Multiple sequence alignment - TraesCS2A01G482600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G482600 chr2A 100.000 2663 0 0 1 2663 718966658 718963996 0.000000e+00 4918.0
1 TraesCS2A01G482600 chr2A 91.320 841 61 11 830 1668 718975702 718976532 0.000000e+00 1138.0
2 TraesCS2A01G482600 chr2A 88.813 438 34 4 2226 2651 30979524 30979958 8.450000e-145 523.0
3 TraesCS2A01G482600 chr2A 98.529 136 2 0 401 536 444641375 444641510 9.530000e-60 241.0
4 TraesCS2A01G482600 chr2A 86.425 221 20 4 2229 2439 718978264 718978484 1.590000e-57 233.0
5 TraesCS2A01G482600 chr2A 95.745 141 3 3 401 539 510079149 510079010 9.590000e-55 224.0
6 TraesCS2A01G482600 chr2A 89.437 142 7 4 2043 2182 30979275 30979410 3.520000e-39 172.0
7 TraesCS2A01G482600 chr2D 91.835 1090 45 9 830 1891 584858762 584857689 0.000000e+00 1480.0
8 TraesCS2A01G482600 chr2D 93.194 720 42 4 964 1682 584867282 584867995 0.000000e+00 1051.0
9 TraesCS2A01G482600 chr2D 89.163 406 40 3 2 404 584860097 584859693 1.100000e-138 503.0
10 TraesCS2A01G482600 chr2D 88.046 435 37 10 2230 2651 584873703 584874135 3.960000e-138 501.0
11 TraesCS2A01G482600 chr2D 90.062 322 20 5 2226 2537 584857061 584856742 8.880000e-110 407.0
12 TraesCS2A01G482600 chr2D 91.608 143 6 3 2043 2185 584857308 584857172 2.710000e-45 193.0
13 TraesCS2A01G482600 chr2D 91.463 82 7 0 1904 1985 584857412 584857331 2.170000e-21 113.0
14 TraesCS2A01G482600 chr2D 81.679 131 9 5 838 968 584867125 584867240 7.850000e-16 95.3
15 TraesCS2A01G482600 chr2D 92.453 53 3 1 574 626 584859600 584859549 1.020000e-09 75.0
16 TraesCS2A01G482600 chr2B 90.297 1010 49 24 898 1891 705348942 705347966 0.000000e+00 1277.0
17 TraesCS2A01G482600 chr2B 89.211 862 62 15 830 1682 705357272 705358111 0.000000e+00 1048.0
18 TraesCS2A01G482600 chr2B 92.593 270 17 2 2382 2651 705332514 705332248 4.160000e-103 385.0
19 TraesCS2A01G482600 chr2B 89.236 288 19 7 1904 2185 705347770 705347489 1.520000e-92 350.0
20 TraesCS2A01G482600 chr2B 89.498 219 13 6 1971 2182 705359342 705359557 4.370000e-68 268.0
21 TraesCS2A01G482600 chr2B 87.791 172 11 1 2226 2387 705347378 705347207 2.710000e-45 193.0
22 TraesCS2A01G482600 chr2B 82.710 214 14 2 2226 2439 705359671 705359861 4.560000e-38 169.0
23 TraesCS2A01G482600 chr2B 82.883 111 11 5 1999 2108 339114239 339114342 2.820000e-15 93.5
24 TraesCS2A01G482600 chr3D 90.519 675 58 5 993 1664 41746649 41745978 0.000000e+00 887.0
25 TraesCS2A01G482600 chr3A 90.149 670 60 5 998 1664 53257335 53256669 0.000000e+00 867.0
26 TraesCS2A01G482600 chr3B 89.333 675 66 5 993 1664 65269455 65268784 0.000000e+00 843.0
27 TraesCS2A01G482600 chr3B 95.714 140 6 0 400 539 296937218 296937357 2.670000e-55 226.0
28 TraesCS2A01G482600 chrUn 88.290 649 46 11 1130 1764 49875916 49875284 0.000000e+00 750.0
29 TraesCS2A01G482600 chr5A 88.991 436 33 5 2226 2649 539440265 539440697 2.350000e-145 525.0
30 TraesCS2A01G482600 chr5A 97.778 135 3 0 401 535 48728944 48729078 1.590000e-57 233.0
31 TraesCS2A01G482600 chr5A 89.437 142 7 4 2043 2182 539440016 539440151 3.520000e-39 172.0
32 TraesCS2A01G482600 chr4A 97.810 137 3 0 403 539 644456420 644456556 1.230000e-58 237.0
33 TraesCS2A01G482600 chr6B 97.794 136 3 0 403 538 341984869 341984734 4.430000e-58 235.0
34 TraesCS2A01G482600 chr6B 97.778 135 3 0 401 535 135790543 135790409 1.590000e-57 233.0
35 TraesCS2A01G482600 chr6B 97.761 134 2 1 401 533 508476949 508476816 2.060000e-56 230.0
36 TraesCS2A01G482600 chr1A 97.080 137 4 0 401 537 539280553 539280689 5.730000e-57 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G482600 chr2A 718963996 718966658 2662 True 4918.000000 4918 100.000000 1 2663 1 chr2A.!!$R2 2662
1 TraesCS2A01G482600 chr2A 718975702 718978484 2782 False 685.500000 1138 88.872500 830 2439 2 chr2A.!!$F3 1609
2 TraesCS2A01G482600 chr2A 30979275 30979958 683 False 347.500000 523 89.125000 2043 2651 2 chr2A.!!$F2 608
3 TraesCS2A01G482600 chr2D 584867125 584867995 870 False 573.150000 1051 87.436500 838 1682 2 chr2D.!!$F2 844
4 TraesCS2A01G482600 chr2D 584856742 584860097 3355 True 461.833333 1480 91.097333 2 2537 6 chr2D.!!$R1 2535
5 TraesCS2A01G482600 chr2B 705347207 705348942 1735 True 606.666667 1277 89.108000 898 2387 3 chr2B.!!$R2 1489
6 TraesCS2A01G482600 chr2B 705357272 705359861 2589 False 495.000000 1048 87.139667 830 2439 3 chr2B.!!$F2 1609
7 TraesCS2A01G482600 chr3D 41745978 41746649 671 True 887.000000 887 90.519000 993 1664 1 chr3D.!!$R1 671
8 TraesCS2A01G482600 chr3A 53256669 53257335 666 True 867.000000 867 90.149000 998 1664 1 chr3A.!!$R1 666
9 TraesCS2A01G482600 chr3B 65268784 65269455 671 True 843.000000 843 89.333000 993 1664 1 chr3B.!!$R1 671
10 TraesCS2A01G482600 chrUn 49875284 49875916 632 True 750.000000 750 88.290000 1130 1764 1 chrUn.!!$R1 634
11 TraesCS2A01G482600 chr5A 539440016 539440697 681 False 348.500000 525 89.214000 2043 2649 2 chr5A.!!$F2 606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
522 526 0.038159 AACGGAGCAGAGAGAAACCG 60.038 55.0 0.0 0.0 44.77 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1994 5194 1.00358 ACAGGACTCGGTGCATGATTT 59.996 47.619 0.0 0.0 0.0 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.952116 ACCAATTCGAAGTTTTCCCCA 58.048 42.857 3.35 0.00 0.00 4.96
24 25 3.301274 ACCAATTCGAAGTTTTCCCCAA 58.699 40.909 3.35 0.00 0.00 4.12
25 26 3.069016 ACCAATTCGAAGTTTTCCCCAAC 59.931 43.478 3.35 0.00 0.00 3.77
26 27 3.305110 CAATTCGAAGTTTTCCCCAACG 58.695 45.455 3.35 0.00 0.00 4.10
58 60 9.774742 CACTATTTTGACCTTATTAGCAAAGTC 57.225 33.333 0.00 0.00 32.55 3.01
