Multiple sequence alignment - TraesCS2A01G481700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G481700 chr2A 100.000 3080 0 0 1 3080 718817748 718820827 0.000000e+00 5688.0
1 TraesCS2A01G481700 chr2A 84.577 402 55 5 2176 2577 718836372 718836766 2.880000e-105 392.0
2 TraesCS2A01G481700 chr2A 89.552 201 19 2 1306 1504 718883961 718884161 1.420000e-63 254.0
3 TraesCS2A01G481700 chr2A 84.834 211 29 3 1862 2071 718918236 718918444 3.110000e-50 209.0
4 TraesCS2A01G481700 chr2A 89.933 149 14 1 995 1143 718834021 718834168 1.130000e-44 191.0
5 TraesCS2A01G481700 chr2A 83.854 192 31 0 1312 1503 718837871 718838062 1.890000e-42 183.0
6 TraesCS2A01G481700 chr2A 84.810 158 22 2 1000 1157 718929214 718929369 1.140000e-34 158.0
7 TraesCS2A01G481700 chr2A 80.711 197 36 2 1306 1501 718729237 718729432 5.320000e-33 152.0
8 TraesCS2A01G481700 chr2A 84.768 151 23 0 1000 1150 718916821 718916971 5.320000e-33 152.0
9 TraesCS2A01G481700 chr2B 92.954 738 31 12 2 733 704411013 704411735 0.000000e+00 1055.0
10 TraesCS2A01G481700 chr2B 86.763 899 79 21 797 1665 704411984 704412872 0.000000e+00 965.0
11 TraesCS2A01G481700 chr2B 91.021 568 39 8 2136 2699 704413672 704414231 0.000000e+00 756.0
12 TraesCS2A01G481700 chr2B 88.921 343 29 3 1737 2079 704413006 704413339 6.140000e-112 414.0
13 TraesCS2A01G481700 chr2B 88.000 200 24 0 1306 1505 704579983 704580182 1.430000e-58 237.0
14 TraesCS2A01G481700 chr2B 84.466 206 30 2 1867 2071 704728750 704728954 5.210000e-48 202.0
15 TraesCS2A01G481700 chr2B 83.838 198 31 1 1306 1503 704426316 704426512 1.460000e-43 187.0
16 TraesCS2A01G481700 chr2B 85.235 149 22 0 992 1140 704425915 704426063 1.480000e-33 154.0
17 TraesCS2A01G481700 chr2B 82.184 174 27 4 1887 2058 704117095 704117266 2.470000e-31 147.0
18 TraesCS2A01G481700 chr2B 81.421 183 31 3 1887 2068 704129779 704129959 2.470000e-31 147.0
19 TraesCS2A01G481700 chr2B 91.429 105 9 0 2686 2790 357167802 357167906 8.900000e-31 145.0
20 TraesCS2A01G481700 chr2B 82.530 166 28 1 1000 1164 704967798 704967963 8.900000e-31 145.0
21 TraesCS2A01G481700 chr2B 80.814 172 31 2 1887 2057 704238570 704238740 1.930000e-27 134.0
22 TraesCS2A01G481700 chr2B 84.404 109 11 4 746 848 28506297 28506405 5.430000e-18 102.0
23 TraesCS2A01G481700 chr2B 82.727 110 10 7 746 848 154226695 154226588 4.230000e-14 89.8
24 TraesCS2A01G481700 chr2D 86.820 607 49 13 926 1503 584606740 584607344 0.000000e+00 649.0
25 TraesCS2A01G481700 chr2D 84.468 573 67 15 2136 2699 584608106 584608665 2.090000e-151 545.0
26 TraesCS2A01G481700 chr2D 89.826 344 30 4 131 474 584596308 584596646 1.310000e-118 436.0
27 TraesCS2A01G481700 chr2D 91.416 233 19 1 1848 2079 584607540 584607772 4.960000e-83 318.0
