Multiple sequence alignment - TraesCS2A01G482500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G482500 chr2A 100.000 3596 0 0 1 3596 718954382 718950787 0.000000e+00 6641.0
1 TraesCS2A01G482500 chr2A 94.847 1669 70 1 896 2564 12210884 12212536 0.000000e+00 2591.0
2 TraesCS2A01G482500 chr2A 93.090 796 50 4 2806 3596 423033222 423032427 0.000000e+00 1160.0
3 TraesCS2A01G482500 chr2A 98.117 478 6 2 25 500 676648134 676648610 0.000000e+00 830.0
4 TraesCS2A01G482500 chr2A 90.150 599 52 2 2009 2600 775533853 775534451 0.000000e+00 773.0
5 TraesCS2A01G482500 chr2A 85.627 327 36 11 823 1147 673988975 673989292 2.070000e-87 333.0
6 TraesCS2A01G482500 chr2A 82.182 275 18 18 569 821 16773497 16773762 1.310000e-49 207.0
7 TraesCS2A01G482500 chr2A 83.028 218 27 4 294 502 683755717 683755933 4.740000e-44 189.0
8 TraesCS2A01G482500 chr2A 93.976 83 4 1 569 651 673967682 673967763 1.360000e-24 124.0
9 TraesCS2A01G482500 chr7B 93.264 3073 153 27 570 3596 57688853 57691917 0.000000e+00 4479.0
10 TraesCS2A01G482500 chr7B 90.695 1870 109 34 560 2367 502678998 502680864 0.000000e+00 2429.0
11 TraesCS2A01G482500 chr3D 96.721 2684 85 3 914 3596 253335182 253337863 0.000000e+00 4466.0
12 TraesCS2A01G482500 chr3D 96.942 2518 75 2 1080 3596 45652937 45650421 0.000000e+00 4222.0
13 TraesCS2A01G482500 chr3D 86.869 198 11 4 568 751 253334423 253334619 1.310000e-49 207.0
14 TraesCS2A01G482500 chr3D 91.667 120 8 2 586 703 45653388 45653269 7.990000e-37 165.0
15 TraesCS2A01G482500 chr3D 89.062 128 11 2 567 692 5628660 5628786 4.810000e-34 156.0
16 TraesCS2A01G482500 chr5A 93.624 1584 96 5 831 2413 524375474 524377053 0.000000e+00 2361.0
17 TraesCS2A01G482500 chr5A 95.204 1397 42 7 2225 3596 524377054 524378450 0.000000e+00 2185.0
18 TraesCS2A01G482500 chr5A 92.741 799 53 4 2803 3596 7821738 7822536 0.000000e+00 1149.0
19 TraesCS2A01G482500 chr5A 98.539 479 7 0 25 503 106751754 106751276 0.000000e+00 846.0
20 TraesCS2A01G482500 chr5A 90.789 456 38 4 831 1285 524370577 524371029 1.100000e-169 606.0
21 TraesCS2A01G482500 chr6A 98.050 1128 22 0 2469 3596 3841251 3840124 0.000000e+00 1962.0
22 TraesCS2A01G482500 chr6A 98.462 910 14 0 1512 2421 3842162 3841253 0.000000e+00 1604.0
23 TraesCS2A01G482500 chr6A 92.647 68 4 1 2671 2737 562260229 562260162 2.960000e-16 97.1
24 TraesCS2A01G482500 chr5B 94.471 1266 68 2 934 2197 707940275 707939010 0.000000e+00 1949.0
25 TraesCS2A01G482500 chr5B 99.660 294 1 0 207 500 586612863 586613156 4.090000e-149 538.0
26 TraesCS2A01G482500 chr5B 82.838 303 20 14 568 853 707940994 707940707 3.590000e-60 243.0
27 TraesCS2A01G482500 chr5B 81.754 285 20 19 567 828 26024972 26024697 3.640000e-50 209.0