60 62 9.994432 CTATTTTGACCTTATTAGCAAAGTCAG 57.006 33.333 0.00 0.00 32.55 3.51
76 78 1.416772 GTCAGGTATGCTCTAACCCCC 59.583 57.143 0.00 0.00 36.34 5.40
79 81 2.104963 CAGGTATGCTCTAACCCCCTTC 59.895 54.545 0.00 0.00 36.34 3.46
120 122 0.529992 CCCTCGATTCTACCGCCAAC 60.530 60.000 0.00 0.00 0.00 3.77
123 125 1.140161 CGATTCTACCGCCAACCGA 59.860 57.895 0.00 0.00 40.02 4.69
124 126 1.143969 CGATTCTACCGCCAACCGAC 61.144 60.000 0.00 0.00 40.02 4.79
128 130 3.055080 CTACCGCCAACCGACGCTA 62.055 63.158 0.00 0.00 40.02 4.26
143 145 3.314635 CGACGCTAGTAGGGTTAATGAGT 59.685 47.826 19.75 0.00 41.76 3.41
237 241 1.204146 AGTCTACCATTGTCGCCCAT 58.796 50.000 0.00 0.00 0.00 4.00
238 242 1.134401 AGTCTACCATTGTCGCCCATG 60.134 52.381 0.00 0.00 0.00 3.66
251 255 4.016838 CCATGTTGGCGATGGGTT 57.983 55.556 0.00 0.00 37.33 4.11
255 259 2.232452 CCATGTTGGCGATGGGTTAAAA 59.768 45.455 0.00 0.00 37.33 1.52
258 262 0.892063 TTGGCGATGGGTTAAAAGGC 59.108 50.000 0.00 0.00 0.00 4.35
275 279 0.896226 GGCTACCTCCAAAGACGTCT 59.104 55.000 13.58 13.58 0.00 4.18
310 314 0.038343 GGCTACGTCCAACCGTGTTA 60.038 55.000 0.00 0.00 41.92 2.41
312 316 1.068333 GCTACGTCCAACCGTGTTAGA 60.068 52.381 0.00 0.00 41.92 2.10
327 331 1.831736 GTTAGACAGGGGCAGAGCTAA 59.168 52.381 0.00 0.00 0.00 3.09
337 341 0.179936 GCAGAGCTAACTCCCAGCAT 59.820 55.000 0.00 0.00 44.65 3.79
342 346 1.447643 CTAACTCCCAGCATCCCGG 59.552 63.158 0.00 0.00 0.00 5.73
343 347 2.044806 CTAACTCCCAGCATCCCGGG 62.045 65.000 16.85 16.85 44.60 5.73
405 409 8.959705 ATAATACAAAGACACTAAGGTTAGGC 57.040 34.615 1.94 0.00 35.08 3.93
406 410 4.017177 ACAAAGACACTAAGGTTAGGCC 57.983 45.455 0.00 0.00 35.08 5.19
407 411 3.244805 ACAAAGACACTAAGGTTAGGCCC 60.245 47.826 0.00 0.00 38.26 5.80
408 412 2.644060 AGACACTAAGGTTAGGCCCT 57.356 50.000 0.00 0.00 38.26 5.19
409 413 2.188817 AGACACTAAGGTTAGGCCCTG 58.811 52.381 0.00 0.00 38.26 4.45
411 415 2.305052 GACACTAAGGTTAGGCCCTGTT 59.695 50.000 0.00 0.00 38.26 3.16
412 416 2.305052 ACACTAAGGTTAGGCCCTGTTC 59.695 50.000 0.00 0.00 38.26 3.18
413 417 1.553704 ACTAAGGTTAGGCCCTGTTCG 59.446 52.381 0.00 0.00 38.26 3.95
414 418 1.829222 CTAAGGTTAGGCCCTGTTCGA 59.171 52.381 0.00 0.00 38.26 3.71
415 419 1.061546 AAGGTTAGGCCCTGTTCGAA 58.938 50.000 0.00 0.00 38.26 3.71
416 420 1.061546 AGGTTAGGCCCTGTTCGAAA 58.938 50.000 0.00 0.00 38.26 3.46
417 421 1.162698 GGTTAGGCCCTGTTCGAAAC 58.837 55.000 0.00 0.00 0.00 2.78
418 422 1.271217 GGTTAGGCCCTGTTCGAAACT 60.271 52.381 0.00 0.00 0.00 2.66
419 423 2.501261 GTTAGGCCCTGTTCGAAACTT 58.499 47.619 0.00 0.00 0.00 2.66
420 424 2.467566 TAGGCCCTGTTCGAAACTTC 57.532 50.000 0.00 0.00 0.00 3.01
421 425 0.250770 AGGCCCTGTTCGAAACTTCC 60.251 55.000 0.00 0.00 0.00 3.46
423 427 1.241990 GCCCTGTTCGAAACTTCCCC 61.242 60.000 0.00 0.00 0.00 4.81
424 428 0.953960 CCCTGTTCGAAACTTCCCCG 60.954 60.000 0.00 0.00 0.00 5.73
425 429 1.574702 CCTGTTCGAAACTTCCCCGC 61.575 60.000 0.00 0.00 0.00 6.13
427 431 0.601841 TGTTCGAAACTTCCCCGCTC 60.602 55.000 0.00 0.00 0.00 5.03
429 433 2.775032 TTCGAAACTTCCCCGCTCCG 62.775 60.000 0.00 0.00 0.00 4.63
430 434 2.346365 GAAACTTCCCCGCTCCGT 59.654 61.111 0.00 0.00 0.00 4.69
432 436 3.546714 AAACTTCCCCGCTCCGTGG 62.547 63.158 0.00 0.00 0.00 4.94
434 438 4.148825 CTTCCCCGCTCCGTGGAG 62.149 72.222 11.67 11.67 44.56 3.86
438 442 4.760047 CCCGCTCCGTGGAGTTGG 62.760 72.222 16.88 17.21 43.70 3.77
439 443 4.760047 CCGCTCCGTGGAGTTGGG 62.760 72.222 16.88 11.89 43.70 4.12
440 444 4.760047 CGCTCCGTGGAGTTGGGG 62.760 72.222 16.88 0.00 43.70 4.96
441 445 3.319198 GCTCCGTGGAGTTGGGGA 61.319 66.667 16.88 0.00 43.70 4.81
442 446 2.982130 CTCCGTGGAGTTGGGGAG 59.018 66.667 7.79 0.00 40.05 4.30
443 447 1.913762 CTCCGTGGAGTTGGGGAGT 60.914 63.158 7.79 0.00 40.91 3.85
444 448 1.460689 TCCGTGGAGTTGGGGAGTT 60.461 57.895 0.00 0.00 0.00 3.01
445 449 1.302511 CCGTGGAGTTGGGGAGTTG 60.303 63.158 0.00 0.00 0.00 3.16
446 450 1.302511 CGTGGAGTTGGGGAGTTGG 60.303 63.158 0.00 0.00 0.00 3.77
447 451 1.074951 GTGGAGTTGGGGAGTTGGG 59.925 63.158 0.00 0.00 0.00 4.12
448 452 1.386772 TGGAGTTGGGGAGTTGGGT 60.387 57.895 0.00 0.00 0.00 4.51
449 453 0.996762 TGGAGTTGGGGAGTTGGGTT 60.997 55.000 0.00 0.00 0.00 4.11
450 454 0.187606 GGAGTTGGGGAGTTGGGTTT 59.812 55.000 0.00 0.00 0.00 3.27
451 455 1.412505 GGAGTTGGGGAGTTGGGTTTT 60.413 52.381 0.00 0.00 0.00 2.43
452 456 1.686587 GAGTTGGGGAGTTGGGTTTTG 59.313 52.381 0.00 0.00 0.00 2.44
453 457 0.756294 GTTGGGGAGTTGGGTTTTGG 59.244 55.000 0.00 0.00 0.00 3.28
454 458 1.051556 TTGGGGAGTTGGGTTTTGGC 61.052 55.000 0.00 0.00 0.00 4.52
455 459 1.458588 GGGGAGTTGGGTTTTGGCA 60.459 57.895 0.00 0.00 0.00 4.92
456 460 1.471829 GGGGAGTTGGGTTTTGGCAG 61.472 60.000 0.00 0.00 0.00 4.85
457 461 1.367471 GGAGTTGGGTTTTGGCAGC 59.633 57.895 0.00 0.00 0.00 5.25
458 462 1.115326 GGAGTTGGGTTTTGGCAGCT 61.115 55.000 0.00 0.00 0.00 4.24
459 463 0.315251 GAGTTGGGTTTTGGCAGCTC 59.685 55.000 0.00 0.00 0.00 4.09
460 464 1.115326 AGTTGGGTTTTGGCAGCTCC 61.115 55.000 0.00 0.00 0.00 4.70
461 465 2.199652 TTGGGTTTTGGCAGCTCCG 61.200 57.895 0.00 0.00 37.80 4.63
462 466 4.056125 GGGTTTTGGCAGCTCCGC 62.056 66.667 0.00 0.00 37.80 5.54
472 476 0.588737 GCAGCTCCGCCTAATTAAGC 59.411 55.000 0.00 0.00 0.00 3.09
473 477 1.811941 GCAGCTCCGCCTAATTAAGCT 60.812 52.381 4.61 3.92 43.81 3.74
474 478 2.548067 GCAGCTCCGCCTAATTAAGCTA 60.548 50.000 8.02 0.00 41.19 3.32
475 479 3.728845 CAGCTCCGCCTAATTAAGCTAA 58.271 45.455 8.02 0.00 41.19 3.09
476 480 4.127171 CAGCTCCGCCTAATTAAGCTAAA 58.873 43.478 8.02 0.00 41.19 1.85
