 GAACCTTAACGACGCGGCA 61.023 57.895 14.85 0.00 0.00 5.69
2526 3407 0.668401 AAGGAACCTTAACGACGCGG 60.668 55.000 12.47 0.00 34.05 6.46
2530 3411 5.176592 AGCAGAATAAGGAACCTTAACGAC 58.823 41.667 15.81 10.70 41.21 4.34
2531 3412 5.416271 AGCAGAATAAGGAACCTTAACGA 57.584 39.130 15.81 0.00 41.21 3.85
2532 3413 4.267928 CGAGCAGAATAAGGAACCTTAACG 59.732 45.833 15.81 9.82 41.21 3.18
2534 3415 5.416947 GTCGAGCAGAATAAGGAACCTTAA 58.583 41.667 15.81 2.28 41.21 1.85
2557 4403 1.878953 ACACCACAGACTAAAAGGCG 58.121 50.000 0.00 0.00 0.00 5.52
2568 4414 0.108992 GCCATGCATCAACACCACAG 60.109 55.000 0.00 0.00 0.00 3.66
2572 4418 1.153706 GCTGCCATGCATCAACACC 60.154 57.895 0.00 0.00 38.13 4.16
2580 4426 3.908904 AACCCCATGCTGCCATGCA 62.909 57.895 0.00 0.00 45.97 3.96
2587 4433 1.076777 CCTACCCAACCCCATGCTG 60.077 63.158 0.00 0.00 0.00 4.41
2634 4492 8.744652 CCTATCAGAAGACGAATATGGAAGTAT 58.255 37.037 0.00 0.00 0.00 2.12
2635 4493 7.176865 CCCTATCAGAAGACGAATATGGAAGTA 59.823 40.741 0.00 0.00 0.00 2.24
2636 4494 6.015010 CCCTATCAGAAGACGAATATGGAAGT 60.015 42.308 0.00 0.00 0.00 3.01
2637 4495 6.393990 CCCTATCAGAAGACGAATATGGAAG 58.606 44.000 0.00 0.00 0.00 3.46
2638 4496 5.279506 GCCCTATCAGAAGACGAATATGGAA 60.280 44.000 0.00 0.00 0.00 3.53
2639 4497 4.220821 GCCCTATCAGAAGACGAATATGGA 59.779 45.833 0.00 0.00 0.00 3.41
2640 4498 4.499183 GCCCTATCAGAAGACGAATATGG 58.501 47.826 0.00 0.00 0.00 2.74
2641 4499 4.169508 CGCCCTATCAGAAGACGAATATG 58.830 47.826 0.00 0.00 0.00 1.78
2642 4500 3.827302 ACGCCCTATCAGAAGACGAATAT 59.173 43.478 0.00 0.00 0.00 1.28
2643 4501 3.220110 ACGCCCTATCAGAAGACGAATA 58.780 45.455 0.00 0.00 0.00 1.75
2644 4502 2.032620 ACGCCCTATCAGAAGACGAAT 58.967 47.619 0.00 0.00 0.00 3.34
2645 4503 1.471119 ACGCCCTATCAGAAGACGAA 58.529 50.000 0.00 0.00 0.00 3.85
2646 4504 1.134367 CAACGCCCTATCAGAAGACGA 59.866 52.381 0.00 0.00 0.00 4.20
2647 4505 1.134367 TCAACGCCCTATCAGAAGACG 59.866 52.381 0.00 0.00 0.00 4.18
2648 4506 2.094182 TGTCAACGCCCTATCAGAAGAC 60.094 50.000 0.00 0.00 0.00 3.01
2649 4507 2.166459 CTGTCAACGCCCTATCAGAAGA 59.834 50.000 0.00 0.00 0.00 2.87
2650 4508 2.093973 ACTGTCAACGCCCTATCAGAAG 60.094 50.000 0.00 0.00 0.00 2.85
2651 4509 1.899814 ACTGTCAACGCCCTATCAGAA 59.100 47.619 0.00 0.00 0.00 3.02
2652 4510 1.204704 CACTGTCAACGCCCTATCAGA 59.795 52.381 0.00 0.00 0.00 3.27