28 TraesCS2A01G481700 chr2D 89.500 200 21 0 1306 1505 584657547 584657746 1.420000e-63 254.0
29 TraesCS2A01G481700 chr2D 88.083 193 22 1 1313 1505 584661703 584661894 8.590000e-56 228.0
30 TraesCS2A01G481700 chr2D 84.360 211 31 2 1862 2071 594997989 594997780 4.030000e-49 206.0
31 TraesCS2A01G481700 chr2D 93.284 134 9 0 3 136 584547423 584547556 6.740000e-47 198.0
32 TraesCS2A01G481700 chr2D 85.443 158 22 1 1020 1176 584668261 584668418 2.460000e-36 163.0
33 TraesCS2A01G481700 chr2D 85.065 154 23 0 1020 1173 594999263 594999110 1.140000e-34 158.0
34 TraesCS2A01G481700 chr2D 88.785 107 10 2 2684 2788 169665942 169666048 2.490000e-26 130.0
35 TraesCS2A01G481700 chr2D 80.702 171 29 4 1887 2055 584530864 584531032 2.490000e-26 130.0
36 TraesCS2A01G481700 chr3D 82.102 352 44 15 1 338 142997768 142998114 1.810000e-72 283.0
37 TraesCS2A01G481700 chr3D 81.073 354 48 13 6 346 360691884 360691537 6.550000e-67 265.0
38 TraesCS2A01G481700 chr3B 81.690 355 47 13 6 346 204847884 204848234 2.340000e-71 279.0
39 TraesCS2A01G481700 chr3B 79.050 358 57 12 1 346 469631118 469630767 2.390000e-56 230.0
40 TraesCS2A01G481700 chr3B 92.473 93 6 1 2697 2788 758917899 758917991 6.930000e-27 132.0
41 TraesCS2A01G481700 chr3B 83.486 109 12 4 746 848 25931288 25931180 2.530000e-16 97.1
42 TraesCS2A01G481700 chr3B 83.486 109 12 5 746 848 26067173 26067065 2.530000e-16 97.1
43 TraesCS2A01G481700 chr3B 83.486 109 12 5 746 848 26256473 26256365 2.530000e-16 97.1
44 TraesCS2A01G481700 chr3B 98.077 52 1 0 2797 2848 145887837 145887786 1.180000e-14 91.6
45 TraesCS2A01G481700 chr3A 80.882 340 38 14 1 325 162751749 162752076 3.070000e-60 243.0
46 TraesCS2A01G481700 chr6A 87.156 109 8 4 2680 2786 287307368 287307264 5.400000e-23 119.0
47 TraesCS2A01G481700 chr6A 83.036 112 11 7 744 848 491022595 491022485 9.090000e-16 95.3
48 TraesCS2A01G481700 chr1B 86.486 111 11 4 2682 2789 616771916 616772025 5.400000e-23 119.0
49 TraesCS2A01G481700 chr1B 86.139 101 9 3 2683 2783 143612517 143612612 1.510000e-18 104.0
50 TraesCS2A01G481700 chr4D 89.011 91 7 3 2694 2782 483303373 483303462 3.250000e-20 110.0
51 TraesCS2A01G481700 chr4D 84.615 104 10 4 751 848 72393022 72393125 7.030000e-17 99.0
52 TraesCS2A01G481700 chr4D 82.143 112 19 1 736 847 488741064 488740954 9.090000e-16 95.3
53 TraesCS2A01G481700 chr5B 85.437 103 15 0 2681 2783 44880580 44880682 1.170000e-19 108.0
54 TraesCS2A01G481700 chr4A 85.849 106 10 5 2685 2788 658765411 658765309 1.170000e-19 108.0
55 TraesCS2A01G481700 chrUn 83.486 109 12 5 746 848 437043022 437043130 2.530000e-16 97.1
56 TraesCS2A01G481700 chrUn 100.000 47 0 0 2797 2843 425170348 425170394 1.520000e-13 87.9
57 TraesCS2A01G481700 chr7D 100.000 49 0 0 2797 2845 48465608 48465656 1.180000e-14 91.6