477 481 4.212214 CAGCTCCGCCTAATTAAGCTAAAG 59.788 45.833 8.02 2.73 41.19 1.85
478 482 4.101119 AGCTCCGCCTAATTAAGCTAAAGA 59.899 41.667 6.80 0.00 41.32 2.52
479 483 4.814771 GCTCCGCCTAATTAAGCTAAAGAA 59.185 41.667 4.61 0.00 0.00 2.52
480 484 5.470437 GCTCCGCCTAATTAAGCTAAAGAAT 59.530 40.000 4.61 0.00 0.00 2.40
481 485 6.566753 GCTCCGCCTAATTAAGCTAAAGAATG 60.567 42.308 4.61 0.00 0.00 2.67
482 486 5.763204 TCCGCCTAATTAAGCTAAAGAATGG 59.237 40.000 4.61 0.00 0.00 3.16
483 487 5.531287 CCGCCTAATTAAGCTAAAGAATGGT 59.469 40.000 4.61 0.00 0.00 3.55
484 488 6.293462 CCGCCTAATTAAGCTAAAGAATGGTC 60.293 42.308 4.61 0.00 0.00 4.02
485 489 6.293462 CGCCTAATTAAGCTAAAGAATGGTCC 60.293 42.308 4.61 0.00 0.00 4.46
486 490 6.293462 GCCTAATTAAGCTAAAGAATGGTCCG 60.293 42.308 0.00 0.00 0.00 4.79
487 491 5.500645 AATTAAGCTAAAGAATGGTCCGC 57.499 39.130 0.00 0.00 0.00 5.54
488 492 2.789409 AAGCTAAAGAATGGTCCGCT 57.211 45.000 0.00 0.00 0.00 5.52
489 493 2.317530 AGCTAAAGAATGGTCCGCTC 57.682 50.000 0.00 0.00 0.00 5.03
490 494 1.134371 AGCTAAAGAATGGTCCGCTCC 60.134 52.381 0.00 0.00 0.00 4.70
491 495 1.571919 CTAAAGAATGGTCCGCTCCG 58.428 55.000 0.00 0.00 0.00 4.63
505 509 3.291611 TCCGGGAGCGGAGTTAAC 58.708 61.111 0.00 0.00 33.62 2.01
506 510 2.202703 CCGGGAGCGGAGTTAACG 60.203 66.667 0.00 0.00 0.00 3.18
507 511 2.202703 CGGGAGCGGAGTTAACGG 60.203 66.667 0.00 0.00 0.00 4.44
508 512 2.703798 CGGGAGCGGAGTTAACGGA 61.704 63.158 0.00 0.00 0.00 4.69
509 513 1.141234 GGGAGCGGAGTTAACGGAG 59.859 63.158 0.00 0.00 0.00 4.63
510 514 1.518792 GGAGCGGAGTTAACGGAGC 60.519 63.158 12.19 12.19 0.00 4.70
511 515 1.214589 GAGCGGAGTTAACGGAGCA 59.785 57.895 18.99 0.00 0.00 4.26
512 516 0.802607 GAGCGGAGTTAACGGAGCAG 60.803 60.000 18.99 6.02 0.00 4.24
513 517 1.214589 GCGGAGTTAACGGAGCAGA 59.785 57.895 14.28 0.00 0.00 4.26
514 518 0.802607 GCGGAGTTAACGGAGCAGAG 60.803 60.000 14.28 0.00 0.00 3.35
515 519 0.809385 CGGAGTTAACGGAGCAGAGA 59.191 55.000 0.00 0.00 0.00 3.10
516 520 1.202200 CGGAGTTAACGGAGCAGAGAG 60.202 57.143 0.00 0.00 0.00 3.20
517 521 2.093106 GGAGTTAACGGAGCAGAGAGA 58.907 52.381 0.00 0.00 0.00 3.10
518 522 2.492484 GGAGTTAACGGAGCAGAGAGAA 59.508 50.000 0.00 0.00 0.00 2.87
519 523 3.056749 GGAGTTAACGGAGCAGAGAGAAA 60.057 47.826 0.00 0.00 0.00 2.52
520 524 3.915536 AGTTAACGGAGCAGAGAGAAAC 58.084 45.455 0.00 0.00 0.00 2.78
521 525 2.994578 GTTAACGGAGCAGAGAGAAACC 59.005 50.000 0.00 0.00 0.00 3.27
522 526 0.038159 AACGGAGCAGAGAGAAACCG 60.038 55.000 0.00 0.00 44.77 4.44
523 527 0.894184 ACGGAGCAGAGAGAAACCGA 60.894 55.000 0.00 0.00 42.40 4.69
524 528 0.243907 CGGAGCAGAGAGAAACCGAA 59.756 55.000 0.00 0.00 42.40 4.30
525 529 1.715993 GGAGCAGAGAGAAACCGAAC 58.284 55.000 0.00 0.00 0.00 3.95
526 530 1.000955 GGAGCAGAGAGAAACCGAACA 59.999 52.381 0.00 0.00 0.00 3.18
527 531 2.062519 GAGCAGAGAGAAACCGAACAC 58.937 52.381 0.00 0.00 0.00 3.32
528 532 1.412710 AGCAGAGAGAAACCGAACACA 59.587 47.619 0.00 0.00 0.00 3.72
529 533 1.795286 GCAGAGAGAAACCGAACACAG 59.205 52.381 0.00 0.00 0.00 3.66
530 534 1.795286 CAGAGAGAAACCGAACACAGC 59.205 52.381 0.00 0.00 0.00 4.40
531 535 1.149148 GAGAGAAACCGAACACAGCC 58.851 55.000 0.00 0.00 0.00 4.85
532 536 0.759346 AGAGAAACCGAACACAGCCT 59.241 50.000 0.00 0.00 0.00 4.58
533 537 1.141053 AGAGAAACCGAACACAGCCTT 59.859 47.619 0.00 0.00 0.00 4.35
534 538 2.367567 AGAGAAACCGAACACAGCCTTA 59.632 45.455 0.00 0.00 0.00 2.69
535 539 2.737252 GAGAAACCGAACACAGCCTTAG 59.263 50.000 0.00 0.00 0.00 2.18
536 540 2.104281 AGAAACCGAACACAGCCTTAGT 59.896 45.455 0.00 0.00 0.00 2.24
564 568 0.107703 CCGCATAGGCTTTGTCCAGA 60.108 55.000 6.81 0.00 38.10 3.86
566 570 1.009829 GCATAGGCTTTGTCCAGACG 58.990 55.000 6.81 0.00 36.96 4.18
567 571 1.656652 CATAGGCTTTGTCCAGACGG 58.343 55.000 0.00 0.00 0.00 4.79
568 572 1.207089 CATAGGCTTTGTCCAGACGGA 59.793 52.381 0.00 0.00 39.79 4.69
569 573 0.895530 TAGGCTTTGTCCAGACGGAG 59.104 55.000 0.00 0.00 43.99 4.63
570 574 2.035442 GGCTTTGTCCAGACGGAGC 61.035 63.158 13.69 13.69 43.99 4.70
571 575 2.035442 GCTTTGTCCAGACGGAGCC 61.035 63.158 11.88 0.00 43.99 4.70
572 576 1.674057 CTTTGTCCAGACGGAGCCT 59.326 57.895 0.00 0.00 43.99 4.58
573 577 0.390472 CTTTGTCCAGACGGAGCCTC 60.390 60.000 0.00 0.00 43.99 4.70
574 578 0.832135 TTTGTCCAGACGGAGCCTCT 60.832 55.000 0.00 0.00 43.99 3.69
575 579 1.536073 TTGTCCAGACGGAGCCTCTG 61.536 60.000 0.00 0.00 43.99 3.35
576 580 1.979693 GTCCAGACGGAGCCTCTGT 60.980 63.158 5.72 5.72 43.99 3.41
580 601 0.671781 CAGACGGAGCCTCTGTTTGG 60.672 60.000 14.79 1.82 35.83 3.28
619 640 5.850614 GGTACCTTCAAAGTAGTGACAAGA 58.149 41.667 4.06 0.00 0.00 3.02
620 641 5.927115 GGTACCTTCAAAGTAGTGACAAGAG 59.073 44.000 4.06 0.00 0.00 2.85
621 642 4.381411 ACCTTCAAAGTAGTGACAAGAGC 58.619 43.478 0.00 0.00 0.00 4.09
623 644 5.059833 CCTTCAAAGTAGTGACAAGAGCTT 58.940 41.667 0.00 0.00 0.00 3.74
626 647 4.100963 TCAAAGTAGTGACAAGAGCTTGGA 59.899 41.667 14.14 0.00 44.45 3.53
628 649 3.235200 AGTAGTGACAAGAGCTTGGACT 58.765 45.455 14.14 15.48 44.45 3.85
629 650 4.408276 AGTAGTGACAAGAGCTTGGACTA 58.592 43.478 14.14 14.66 44.45 2.59
630 651 4.833380 AGTAGTGACAAGAGCTTGGACTAA 59.167 41.667 18.24 7.33 44.45 2.24
631 652 4.689612 AGTGACAAGAGCTTGGACTAAA 57.310 40.909 14.14 0.00 44.45 1.85
632 653 5.234466 AGTGACAAGAGCTTGGACTAAAT 57.766 39.130 14.14 0.00 44.45 1.40
633 654 5.625150 AGTGACAAGAGCTTGGACTAAATT 58.375 37.500 14.14 0.00 44.45 1.82
634 655 5.703130 AGTGACAAGAGCTTGGACTAAATTC 59.297 40.000 14.14 1.70 44.45 2.17
635 656 5.003804 TGACAAGAGCTTGGACTAAATTCC 58.996 41.667 14.14 0.00 44.45 3.01