2653 4511 1.204704 TCACTGTCAACGCCCTATCAG 59.795 52.381 0.00 0.00 0.00 2.90
2654 4512 1.067142 GTCACTGTCAACGCCCTATCA 60.067 52.381 0.00 0.00 0.00 2.15
2655 4513 1.641577 GTCACTGTCAACGCCCTATC 58.358 55.000 0.00 0.00 0.00 2.08
2656 4514 0.249398 GGTCACTGTCAACGCCCTAT 59.751 55.000 0.00 0.00 0.00 2.57
2678 4536 0.370273 GAAGAAGCATACGCCGTGTG 59.630 55.000 9.80 9.80 39.83 3.82
2680 4538 0.647410 CTGAAGAAGCATACGCCGTG 59.353 55.000 0.00 0.00 39.83 4.94
2686 4544 3.533606 TGAGAGCCTGAAGAAGCATAC 57.466 47.619 0.00 0.00 0.00 2.39
2741 4599 7.610305 GGAGGTTAGATGTGACATCCTTAAAAA 59.390 37.037 21.05 4.81 42.00 1.94
2742 4600 7.110155 GGAGGTTAGATGTGACATCCTTAAAA 58.890 38.462 21.05 6.42 42.00 1.52
2743 4601 6.352737 GGGAGGTTAGATGTGACATCCTTAAA 60.353 42.308 21.05 8.69 44.05 1.52
2744 4602 5.130477 GGGAGGTTAGATGTGACATCCTTAA 59.870 44.000 21.05 11.73 44.05 1.85
2745 4603 4.654262 GGGAGGTTAGATGTGACATCCTTA 59.346 45.833 21.05 6.22 44.05 2.69
2746 4604 3.456277 GGGAGGTTAGATGTGACATCCTT 59.544 47.826 21.05 7.22 44.05 3.36
2747 4605 3.041946 GGGAGGTTAGATGTGACATCCT 58.958 50.000 21.05 12.23 44.05 3.24
2748 4606 2.771943 TGGGAGGTTAGATGTGACATCC 59.228 50.000 21.05 9.65 43.91 3.51
2749 4607 3.197766 TGTGGGAGGTTAGATGTGACATC 59.802 47.826 17.46 17.46 0.00 3.06
2750 4608 3.181329 TGTGGGAGGTTAGATGTGACAT 58.819 45.455 0.00 0.00 0.00 3.06
2751 4609 2.615391 TGTGGGAGGTTAGATGTGACA 58.385 47.619 0.00 0.00 0.00 3.58
2752 4610 3.695830 TTGTGGGAGGTTAGATGTGAC 57.304 47.619 0.00 0.00 0.00 3.67
2753 4611 4.927267 ATTTGTGGGAGGTTAGATGTGA 57.073 40.909 0.00 0.00 0.00 3.58
2757 4615 9.686683 GCATTATATATTTGTGGGAGGTTAGAT 57.313 33.333 0.00 0.00 0.00 1.98
2758 4616 8.664992 TGCATTATATATTTGTGGGAGGTTAGA 58.335 33.333 0.00 0.00 0.00 2.10
2759 4617 8.862325 TGCATTATATATTTGTGGGAGGTTAG 57.138 34.615 0.00 0.00 0.00 2.34
2760 4618 9.821240 AATGCATTATATATTTGTGGGAGGTTA 57.179 29.630 11.02 0.00 0.00 2.85
2761 4619 8.725606 AATGCATTATATATTTGTGGGAGGTT 57.274 30.769 11.02 0.00 0.00 3.50
2762 4620 9.821240 TTAATGCATTATATATTTGTGGGAGGT 57.179 29.630 19.51 0.00 0.00 3.85
2817 4675 9.349713 TGACTTTCACTTTATTTGTGGTCTATT 57.650 29.630 0.00 0.00 36.21 1.73
2818 4676 8.918202 TGACTTTCACTTTATTTGTGGTCTAT 57.082 30.769 0.00 0.00 36.21 1.98
2819 4677 7.990886 ACTGACTTTCACTTTATTTGTGGTCTA 59.009 33.333 0.00 0.00 36.21 2.59