28 TraesCS2A01G482500 chr5B 81.250 288 26 16 567 837 550039575 550039299 1.310000e-49 207.0
29 TraesCS2A01G482500 chr5B 93.056 72 2 1 499 567 56191920 56191991 6.350000e-18 102.0
30 TraesCS2A01G482500 chr5B 92.647 68 2 2 499 564 37069651 37069717 1.060000e-15 95.3
31 TraesCS2A01G482500 chr6B 93.173 791 50 3 2810 3596 623721716 623720926 0.000000e+00 1158.0
32 TraesCS2A01G482500 chr6B 90.955 597 47 2 2009 2598 623722404 623721808 0.000000e+00 797.0
33 TraesCS2A01G482500 chr6B 92.029 138 10 1 563 700 558674520 558674656 3.660000e-45 193.0
34 TraesCS2A01G482500 chr3A 92.965 796 51 4 2806 3596 25504429 25503634 0.000000e+00 1155.0
35 TraesCS2A01G482500 chr3A 98.532 477 7 0 25 501 596102015 596101539 0.000000e+00 843.0
36 TraesCS2A01G482500 chr1B 98.326 478 8 0 25 502 523228757 523228280 0.000000e+00 839.0
37 TraesCS2A01G482500 chr1B 93.800 500 13 1 1 500 319977688 319978169 0.000000e+00 736.0
38 TraesCS2A01G482500 chr1B 80.106 568 68 29 569 1118 418162415 418162955 7.290000e-102 381.0
39 TraesCS2A01G482500 chr1A 94.027 519 13 10 1 501 505688502 505687984 0.000000e+00 771.0
40 TraesCS2A01G482500 chr1A 93.822 518 15 9 1 501 505690345 505689828 0.000000e+00 763.0
41 TraesCS2A01G482500 chr1D 87.167 639 70 11 1367 1999 92091311 92090679 0.000000e+00 715.0
42 TraesCS2A01G482500 chr1D 94.118 68 3 1 2671 2737 92062214 92062147 6.350000e-18 102.0
43 TraesCS2A01G482500 chr1D 90.541 74 6 1 2665 2737 479786036 479786109 2.960000e-16 97.1
44 TraesCS2A01G482500 chr7D 83.654 728 54 37 569 1280 395222854 395222176 3.050000e-175 625.0
45 TraesCS2A01G482500 chr6D 81.290 310 20 22 568 853 382039060 382038765 2.170000e-52 217.0
46 TraesCS2A01G482500 chr3B 84.163 221 14 14 568 770 146556998 146556781 1.020000e-45 195.0
47 TraesCS2A01G482500 chr2B 83.333 198 17 4 568 751 98778934 98779129 6.170000e-38 169.0
48 TraesCS2A01G482500 chr2B 86.957 69 8 1 499 567 705195439 705195372 3.850000e-10 76.8
49 TraesCS2A01G482500 chr5D 97.101 69 2 0 499 567 53026086 53026154 2.270000e-22 117.0
50 TraesCS2A01G482500 chr5D 88.732 71 5 2 499 567 42545870 42545801 2.300000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G482500 chr2A 718950787 718954382 3595 True 6641.0 6641 100.0000 1 3596 1 chr2A.!!$R2 3595
1 TraesCS2A01G482500 chr2A 12210884 12212536 1652 False 2591.0 2591 94.8470 896 2564 1 chr2A.!!$F1 1668
2 TraesCS2A01G482500 chr2A 423032427 423033222 795 True 1160.0 1160 93.0900 2806 3596 1 chr2A.!!$R1 790
3 TraesCS2A01G482500 chr2A 775533853 775534451 598 False 773.0 773 90.1500 2009 2600 1 chr2A.!!$F7 591
4 TraesCS2A01G482500 chr7B 57688853 57691917 3064 False 4479.0 4479 93.2640 570 3596 1 chr7B.!!$F1 3026
