Multiple sequence alignment - TraesCS2A01G482200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G482200 chr2A 100.000 4525 0 0 1 4525 718915822 718920346 0.000000e+00 8357.0
1 TraesCS2A01G482200 chr2A 94.935 612 28 3 2 611 752030275 752030885 0.000000e+00 955.0
2 TraesCS2A01G482200 chr2A 98.311 533 9 0 3993 4525 678139247 678138715 0.000000e+00 935.0
3 TraesCS2A01G482200 chr2A 97.180 532 15 0 3994 4525 207335964 207336495 0.000000e+00 900.0
4 TraesCS2A01G482200 chr2A 93.186 543 31 1 1801 2337 419091256 419090714 0.000000e+00 793.0
5 TraesCS2A01G482200 chr2A 92.818 543 33 1 1801 2337 41160091 41160633 0.000000e+00 782.0
6 TraesCS2A01G482200 chr2A 84.677 496 58 12 2426 2918 718838178 718838658 3.170000e-131 479.0
7 TraesCS2A01G482200 chr2A 81.119 572 66 21 2415 2977 718884369 718884907 1.950000e-113 420.0
8 TraesCS2A01G482200 chr2A 75.978 537 111 10 3047 3577 718884943 718885467 1.250000e-65 261.0
9 TraesCS2A01G482200 chr2A 92.727 165 12 0 985 1149 718929199 718929363 5.850000e-59 239.0
10 TraesCS2A01G482200 chr2A 84.834 211 29 3 2415 2623 718819609 718819818 4.590000e-50 209.0
11 TraesCS2A01G482200 chr2A 84.615 169 26 0 2744 2912 718729996 718730164 7.790000e-38 169.0
12 TraesCS2A01G482200 chr2D 94.704 1265 57 7 2371 3632 594998032 594996775 0.000000e+00 1956.0
13 TraesCS2A01G482200 chr2D 88.267 1125 67 20 621 1718 594999648 594998562 0.000000e+00 1286.0
14 TraesCS2A01G482200 chr2D 81.620 778 84 24 965 1697 584668206 584668969 1.400000e-164 590.0
15 TraesCS2A01G482200 chr2D 81.911 492 51 19 2427 2913 584662142 584662600 9.190000e-102 381.0
16 TraesCS2A01G482200 chr2D 79.508 488 83 12 3047 3531 584662700 584663173 9.380000e-87 331.0
17 TraesCS2A01G482200 chr2D 87.442 215 27 0 2426 2640 584619750 584619964 9.720000e-62 248.0
18 TraesCS2A01G482200 chr2D 84.681 235 36 0 1329 1563 584657543 584657777 7.570000e-58 235.0
19 TraesCS2A01G482200 chr2D 86.854 213 21 4 952 1158 584781298 584781509 9.790000e-57 231.0
20 TraesCS2A01G482200 chr2D 91.391 151 13 0 1000 1150 584661349 584661499 1.650000e-49 207.0
21 TraesCS2A01G482200 chr2D 88.281 128 15 0 1000 1127 584542724 584542851 2.180000e-33 154.0
22 TraesCS2A01G482200 chr2D 85.841 113 16 0 1017 1129 584530325 584530437 2.210000e-23 121.0
23 TraesCS2A01G482200 chr2D 92.308 65 4 1 1740 1804 594998143 594998080 1.730000e-14 91.6
24 TraesCS2A01G482200 chr2B 93.313 1286 72 9 2351 3632 704728686 704729961 0.000000e+00 1886.0
25 TraesCS2A01G482200 chr2B 88.678 1210 74 18 621 1796 704727479 704728659 0.000000e+00 1417.0
26 TraesCS2A01G482200 chr2B 81.625 517 59 20 2427 2939 704722491 704722975 3.280000e-106 396.0
27 TraesCS2A01G482200 chr2B 86.059 373 35 7 3634 3993 704730702 704731070 7.100000e-103 385.0
28 TraesCS2A01G482200 chr2B 83.682 239 35 4 2415 2650 704413122 704413359 5.890000e-54 222.0
29 TraesCS2A01G482200 chr2B 85.782 211 24 3 952 1158 704967746 704967954 7.620000e-53 219.0
30 TraesCS2A01G482200 chr2B 75.154 487 104 12 3047 3530 704723100 704723572 3.550000e-51 213.0
31 TraesCS2A01G482200 chr2B 84.541 207 32 0 1329 1535 704579979 704580185 5.930000e-49 206.0
32 TraesCS2A01G482200 chr2B 75.225 444 93 13 3041 3481 704581275 704581704 1.280000e-45 195.0
33 TraesCS2A01G482200 chr2B 88.820 161 15 1 1000 1160 704721674 704721831 1.280000e-45 195.0
34 TraesCS2A01G482200 chr2B 88.199 161 18 1 1000 1160 704579574 704579733 1.660000e-44 191.0
35 TraesCS2A01G482200 chr2B 85.799 169 24 0 2744 2912 704296410 704296578 3.600000e-41 180.0
36 TraesCS2A01G482200 chr5A 95.432 613 26 2 2 613 438843068 438843679 0.000000e+00 976.0
37 TraesCS2A01G482200 chr5A 94.608 612 31 2 1 611 40058163 40058773 0.000000e+00 946.0
38 TraesCS2A01G482200 chr5A 93.740 623 26 6 1 613 631628598 631629217 0.000000e+00 922.0
39 TraesCS2A01G482200 chr5A 92.210 552 36 2 1793 2337 210842659 210843210 0.000000e+00 774.0
40 TraesCS2A01G482200 chr3A 95.114 614 26 3 1 613 720859584 720858974 0.000000e+00 965.0