2820 4678 6.828785 ACTGACTTTCACTTTATTTGTGGTCT 59.171 34.615 0.00 0.00 36.21 3.85
2821 4679 7.027778 ACTGACTTTCACTTTATTTGTGGTC 57.972 36.000 0.00 0.00 36.21 4.02
2822 4680 7.404671 AACTGACTTTCACTTTATTTGTGGT 57.595 32.000 0.00 0.00 36.21 4.16
2823 4681 9.450807 CTAAACTGACTTTCACTTTATTTGTGG 57.549 33.333 0.00 0.00 36.21 4.17
2829 4687 9.778741 TCACATCTAAACTGACTTTCACTTTAT 57.221 29.630 0.00 0.00 0.00 1.40
2830 4688 9.778741 ATCACATCTAAACTGACTTTCACTTTA 57.221 29.630 0.00 0.00 0.00 1.85
2831 4689 8.562892 CATCACATCTAAACTGACTTTCACTTT 58.437 33.333 0.00 0.00 0.00 2.66
2832 4690 7.716998 ACATCACATCTAAACTGACTTTCACTT 59.283 33.333 0.00 0.00 0.00 3.16
2833 4691 7.172190 CACATCACATCTAAACTGACTTTCACT 59.828 37.037 0.00 0.00 0.00 3.41
2834 4692 7.041780 ACACATCACATCTAAACTGACTTTCAC 60.042 37.037 0.00 0.00 0.00 3.18
2835 4693 6.992123 ACACATCACATCTAAACTGACTTTCA 59.008 34.615 0.00 0.00 0.00 2.69
2836 4694 7.360438 GGACACATCACATCTAAACTGACTTTC 60.360 40.741 0.00 0.00 0.00 2.62
2837 4695 6.428159 GGACACATCACATCTAAACTGACTTT 59.572 38.462 0.00 0.00 0.00 2.66
2838 4696 5.934625 GGACACATCACATCTAAACTGACTT 59.065 40.000 0.00 0.00 0.00 3.01
2839 4697 5.247110 AGGACACATCACATCTAAACTGACT 59.753 40.000 0.00 0.00 0.00 3.41
2840 4698 5.482908 AGGACACATCACATCTAAACTGAC 58.517 41.667 0.00 0.00 0.00 3.51
2841 4699 5.745312 AGGACACATCACATCTAAACTGA 57.255 39.130 0.00 0.00 0.00 3.41
2842 4700 6.867550 TCTAGGACACATCACATCTAAACTG 58.132 40.000 0.00 0.00 0.00 3.16
2843 4701 6.892456 TCTCTAGGACACATCACATCTAAACT 59.108 38.462 0.00 0.00 0.00 2.66
2844 4702 7.067615 TCTCTCTAGGACACATCACATCTAAAC 59.932 40.741 0.00 0.00 0.00 2.01
2845 4703 7.067615 GTCTCTCTAGGACACATCACATCTAAA 59.932 40.741 0.00 0.00 34.23 1.85
2846 4704 6.544197 GTCTCTCTAGGACACATCACATCTAA 59.456 42.308 0.00 0.00 34.23 2.10
2847 4705 6.058833 GTCTCTCTAGGACACATCACATCTA 58.941 44.000 0.00 0.00 34.23 1.98
2848 4706 4.887071 GTCTCTCTAGGACACATCACATCT 59.113 45.833 0.00 0.00 34.23 2.90
2849 4707 4.037446 GGTCTCTCTAGGACACATCACATC 59.963 50.000 0.00 0.00 35.61 3.06
2850 4708 3.957497 GGTCTCTCTAGGACACATCACAT 59.043 47.826 0.00 0.00 35.61 3.21
2851 4709 3.010696 AGGTCTCTCTAGGACACATCACA 59.989 47.826 0.00 0.00 35.61 3.58
2852 4710 3.626930 AGGTCTCTCTAGGACACATCAC 58.373 50.000 0.00 0.00 35.61 3.06