636 657 5.221925 TGACAAGAGCTTGGACTAAATTCCT 60.222 40.000 14.14 0.00 44.45 3.36
637 658 5.006386 ACAAGAGCTTGGACTAAATTCCTG 58.994 41.667 14.14 0.00 44.45 3.86
638 659 4.227864 AGAGCTTGGACTAAATTCCTGG 57.772 45.455 0.00 0.00 36.51 4.45
639 660 3.846588 AGAGCTTGGACTAAATTCCTGGA 59.153 43.478 0.00 0.00 36.51 3.86
640 661 4.080638 AGAGCTTGGACTAAATTCCTGGAG 60.081 45.833 0.00 0.00 36.51 3.86
641 662 3.054065 AGCTTGGACTAAATTCCTGGAGG 60.054 47.826 0.00 0.00 36.51 4.30
642 663 3.891049 CTTGGACTAAATTCCTGGAGGG 58.109 50.000 0.00 0.00 36.51 4.30
643 664 1.564348 TGGACTAAATTCCTGGAGGGC 59.436 52.381 0.00 0.00 36.51 5.19
644 665 1.475213 GGACTAAATTCCTGGAGGGCG 60.475 57.143 0.00 0.00 35.41 6.13
645 666 0.546598 ACTAAATTCCTGGAGGGCGG 59.453 55.000 0.00 0.00 35.41 6.13
646 667 0.546598 CTAAATTCCTGGAGGGCGGT 59.453 55.000 0.00 0.00 35.41 5.68
647 668 0.996583 TAAATTCCTGGAGGGCGGTT 59.003 50.000 0.00 0.00 35.41 4.44
648 669 0.611896 AAATTCCTGGAGGGCGGTTG 60.612 55.000 0.00 0.00 35.41 3.77
649 670 2.499303 AATTCCTGGAGGGCGGTTGG 62.499 60.000 0.00 0.00 35.41 3.77
668 689 3.966543 GTGGGGTGGGGTGAGGTG 61.967 72.222 0.00 0.00 0.00 4.00
673 694 3.966543 GTGGGGTGAGGTGGGGTG 61.967 72.222 0.00 0.00 0.00 4.61
699 1040 3.054361 GGATCTCAAGGCTACCTCCAAAA 60.054 47.826 0.00 0.00 30.89 2.44
705 1046 1.418637 AGGCTACCTCCAAAAACGTCA 59.581 47.619 0.00 0.00 0.00 4.35
709 1050 3.554337 GCTACCTCCAAAAACGTCAGAGA 60.554 47.826 0.00 0.00 0.00 3.10
713 1054 3.877508 CCTCCAAAAACGTCAGAGAGTTT 59.122 43.478 0.00 0.00 41.72 2.66
714 1055 5.054477 CCTCCAAAAACGTCAGAGAGTTTA 58.946 41.667 4.80 0.00 39.36 2.01
715 1056 5.177696 CCTCCAAAAACGTCAGAGAGTTTAG 59.822 44.000 4.80 2.37 39.36 1.85
716 1057 5.909477 TCCAAAAACGTCAGAGAGTTTAGA 58.091 37.500 4.80 1.61 39.36 2.10
717 1058 5.751990 TCCAAAAACGTCAGAGAGTTTAGAC 59.248 40.000 4.80 0.00 39.36 2.59
718 1059 5.522460 CCAAAAACGTCAGAGAGTTTAGACA 59.478 40.000 4.80 0.00 39.36 3.41
719 1060 6.202954 CCAAAAACGTCAGAGAGTTTAGACAT 59.797 38.462 4.80 0.00 39.36 3.06
720 1061 7.284351 CAAAAACGTCAGAGAGTTTAGACATC 58.716 38.462 4.80 0.00 39.36 3.06
721 1062 5.968528 AACGTCAGAGAGTTTAGACATCT 57.031 39.130 0.00 0.00 0.00 2.90
722 1063 5.303747 ACGTCAGAGAGTTTAGACATCTG 57.696 43.478 10.63 10.63 40.47 2.90
723 1064 4.762765 ACGTCAGAGAGTTTAGACATCTGT 59.237 41.667 14.41 0.00 40.23 3.41
724 1065 5.106475 ACGTCAGAGAGTTTAGACATCTGTC 60.106 44.000 14.41 2.01 45.08 3.51
788 1137 1.670811 CTATCGTTGTTCACCATGGCC 59.329 52.381 13.04 0.00 0.00 5.36
792 1141 0.519961 GTTGTTCACCATGGCCGTAC 59.480 55.000 13.04 8.09 0.00 3.67
869 1479 1.752694 CCGCAATTCCCCAATCCGT 60.753 57.895 0.00 0.00 0.00 4.69
889 1499 2.674796 ATCGACTGGTAGCTGAAACC 57.325 50.000 5.76 0.00 37.53 3.27
919 1530 3.090532 CACCCCCTACCTCCTGCC 61.091 72.222 0.00 0.00 0.00 4.85
930 1541 2.683933 TCCTGCCTTCGTCCTCCC 60.684 66.667 0.00 0.00 0.00 4.30
985 1666 1.500474 CTCAAGATCCAGGCAGGGTA 58.500 55.000 0.00 0.00 38.24 3.69
1029 1710 2.105128 GAGTGCGGCTGCTACGAT 59.895 61.111 20.27 0.00 43.34 3.73
1251 1932 0.175989 CCTTCGCCTACAACCTCTCC 59.824 60.000 0.00 0.00 0.00 3.71
1311 1998 4.335647 AGGAACACCCAGCCGCTG 62.336 66.667 13.82 13.82 37.41 5.18
1682 2377 6.320418 TGCTAGTCATTACTAAGATTCGTGGA 59.680 38.462 0.00 0.00 37.75 4.02
1683 2378 7.014326 TGCTAGTCATTACTAAGATTCGTGGAT 59.986 37.037 0.00 0.00 37.75 3.41
1686 2381 8.649973 AGTCATTACTAAGATTCGTGGATTTC 57.350 34.615 0.00 0.00 32.84 2.17
1694 2389 5.073311 AGATTCGTGGATTTCTTTCTCGA 57.927 39.130 0.00 0.00 0.00 4.04
1695 2390 5.105752 AGATTCGTGGATTTCTTTCTCGAG 58.894 41.667 5.93 5.93 0.00 4.04
1696 2391 2.607187 TCGTGGATTTCTTTCTCGAGC 58.393 47.619 7.81 0.00 0.00 5.03
1697 2392 2.029380 TCGTGGATTTCTTTCTCGAGCA 60.029 45.455 7.81 0.00 0.00 4.26
1699 2394 3.372206 CGTGGATTTCTTTCTCGAGCAAT 59.628 43.478 7.81 0.65 0.00 3.56
1700 2395 4.142816 CGTGGATTTCTTTCTCGAGCAATT 60.143 41.667 7.81 0.00 0.00 2.32
1701 2396 5.617751 CGTGGATTTCTTTCTCGAGCAATTT 60.618 40.000 7.81 0.00 0.00 1.82
1702 2397 6.152379 GTGGATTTCTTTCTCGAGCAATTTT 58.848 36.000 7.81 0.00 0.00 1.82
1703 2398 7.305474 GTGGATTTCTTTCTCGAGCAATTTTA 58.695 34.615 7.81 0.00 0.00 1.52
1704 2399 7.483059 GTGGATTTCTTTCTCGAGCAATTTTAG 59.517 37.037 7.81 0.00 0.00 1.85
1705 2400 7.174946 TGGATTTCTTTCTCGAGCAATTTTAGT 59.825 33.333 7.81 0.00 0.00 2.24
1706 2401 8.665685 GGATTTCTTTCTCGAGCAATTTTAGTA 58.334 33.333 7.81 0.00 0.00 1.82
1707 2402 9.695884 GATTTCTTTCTCGAGCAATTTTAGTAG 57.304 33.333 7.81 0.00 0.00 2.57
1708 2403 8.603242 TTTCTTTCTCGAGCAATTTTAGTAGT 57.397 30.769 7.81 0.00 0.00 2.73
1709 2404 7.582435 TCTTTCTCGAGCAATTTTAGTAGTG 57.418 36.000 7.81 0.00 0.00 2.74
1710 2405 7.375834 TCTTTCTCGAGCAATTTTAGTAGTGA 58.624 34.615 7.81 0.00 0.00 3.41
1711 2406 8.035394 TCTTTCTCGAGCAATTTTAGTAGTGAT 58.965 33.333 7.81 0.00 0.00 3.06
1712 2407 8.547967 TTTCTCGAGCAATTTTAGTAGTGATT 57.452 30.769 7.81 0.00 0.00 2.57
1765 3434 3.559171 GGAACCAACTGCAGGTAGATTGA 60.559 47.826 19.93 0.00 38.76 2.57
1792 3465 5.183713 CCATTGGTATGCACTTTTCTTCTGA 59.816 40.000 0.00 0.00 0.00 3.27
1793 3466 5.947228 TTGGTATGCACTTTTCTTCTGAG 57.053 39.130 0.00 0.00 0.00 3.35
1829 3504 8.134895 CCAAGTAGATTAGTGTTTCAGCAAAAA 58.865 33.333 0.00 0.00 0.00 1.94
1865 3540 4.525912 AATCCCTTGATTGTTCTTGTGC 57.474 40.909 0.00 0.00 39.74 4.57
1891 3567 3.054139 ACCATCTTGGCTATCTTGCTGAA 60.054 43.478 0.00 0.00 42.67 3.02
1892 3568 4.142790 CCATCTTGGCTATCTTGCTGAAT 58.857 43.478 0.00 0.00 0.00 2.57
1894 3570 5.944599 CCATCTTGGCTATCTTGCTGAATAT 59.055 40.000 0.00 0.00 0.00 1.28
1895 3571 6.093771 CCATCTTGGCTATCTTGCTGAATATC 59.906 42.308 0.00 0.00 0.00 1.63