41 TraesCS2A01G482200 chr3A 97.561 533 12 1 3993 4525 601335552 601336083 0.000000e+00 911.0
42 TraesCS2A01G482200 chr3A 92.804 542 33 1 1802 2337 467349282 467348741 0.000000e+00 780.0
43 TraesCS2A01G482200 chr7A 94.660 618 31 2 1 617 129153436 129152820 0.000000e+00 957.0
44 TraesCS2A01G482200 chr7A 90.772 596 44 5 1 593 258416636 258416049 0.000000e+00 785.0
45 TraesCS2A01G482200 chr7A 92.634 543 34 1 1801 2337 36497137 36496595 0.000000e+00 776.0
46 TraesCS2A01G482200 chr4A 94.137 614 33 3 1 613 594998528 594999139 0.000000e+00 931.0
47 TraesCS2A01G482200 chr4A 96.998 533 16 0 3993 4525 685757835 685757303 0.000000e+00 896.0
48 TraesCS2A01G482200 chr4A 92.791 541 33 1 1803 2337 530181302 530180762 0.000000e+00 778.0
49 TraesCS2A01G482200 chr6A 97.761 536 11 1 3991 4525 111563606 111563071 0.000000e+00 922.0
50 TraesCS2A01G482200 chr6A 91.720 628 34 8 1 613 184971868 184971244 0.000000e+00 856.0
51 TraesCS2A01G482200 chr3B 96.097 538 20 1 3989 4525 373615105 373615642 0.000000e+00 876.0
52 TraesCS2A01G482200 chr6D 96.248 533 20 0 3993 4525 363382210 363381678 0.000000e+00 874.0
53 TraesCS2A01G482200 chr1B 96.255 534 19 1 3993 4525 161397992 161398525 0.000000e+00 874.0
54 TraesCS2A01G482200 chr3D 96.067 534 21 0 3992 4525 511457315 511457848 0.000000e+00 870.0
55 TraesCS2A01G482200 chr1A 93.394 545 29 2 1800 2337 562082461 562083005 0.000000e+00 800.0
56 TraesCS2A01G482200 chr1A 92.740 551 33 2 1794 2337 12866411 12865861 0.000000e+00 789.0
57 TraesCS2A01G482200 chrUn 92.634 543 34 1 1801 2337 82050357 82050899 0.000000e+00 776.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G482200 chr2A 718915822 718920346 4524 False 8357.000000 8357 100.000000 1 4525 1 chr2A.!!$F6 4524
1 TraesCS2A01G482200 chr2A 752030275 752030885 610 False 955.000000 955 94.935000 2 611 1 chr2A.!!$F8 609
2 TraesCS2A01G482200 chr2A 678138715 678139247 532 True 935.000000 935 98.311000 3993 4525 1 chr2A.!!$R2 532
3 TraesCS2A01G482200 chr2A 207335964 207336495 531 False 900.000000 900 97.180000 3994 4525 1 chr2A.!!$F2 531
4 TraesCS2A01G482200 chr2A 419090714 419091256 542 True 793.000000 793 93.186000 1801 2337 1 chr2A.!!$R1 536
5 TraesCS2A01G482200 chr2A 41160091 41160633 542 False 782.000000 782 92.818000 1801 2337 1 chr2A.!!$F1 536
6 TraesCS2A01G482200 chr2A 718884369 718885467 1098 False 340.500000 420 78.548500 2415 3577 2 chr2A.!!$F9 1162
7 TraesCS2A01G482200 chr2D 594996775 594999648 2873 True 1111.200000 1956 91.759667 621 3632 3 chr2D.!!$R1 3011
8 TraesCS2A01G482200 chr2D 584668206 584668969 763 False 590.000000 590 81.620000 965 1697 1 chr2D.!!$F4 732
9 TraesCS2A01G482200 chr2D 584657543 584663173 5630 False 288.500000 381 84.372750 1000 3531 4 chr2D.!!$F6 2531
10 TraesCS2A01G482200 chr2B 704721674 704731070 9396 False 748.666667 1886 85.608167 621 3993 6 chr2B.!!$F5 3372
11 TraesCS2A01G482200 chr5A 438843068 438843679 611 False 976.000000 976 95.432000 2 613 1 chr5A.!!$F3 611
12 TraesCS2A01G482200 chr5A 40058163 40058773 610 False 946.000000 946 94.608000 1 611 1 chr5A.!!$F1 610
13 TraesCS2A01G482200 chr5A 631628598 631629217 619 False 922.000000 922 93.740000 1 613 1 chr5A.!!$F4 612
14 TraesCS2A01G482200 chr5A 210842659 210843210 551 False 774.000000 774 92.210000 1793 2337 1 chr5A.!!$F2 544
15 TraesCS2A01G482200 chr3A 720858974 720859584 610 True 965.000000 965 95.114000 1 613 1 chr3A.!!$R2 612
16 TraesCS2A01G482200 chr3A 601335552 601336083 531 False 911.000000 911 97.561000 3993 4525 1 chr3A.!!$F1 532
17 TraesCS2A01G482200 chr3A 467348741 467349282 541 True 780.000000 780 92.804000 1802 2337 1 chr3A.!!$R1 535
18 TraesCS2A01G482200 chr7A 129152820 129153436 616 True 957.000000 957 94.660000 1 617 1 chr7A.!!$R2 616
19 TraesCS2A01G482200 chr7A 258416049 258416636 587 True 785.000000 785 90.772000 1 593 1 chr7A.!!$R3 592
20 TraesCS2A01G482200 chr7A 36496595 36497137 542 True 776.000000 776 92.634000 1801 2337 1 chr7A.!!$R1 536