5 TraesCS2A01G482500 chr7B 502678998 502680864 1866 False 2429.0 2429 90.6950 560 2367 1 chr7B.!!$F2 1807
6 TraesCS2A01G482500 chr3D 253334423 253337863 3440 False 2336.5 4466 91.7950 568 3596 2 chr3D.!!$F2 3028
7 TraesCS2A01G482500 chr3D 45650421 45653388 2967 True 2193.5 4222 94.3045 586 3596 2 chr3D.!!$R1 3010
8 TraesCS2A01G482500 chr5A 524375474 524378450 2976 False 2273.0 2361 94.4140 831 3596 2 chr5A.!!$F3 2765
9 TraesCS2A01G482500 chr5A 7821738 7822536 798 False 1149.0 1149 92.7410 2803 3596 1 chr5A.!!$F1 793
10 TraesCS2A01G482500 chr6A 3840124 3842162 2038 True 1783.0 1962 98.2560 1512 3596 2 chr6A.!!$R2 2084
11 TraesCS2A01G482500 chr5B 707939010 707940994 1984 True 1096.0 1949 88.6545 568 2197 2 chr5B.!!$R3 1629
12 TraesCS2A01G482500 chr6B 623720926 623722404 1478 True 977.5 1158 92.0640 2009 3596 2 chr6B.!!$R1 1587
13 TraesCS2A01G482500 chr3A 25503634 25504429 795 True 1155.0 1155 92.9650 2806 3596 1 chr3A.!!$R1 790
14 TraesCS2A01G482500 chr1B 418162415 418162955 540 False 381.0 381 80.1060 569 1118 1 chr1B.!!$F2 549
15 TraesCS2A01G482500 chr1A 505687984 505690345 2361 True 767.0 771 93.9245 1 501 2 chr1A.!!$R1 500
16 TraesCS2A01G482500 chr1D 92090679 92091311 632 True 715.0 715 87.1670 1367 1999 1 chr1D.!!$R2 632
17 TraesCS2A01G482500 chr7D 395222176 395222854 678 True 625.0 625 83.6540 569 1280 1 chr7D.!!$R1 711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
583 619 0.482446 ACAGGCCCTGTTTGGATCAA 59.518 50.000 11.57 0.0 42.59 2.57 F
756 891 1.005275 CCGCATCTGGATCGCATCT 60.005 57.895 0.00 0.0 0.00 2.90 F
757 892 1.013005 CCGCATCTGGATCGCATCTC 61.013 60.000 0.00 0.0 0.00 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 3356 0.670162 CGGCATCAATGGTTCCATCC 59.330 55.000 4.72 1.24 0.00 3.51 R
2434 4154 3.191162 TCAATGCCACACTCAAATGCTAC 59.809 43.478 0.00 0.00 0.00 3.58 R
2984 4733 2.859538 CACCAAATTGTTGCGGCATATC 59.140 45.455 2.28 0.00 33.01 1.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 143 1.136984 GTCCTCCACGTACAGCTCG 59.863 63.158 0.00 0.00 0.00 5.03
108 144 2.202623 CCTCCACGTACAGCTCGC 60.203 66.667 0.00 0.00 0.00 5.03
109 145 2.701780 CCTCCACGTACAGCTCGCT 61.702 63.158 0.00 0.00 0.00 4.93
124 160 4.373116 GCTGTCCTCCGCGACCAA 62.373 66.667 8.23 0.00 31.35 3.67
209 245 2.368439 CACAACCACGATGGATGGATT 58.632 47.619 15.12 0.00 43.70 3.01
285 321 1.144936 GGAAGCTGAGATGGGACCG 59.855 63.158 0.00 0.00 0.00 4.79
286 322 1.330655 GGAAGCTGAGATGGGACCGA 61.331 60.000 0.00 0.00 0.00 4.69
509 545 1.737793 CGGAGGGAGTACAAACATTGC 59.262 52.381 0.00 0.00 0.00 3.56
510 546 2.790433 GGAGGGAGTACAAACATTGCA 58.210 47.619 0.00 0.00 0.00 4.08
511 547 3.356290 GGAGGGAGTACAAACATTGCAT 58.644 45.455 0.00 0.00 0.00 3.96