2853 4711 3.267031 TGAGGTCTCTCTAGGACACATCA 59.733 47.826 0.00 0.00 40.58 3.07
2854 4712 3.892284 TGAGGTCTCTCTAGGACACATC 58.108 50.000 0.00 0.00 40.58 3.06
2855 4713 4.323569 TTGAGGTCTCTCTAGGACACAT 57.676 45.455 0.00 0.00 40.58 3.21
2856 4714 3.808834 TTGAGGTCTCTCTAGGACACA 57.191 47.619 0.00 0.00 40.58 3.72
2857 4715 6.969993 ATTATTGAGGTCTCTCTAGGACAC 57.030 41.667 0.00 0.00 40.58 3.67
2858 4716 7.231722 GCTTATTATTGAGGTCTCTCTAGGACA 59.768 40.741 0.00 0.00 40.58 4.02
2859 4717 7.309560 GGCTTATTATTGAGGTCTCTCTAGGAC 60.310 44.444 0.00 0.00 40.58 3.85
2860 4718 6.722129 GGCTTATTATTGAGGTCTCTCTAGGA 59.278 42.308 0.00 0.00 40.58 2.94
2861 4719 6.071051 GGGCTTATTATTGAGGTCTCTCTAGG 60.071 46.154 0.00 0.00 40.58 3.02
2862 4720 6.723977 AGGGCTTATTATTGAGGTCTCTCTAG 59.276 42.308 0.00 0.00 40.58 2.43
2863 4721 6.625267 AGGGCTTATTATTGAGGTCTCTCTA 58.375 40.000 0.00 0.00 40.58 2.43
2864 4722 5.472347 AGGGCTTATTATTGAGGTCTCTCT 58.528 41.667 0.00 0.00 40.58 3.10
2865 4723 5.279758 GGAGGGCTTATTATTGAGGTCTCTC 60.280 48.000 0.00 0.00 40.36 3.20
2866 4724 4.595350 GGAGGGCTTATTATTGAGGTCTCT 59.405 45.833 0.00 0.00 0.00 3.10
2867 4725 4.348168 TGGAGGGCTTATTATTGAGGTCTC 59.652 45.833 0.00 0.00 0.00 3.36
2868 4726 4.307259 TGGAGGGCTTATTATTGAGGTCT 58.693 43.478 0.00 0.00 0.00 3.85
2869 4727 4.706842 TGGAGGGCTTATTATTGAGGTC 57.293 45.455 0.00 0.00 0.00 3.85
2870 4728 5.466127 TTTGGAGGGCTTATTATTGAGGT 57.534 39.130 0.00 0.00 0.00 3.85
2871 4729 5.182001 CGATTTGGAGGGCTTATTATTGAGG 59.818 44.000 0.00 0.00 0.00 3.86
2872 4730 5.182001 CCGATTTGGAGGGCTTATTATTGAG 59.818 44.000 0.00 0.00 42.00 3.02
2873 4731 5.070001 CCGATTTGGAGGGCTTATTATTGA 58.930 41.667 0.00 0.00 42.00 2.57
2874 4732 5.070001 TCCGATTTGGAGGGCTTATTATTG 58.930 41.667 0.00 0.00 43.74 1.90
2875 4733 5.319043 TCCGATTTGGAGGGCTTATTATT 57.681 39.130 0.00 0.00 43.74 1.40
2876 4734 4.993705 TCCGATTTGGAGGGCTTATTAT 57.006 40.909 0.00 0.00 43.74 1.28
2952 4840 2.802816 GCTAAATCTACGGCACATCTGG 59.197 50.000 0.00 0.00 0.00 3.86
3011 4899 2.418910 CGGATCCGACTGACAGCCT 61.419 63.158 30.62 0.00 42.83 4.58
3024 4912 2.242926 TGACCTGATCTGATCCGGATC 58.757 52.381 33.41 33.41 44.12 3.36
3025 4913 2.388526 TGACCTGATCTGATCCGGAT 57.611 50.000 28.08 19.21 37.15 4.18
3026 4914 2.158400 AGATGACCTGATCTGATCCGGA 60.158 50.000 28.08 6.61 37.15 5.14