21 TraesCS2A01G482200 chr4A 594998528 594999139 611 False 931.000000 931 94.137000 1 613 1 chr4A.!!$F1 612
22 TraesCS2A01G482200 chr4A 685757303 685757835 532 True 896.000000 896 96.998000 3993 4525 1 chr4A.!!$R2 532
23 TraesCS2A01G482200 chr4A 530180762 530181302 540 True 778.000000 778 92.791000 1803 2337 1 chr4A.!!$R1 534
24 TraesCS2A01G482200 chr6A 111563071 111563606 535 True 922.000000 922 97.761000 3991 4525 1 chr6A.!!$R1 534
25 TraesCS2A01G482200 chr6A 184971244 184971868 624 True 856.000000 856 91.720000 1 613 1 chr6A.!!$R2 612
26 TraesCS2A01G482200 chr3B 373615105 373615642 537 False 876.000000 876 96.097000 3989 4525 1 chr3B.!!$F1 536
27 TraesCS2A01G482200 chr6D 363381678 363382210 532 True 874.000000 874 96.248000 3993 4525 1 chr6D.!!$R1 532
28 TraesCS2A01G482200 chr1B 161397992 161398525 533 False 874.000000 874 96.255000 3993 4525 1 chr1B.!!$F1 532
29 TraesCS2A01G482200 chr3D 511457315 511457848 533 False 870.000000 870 96.067000 3992 4525 1 chr3D.!!$F1 533
30 TraesCS2A01G482200 chr1A 562082461 562083005 544 False 800.000000 800 93.394000 1800 2337 1 chr1A.!!$F1 537
31 TraesCS2A01G482200 chr1A 12865861 12866411 550 True 789.000000 789 92.740000 1794 2337 1 chr1A.!!$R1 543
32 TraesCS2A01G482200 chrUn 82050357 82050899 542 False 776.000000 776 92.634000 1801 2337 1 chrUn.!!$F1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
883 6077 0.036875 CCAACCTGGGACTTGTCTCC 59.963 60.0 0.00 0.55 32.67 3.71 F
884 6078 0.320771 CAACCTGGGACTTGTCTCCG 60.321 60.0 0.00 0.00 0.00 4.63 F
956 6150 0.742281 CAACATCCGGAGCAGTGAGG 60.742 60.0 11.34 0.00 0.00 3.86 F
2347 8045 0.249911 ACAACCGGTCAGCTCAACTC 60.250 55.0 8.04 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1718 7012 0.036010 AGAAGGCCACGTGAAGGATG 60.036 55.0 19.30 0.00 0.00 3.51 R
1757 7448 0.106708 TTTTCTGTCAGCTGCGGAGT 59.893 50.0 9.47 0.00 0.00 3.85 R
2649 8358 0.322648 AGATAGCAGCTGCACACACA 59.677 50.0 38.24 16.98 45.16 3.72 R
3974 10449 0.599991 AATGAGCGCTCGTGTTGTGA 60.600 50.0 31.62 12.60 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
613 645 1.678728 CGGCTGTTGGGATGCTCTTAA 60.679 52.381 0.00 0.00 0.00 1.85
618 650 3.674997 TGTTGGGATGCTCTTAACACTC 58.325 45.455 0.00 0.00 0.00 3.51
630 5816 5.521906 TCTTAACACTCTATAGCAGCCAG 57.478 43.478 0.00 0.00 0.00 4.85
651 5837 0.582005 GTCAACAGCTCCACGTTCAC 59.418 55.000 0.00 0.00 0.00 3.18
653 5839 1.202639 TCAACAGCTCCACGTTCACAT 60.203 47.619 0.00 0.00 0.00 3.21
673 5859 6.013725 TCACATGTTTGTATTGTACTCCCTCT 60.014 38.462 0.00 0.00 33.76 3.69
717 5907 4.528987 TGCACATCAACCTTACCTACTGTA 59.471 41.667 0.00 0.00 0.00 2.74
774 5968 3.373439 GGCTAAGAGTCTTCATGCACAAG 59.627 47.826 9.12 0.00 0.00 3.16
775 5969 3.373439 GCTAAGAGTCTTCATGCACAAGG 59.627 47.826 9.12 0.00 0.00 3.61
791 5985 4.081642 GCACAAGGATCTTACCTACTGTCA 60.082 45.833 0.00 0.00 39.62 3.58
792 5986 5.411781 CACAAGGATCTTACCTACTGTCAC 58.588 45.833 0.00 0.00 39.62 3.67
793 5987 5.186021 CACAAGGATCTTACCTACTGTCACT 59.814 44.000 0.00 0.00 39.62 3.41
794 5988 5.780793 ACAAGGATCTTACCTACTGTCACTT 59.219 40.000 0.00 0.00 39.62 3.16
795 5989 6.071278 ACAAGGATCTTACCTACTGTCACTTC 60.071 42.308 0.00 0.00 39.62 3.01
819 6013 1.737735 CAGCGATGACGTGCAAGGA 60.738 57.895 4.26 0.00 41.98 3.36
847 6041 5.596836 TCAAGTTTCAACTGCTGGAAAAT 57.403 34.783 0.00 0.00 39.66 1.82
849 6043 6.039781 CAAGTTTCAACTGCTGGAAAATTG 57.960 37.500 15.35 15.35 45.98 2.32
880 6074 0.537371 CCACCAACCTGGGACTTGTC 60.537 60.000 0.00 0.00 43.37 3.18
881 6075 0.474184 CACCAACCTGGGACTTGTCT 59.526 55.000 0.00 0.00 43.37 3.41
882 6076 0.765510 ACCAACCTGGGACTTGTCTC 59.234 55.000 0.00 0.00 43.37 3.36
883 6077 0.036875 CCAACCTGGGACTTGTCTCC 59.963 60.000 0.00 0.55 32.67 3.71
884 6078 0.320771 CAACCTGGGACTTGTCTCCG 60.321 60.000 0.00 0.00 0.00 4.63
885 6079 0.763223 AACCTGGGACTTGTCTCCGT 60.763 55.000 0.00 0.00 0.00 4.69