512 548 3.129287 GGAGGGAGTACAAACATTGCATG 59.871 47.826 0.00 0.00 0.00 4.06
513 549 2.493278 AGGGAGTACAAACATTGCATGC 59.507 45.455 11.82 11.82 0.00 4.06
515 551 3.504863 GGAGTACAAACATTGCATGCTG 58.495 45.455 20.33 12.41 0.00 4.41
516 552 3.504863 GAGTACAAACATTGCATGCTGG 58.495 45.455 20.33 10.58 0.00 4.85
517 553 2.231964 AGTACAAACATTGCATGCTGGG 59.768 45.455 20.33 10.21 0.00 4.45
518 554 1.340088 ACAAACATTGCATGCTGGGA 58.660 45.000 20.33 2.61 0.00 4.37
519 555 1.693062 ACAAACATTGCATGCTGGGAA 59.307 42.857 20.33 4.79 0.00 3.97
520 556 2.070783 CAAACATTGCATGCTGGGAAC 58.929 47.619 20.33 0.00 0.00 3.62
521 557 1.340088 AACATTGCATGCTGGGAACA 58.660 45.000 20.33 0.00 39.59 3.18
523 559 2.737544 ACATTGCATGCTGGGAACATA 58.262 42.857 20.33 0.00 41.51 2.29
524 560 3.302161 ACATTGCATGCTGGGAACATAT 58.698 40.909 20.33 0.00 41.51 1.78
525 561 4.472496 ACATTGCATGCTGGGAACATATA 58.528 39.130 20.33 0.00 41.51 0.86
526 562 4.894705 ACATTGCATGCTGGGAACATATAA 59.105 37.500 20.33 0.00 41.51 0.98
527 563 5.363292 ACATTGCATGCTGGGAACATATAAA 59.637 36.000 20.33 0.00 41.51 1.40
528 564 6.042322 ACATTGCATGCTGGGAACATATAAAT 59.958 34.615 20.33 2.20 41.51 1.40
529 565 7.233144 ACATTGCATGCTGGGAACATATAAATA 59.767 33.333 20.33 0.00 41.51 1.40
532 568 8.876303 TGCATGCTGGGAACATATAAATAATA 57.124 30.769 20.33 0.00 41.51 0.98
533 569 9.306777 TGCATGCTGGGAACATATAAATAATAA 57.693 29.630 20.33 0.00 41.51 1.40
583 619 0.482446 ACAGGCCCTGTTTGGATCAA 59.518 50.000 11.57 0.00 42.59 2.57
614 651 9.710818 TTAGAGTTAGTATGGGTTAGTTGAGAT 57.289 33.333 0.00 0.00 0.00 2.75
756 891 1.005275 CCGCATCTGGATCGCATCT 60.005 57.895 0.00 0.00 0.00 2.90
757 892 1.013005 CCGCATCTGGATCGCATCTC 61.013 60.000 0.00 0.00 0.00 2.75
770 905 3.983494 ATCTCGCTCCCCGCATCG 61.983 66.667 0.00 0.00 39.08 3.84
846 1753 3.330720 CCCCGTCCTCTGCCCTTT 61.331 66.667 0.00 0.00 0.00 3.11
894 1848 3.465403 CCCGTCCTCTGCCCTCTG 61.465 72.222 0.00 0.00 0.00 3.35
901 1876 4.337304 TCTGCCCTCTGCCCTCCA 62.337 66.667 0.00 0.00 40.16 3.86
1148 2590 1.153745 CTTTCCTCCAGAGCGACGG 60.154 63.158 0.00 0.00 0.00 4.79
1340 2782 4.436998 CCTCAGCGGGTCGTCCAC 62.437 72.222 0.04 0.00 34.36 4.02
1610 3088 1.077644 AGTTAGCGAGCTCCGGAGA 60.078 57.895 35.69 10.23 39.04 3.71
1651 3129 1.788229 TCGAGCCCACTGGAATGATA 58.212 50.000 0.00 0.00 0.00 2.15
1878 3356 2.035155 GGGTTGGGGAGGAAACCG 59.965 66.667 0.00 0.00 45.70 4.44
2288 3819 1.939934 CACTTCGAGCACTTTGACCAA 59.060 47.619 0.00 0.00 0.00 3.67
2338 4058 6.065976 TGGTGAAGATTGTGAAGGACATAT 57.934 37.500 0.00 0.00 33.40 1.78
2434 4154 1.274728 CTGTGAAGAGGTGTCAGGAGG 59.725 57.143 0.00 0.00 0.00 4.30
2984 4733 5.862860 CACAAGTGAGGATGAGATCATATCG 59.137 44.000 0.00 0.00 36.57 2.92