3027 4915 2.246469 AGATGACCTGATCTGATCCGG 58.754 52.381 22.02 22.02 39.31 5.14
3085 5189 2.001803 CAATTCCCTCCCAGCAGGA 58.998 57.895 0.00 0.00 44.91 3.86
3086 5190 1.755783 GCAATTCCCTCCCAGCAGG 60.756 63.158 0.00 0.00 0.00 4.85
3087 5191 1.000521 TGCAATTCCCTCCCAGCAG 60.001 57.895 0.00 0.00 0.00 4.24
3088 5192 1.304381 GTGCAATTCCCTCCCAGCA 60.304 57.895 0.00 0.00 0.00 4.41
3090 5194 0.682209 CTGGTGCAATTCCCTCCCAG 60.682 60.000 1.78 1.78 34.10 4.45
3091 5195 1.139498 TCTGGTGCAATTCCCTCCCA 61.139 55.000 0.00 0.00 0.00 4.37
3092 5196 0.039618 TTCTGGTGCAATTCCCTCCC 59.960 55.000 0.00 0.00 0.00 4.30
3093 5197 1.923356 TTTCTGGTGCAATTCCCTCC 58.077 50.000 0.00 0.00 0.00 4.30
3094 5198 5.859205 AATATTTCTGGTGCAATTCCCTC 57.141 39.130 0.00 0.00 0.00 4.30
3095 5199 5.163519 CGAAATATTTCTGGTGCAATTCCCT 60.164 40.000 22.52 0.00 35.07 4.20
3132 5245 3.056250 CCGGCGTAGGACTCTCTACTATA 60.056 52.174 6.01 0.00 37.92 1.31
3133 5246 2.289569 CCGGCGTAGGACTCTCTACTAT 60.290 54.545 6.01 0.00 37.92 2.12
3145 5331 0.533951 AAAGTAAGGACCGGCGTAGG 59.466 55.000 6.01 0.00 37.30 3.18
3184 5370 2.558359 AGGGGAAAAGAATTGTTCGCAG 59.442 45.455 10.46 0.00 38.17 5.18
3186 5372 2.926586 GCAGGGGAAAAGAATTGTTCGC 60.927 50.000 0.00 0.00 36.31 4.70
3187 5373 2.558359 AGCAGGGGAAAAGAATTGTTCG 59.442 45.455 0.00 0.00 34.02 3.95
3188 5374 4.607293 AAGCAGGGGAAAAGAATTGTTC 57.393 40.909 0.00 0.00 0.00 3.18
3189 5375 4.444733 CCAAAGCAGGGGAAAAGAATTGTT 60.445 41.667 0.00 0.00 0.00 2.83
3190 5376 3.071457 CCAAAGCAGGGGAAAAGAATTGT 59.929 43.478 0.00 0.00 0.00 2.71
3191 5377 3.667360 CCAAAGCAGGGGAAAAGAATTG 58.333 45.455 0.00 0.00 0.00 2.32
3192 5378 2.038952 GCCAAAGCAGGGGAAAAGAATT 59.961 45.455 0.00 0.00 39.53 2.17
3193 5379 1.625315 GCCAAAGCAGGGGAAAAGAAT 59.375 47.619 0.00 0.00 39.53 2.40
3199 5385 1.075482 CTCAGCCAAAGCAGGGGAA 59.925 57.895 0.00 0.00 43.56 3.97
3203 5389 1.277557 AGTCTACTCAGCCAAAGCAGG 59.722 52.381 0.00 0.00 43.56 4.85
3207 5393 4.744795 ATACCAGTCTACTCAGCCAAAG 57.255 45.455 0.00 0.00 0.00 2.77
3210 5396 4.521536 ACTATACCAGTCTACTCAGCCA 57.478 45.455 0.00 0.00 28.33 4.75
3217 5403 9.570488 CTACTTTTGTGAACTATACCAGTCTAC 57.430 37.037 0.00 0.00 36.04 2.59
3220 5406 7.097834 AGCTACTTTTGTGAACTATACCAGTC 58.902 38.462 0.00 0.00 36.04 3.51
3221 5407 7.005709 AGCTACTTTTGTGAACTATACCAGT 57.994 36.000 0.00 0.00 40.05 4.00