1897 3573 6.835174 TCTTGGCTATCTTGCTGAATATCTT 58.165 36.000 0.00 0.00 0.00 2.40
1898 3574 6.709397 TCTTGGCTATCTTGCTGAATATCTTG 59.291 38.462 0.00 0.00 0.00 3.02
1900 3576 5.761726 TGGCTATCTTGCTGAATATCTTGTG 59.238 40.000 0.00 0.00 0.00 3.33
1902 3578 5.334724 GCTATCTTGCTGAATATCTTGTGCC 60.335 44.000 0.00 0.00 0.00 5.01
1911 5108 5.499313 TGAATATCTTGTGCCTCATGAACA 58.501 37.500 0.00 0.00 34.65 3.18
1928 5125 9.761504 CTCATGAACACAGATTATGATAGAACT 57.238 33.333 0.00 0.00 0.00 3.01
1943 5140 7.421530 TGATAGAACTTGTGAACTAGCAAAC 57.578 36.000 0.00 0.00 30.29 2.93
2041 5242 0.890996 GTTCCAGGGAGCACCAACAG 60.891 60.000 1.58 0.00 43.89 3.16
2133 5344 5.867903 TTTTCCCATGAAAACATGACAGT 57.132 34.783 11.10 0.00 43.68 3.55
2140 5351 7.031372 CCCATGAAAACATGACAGTTATTCAG 58.969 38.462 11.10 0.00 34.85 3.02
2141 5352 7.309377 CCCATGAAAACATGACAGTTATTCAGT 60.309 37.037 11.10 0.00 34.85 3.41
2142 5353 8.729756 CCATGAAAACATGACAGTTATTCAGTA 58.270 33.333 11.10 0.00 34.85 2.74
2206 5442 1.979855 TTTCACCAGTGTCACCATGG 58.020 50.000 11.19 11.19 40.10 3.66
2220 5456 3.072330 TCACCATGGCAGACAAGAAACTA 59.928 43.478 13.04 0.00 0.00 2.24
2221 5457 4.012374 CACCATGGCAGACAAGAAACTAT 58.988 43.478 13.04 0.00 0.00 2.12
2223 5459 3.181493 CCATGGCAGACAAGAAACTATGC 60.181 47.826 0.00 0.00 0.00 3.14
2231 5513 6.546395 CAGACAAGAAACTATGCCAATGTAC 58.454 40.000 0.00 0.00 0.00 2.90
2236 5521 6.178239 AGAAACTATGCCAATGTACGTTTC 57.822 37.500 0.00 3.69 39.11 2.78
2242 5527 2.746904 TGCCAATGTACGTTTCAGATGG 59.253 45.455 16.34 16.34 0.00 3.51
2268 5553 3.997762 ACGCAAATGTACAGTCCACTTA 58.002 40.909 0.33 0.00 0.00 2.24
2371 5668 5.363580 AGTCATCAAATATTCCCCGCAATTT 59.636 36.000 0.00 0.00 0.00 1.82
2423 5720 7.119699 CCAGCACACTTTGATTAATCTCTAACA 59.880 37.037 16.24 0.00 0.00 2.41
2461 5758 1.473080 GCAACAATTGGGCACACACTT 60.473 47.619 16.59 0.00 0.00 3.16
2477 5774 5.065859 CACACACTTTGTTATCACAGACCAA 59.934 40.000 0.00 0.00 35.67 3.67
2525 5822 1.667722 CAAGCAGGCCCTCCAAAAC 59.332 57.895 0.00 0.00 33.74 2.43
2542 5839 3.365265 CCTGCCCAGCCGACAAAC 61.365 66.667 0.00 0.00 0.00 2.93
2550 5847 2.035832 CCCAGCCGACAAACATTTTCTT 59.964 45.455 0.00 0.00 0.00 2.52
2558 5855 4.692228 GACAAACATTTTCTTTGCTCCCA 58.308 39.130 0.00 0.00 32.71 4.37
2561 5858 5.104982 ACAAACATTTTCTTTGCTCCCAAGA 60.105 36.000 0.00 0.00 32.71 3.02
2566 5863 2.260844 TCTTTGCTCCCAAGACTGTG 57.739 50.000 0.00 0.00 31.52 3.66
2570 5867 1.072159 GCTCCCAAGACTGTGCACT 59.928 57.895 19.41 0.00 0.00 4.40
2585 5882 1.220206 CACTCCAGCAGGCTACAGG 59.780 63.158 0.00 0.00 33.74 4.00
2598 5895 1.404181 GCTACAGGCATGAACTCGTCA 60.404 52.381 4.84 0.00 41.67 4.35
2601 5898 2.571212 ACAGGCATGAACTCGTCAAAA 58.429 42.857 4.84 0.00 40.50 2.44
2606 5903 3.189287 GGCATGAACTCGTCAAAACTCAT 59.811 43.478 0.00 0.00 40.50 2.90
2607 5904 4.320494 GGCATGAACTCGTCAAAACTCATT 60.320 41.667 0.00 0.00 40.50 2.57
2631 5928 1.810755 GGACTTCCCAACTAAAAGCCG 59.189 52.381 0.00 0.00 34.14 5.52
2651 5948 3.483421 CGAAGGGGACAAGTAAAAACCT 58.517 45.455 0.00 0.00 0.00 3.50
2652 5949 4.644498 CGAAGGGGACAAGTAAAAACCTA 58.356 43.478 0.00 0.00 0.00 3.08
2653 5950 5.250982 CGAAGGGGACAAGTAAAAACCTAT 58.749 41.667 0.00 0.00 0.00 2.57
2654 5951 5.708697 CGAAGGGGACAAGTAAAAACCTATT 59.291 40.000 0.00 0.00 0.00 1.73
2655 5952 6.349033 CGAAGGGGACAAGTAAAAACCTATTG 60.349 42.308 0.00 0.00 0.00 1.90
2656 5953 4.770531 AGGGGACAAGTAAAAACCTATTGC 59.229 41.667 0.00 0.00 0.00 3.56
2657 5954 4.525100 GGGGACAAGTAAAAACCTATTGCA 59.475 41.667 0.00 0.00 0.00 4.08
2658 5955 5.011227 GGGGACAAGTAAAAACCTATTGCAA 59.989 40.000 0.00 0.00 0.00 4.08
2659 5956 5.924254 GGGACAAGTAAAAACCTATTGCAAC 59.076 40.000 0.00 0.00 0.00 4.17
2660 5957 5.924254 GGACAAGTAAAAACCTATTGCAACC 59.076 40.000 0.00 0.00 0.00 3.77
2661 5958 6.239204 GGACAAGTAAAAACCTATTGCAACCT 60.239 38.462 0.00 0.00 0.00 3.50
2662 5959 6.512297 ACAAGTAAAAACCTATTGCAACCTG 58.488 36.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.554129 GGGGAAAACTTCGAATTGGTTGG 60.554 47.826 0.00 0.00 0.00 3.77
11 12 4.743151 GTGATTTTCGTTGGGGAAAACTTC 59.257 41.667 2.91 0.05 45.58 3.01
16 17 6.658188 AAATAGTGATTTTCGTTGGGGAAA 57.342 33.333 0.00 0.00 30.77 3.13
18 19 5.770663 TCAAAATAGTGATTTTCGTTGGGGA 59.229 36.000 0.00 0.00 42.22 4.81
19 20 5.861787 GTCAAAATAGTGATTTTCGTTGGGG 59.138 40.000 0.00 0.00 42.22 4.96
51 53 3.623510 GGTTAGAGCATACCTGACTTTGC 59.376 47.826 0.00 0.00 35.34 3.68
58 60 1.807814 AGGGGGTTAGAGCATACCTG 58.192 55.000 0.00 0.00 34.75 4.00
60 62 2.104963 CAGAAGGGGGTTAGAGCATACC 59.895 54.545 0.00 0.00 0.00 2.73
90 92 0.681733 AATCGAGGGTCGGATCATGG 59.318 55.000 0.00 0.00 40.88 3.66
97 99 1.653115 CGGTAGAATCGAGGGTCGG 59.347 63.158 0.00 0.00 40.88 4.79
98 100 1.008767 GCGGTAGAATCGAGGGTCG 60.009 63.158 0.00 0.00 42.10 4.79
120 122 2.620115 TCATTAACCCTACTAGCGTCGG 59.380 50.000 0.00 0.00 0.00 4.79
123 125 5.068329 GGTAACTCATTAACCCTACTAGCGT 59.932 44.000 0.00 0.00 0.00 5.07
124 126 5.068198 TGGTAACTCATTAACCCTACTAGCG 59.932 44.000 0.00 0.00 37.61 4.26
128 130 5.095809 TGGTGGTAACTCATTAACCCTACT 58.904 41.667 0.00 0.00 37.61 2.57
177 179 1.344942 GCAGCTACAGACCGAACGTG 61.345 60.000 0.00 0.00 0.00 4.49
188 190 3.055458 TGTTAGCATGGTAAGCAGCTACA 60.055 43.478 17.35 8.25 39.11 2.74
237 241 1.889829 CCTTTTAACCCATCGCCAACA 59.110 47.619 0.00 0.00 0.00 3.33
238 242 1.403647 GCCTTTTAACCCATCGCCAAC 60.404 52.381 0.00 0.00 0.00 3.77
244 248 3.053917 TGGAGGTAGCCTTTTAACCCATC 60.054 47.826 0.00 0.00 31.76 3.51
246 250 2.350419 TGGAGGTAGCCTTTTAACCCA 58.650 47.619 0.00 0.00 31.76 4.51