3045 4794 4.041567 TCTTGCAGTTGGTTCCTATCTTGA 59.958 41.667 0.00 0.00 0.00 3.02
3102 4851 4.834406 AGGAGGGTCAGTGGATATTCTA 57.166 45.455 0.00 0.00 0.00 2.10
3241 4990 8.352942 GTTGAAGTCCAGTAGAAAAATGACATT 58.647 33.333 0.00 0.00 0.00 2.71
3308 5057 4.464069 GTCAGTTAGACAGGCTGAGAAT 57.536 45.455 23.66 6.14 46.77 2.40
3415 5164 1.062505 ACCCAAGGACCCAACATTTGT 60.063 47.619 0.00 0.00 0.00 2.83
3533 5282 7.235812 GTGGATAAGAGTAAGAGGGTTCCATAT 59.764 40.741 0.00 0.00 33.65 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 143 4.373116 TTGGTCGCGGAGGACAGC 62.373 66.667 6.13 0.00 38.70 4.40
108 144 2.125912 CTTGGTCGCGGAGGACAG 60.126 66.667 6.13 0.00 38.70 3.51
109 145 4.373116 GCTTGGTCGCGGAGGACA 62.373 66.667 6.13 0.00 38.70 4.02
110 146 4.070552 AGCTTGGTCGCGGAGGAC 62.071 66.667 6.13 0.00 36.18 3.85
111 147 4.069232 CAGCTTGGTCGCGGAGGA 62.069 66.667 6.13 0.00 34.40 3.71
112 148 4.379243 ACAGCTTGGTCGCGGAGG 62.379 66.667 6.13 0.00 34.40 4.30
113 149 2.811317 GACAGCTTGGTCGCGGAG 60.811 66.667 6.13 0.46 34.40 4.63
114 150 4.373116 GGACAGCTTGGTCGCGGA 62.373 66.667 6.13 0.00 38.70 5.54
115 151 4.379243 AGGACAGCTTGGTCGCGG 62.379 66.667 6.13 0.00 38.70 6.46
116 152 2.811317 GAGGACAGCTTGGTCGCG 60.811 66.667 0.00 0.00 38.70 5.87
117 153 2.435059 GGAGGACAGCTTGGTCGC 60.435 66.667 0.00 0.00 38.70 5.19
118 154 2.125912 CGGAGGACAGCTTGGTCG 60.126 66.667 0.00 0.00 38.70 4.79
119 155 2.435059 GCGGAGGACAGCTTGGTC 60.435 66.667 0.00 0.00 37.06 4.02
120 156 4.379243 CGCGGAGGACAGCTTGGT 62.379 66.667 0.00 0.00 35.22 3.67
121 157 3.997064 CTCGCGGAGGACAGCTTGG 62.997 68.421 6.13 0.00 35.22 3.61
122 158 2.507992 CTCGCGGAGGACAGCTTG 60.508 66.667 6.13 0.00 35.22 4.01
123 159 4.443266 GCTCGCGGAGGACAGCTT 62.443 66.667 6.13 0.00 35.22 3.74
209 245 4.297768 TCCTGTACATCTCCATGGATGAA 58.702 43.478 19.99 8.04 44.01 2.57
285 321 0.758123 CTCTTCCTCTCCTGCCCATC 59.242 60.000 0.00 0.00 0.00 3.51
286 322 0.693767 CCTCTTCCTCTCCTGCCCAT 60.694 60.000 0.00 0.00 0.00 4.00
472 508 1.006832 CCGGTCCTCATTAGTTTGCG 58.993 55.000 0.00 0.00 0.00 4.85
505 541 6.675413 ATTTATATGTTCCCAGCATGCAAT 57.325 33.333 21.98 2.77 31.97 3.56
506 542 7.594351 TTATTTATATGTTCCCAGCATGCAA 57.406 32.000 21.98 1.65 31.97 4.08
507 543 7.779754 ATTATTTATATGTTCCCAGCATGCA 57.220 32.000 21.98 0.00 31.97 3.96
548 584 1.000274 CCTGTGATGGATGCATGCATG 60.000 52.381 36.73 22.70 39.04 4.06
550 586 1.388837 GCCTGTGATGGATGCATGCA 61.389 55.000 25.04 25.04 0.00 3.96
552 588 1.461091 GGGCCTGTGATGGATGCATG 61.461 60.000 2.46 0.00 0.00 4.06
553 589 1.152610 GGGCCTGTGATGGATGCAT 60.153 57.895 0.84 0.00 0.00 3.96
554 590 2.276409 GGGCCTGTGATGGATGCA 59.724 61.111 0.84 0.00 0.00 3.96