3222 5408 8.251721 ACTAGCTACTTTTGTGAACTATACCAG 58.748 37.037 0.00 0.00 0.00 4.00
3223 5409 8.130671 ACTAGCTACTTTTGTGAACTATACCA 57.869 34.615 0.00 0.00 0.00 3.25
3227 5413 9.601217 CCATTACTAGCTACTTTTGTGAACTAT 57.399 33.333 0.00 0.00 0.00 2.12
3228 5414 8.038944 CCCATTACTAGCTACTTTTGTGAACTA 58.961 37.037 0.00 0.00 0.00 2.24
3229 5415 6.879458 CCCATTACTAGCTACTTTTGTGAACT 59.121 38.462 0.00 0.00 0.00 3.01
3230 5416 6.403309 GCCCATTACTAGCTACTTTTGTGAAC 60.403 42.308 0.00 0.00 0.00 3.18
3231 5417 5.646360 GCCCATTACTAGCTACTTTTGTGAA 59.354 40.000 0.00 0.00 0.00 3.18
3232 5418 5.045869 AGCCCATTACTAGCTACTTTTGTGA 60.046 40.000 0.00 0.00 34.38 3.58
3233 5419 5.065218 CAGCCCATTACTAGCTACTTTTGTG 59.935 44.000 0.00 0.00 34.38 3.33
3235 5421 4.576463 CCAGCCCATTACTAGCTACTTTTG 59.424 45.833 0.00 0.00 34.38 2.44
3240 5426 4.625607 AATCCAGCCCATTACTAGCTAC 57.374 45.455 0.00 0.00 34.38 3.58
3241 5427 5.376625 CAAAATCCAGCCCATTACTAGCTA 58.623 41.667 0.00 0.00 34.38 3.32
3244 5430 4.210331 AGCAAAATCCAGCCCATTACTAG 58.790 43.478 0.00 0.00 0.00 2.57
3245 5431 4.249638 AGCAAAATCCAGCCCATTACTA 57.750 40.909 0.00 0.00 0.00 1.82
3268 5486 9.906660 GATCAAACACATTACCATTTTGTTCTA 57.093 29.630 0.00 0.00 30.14 2.10
3270 5488 7.117667 GGGATCAAACACATTACCATTTTGTTC 59.882 37.037 0.00 0.00 30.14 3.18
3271 5489 6.934083 GGGATCAAACACATTACCATTTTGTT 59.066 34.615 0.00 0.00 31.74 2.83
3280 5498 6.813152 CCTGATTTTGGGATCAAACACATTAC 59.187 38.462 0.00 0.00 41.97 1.89
3288 5506 4.160252 GCTAAGCCTGATTTTGGGATCAAA 59.840 41.667 0.00 0.00 40.71 2.69
3319 6525 6.127366 GGCCCACATCAATCAAGAGATAAAAA 60.127 38.462 0.00 0.00 33.08 1.94
3326 6532 1.019673 CGGCCCACATCAATCAAGAG 58.980 55.000 0.00 0.00 0.00 2.85
3331 6537 1.829533 ATGGCGGCCCACATCAATC 60.830 57.895 17.97 0.00 45.77 2.67
3332 6538 2.129146 CATGGCGGCCCACATCAAT 61.129 57.895 17.97 0.00 45.77 2.57
3419 6641 2.834549 TCCTCAGAGAACCTGGCTAAAG 59.165 50.000 0.00 0.00 43.12 1.85
3447 6669 7.706159 TGATAAAATGAATGACATGGCTACAC 58.294 34.615 0.00 0.00 39.39 2.90
3487 6709 3.788694 TCGCGTGAAACAACAGAAAAATG 59.211 39.130 5.77 0.00 35.74 2.32
3488 6710 3.789224 GTCGCGTGAAACAACAGAAAAAT 59.211 39.130 5.77 0.00 35.74 1.82
3498 6720 2.904011 AAAAACAGTCGCGTGAAACA 57.096 40.000 5.77 0.00 35.74 2.83
3526 6749 2.122564 CGACACTGATCGATCACATGG 58.877 52.381 26.95 19.65 45.13 3.66