886 6080 1.186267 ACCTGGGACTTGTCTCCGTC 61.186 60.000 0.00 0.00 0.00 4.79
887 6081 1.213013 CTGGGACTTGTCTCCGTCG 59.787 63.158 0.00 0.00 0.00 5.12
888 6082 1.524863 CTGGGACTTGTCTCCGTCGT 61.525 60.000 0.00 0.00 0.00 4.34
889 6083 1.111116 TGGGACTTGTCTCCGTCGTT 61.111 55.000 0.00 0.00 0.00 3.85
890 6084 0.883833 GGGACTTGTCTCCGTCGTTA 59.116 55.000 0.61 0.00 0.00 3.18
891 6085 1.135460 GGGACTTGTCTCCGTCGTTAG 60.135 57.143 0.61 0.00 0.00 2.34
892 6086 1.538950 GGACTTGTCTCCGTCGTTAGT 59.461 52.381 0.61 0.00 0.00 2.24
893 6087 2.030451 GGACTTGTCTCCGTCGTTAGTT 60.030 50.000 0.61 0.00 0.00 2.24
894 6088 3.189287 GGACTTGTCTCCGTCGTTAGTTA 59.811 47.826 0.61 0.00 0.00 2.24
895 6089 4.142513 GGACTTGTCTCCGTCGTTAGTTAT 60.143 45.833 0.61 0.00 0.00 1.89
896 6090 4.979388 ACTTGTCTCCGTCGTTAGTTATC 58.021 43.478 0.00 0.00 0.00 1.75
897 6091 4.699257 ACTTGTCTCCGTCGTTAGTTATCT 59.301 41.667 0.00 0.00 0.00 1.98
898 6092 4.611310 TGTCTCCGTCGTTAGTTATCTG 57.389 45.455 0.00 0.00 0.00 2.90
899 6093 4.005650 TGTCTCCGTCGTTAGTTATCTGT 58.994 43.478 0.00 0.00 0.00 3.41
900 6094 5.178061 TGTCTCCGTCGTTAGTTATCTGTA 58.822 41.667 0.00 0.00 0.00 2.74
931 6125 7.010552 CACAGTATAAATGCAGGTTCTCTACAC 59.989 40.741 0.00 0.00 0.00 2.90
956 6150 0.742281 CAACATCCGGAGCAGTGAGG 60.742 60.000 11.34 0.00 0.00 3.86
961 6155 2.496817 CGGAGCAGTGAGGTAGCC 59.503 66.667 0.00 0.00 0.00 3.93
974 6168 1.134560 AGGTAGCCAATCGTCGTTCTC 59.865 52.381 0.00 0.00 0.00 2.87
977 6171 1.997669 AGCCAATCGTCGTTCTCTTC 58.002 50.000 0.00 0.00 0.00 2.87
982 6176 1.919956 ATCGTCGTTCTCTTCGCCGT 61.920 55.000 0.00 0.00 31.87 5.68
983 6177 1.728426 CGTCGTTCTCTTCGCCGTT 60.728 57.895 0.00 0.00 0.00 4.44
1065 6259 1.811266 CGGCTACATCGCTGCAGTT 60.811 57.895 16.64 0.00 0.00 3.16
1110 6310 1.862147 CTACGCGGTCAAGACGACG 60.862 63.158 12.47 10.61 46.42 5.12
1150 6350 6.354039 TGGTTCTTGTTTCTTCGTTTCTAC 57.646 37.500 0.00 0.00 0.00 2.59
1151 6351 6.110707 TGGTTCTTGTTTCTTCGTTTCTACT 58.889 36.000 0.00 0.00 0.00 2.57
1152 6352 7.267128 TGGTTCTTGTTTCTTCGTTTCTACTA 58.733 34.615 0.00 0.00 0.00 1.82
1162 6362 8.571461 TTCTTCGTTTCTACTAGTTCTGTTTC 57.429 34.615 0.00 0.00 0.00 2.78
1209 6433 3.326880 TCAGAGTTAGGTTCTTTGGACCC 59.673 47.826 0.00 0.00 0.00 4.46
1219 6443 0.890683 CTTTGGACCCTGCCATGTTC 59.109 55.000 0.00 0.00 37.86 3.18
1292 6550 5.518847 TGCGTACTATCACTTATGCTGAAAC 59.481 40.000 0.00 0.00 32.37 2.78
1384 6654 3.053245 TGGAAAAGAACTCCCACCTCAAA 60.053 43.478 0.00 0.00 31.32 2.69
1441 6711 1.752198 CCAACTGGACGTGGAAGGA 59.248 57.895 0.00 0.00 37.39 3.36
1492 6762 3.435186 GCCTTCCTTGTCGCTGCC 61.435 66.667 0.00 0.00 0.00 4.85
1495 6765 3.551496 CTTCCTTGTCGCTGCCCCA 62.551 63.158 0.00 0.00 0.00 4.96
1542 6815 1.217882 GTAAACATCCATCTCCCGCG 58.782 55.000 0.00 0.00 0.00 6.46
1548 6821 1.051812 ATCCATCTCCCGCGATCTTT 58.948 50.000 8.23 0.00 0.00 2.52
1663 6951 6.317391 TCAGCTATATATCACGTGATCTCTGG 59.683 42.308 33.11 18.77 36.05 3.86
1698 6992 4.156739 CAGCCAAAGAATTAGACTTGGGAC 59.843 45.833 0.00 0.00 39.96 4.46
1714 7008 1.614317 GGGACCTTGTTCACCCTGATG 60.614 57.143 0.00 0.00 39.28 3.07
1718 7012 2.154462 CCTTGTTCACCCTGATGTCAC 58.846 52.381 0.00 0.00 0.00 3.67
1719 7013 2.487086 CCTTGTTCACCCTGATGTCACA 60.487 50.000 0.00 0.00 0.00 3.58
1727 7021 2.026822 ACCCTGATGTCACATCCTTCAC 60.027 50.000 15.44 0.00 0.00 3.18
1733 7027 1.003839 TCACATCCTTCACGTGGCC 60.004 57.895 17.00 0.00 0.00 5.36
1822 7513 7.069331 TCGAAGGGTTTTTATCATTTATGCCAT 59.931 33.333 0.00 0.00 0.00 4.40
1836 7527 8.916062 TCATTTATGCCATTAATTGTGTCTCAT 58.084 29.630 0.00 0.00 0.00 2.90
1923 7614 8.241497 TGCTCAAAAATGCCATTAGATATCTT 57.759 30.769 11.25 0.00 0.00 2.40
1953 7644 7.490962 TGACATCGTTCTGTTAGATTTTTGT 57.509 32.000 0.00 0.00 0.00 2.83
1995 7686 7.490000 ACATTGTTATTTTTACGTCAAACCCA 58.510 30.769 0.00 0.00 0.00 4.51
2078 7769 1.357420 TGATATGTGTGGCCCCACTTT 59.643 47.619 19.59 9.45 46.30 2.66
2108 7799 8.238631 GGAGTAACCAAGCGAATAATTTTACAA 58.761 33.333 0.00 0.00 38.79 2.41