556 592 0.033796 AACAGGGCCTGTGATGGATG 60.034 55.000 38.18 11.14 44.62 3.51
558 594 0.251297 CAAACAGGGCCTGTGATGGA 60.251 55.000 38.18 0.00 44.62 3.41
559 595 1.252904 CCAAACAGGGCCTGTGATGG 61.253 60.000 37.30 37.30 44.62 3.51
560 596 0.251297 TCCAAACAGGGCCTGTGATG 60.251 55.000 38.18 34.04 44.62 3.07
562 598 0.038166 GATCCAAACAGGGCCTGTGA 59.962 55.000 38.18 29.72 44.62 3.58
563 599 0.251297 TGATCCAAACAGGGCCTGTG 60.251 55.000 38.18 26.06 44.62 3.66
565 601 1.180029 CTTGATCCAAACAGGGCCTG 58.820 55.000 31.62 31.62 38.24 4.85
583 619 4.639019 ACCCATACTAACTCTAACCCCT 57.361 45.455 0.00 0.00 0.00 4.79
733 786 2.663188 GATCCAGATGCGGGCGAC 60.663 66.667 0.00 0.00 0.00 5.19
736 789 4.916293 TGCGATCCAGATGCGGGC 62.916 66.667 0.00 0.00 0.00 6.13
770 905 1.020861 TGTGATGCGAGATGTGGTGC 61.021 55.000 0.00 0.00 0.00 5.01
771 906 1.596260 GATGTGATGCGAGATGTGGTG 59.404 52.381 0.00 0.00 0.00 4.17
772 907 1.483827 AGATGTGATGCGAGATGTGGT 59.516 47.619 0.00 0.00 0.00 4.16
773 908 2.133553 GAGATGTGATGCGAGATGTGG 58.866 52.381 0.00 0.00 0.00 4.17
774 909 1.785430 CGAGATGTGATGCGAGATGTG 59.215 52.381 0.00 0.00 0.00 3.21
775 910 1.867289 GCGAGATGTGATGCGAGATGT 60.867 52.381 0.00 0.00 0.00 3.06
918 2312 3.327404 GGAACAGGAGGGGCGGAA 61.327 66.667 0.00 0.00 0.00 4.30
930 2324 3.980989 CGGTGTCGGACGGGAACA 61.981 66.667 3.34 0.00 0.00 3.18
1012 2407 0.253327 GAACCCCATCCTTCGAAGCT 59.747 55.000 19.99 6.16 0.00 3.74
1066 2507 0.888619 TGCGAGTTGAGGTCGAGATT 59.111 50.000 0.00 0.00 39.92 2.40
1181 2623 0.755698 GTGATAGTGAGGGAGCCCGA 60.756 60.000 0.00 0.00 41.95 5.14
1521 2963 2.440796 CCGGATGCTTGCCCATGT 60.441 61.111 0.00 0.00 0.00 3.21
1543 2985 1.145738 ACCATTGTCAAAGGGAGTGCT 59.854 47.619 11.39 0.00 39.72 4.40
1651 3129 8.454106 CAATTCTAACAAGCAAGCACTATTAGT 58.546 33.333 0.00 0.00 0.00 2.24
1878 3356 0.670162 CGGCATCAATGGTTCCATCC 59.330 55.000 4.72 1.24 0.00 3.51
2288 3819 3.946558 GCTCTTGCTCTTCTTCAATGGAT 59.053 43.478 0.00 0.00 36.03 3.41
2338 4058 5.254901 GACAGACTCCTTGAAGGTACTAGA 58.745 45.833 11.60 0.00 38.49 2.43
2434 4154 3.191162 TCAATGCCACACTCAAATGCTAC 59.809 43.478 0.00 0.00 0.00 3.58
2984 4733 2.859538 CACCAAATTGTTGCGGCATATC 59.140 45.455 2.28 0.00 33.01 1.63
3069 4818 4.264895 ACTGACCCTCCTAGGTAGTTTCAT 60.265 45.833 9.08 0.00 41.42 2.57
3102 4851 0.482446 TCCTGCACCCAATCCAAACT 59.518 50.000 0.00 0.00 0.00 2.66
3241 4990 6.546428 AAAACATAGCTAGAGCCTCTACAA 57.454 37.500 0.00 0.00 43.38 2.41
3308 5057 4.643784 GTCTCCATAGACCTCCTAAAACGA 59.356 45.833 0.00 0.00 45.50 3.85
3415 5164 5.755409 TTCTAAGTTTGGATGCACCTCTA 57.245 39.130 0.00 0.00 39.86 2.43
3533 5282 4.825422 TGGTTTCATTGTGCTTGTTCAAA 58.175 34.783 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.