251 255 3.325716 ACGTCTTTGGAGGTAGCCTTTTA 59.674 43.478 0.00 0.00 38.57 1.52
255 259 0.896226 GACGTCTTTGGAGGTAGCCT 59.104 55.000 8.70 0.00 40.14 4.58
258 262 2.352814 CCACAGACGTCTTTGGAGGTAG 60.353 54.545 36.73 16.81 44.52 3.18
310 314 0.252467 AGTTAGCTCTGCCCCTGTCT 60.252 55.000 0.00 0.00 0.00 3.41
312 316 1.268283 GGAGTTAGCTCTGCCCCTGT 61.268 60.000 6.54 0.00 41.38 4.00
320 324 1.127343 GGATGCTGGGAGTTAGCTCT 58.873 55.000 6.54 0.00 41.66 4.09
344 348 0.813210 AGAGCAGCTTAGGCAATCGC 60.813 55.000 0.00 0.00 41.70 4.58
401 405 1.002773 GGAAGTTTCGAACAGGGCCTA 59.997 52.381 5.28 0.00 0.00 3.93
404 408 1.241990 GGGGAAGTTTCGAACAGGGC 61.242 60.000 0.00 0.00 0.00 5.19
405 409 0.953960 CGGGGAAGTTTCGAACAGGG 60.954 60.000 0.00 0.00 0.00 4.45
406 410 1.574702 GCGGGGAAGTTTCGAACAGG 61.575 60.000 0.00 0.00 0.00 4.00
407 411 0.602905 AGCGGGGAAGTTTCGAACAG 60.603 55.000 0.00 0.00 0.00 3.16
408 412 0.601841 GAGCGGGGAAGTTTCGAACA 60.602 55.000 0.00 0.00 0.00 3.18
409 413 1.296755 GGAGCGGGGAAGTTTCGAAC 61.297 60.000 0.00 0.00 0.00 3.95
411 415 2.660802 GGAGCGGGGAAGTTTCGA 59.339 61.111 0.00 0.00 0.00 3.71
412 416 2.813908 CGGAGCGGGGAAGTTTCG 60.814 66.667 0.00 0.00 0.00 3.46
413 417 2.033194 CACGGAGCGGGGAAGTTTC 61.033 63.158 0.00 0.00 0.00 2.78
414 418 2.032071 CACGGAGCGGGGAAGTTT 59.968 61.111 0.00 0.00 0.00 2.66
421 425 4.760047 CCAACTCCACGGAGCGGG 62.760 72.222 13.16 10.66 45.54 6.13
423 427 4.760047 CCCCAACTCCACGGAGCG 62.760 72.222 13.16 4.69 45.54 5.03
424 428 3.316573 CTCCCCAACTCCACGGAGC 62.317 68.421 13.16 0.00 45.54 4.70
425 429 1.481056 AACTCCCCAACTCCACGGAG 61.481 60.000 11.67 11.67 46.18 4.63
427 431 1.302511 CAACTCCCCAACTCCACGG 60.303 63.158 0.00 0.00 0.00 4.94
429 433 1.074951 CCCAACTCCCCAACTCCAC 59.925 63.158 0.00 0.00 0.00 4.02
430 434 0.996762 AACCCAACTCCCCAACTCCA 60.997 55.000 0.00 0.00 0.00 3.86
432 436 1.686587 CAAAACCCAACTCCCCAACTC 59.313 52.381 0.00 0.00 0.00 3.01
433 437 1.691163 CCAAAACCCAACTCCCCAACT 60.691 52.381 0.00 0.00 0.00 3.16
434 438 0.756294 CCAAAACCCAACTCCCCAAC 59.244 55.000 0.00 0.00 0.00 3.77
435 439 1.051556 GCCAAAACCCAACTCCCCAA 61.052 55.000 0.00 0.00 0.00 4.12
438 442 2.049435 CTGCCAAAACCCAACTCCC 58.951 57.895 0.00 0.00 0.00 4.30
439 443 1.115326 AGCTGCCAAAACCCAACTCC 61.115 55.000 0.00 0.00 0.00 3.85
440 444 0.315251 GAGCTGCCAAAACCCAACTC 59.685 55.000 0.00 0.00 0.00 3.01
441 445 1.115326 GGAGCTGCCAAAACCCAACT 61.115 55.000 0.00 0.00 36.34 3.16
442 446 1.367471 GGAGCTGCCAAAACCCAAC 59.633 57.895 0.00 0.00 36.34 3.77
443 447 2.199652 CGGAGCTGCCAAAACCCAA 61.200 57.895 0.00 0.00 35.94 4.12
444 448 2.597217 CGGAGCTGCCAAAACCCA 60.597 61.111 0.00 0.00 35.94 4.51
457 461 6.073003 CCATTCTTTAGCTTAATTAGGCGGAG 60.073 42.308 13.28 12.02 33.04 4.63
458 462 5.763204 CCATTCTTTAGCTTAATTAGGCGGA 59.237 40.000 13.28 8.23 33.04 5.54
459 463 5.531287 ACCATTCTTTAGCTTAATTAGGCGG 59.469 40.000 13.28 8.66 33.04 6.13
460 464 6.293462 GGACCATTCTTTAGCTTAATTAGGCG 60.293 42.308 13.28 0.52 33.04 5.52
461 465 6.293462 CGGACCATTCTTTAGCTTAATTAGGC 60.293 42.308 11.42 11.42 0.00 3.93
462 466 6.293462 GCGGACCATTCTTTAGCTTAATTAGG 60.293 42.308 0.00 0.00 0.00 2.69
463 467 6.483640 AGCGGACCATTCTTTAGCTTAATTAG 59.516 38.462 0.00 0.00 0.00 1.73
464 468 6.354130 AGCGGACCATTCTTTAGCTTAATTA 58.646 36.000 0.00 0.00 0.00 1.40
465 469 5.193679 AGCGGACCATTCTTTAGCTTAATT 58.806 37.500 0.00 0.00 0.00 1.40
466 470 4.781934 AGCGGACCATTCTTTAGCTTAAT 58.218 39.130 0.00 0.00 0.00 1.40
467 471 4.189231 GAGCGGACCATTCTTTAGCTTAA 58.811 43.478 0.00 0.00 33.26 1.85
468 472 3.431766 GGAGCGGACCATTCTTTAGCTTA 60.432 47.826 0.00 0.00 33.26 3.09
469 473 2.633488 GAGCGGACCATTCTTTAGCTT 58.367 47.619 0.00 0.00 33.26 3.74
470 474 1.134371 GGAGCGGACCATTCTTTAGCT 60.134 52.381 0.00 0.00 36.06 3.32
471 475 1.300481 GGAGCGGACCATTCTTTAGC 58.700 55.000 0.00 0.00 0.00 3.09
472 476 1.571919 CGGAGCGGACCATTCTTTAG 58.428 55.000 0.00 0.00 0.00 1.85
473 477 3.752796 CGGAGCGGACCATTCTTTA 57.247 52.632 0.00 0.00 0.00 1.85
474 478 4.617875 CGGAGCGGACCATTCTTT 57.382 55.556 0.00 0.00 0.00 2.52
490 494 2.202703 CCGTTAACTCCGCTCCCG 60.203 66.667 3.71 0.00 0.00 5.14
491 495 1.141234 CTCCGTTAACTCCGCTCCC 59.859 63.158 3.71 0.00 0.00 4.30
492 496 1.518792 GCTCCGTTAACTCCGCTCC 60.519 63.158 3.71 0.00 0.00 4.70
493 497 0.802607 CTGCTCCGTTAACTCCGCTC 60.803 60.000 3.71 0.00 0.00 5.03
494 498 1.215647 CTGCTCCGTTAACTCCGCT 59.784 57.895 3.71 0.00 0.00 5.52
495 499 0.802607 CTCTGCTCCGTTAACTCCGC 60.803 60.000 3.71 3.74 0.00 5.54
496 500 0.809385 TCTCTGCTCCGTTAACTCCG 59.191 55.000 3.71 0.00 0.00 4.63
497 501 2.093106 TCTCTCTGCTCCGTTAACTCC 58.907 52.381 3.71 0.00 0.00 3.85
498 502 3.851976 TTCTCTCTGCTCCGTTAACTC 57.148 47.619 3.71 0.00 0.00 3.01
499 503 3.306156 GGTTTCTCTCTGCTCCGTTAACT 60.306 47.826 3.71 0.00 0.00 2.24
500 504 2.994578 GGTTTCTCTCTGCTCCGTTAAC 59.005 50.000 0.00 0.00 0.00 2.01
501 505 2.352421 CGGTTTCTCTCTGCTCCGTTAA 60.352 50.000 0.00 0.00 34.38 2.01
502 506 1.201647 CGGTTTCTCTCTGCTCCGTTA 59.798 52.381 0.00 0.00 34.38 3.18
503 507 0.038159 CGGTTTCTCTCTGCTCCGTT 60.038 55.000 0.00 0.00 34.38 4.44
504 508 0.894184 TCGGTTTCTCTCTGCTCCGT 60.894 55.000 0.00 0.00 39.14 4.69
505 509 0.243907 TTCGGTTTCTCTCTGCTCCG 59.756 55.000 0.00 0.00 39.40 4.63
506 510 1.000955 TGTTCGGTTTCTCTCTGCTCC 59.999 52.381 0.00 0.00 0.00 4.70
507 511 2.062519 GTGTTCGGTTTCTCTCTGCTC 58.937 52.381 0.00 0.00 0.00 4.26
508 512 1.412710 TGTGTTCGGTTTCTCTCTGCT 59.587 47.619 0.00 0.00 0.00 4.24
509 513 1.795286 CTGTGTTCGGTTTCTCTCTGC 59.205 52.381 0.00 0.00 0.00 4.26