2241 7938 8.155821 AGATTTGAGATCACAATGATGATGTC 57.844 34.615 6.40 12.47 45.29 3.06
2248 7945 5.682234 TCACAATGATGATGTCTAGTGGT 57.318 39.130 0.00 0.00 0.00 4.16
2272 7969 7.698130 GGTATTTTTGAGCATGTGTCTAATGAC 59.302 37.037 0.00 0.00 43.20 3.06
2339 8037 2.825982 TGGGACACAACCGGTCAG 59.174 61.111 8.04 6.49 37.00 3.51
2340 8038 2.668550 GGGACACAACCGGTCAGC 60.669 66.667 8.04 0.00 37.00 4.26
2341 8039 2.426023 GGACACAACCGGTCAGCT 59.574 61.111 8.04 0.00 37.00 4.24
2342 8040 1.668151 GGACACAACCGGTCAGCTC 60.668 63.158 8.04 0.05 37.00 4.09
2343 8041 1.069090 GACACAACCGGTCAGCTCA 59.931 57.895 8.04 0.00 35.36 4.26
2344 8042 0.531974 GACACAACCGGTCAGCTCAA 60.532 55.000 8.04 0.00 35.36 3.02
2347 8045 0.249911 ACAACCGGTCAGCTCAACTC 60.250 55.000 8.04 0.00 0.00 3.01
2349 8047 1.272490 CAACCGGTCAGCTCAACTCTA 59.728 52.381 8.04 0.00 0.00 2.43
2493 8200 2.983930 GAGGTCGTGCGTGAGAGCT 61.984 63.158 7.38 7.38 46.37 4.09
2649 8358 8.093927 CCAATTTGGGTACATAATCTTTTGTGT 58.906 33.333 7.60 0.00 36.21 3.72
2650 8359 8.924691 CAATTTGGGTACATAATCTTTTGTGTG 58.075 33.333 0.00 0.00 37.68 3.82
2651 8360 7.589958 TTTGGGTACATAATCTTTTGTGTGT 57.410 32.000 0.00 0.00 37.68 3.72
2652 8361 6.567687 TGGGTACATAATCTTTTGTGTGTG 57.432 37.500 0.00 0.00 37.68 3.82
2673 8382 1.829849 TGTGCAGCTGCTATCTCTCTT 59.170 47.619 36.61 0.00 42.66 2.85
2714 8425 6.782298 TGGAAATAAATCACGTAACGTTGA 57.218 33.333 11.99 0.00 38.32 3.18
2960 8676 1.986378 CTTGTTTCTACAGCTCGGTCG 59.014 52.381 0.00 0.00 35.28 4.79
3015 8731 1.332997 GCAAGCTCTCATTCCAATCCG 59.667 52.381 0.00 0.00 0.00 4.18
3239 8955 0.320771 GCAGCTCTCCCGTTTCTTGA 60.321 55.000 0.00 0.00 0.00 3.02
3240 8956 1.878102 GCAGCTCTCCCGTTTCTTGAA 60.878 52.381 0.00 0.00 0.00 2.69
3305 9021 2.621526 AGTCGGCTGTTTAAAGTTTGGG 59.378 45.455 0.00 0.00 0.00 4.12
3401 9123 3.561241 GGATCCCCGGAGAAGCCC 61.561 72.222 0.73 0.00 0.00 5.19
3410 9132 1.856265 CGGAGAAGCCCAAAGTGTGC 61.856 60.000 0.00 0.00 0.00 4.57
3416 9138 1.529244 GCCCAAAGTGTGCCTGTCT 60.529 57.895 0.00 0.00 0.00 3.41
3473 9195 7.073208 TCAAGTATAATGACCTGGGTGAGATA 58.927 38.462 0.00 0.00 0.00 1.98
3503 9225 0.678684 TCGTCGAGTATGGCAGGACA 60.679 55.000 5.26 0.00 0.00 4.02
3535 9257 2.156917 TCCCTACTGATATGTACGCCG 58.843 52.381 0.00 0.00 0.00 6.46
3541 9263 0.966179 TGATATGTACGCCGGCTGAT 59.034 50.000 26.68 12.58 0.00 2.90
3587 9309 9.421806 CAAAATATTGTTGTCTCAAATAAGCCA 57.578 29.630 0.00 0.00 0.00 4.75
3588 9310 9.643693 AAAATATTGTTGTCTCAAATAAGCCAG 57.356 29.630 0.00 0.00 0.00 4.85
3609 9332 3.641031 GCTCCGTGCTTGTGTTTTT 57.359 47.368 0.00 0.00 38.95 1.94
3645 10107 1.755380 AGTACCCGAGTTGCACTATCC 59.245 52.381 0.00 0.00 0.00 2.59
3650 10112 0.249073 CGAGTTGCACTATCCCGAGG 60.249 60.000 0.00 0.00 0.00 4.63
3668 10130 0.759436 GGATCCTCGGGCTACAGGAA 60.759 60.000 3.84 0.00 42.29 3.36
3671 10133 2.464796 TCCTCGGGCTACAGGAAATA 57.535 50.000 0.00 0.00 35.75 1.40
3677 10139 4.850680 TCGGGCTACAGGAAATATGTTTT 58.149 39.130 0.00 0.00 32.02 2.43
3689 10151 8.388103 CAGGAAATATGTTTTCTACAACTACGG 58.612 37.037 0.00 0.00 40.89 4.02
3694 10156 5.471556 TGTTTTCTACAACTACGGGATCA 57.528 39.130 0.00 0.00 32.64 2.92
3717 10179 4.844085 ACCCCAACATATTCTATCCATCGA 59.156 41.667 0.00 0.00 0.00 3.59
3718 10180 5.309543 ACCCCAACATATTCTATCCATCGAA 59.690 40.000 0.00 0.00 0.00 3.71
3719 10181 6.012508 ACCCCAACATATTCTATCCATCGAAT 60.013 38.462 0.00 0.00 34.49 3.34
3741 10203 0.322648 ACAACTACCTAACCACCGGC 59.677 55.000 0.00 0.00 0.00 6.13
3742 10204 0.392060 CAACTACCTAACCACCGGCC 60.392 60.000 0.00 0.00 0.00 6.13
3764 10226 3.326880 CCCCTGGCGACTTATATAAAGGT 59.673 47.826 7.53 0.00 0.00 3.50
3809 10271 0.596341 GTCACGCGGGTGCAAAATTT 60.596 50.000 26.31 0.00 44.03 1.82
3842 10315 6.702723 CAGAAAACTCCATTGCAATTCTTTCA 59.297 34.615 9.83 0.00 0.00 2.69
3870 10343 5.895636 TCAAACAAACATAGGTAGGCATG 57.104 39.130 0.00 0.00 0.00 4.06
3871 10344 4.157656 TCAAACAAACATAGGTAGGCATGC 59.842 41.667 9.90 9.90 0.00 4.06