3540 6763 0.463654 TGCAAAGAGCCAACGACACT 60.464 50.000 0.00 0.00 44.83 3.55
3545 6768 2.256461 GCCTGCAAAGAGCCAACG 59.744 61.111 0.00 0.00 44.83 4.10
3672 6895 1.475682 GGACAACGTAGACCCTGTAGG 59.524 57.143 0.00 0.00 43.78 3.18
3688 6911 2.680352 GTGAGGAGGCGGAGGACA 60.680 66.667 0.00 0.00 0.00 4.02
3969 7192 3.863543 CGCGCATGGCATCGTCAA 61.864 61.111 8.75 0.00 43.84 3.18
4021 7244 2.833533 CGTTACGCCGTCCGGGATA 61.834 63.158 7.97 0.00 42.52 2.59
4070 7293 3.567797 GATCTGCTTGCCGCCGTC 61.568 66.667 0.00 0.00 38.05 4.79
4168 7403 0.689055 AGAGCAGGTTGATGAGCACA 59.311 50.000 0.00 0.00 0.00 4.57
4183 7418 1.446272 GTACACCACCGAGCAGAGC 60.446 63.158 0.00 0.00 0.00 4.09
4412 7647 1.458827 CGCTGACTTGAGCTCTTCAAC 59.541 52.381 16.19 9.16 40.82 3.18
4415 7650 1.724082 GAACGCTGACTTGAGCTCTTC 59.276 52.381 16.19 9.24 36.77 2.87
4450 7690 6.594159 ACGTATTAGAACAAAGAACATGGAGG 59.406 38.462 0.00 0.00 0.00 4.30
4517 7801 2.993471 GCCAAAGATGCCCACCACG 61.993 63.158 0.00 0.00 0.00 4.94
4834 11249 3.112709 GTTCAGAGTCACCCGCGC 61.113 66.667 0.00 0.00 0.00 6.86
4835 11250 1.734477 CAGTTCAGAGTCACCCGCG 60.734 63.158 0.00 0.00 0.00 6.46
4963 11378 7.332182 TCCAAAACAAAAATGTACAAACTCCAC 59.668 33.333 0.00 0.00 0.00 4.02
5082 11499 2.237751 GGTCCATGGCGATCGAACG 61.238 63.158 21.57 11.09 0.00 3.95
5088 11505 2.507944 GAGCAGGTCCATGGCGAT 59.492 61.111 6.96 0.00 0.00 4.58
5099 11516 1.336332 CGATCGTTAGATGGGAGCAGG 60.336 57.143 7.03 0.00 37.19 4.85
5112 11529 2.263540 CCCGGGTGAACGATCGTT 59.736 61.111 32.16 32.16 41.54 3.85
5118 11535 4.760047 CTGCTCCCCGGGTGAACG 62.760 72.222 21.85 2.99 0.00 3.95
5125 11542 4.463879 CTGTGAGCTGCTCCCCGG 62.464 72.222 25.61 16.98 0.00 5.73
5154 11573 4.250116 AGATGCTCTGAAACGCCTATAG 57.750 45.455 0.00 0.00 0.00 1.31
5161 11580 8.136057 AGTTCAAATATAGATGCTCTGAAACG 57.864 34.615 0.00 0.00 0.00 3.60
5162 11581 9.713740 CAAGTTCAAATATAGATGCTCTGAAAC 57.286 33.333 0.00 0.00 0.00 2.78
5163 11582 8.896744 CCAAGTTCAAATATAGATGCTCTGAAA 58.103 33.333 0.00 0.00 0.00 2.69
5164 11583 7.012704 GCCAAGTTCAAATATAGATGCTCTGAA 59.987 37.037 0.00 0.00 0.00 3.02
5165 11584 6.484643 GCCAAGTTCAAATATAGATGCTCTGA 59.515 38.462 0.00 0.00 0.00 3.27
5166 11585 6.261603 TGCCAAGTTCAAATATAGATGCTCTG 59.738 38.462 0.00 0.00 0.00 3.35
5167 11586 6.359804 TGCCAAGTTCAAATATAGATGCTCT 58.640 36.000 0.00 0.00 0.00 4.09