510 514 1.795286 GCTGTGTTCGGTTTCTCTCTG 59.205 52.381 0.00 0.00 0.00 3.35
511 515 1.270358 GGCTGTGTTCGGTTTCTCTCT 60.270 52.381 0.00 0.00 0.00 3.10
512 516 1.149148 GGCTGTGTTCGGTTTCTCTC 58.851 55.000 0.00 0.00 0.00 3.20
513 517 0.759346 AGGCTGTGTTCGGTTTCTCT 59.241 50.000 0.00 0.00 0.00 3.10
514 518 1.594331 AAGGCTGTGTTCGGTTTCTC 58.406 50.000 0.00 0.00 0.00 2.87
515 519 2.104281 ACTAAGGCTGTGTTCGGTTTCT 59.896 45.455 0.00 0.00 0.00 2.52
516 520 2.490991 ACTAAGGCTGTGTTCGGTTTC 58.509 47.619 0.00 0.00 0.00 2.78
517 521 2.632987 ACTAAGGCTGTGTTCGGTTT 57.367 45.000 0.00 0.00 0.00 3.27
518 522 3.596214 CATACTAAGGCTGTGTTCGGTT 58.404 45.455 0.00 0.00 0.00 4.44
519 523 2.677037 GCATACTAAGGCTGTGTTCGGT 60.677 50.000 0.00 0.00 0.00 4.69
520 524 1.933853 GCATACTAAGGCTGTGTTCGG 59.066 52.381 0.00 0.00 0.00 4.30
521 525 2.616960 TGCATACTAAGGCTGTGTTCG 58.383 47.619 0.00 0.00 32.35 3.95
522 526 4.212214 GCTATGCATACTAAGGCTGTGTTC 59.788 45.833 1.16 0.00 32.35 3.18
523 527 4.130118 GCTATGCATACTAAGGCTGTGTT 58.870 43.478 1.16 0.00 32.35 3.32
524 528 3.495100 GGCTATGCATACTAAGGCTGTGT 60.495 47.826 12.26 0.00 32.35 3.72
525 529 3.070018 GGCTATGCATACTAAGGCTGTG 58.930 50.000 12.26 0.00 32.35 3.66
526 530 2.289072 CGGCTATGCATACTAAGGCTGT 60.289 50.000 16.13 0.00 32.35 4.40
527 531 2.341257 CGGCTATGCATACTAAGGCTG 58.659 52.381 16.13 12.52 32.35 4.85
528 532 1.338200 GCGGCTATGCATACTAAGGCT 60.338 52.381 16.13 0.00 32.35 4.58
529 533 1.079503 GCGGCTATGCATACTAAGGC 58.920 55.000 1.16 6.50 34.15 4.35
530 534 2.455674 TGCGGCTATGCATACTAAGG 57.544 50.000 1.16 0.00 40.62 2.69
561 565 0.671781 CCAAACAGAGGCTCCGTCTG 60.672 60.000 11.71 3.78 45.94 3.51
564 568 1.071471 CACCAAACAGAGGCTCCGT 59.929 57.895 11.71 3.71 0.00 4.69
566 570 0.690762 TACCACCAAACAGAGGCTCC 59.309 55.000 11.71 0.00 0.00 4.70
567 571 1.339151 CCTACCACCAAACAGAGGCTC 60.339 57.143 6.34 6.34 0.00 4.70
568 572 0.693049 CCTACCACCAAACAGAGGCT 59.307 55.000 0.00 0.00 0.00 4.58
569 573 0.322546 CCCTACCACCAAACAGAGGC 60.323 60.000 0.00 0.00 0.00 4.70
570 574 1.003233 GACCCTACCACCAAACAGAGG 59.997 57.143 0.00 0.00 0.00 3.69
571 575 1.978580 AGACCCTACCACCAAACAGAG 59.021 52.381 0.00 0.00 0.00 3.35
572 576 2.105821 CAAGACCCTACCACCAAACAGA 59.894 50.000 0.00 0.00 0.00 3.41
573 577 2.105821 TCAAGACCCTACCACCAAACAG 59.894 50.000 0.00 0.00 0.00 3.16
574 578 2.105821 CTCAAGACCCTACCACCAAACA 59.894 50.000 0.00 0.00 0.00 2.83
575 579 2.552373 CCTCAAGACCCTACCACCAAAC 60.552 54.545 0.00 0.00 0.00 2.93
576 580 1.702957 CCTCAAGACCCTACCACCAAA 59.297 52.381 0.00 0.00 0.00 3.28
580 601 1.829849 GTACCCTCAAGACCCTACCAC 59.170 57.143 0.00 0.00 0.00 4.16
609 630 5.801531 TTTAGTCCAAGCTCTTGTCACTA 57.198 39.130 8.60 10.35 38.85 2.74
617 638 3.846588 TCCAGGAATTTAGTCCAAGCTCT 59.153 43.478 0.00 0.00 40.48 4.09
618 639 4.195416 CTCCAGGAATTTAGTCCAAGCTC 58.805 47.826 0.00 0.00 40.48 4.09
619 640 3.054065 CCTCCAGGAATTTAGTCCAAGCT 60.054 47.826 0.00 0.00 40.48 3.74
620 641 3.282885 CCTCCAGGAATTTAGTCCAAGC 58.717 50.000 0.00 0.00 40.48 4.01
621 642 3.891049 CCCTCCAGGAATTTAGTCCAAG 58.109 50.000 0.00 0.00 40.48 3.61
623 644 1.564348 GCCCTCCAGGAATTTAGTCCA 59.436 52.381 0.00 0.00 40.48 4.02
626 647 0.546598 CCGCCCTCCAGGAATTTAGT 59.453 55.000 0.00 0.00 38.24 2.24
628 649 0.996583 AACCGCCCTCCAGGAATTTA 59.003 50.000 0.00 0.00 38.24 1.40
629 650 0.611896 CAACCGCCCTCCAGGAATTT 60.612 55.000 0.00 0.00 38.24 1.82
630 651 1.000896 CAACCGCCCTCCAGGAATT 60.001 57.895 0.00 0.00 38.24 2.17
631 652 2.677228 CAACCGCCCTCCAGGAAT 59.323 61.111 0.00 0.00 38.24 3.01
632 653 3.646715 CCAACCGCCCTCCAGGAA 61.647 66.667 0.00 0.00 38.24 3.36
651 672 3.966543 CACCTCACCCCACCCCAC 61.967 72.222 0.00 0.00 0.00 4.61
656 677 3.966543 CACCCCACCTCACCCCAC 61.967 72.222 0.00 0.00 0.00 4.61
674 695 0.400670 AGGTAGCCTTGAGATCCCCC 60.401 60.000 0.00 0.00 0.00 5.40
675 696 1.052617 GAGGTAGCCTTGAGATCCCC 58.947 60.000 0.00 0.00 31.76 4.81
676 697 1.052617 GGAGGTAGCCTTGAGATCCC 58.947 60.000 0.00 0.00 31.76 3.85
688 1029 4.238514 CTCTCTGACGTTTTTGGAGGTAG 58.761 47.826 0.00 0.00 0.00 3.18
699 1040 5.241949 ACAGATGTCTAAACTCTCTGACGTT 59.758 40.000 4.98 0.00 38.33 3.99
705 1046 4.762765 ACGTGACAGATGTCTAAACTCTCT 59.237 41.667 13.74 0.00 44.99 3.10
709 1050 8.495949 CATTTTTACGTGACAGATGTCTAAACT 58.504 33.333 13.74 0.28 44.99 2.66
713 1054 6.460781 ACCATTTTTACGTGACAGATGTCTA 58.539 36.000 13.74 0.00 44.99 2.59
714 1055 5.305585 ACCATTTTTACGTGACAGATGTCT 58.694 37.500 13.74 0.00 44.99 3.41
715 1056 5.178623 TGACCATTTTTACGTGACAGATGTC 59.821 40.000 6.01 6.01 44.97 3.06
716 1057 5.060506 TGACCATTTTTACGTGACAGATGT 58.939 37.500 0.00 0.00 0.00 3.06
717 1058 5.605564 TGACCATTTTTACGTGACAGATG 57.394 39.130 0.00 0.00 0.00 2.90
718 1059 4.154195 GCTGACCATTTTTACGTGACAGAT 59.846 41.667 0.00 0.00 0.00 2.90
719 1060 3.496884 GCTGACCATTTTTACGTGACAGA 59.503 43.478 0.00 0.00 0.00 3.41
720 1061 3.664276 CGCTGACCATTTTTACGTGACAG 60.664 47.826 0.00 0.00 0.00 3.51
721 1062 2.222213 CGCTGACCATTTTTACGTGACA 59.778 45.455 0.00 0.00 0.00 3.58
722 1063 2.412325 CCGCTGACCATTTTTACGTGAC 60.412 50.000 0.00 0.00 0.00 3.67
723 1064 1.801771 CCGCTGACCATTTTTACGTGA 59.198 47.619 0.00 0.00 0.00 4.35
724 1065 1.801771 TCCGCTGACCATTTTTACGTG 59.198 47.619 0.00 0.00 0.00 4.49
725 1066 1.802365 GTCCGCTGACCATTTTTACGT 59.198 47.619 0.00 0.00 35.34 3.57
726 1067 1.801771 TGTCCGCTGACCATTTTTACG 59.198 47.619 5.77 0.00 41.01 3.18
727 1068 3.427503 CCATGTCCGCTGACCATTTTTAC 60.428 47.826 5.77 0.00 41.01 2.01
728 1069 2.752354 CCATGTCCGCTGACCATTTTTA 59.248 45.455 5.77 0.00 41.01 1.52