3877 10350 2.026822 ACATAGGTAGGCATGCCATAGC 60.027 50.000 37.18 30.06 38.92 2.97
3891 10365 2.820787 GCCATAGCCTCTACTCATACGT 59.179 50.000 0.00 0.00 0.00 3.57
3913 10387 3.462579 TGGGTCTAAACCTGGGTAAAACA 59.537 43.478 0.00 0.00 45.66 2.83
3917 10391 6.298361 GGTCTAAACCTGGGTAAAACAACTA 58.702 40.000 0.00 0.00 42.80 2.24
3929 10403 7.120579 TGGGTAAAACAACTATGTCATCATCAC 59.879 37.037 0.00 0.00 39.40 3.06
3933 10407 5.095145 ACAACTATGTCATCATCACTGCT 57.905 39.130 0.00 0.00 33.41 4.24
3946 10420 4.222366 TCATCACTGCTGACAAGATCTCTT 59.778 41.667 0.00 0.00 36.45 2.85
3950 10424 3.326006 ACTGCTGACAAGATCTCTTTGGA 59.674 43.478 0.00 0.00 33.11 3.53
3974 10449 3.336676 CCACCCCCTCCCTATTATCTTT 58.663 50.000 0.00 0.00 0.00 2.52
3986 10461 5.006746 CCCTATTATCTTTCACAACACGAGC 59.993 44.000 0.00 0.00 0.00 5.03
4115 10591 7.687941 ACTCACACAAAATAATGTTCCCTAG 57.312 36.000 0.00 0.00 0.00 3.02
4175 10651 5.091431 GCAGATGATGTTGTTTAGCAAGAC 58.909 41.667 0.00 0.00 37.83 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
536 562 1.303317 CGGGTTAGCCAGCTTTGGT 60.303 57.895 0.00 0.00 36.17 3.67
613 645 0.387202 CGCTGGCTGCTATAGAGTGT 59.613 55.000 14.58 0.00 40.11 3.55
618 650 1.212616 GTTGACGCTGGCTGCTATAG 58.787 55.000 14.58 0.00 40.11 1.31
630 5816 2.159272 GAACGTGGAGCTGTTGACGC 62.159 60.000 0.00 0.00 35.21 5.19
639 5825 1.333619 ACAAACATGTGAACGTGGAGC 59.666 47.619 0.00 0.00 37.19 4.70
651 5837 5.586243 CCAGAGGGAGTACAATACAAACATG 59.414 44.000 0.00 0.00 35.59 3.21
653 5839 4.595781 ACCAGAGGGAGTACAATACAAACA 59.404 41.667 0.00 0.00 38.05 2.83
673 5859 6.203530 GTGCACTGTACGATATACTACTACCA 59.796 42.308 10.32 0.00 0.00 3.25
717 5907 2.178912 TGGCTGCTAACGCTAAAGTT 57.821 45.000 0.00 0.00 38.07 2.66
774 5968 5.680151 GCTGAAGTGACAGTAGGTAAGATCC 60.680 48.000 0.00 0.00 39.73 3.36
775 5969 5.344884 GCTGAAGTGACAGTAGGTAAGATC 58.655 45.833 0.00 0.00 39.73 2.75
791 5985 0.734253 GTCATCGCTGACGCTGAAGT 60.734 55.000 3.30 0.00 45.08 3.01
792 5986 1.994467 GTCATCGCTGACGCTGAAG 59.006 57.895 3.30 0.00 45.08 3.02
793 5987 4.169102 GTCATCGCTGACGCTGAA 57.831 55.556 3.30 0.00 45.08 3.02
810 6004 1.670811 ACTTGAAAGTGTCCTTGCACG 59.329 47.619 0.00 0.00 43.61 5.34
811 6005 3.782889 AACTTGAAAGTGTCCTTGCAC 57.217 42.857 0.00 0.00 35.89 4.57
812 6006 3.761218 TGAAACTTGAAAGTGTCCTTGCA 59.239 39.130 10.23 0.00 41.62 4.08
813 6007 4.370364 TGAAACTTGAAAGTGTCCTTGC 57.630 40.909 10.23 0.00 41.62 4.01
814 6008 5.801947 CAGTTGAAACTTGAAAGTGTCCTTG 59.198 40.000 10.23 3.66 41.62 3.61
815 6009 5.622233 GCAGTTGAAACTTGAAAGTGTCCTT 60.622 40.000 10.23 0.00 41.62 3.36
819 6013 4.380867 CCAGCAGTTGAAACTTGAAAGTGT 60.381 41.667 0.00 0.00 39.66 3.55
847 6041 3.118956 GGTTGGTGGTGAATGACAAACAA 60.119 43.478 0.00 0.00 0.00 2.83
849 6043 2.693074 AGGTTGGTGGTGAATGACAAAC 59.307 45.455 0.00 0.00 0.00 2.93
880 6074 6.057627 ACATACAGATAACTAACGACGGAG 57.942 41.667 0.00 0.00 0.00 4.63
881 6075 6.538381 TGTACATACAGATAACTAACGACGGA 59.462 38.462 0.00 0.00 0.00 4.69
882 6076 6.630443 GTGTACATACAGATAACTAACGACGG 59.370 42.308 0.00 0.00 36.78 4.79
883 6077 7.182089 TGTGTACATACAGATAACTAACGACG 58.818 38.462 0.00 0.00 36.78 5.12
897 6091 7.561251 ACCTGCATTTATACTGTGTACATACA 58.439 34.615 0.00 0.00 0.00 2.29
898 6092 8.433421 AACCTGCATTTATACTGTGTACATAC 57.567 34.615 0.00 0.00 0.00 2.39
899 6093 8.482943 AGAACCTGCATTTATACTGTGTACATA 58.517 33.333 0.00 0.00 0.00 2.29
900 6094 7.338710 AGAACCTGCATTTATACTGTGTACAT 58.661 34.615 0.00 0.00 0.00 2.29
931 6125 2.401766 GCTCCGGATGTTGCCACTG 61.402 63.158 3.57 0.00 0.00 3.66
956 6150 2.563471 AGAGAACGACGATTGGCTAC 57.437 50.000 0.00 0.00 0.00 3.58
961 6155 0.640768 GGCGAAGAGAACGACGATTG 59.359 55.000 0.00 0.00 0.00 2.67
974 6168 1.741706 TCAGTACCTCTAACGGCGAAG 59.258 52.381 16.62 11.01 0.00 3.79
977 6171 1.333881 CGATCAGTACCTCTAACGGCG 60.334 57.143 4.80 4.80 0.00 6.46
982 6176 4.750598 CGACATCTCGATCAGTACCTCTAA 59.249 45.833 0.00 0.00 43.06 2.10
983 6177 4.308265 CGACATCTCGATCAGTACCTCTA 58.692 47.826 0.00 0.00 43.06 2.43