5169 11588 7.408756 TTTGCCAAGTTCAAATATAGATGCT 57.591 32.000 0.00 0.00 0.00 3.79
5170 11589 8.139989 AGATTTGCCAAGTTCAAATATAGATGC 58.860 33.333 3.27 0.00 42.30 3.91
5171 11590 9.459640 CAGATTTGCCAAGTTCAAATATAGATG 57.540 33.333 3.27 0.00 42.30 2.90
5172 11591 9.412460 TCAGATTTGCCAAGTTCAAATATAGAT 57.588 29.630 3.27 0.00 42.30 1.98
5173 11592 8.677300 GTCAGATTTGCCAAGTTCAAATATAGA 58.323 33.333 3.27 0.92 42.30 1.98
5174 11593 8.461222 TGTCAGATTTGCCAAGTTCAAATATAG 58.539 33.333 3.27 0.00 42.30 1.31
5175 11594 8.243426 GTGTCAGATTTGCCAAGTTCAAATATA 58.757 33.333 3.27 0.00 42.30 0.86
5177 11596 6.446318 GTGTCAGATTTGCCAAGTTCAAATA 58.554 36.000 3.27 0.00 42.30 1.40
5178 11597 5.291971 GTGTCAGATTTGCCAAGTTCAAAT 58.708 37.500 2.96 2.96 44.19 2.32
5179 11598 4.441356 GGTGTCAGATTTGCCAAGTTCAAA 60.441 41.667 0.00 0.00 37.75 2.69
5180 11599 3.068024 GGTGTCAGATTTGCCAAGTTCAA 59.932 43.478 0.00 0.00 0.00 2.69
5182 11601 2.887152 AGGTGTCAGATTTGCCAAGTTC 59.113 45.455 0.00 0.00 0.00 3.01
5183 11602 2.887152 GAGGTGTCAGATTTGCCAAGTT 59.113 45.455 0.00 0.00 0.00 2.66
5184 11603 2.158623 TGAGGTGTCAGATTTGCCAAGT 60.159 45.455 0.00 0.00 0.00 3.16
5185 11604 2.507484 TGAGGTGTCAGATTTGCCAAG 58.493 47.619 0.00 0.00 0.00 3.61
5186 11605 2.655090 TGAGGTGTCAGATTTGCCAA 57.345 45.000 0.00 0.00 0.00 4.52
5190 11609 2.350772 GGCGTTTGAGGTGTCAGATTTG 60.351 50.000 0.00 0.00 32.98 2.32
5199 11618 3.726517 CCGCAGGCGTTTGAGGTG 61.727 66.667 13.07 0.00 46.14 4.00
5218 11637 0.104120 TTGAGGCGTGACCGGATATG 59.896 55.000 9.46 2.59 46.52 1.78
5219 11638 0.828022 TTTGAGGCGTGACCGGATAT 59.172 50.000 9.46 0.00 46.52 1.63
5259 11678 9.918630 ATGAATTTGAGGTTTCTAATTTGAGTG 57.081 29.630 0.00 0.00 38.36 3.51
5309 11730 0.108329 CGGAGGAGCTCGGCTTAAAA 60.108 55.000 7.83 0.00 39.88 1.52
5382 11805 2.351336 CTACTCTACCTTGCCGGCGG 62.351 65.000 24.35 24.35 35.61 6.13
5442 11865 2.795291 TAGTAGGGCATGGGAGATGT 57.205 50.000 0.00 0.00 0.00 3.06
5502 11925 1.204231 CAGATCCGGCATCGATCTGAT 59.796 52.381 22.79 0.00 44.28 2.90
5563 11986 2.741985 CACATCAGTTCGGGCGCA 60.742 61.111 10.83 0.00 0.00 6.09
5679 12102 0.666274 GACGAGAACATGGCACGACA 60.666 55.000 12.84 0.00 0.00 4.35
5769 12193 4.203076 GCGGTCCGTATGGCGTCT 62.203 66.667 13.94 0.00 39.32 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.