755 1104 1.813859 CGATAGCCTCGGTCCACAA 59.186 57.895 0.00 0.00 43.82 3.33
774 1123 0.951525 CGTACGGCCATGGTGAACAA 60.952 55.000 14.67 0.00 0.00 2.83
776 1125 2.746803 GCGTACGGCCATGGTGAAC 61.747 63.158 18.39 6.13 34.80 3.18
777 1126 2.435234 GCGTACGGCCATGGTGAA 60.435 61.111 18.39 0.00 34.80 3.18
788 1137 0.594796 GTATGGTTACCGGGCGTACG 60.595 60.000 11.84 11.84 0.00 3.67
812 1170 1.000506 GTGACTCTTCAACCTACCGCA 59.999 52.381 0.00 0.00 31.90 5.69
869 1479 2.429610 GGGTTTCAGCTACCAGTCGATA 59.570 50.000 6.49 0.00 37.40 2.92
889 1499 4.002506 GGGTGGCGGCTTTTTGGG 62.003 66.667 11.43 0.00 0.00 4.12
919 1530 1.507174 GACTGACGGGAGGACGAAG 59.493 63.158 0.00 0.00 37.61 3.79
930 1541 2.430921 GACACTGCCGGACTGACG 60.431 66.667 5.05 1.01 0.00 4.35
985 1666 2.678934 CATGGCTGGCTGTGGCTT 60.679 61.111 2.00 0.00 38.73 4.35
1251 1932 4.778415 CGGACGGTGAGCGTGAGG 62.778 72.222 16.53 0.00 0.00 3.86
1311 1998 1.142097 GAAGCTGTAGTCGGCCTCC 59.858 63.158 0.00 0.00 46.23 4.30
1682 2377 9.220767 ACTACTAAAATTGCTCGAGAAAGAAAT 57.779 29.630 18.75 4.39 0.00 2.17
1683 2378 8.495949 CACTACTAAAATTGCTCGAGAAAGAAA 58.504 33.333 18.75 2.00 0.00 2.52
1686 2381 7.582435 TCACTACTAAAATTGCTCGAGAAAG 57.418 36.000 18.75 1.43 0.00 2.62
1694 2389 9.726438 ACTACTGAAATCACTACTAAAATTGCT 57.274 29.630 0.00 0.00 0.00 3.91
1695 2390 9.760660 CACTACTGAAATCACTACTAAAATTGC 57.239 33.333 0.00 0.00 0.00 3.56
1703 2398 8.589338 ACAGAAATCACTACTGAAATCACTACT 58.411 33.333 0.00 0.00 35.85 2.57
1704 2399 8.764524 ACAGAAATCACTACTGAAATCACTAC 57.235 34.615 0.00 0.00 35.85 2.73
1705 2400 9.208022 CAACAGAAATCACTACTGAAATCACTA 57.792 33.333 0.00 0.00 35.85 2.74
1706 2401 7.173907 CCAACAGAAATCACTACTGAAATCACT 59.826 37.037 0.00 0.00 35.85 3.41
1707 2402 7.041098 ACCAACAGAAATCACTACTGAAATCAC 60.041 37.037 0.00 0.00 35.85 3.06
1708 2403 6.998074 ACCAACAGAAATCACTACTGAAATCA 59.002 34.615 0.00 0.00 35.85 2.57
1709 2404 7.440523 ACCAACAGAAATCACTACTGAAATC 57.559 36.000 0.00 0.00 35.85 2.17
1710 2405 8.375506 TCTACCAACAGAAATCACTACTGAAAT 58.624 33.333 0.00 0.00 35.85 2.17
1711 2406 7.732025 TCTACCAACAGAAATCACTACTGAAA 58.268 34.615 0.00 0.00 35.85 2.69
1712 2407 7.297936 TCTACCAACAGAAATCACTACTGAA 57.702 36.000 0.00 0.00 35.85 3.02
1865 3540 3.817647 GCAAGATAGCCAAGATGGTAAGG 59.182 47.826 0.00 0.00 40.46 2.69
1891 3567 4.847198 TGTGTTCATGAGGCACAAGATAT 58.153 39.130 23.88 0.00 39.76 1.63
1892 3568 4.020307 TCTGTGTTCATGAGGCACAAGATA 60.020 41.667 25.12 14.31 41.73 1.98
1894 3570 2.104622 TCTGTGTTCATGAGGCACAAGA 59.895 45.455 25.12 21.55 41.73 3.02
1895 3571 2.497138 TCTGTGTTCATGAGGCACAAG 58.503 47.619 25.12 20.35 41.73 3.16
1897 3573 2.865119 ATCTGTGTTCATGAGGCACA 57.135 45.000 24.22 24.22 40.32 4.57
1898 3574 4.877823 TCATAATCTGTGTTCATGAGGCAC 59.122 41.667 19.40 19.40 0.00 5.01
1900 3576 7.157347 TCTATCATAATCTGTGTTCATGAGGC 58.843 38.462 0.00 0.00 0.00 4.70
1902 3578 9.761504 AGTTCTATCATAATCTGTGTTCATGAG 57.238 33.333 0.00 0.00 0.00 2.90
1928 5125 5.637810 CCTAGATTCGTTTGCTAGTTCACAA 59.362 40.000 0.00 0.00 31.82 3.33
1943 5140 4.142138 ACTTGACTAACAGGCCTAGATTCG 60.142 45.833 3.98 0.00 0.00 3.34
1994 5194 1.003580 ACAGGACTCGGTGCATGATTT 59.996 47.619 0.00 0.00 0.00 2.17
2002 5202 2.296471 ACTTGACTAACAGGACTCGGTG 59.704 50.000 0.00 0.00 0.00 4.94
2041 5242 5.238214 CCTAAAGAGATATTGTTGCTGCCTC 59.762 44.000 0.00 0.00 0.00 4.70
2140 5351 6.543100 AGTGGCAGTAGTGAGATAAGTACTAC 59.457 42.308 0.42 0.00 44.34 2.73
2141 5352 6.660800 AGTGGCAGTAGTGAGATAAGTACTA 58.339 40.000 0.42 0.00 35.08 1.82
2142 5353 5.511363 AGTGGCAGTAGTGAGATAAGTACT 58.489 41.667 0.42 0.00 36.87 2.73
2155 5366 3.764885 GGCAATGTTTAGTGGCAGTAG 57.235 47.619 1.77 0.00 45.47 2.57
2206 5442 4.082571 ACATTGGCATAGTTTCTTGTCTGC 60.083 41.667 0.00 0.00 0.00 4.26
2220 5456 3.378112 CCATCTGAAACGTACATTGGCAT 59.622 43.478 0.00 0.00 0.00 4.40
2221 5457 2.746904 CCATCTGAAACGTACATTGGCA 59.253 45.455 0.00 0.00 0.00 4.92
2223 5459 5.818136 ATTCCATCTGAAACGTACATTGG 57.182 39.130 13.54 13.54 36.33 3.16
2224 5460 6.899771 CGTTATTCCATCTGAAACGTACATTG 59.100 38.462 0.00 0.00 36.33 2.82
2231 5513 4.335082 TTGCGTTATTCCATCTGAAACG 57.665 40.909 5.86 5.86 39.22 3.60
2236 5521 6.117911 TGTACATTTGCGTTATTCCATCTG 57.882 37.500 0.00 0.00 0.00 2.90
2242 5527 5.121768 AGTGGACTGTACATTTGCGTTATTC 59.878 40.000 0.00 0.00 0.00 1.75
2305 5600 7.442364 TCAGTTAAGCCTTATGAGCAATACATC 59.558 37.037 0.00 0.00 0.00 3.06
2371 5668 8.296713 GCCTTGAGTCAATTTCTGTATGTTTTA 58.703 33.333 5.91 0.00 0.00 1.52
2450 5747 2.621055 TGTGATAACAAAGTGTGTGCCC 59.379 45.455 0.00 0.00 40.60 5.36
2461 5758 7.936847 AGTGAGTTAATTGGTCTGTGATAACAA 59.063 33.333 0.00 0.00 0.00 2.83
2525 5822 3.365265 GTTTGTCGGCTGGGCAGG 61.365 66.667 0.00 0.00 0.00 4.85
2542 5839 4.038402 ACAGTCTTGGGAGCAAAGAAAATG 59.962 41.667 0.00 0.00 35.50 2.32
2550 5847 0.819259 GTGCACAGTCTTGGGAGCAA 60.819 55.000 13.17 0.00 34.23 3.91
2558 5855 0.250209 CTGCTGGAGTGCACAGTCTT 60.250 55.000 21.04 0.00 38.12 3.01
2561 5858 2.429058 CCTGCTGGAGTGCACAGT 59.571 61.111 21.04 0.00 38.12 3.55
2566 5863 1.449246 CTGTAGCCTGCTGGAGTGC 60.449 63.158 14.77 3.79 34.57 4.40
2570 5867 1.997311 ATGCCTGTAGCCTGCTGGA 60.997 57.895 14.77 0.00 42.71 3.86
2585 5882 3.878086 TGAGTTTTGACGAGTTCATGC 57.122 42.857 0.00 0.00 32.84 4.06
2598 5895 3.230976 GGGAAGTCCACCAATGAGTTTT 58.769 45.455 0.00 0.00 37.91 2.43
2601 5898 1.444933 TGGGAAGTCCACCAATGAGT 58.555 50.000 0.00 0.00 41.46 3.41
2631 5928 6.571731 GCAATAGGTTTTTACTTGTCCCCTTC 60.572 42.308 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.