1150 6350 6.166279 TGGAGTGCATAAGAAACAGAACTAG 58.834 40.000 0.00 0.00 0.00 2.57
1151 6351 6.109156 TGGAGTGCATAAGAAACAGAACTA 57.891 37.500 0.00 0.00 0.00 2.24
1152 6352 4.973168 TGGAGTGCATAAGAAACAGAACT 58.027 39.130 0.00 0.00 0.00 3.01
1162 6362 3.119708 GGAAGTTTGCTGGAGTGCATAAG 60.120 47.826 0.00 0.00 42.96 1.73
1209 6433 4.860907 GCAGTCATAAAAAGAACATGGCAG 59.139 41.667 0.00 0.00 0.00 4.85
1292 6550 4.202141 TGGATCAAAAACAGTTTCCAGCAG 60.202 41.667 0.00 0.00 0.00 4.24
1384 6654 1.080298 GCCAAGCGCTTGCAAATCT 60.080 52.632 38.53 6.37 42.66 2.40
1492 6762 1.268896 GCTGCATCGATGTTCATTGGG 60.269 52.381 25.47 6.48 0.00 4.12
1495 6765 2.635714 TCTGCTGCATCGATGTTCATT 58.364 42.857 25.47 0.00 0.00 2.57
1542 6815 4.229096 TCGTGCAAATGAAAGCAAAGATC 58.771 39.130 0.00 0.00 43.20 2.75
1548 6821 1.728825 GCGATCGTGCAAATGAAAGCA 60.729 47.619 17.81 0.00 38.65 3.91
1663 6951 7.838771 AATTCTTTGGCTGAGAATAATTTGC 57.161 32.000 13.62 0.00 41.66 3.68
1698 6992 2.154462 GTGACATCAGGGTGAACAAGG 58.846 52.381 0.00 0.00 0.00 3.61
1714 7008 1.298859 GGCCACGTGAAGGATGTGAC 61.299 60.000 19.30 0.00 43.44 3.67
1718 7012 0.036010 AGAAGGCCACGTGAAGGATG 60.036 55.000 19.30 0.00 0.00 3.51
1719 7013 0.036010 CAGAAGGCCACGTGAAGGAT 60.036 55.000 19.30 0.00 0.00 3.24
1727 7021 1.135575 GCTTTTGATCAGAAGGCCACG 60.136 52.381 23.26 2.86 0.00 4.94
1733 7027 2.669391 GCCGTTGGCTTTTGATCAGAAG 60.669 50.000 19.15 19.15 46.69 2.85
1757 7448 0.106708 TTTTCTGTCAGCTGCGGAGT 59.893 50.000 9.47 0.00 0.00 3.85
1797 7488 6.568869 TGGCATAAATGATAAAAACCCTTCG 58.431 36.000 0.00 0.00 0.00 3.79
1798 7489 8.962884 AATGGCATAAATGATAAAAACCCTTC 57.037 30.769 0.00 0.00 0.00 3.46
1825 7516 9.295825 TGGTAAAACTGAATAATGAGACACAAT 57.704 29.630 0.00 0.00 0.00 2.71
1931 7622 7.925993 TGAACAAAAATCTAACAGAACGATGT 58.074 30.769 0.00 0.00 33.96 3.06
1948 7639 8.674263 ATGTCTAATGGCATTTTTGAACAAAA 57.326 26.923 19.21 8.37 38.40 2.44
1953 7644 9.941325 ATAACAATGTCTAATGGCATTTTTGAA 57.059 25.926 19.21 0.00 33.55 2.69
2078 7769 3.695830 ATTCGCTTGGTTACTCCTGAA 57.304 42.857 0.00 0.00 37.07 3.02
2108 7799 6.488683 TGATCCCAACAACGTTCTTATTTTCT 59.511 34.615 0.00 0.00 0.00 2.52
2208 7905 6.889301 TTGTGATCTCAAATCTCTTTTGCT 57.111 33.333 7.72 0.00 43.68 3.91
2233 7930 7.280876 TGCTCAAAAATACCACTAGACATCATC 59.719 37.037 0.00 0.00 0.00 2.92
2241 7938 6.372659 AGACACATGCTCAAAAATACCACTAG 59.627 38.462 0.00 0.00 0.00 2.57
2272 7969 6.142139 TCAACTGCTCAAAAATAACATCGTG 58.858 36.000 0.00 0.00 0.00 4.35
2273 7970 6.312399 TCAACTGCTCAAAAATAACATCGT 57.688 33.333 0.00 0.00 0.00 3.73
2305 8003 2.375174 TCCCACTACTCAGTTTTGCCAT 59.625 45.455 0.00 0.00 30.46 4.40
2337 8035 2.458951 GCTCGATGTAGAGTTGAGCTG 58.541 52.381 0.00 0.00 45.53 4.24
2338 8036 1.064803 CGCTCGATGTAGAGTTGAGCT 59.935 52.381 12.13 0.00 46.38 4.09
2339 8037 1.064208 TCGCTCGATGTAGAGTTGAGC 59.936 52.381 5.49 5.49 45.53 4.26
2340 8038 3.295785 CATCGCTCGATGTAGAGTTGAG 58.704 50.000 20.48 0.00 44.93 3.02
2341 8039 3.340337 CATCGCTCGATGTAGAGTTGA 57.660 47.619 20.48 0.00 44.93 3.18
2400 8105 7.042992 CGCCAGACACAAGACGATATAAAATTA 60.043 37.037 0.00 0.00 0.00 1.40
2414 8119 2.031012 TCTGCCGCCAGACACAAG 59.969 61.111 0.00 0.00 42.98 3.16
2493 8200 3.162858 ACCCGTTTCACCGTCCCA 61.163 61.111 0.00 0.00 0.00 4.37
2649 8358 0.322648 AGATAGCAGCTGCACACACA 59.677 50.000 38.24 16.98 45.16 3.72
2650 8359 1.005340 GAGATAGCAGCTGCACACAC 58.995 55.000 38.24 23.23 45.16 3.82
2651 8360 0.900421 AGAGATAGCAGCTGCACACA 59.100 50.000 38.24 21.19 45.16 3.72
2652 8361 1.136695 AGAGAGATAGCAGCTGCACAC 59.863 52.381 38.24 26.51 45.16 3.82
2673 8382 7.959658 ATTTCCATGAATGTAAATGTCTGGA 57.040 32.000 0.00 0.00 27.23 3.86
2714 8425 9.593134 TGTAAATTACGTACATAAAACGGGTAT 57.407 29.630 0.00 0.00 44.48 2.73
2940 8655 1.986378 CGACCGAGCTGTAGAAACAAG 59.014 52.381 0.00 0.00 34.49 3.16
2947 8662 1.874345 AACCACCGACCGAGCTGTAG 61.874 60.000 0.00 0.00 0.00 2.74
2960 8676 0.108585 TCTCTCAGTTGGCAACCACC 59.891 55.000 25.81 1.80 30.78 4.61
3015 8731 2.808543 GACACCATGTCAGAAGAACACC 59.191 50.000 4.08 0.00 46.22 4.16
3137 8853 3.876198 CACCTTGGCGCGGCATAC 61.876 66.667 36.56 3.72 0.00 2.39
3239 8955 8.950210 CACATTGTATTGTGGATACTTCTCTTT 58.050 33.333 0.00 0.00 42.63 2.52
3240 8956 7.066284 GCACATTGTATTGTGGATACTTCTCTT 59.934 37.037 6.70 0.00 45.69 2.85
3401 9123 2.547211 CTCAGAAGACAGGCACACTTTG 59.453 50.000 0.00 0.00 0.00 2.77
3410 9132 3.734597 CGATGAGCTTCTCAGAAGACAGG 60.735 52.174 19.27 9.30 44.08 4.00
3416 9138 0.826715 CCCCGATGAGCTTCTCAGAA 59.173 55.000 2.85 0.00 44.08 3.02
3473 9195 2.814280 ACTCGACGAGGTTGTCAAAT 57.186 45.000 27.39 1.40 38.84 2.32
3535 9257 3.434641 CGGTCACATATTGATCATCAGCC 59.565 47.826 0.00 0.00 34.61 4.85
3541 9263 4.479786 TGTTCCGGTCACATATTGATCA 57.520 40.909 0.00 0.00 34.61 2.92
3593 9315 4.436242 TTTACAAAAACACAAGCACGGA 57.564 36.364 0.00 0.00 0.00 4.69
3609 9332 8.752187 ACTCGGGTACTAACATCTTATTTTACA 58.248 33.333 0.00 0.00 0.00 2.41
3632 9355 1.689273 ATCCTCGGGATAGTGCAACTC 59.311 52.381 3.85 0.00 37.63 3.01
3650 10112 1.120530 TTTCCTGTAGCCCGAGGATC 58.879 55.000 0.00 0.00 38.21 3.36
3657 10119 6.826741 TGTAGAAAACATATTTCCTGTAGCCC 59.173 38.462 0.00 0.00 31.43 5.19
3658 10120 7.859325 TGTAGAAAACATATTTCCTGTAGCC 57.141 36.000 0.00 0.00 31.43 3.93
3668 10130 8.262227 TGATCCCGTAGTTGTAGAAAACATATT 58.738 33.333 0.00 0.00 38.10 1.28
3671 10133 5.873164 GTGATCCCGTAGTTGTAGAAAACAT 59.127 40.000 0.00 0.00 38.10 2.71
3677 10139 2.381911 GGGTGATCCCGTAGTTGTAGA 58.618 52.381 0.00 0.00 44.74 2.59
3689 10151 5.014123 TGGATAGAATATGTTGGGGTGATCC 59.986 44.000 0.00 0.00 0.00 3.36
3694 10156 4.844085 TCGATGGATAGAATATGTTGGGGT 59.156 41.667 0.00 0.00 0.00 4.95
3717 10179 5.453762 GCCGGTGGTTAGGTAGTTGTATATT 60.454 44.000 1.90 0.00 0.00 1.28
3718 10180 4.039609 GCCGGTGGTTAGGTAGTTGTATAT 59.960 45.833 1.90 0.00 0.00 0.86
3719 10181 3.384467 GCCGGTGGTTAGGTAGTTGTATA 59.616 47.826 1.90 0.00 0.00 1.47
3741 10203 3.307480 CCTTTATATAAGTCGCCAGGGGG 60.307 52.174 3.14 0.00 37.18 5.40
3742 10204 3.326880 ACCTTTATATAAGTCGCCAGGGG 59.673 47.826 11.56 0.00 0.00 4.79
3764 10226 5.496556 TCTCTTCCAGTGAAAACTTGTTCA 58.503 37.500 0.00 0.00 35.14 3.18
3779 10241 1.289066 CGCGTGACCTTCTCTTCCA 59.711 57.895 0.00 0.00 0.00 3.53
3809 10271 6.417258 TGCAATGGAGTTTTCTGATCTATCA 58.583 36.000 0.00 0.00 35.16 2.15
3842 10315 9.860650 TGCCTACCTATGTTTGTTTGATAATAT 57.139 29.630 0.00 0.00 0.00 1.28
3850 10323 3.447229 GGCATGCCTACCTATGTTTGTTT 59.553 43.478 29.98 0.00 0.00 2.83
3857 10330 2.636830 GCTATGGCATGCCTACCTATG 58.363 52.381 35.53 18.95 38.54 2.23
3870 10343 2.820787 ACGTATGAGTAGAGGCTATGGC 59.179 50.000 0.00 0.00 37.82 4.40
3871 10344 3.191581 CCACGTATGAGTAGAGGCTATGG 59.808 52.174 0.00 0.00 0.00 2.74
3877 10350 2.933573 AGACCCACGTATGAGTAGAGG 58.066 52.381 0.00 0.00 0.00 3.69
3878 10351 5.221009 GGTTTAGACCCACGTATGAGTAGAG 60.221 48.000 0.00 0.00 40.25 2.43
3882 10355 3.881937 GGTTTAGACCCACGTATGAGT 57.118 47.619 0.00 0.00 40.25 3.41
3913 10387 5.349061 TCAGCAGTGATGATGACATAGTT 57.651 39.130 7.06 0.00 36.82 2.24
3929 10403 3.683822 GTCCAAAGAGATCTTGTCAGCAG 59.316 47.826 0.00 0.00 36.12 4.24
3933 10407 2.305927 GGGGTCCAAAGAGATCTTGTCA 59.694 50.000 0.00 0.00 36.12 3.58
3950 10424 1.247600 TAATAGGGAGGGGGTGGGGT 61.248 60.000 0.00 0.00 0.00 4.95
3964 10439 5.718246 CGCTCGTGTTGTGAAAGATAATAG 58.282 41.667 0.00 0.00 0.00 1.73
3974 10449 0.599991 AATGAGCGCTCGTGTTGTGA 60.600 50.000 31.62 12.60 0.00 3.58
4009 10485 6.786967 AATAGATGAGGCAAATCTTTTGCT 57.213 33.333 20.56 9.75 44.36 3.91
4051 10527 5.351948 AAAAGTGTGCCCTTGTAACAAAT 57.648 34.783 0.00 0.00 0.00 2.32
4115 10591 2.258726 ACCGCCGGAGCAGAAAAAC 61.259 57.895 11.71 0.00 39.83 2.43
4175 10651 3.245668 AAGAGTGCTCCGCCACCAG 62.246 63.158 0.00 0.00 36.38 4.00
4270 10746 4.096003 CGCCGGAGTCCCCAACAT 62.096 66.667 5.05 0.00 34.14 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.