58 TraesCS2A01G481700 chr5A 95.918 49 2 0 2797 2845 521368634 521368586 2.550000e-11 80.5
59 TraesCS2A01G481700 chr7A 90.909 55 5 0 2797 2851 137020011 137019957 1.180000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G481700 chr2A 718817748 718820827 3079 False 5688.000000 5688 100.000000 1 3080 1 chr2A.!!$F2 3079
1 TraesCS2A01G481700 chr2A 718834021 718838062 4041 False 255.333333 392 86.121333 995 2577 3 chr2A.!!$F5 1582
2 TraesCS2A01G481700 chr2B 704411013 704414231 3218 False 797.500000 1055 89.914750 2 2699 4 chr2B.!!$F9 2697
3 TraesCS2A01G481700 chr2D 584606740 584608665 1925 False 504.000000 649 87.568000 926 2699 3 chr2D.!!$F6 1773
4 TraesCS2A01G481700 chr2D 584657547 584661894 4347 False 241.000000 254 88.791500 1306 1505 2 chr2D.!!$F7 199

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
352 353 0.438830 CGAAGTAGTCAAACGCCTGC 59.561 55.0 0.0 0.0 0.00 4.85 F
1692 3013 0.107703 GACTTGGGATCATGTCGGCA 60.108 55.0 0.0 0.0 37.98 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 3223 0.109781 CGGGCTTGTTCGATTTGGTG 60.110 55.0 0.0 0.0 0.0 4.17 R
2931 6931 0.033011 TCCTTTCCTCTCCTCCCGAG 60.033 60.0 0.0 0.0 40.3 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
169 170 3.636231 CCGGTGAGGTCCCTGCAA 61.636 66.667 0.00 0.00 34.51 4.08
293 294 0.892063 GATCTCCTGCGGGTAGATCC 59.108 60.000 27.32 17.14 38.66 3.36
328 329 1.352404 CGTCGCCTCGAAGTCTAGG 59.648 63.158 0.00 0.00 37.72 3.02
352 353 0.438830 CGAAGTAGTCAAACGCCTGC 59.561 55.000 0.00 0.00 0.00 4.85
353 354 0.438830 GAAGTAGTCAAACGCCTGCG 59.561 55.000 10.40 10.40 46.03 5.18
513 514 2.952978 AGGATGTACTACTCAGGAAGCG 59.047 50.000 0.00 0.00 0.00 4.68
517 518 1.015109 TACTACTCAGGAAGCGAGCG 58.985 55.000 0.00 0.00 33.58 5.03
518 519 0.677098 ACTACTCAGGAAGCGAGCGA 60.677 55.000 0.00 0.00 33.58 4.93
519 520 0.452184 CTACTCAGGAAGCGAGCGAA 59.548 55.000 0.00 0.00 33.58 4.70
538 539 0.949105 AGCAGCGGGTCAAGTTTACG 60.949 55.000 0.00 0.00 0.00 3.18
546 547 2.419667 GGTCAAGTTTACGCTAGGCAA 58.580 47.619 0.00 0.00 0.00 4.52
567 568 8.224720 AGGCAAGATAAGTAATGGGCTAATAAA 58.775 33.333 0.00 0.00 0.00 1.40
569 570 9.678941 GCAAGATAAGTAATGGGCTAATAAAAC 57.321 33.333 0.00 0.00 0.00 2.43
615 620 8.789881 TTGAATAATTAACCGAACAACAACTG 57.210 30.769 0.00 0.00 0.00 3.16
625 630 2.939460 ACAACAACTGAGCAAACCAC 57.061 45.000 0.00 0.00 0.00 4.16
635 640 2.962421 TGAGCAAACCACCTTTTTAGGG 59.038 45.455 0.00 0.00 0.00 3.53
691 698 1.603802 CACAACCGAGACAAGTTGCAT 59.396 47.619 1.81 0.00 45.79 3.96
750 774 5.954434 TCGTTCGTTTATTATTTCCTCCG 57.046 39.130 0.00 0.00 0.00 4.63
767 791 5.484715 TCCTCCGTTCCTAAATACAAGTTG 58.515 41.667 0.00 0.00 0.00 3.16
773 797 8.776470 TCCGTTCCTAAATACAAGTTGTTTTAG 58.224 33.333 25.03 25.03 34.52 1.85
785 809 8.911247 ACAAGTTGTTTTAGAGATTTCAACAC 57.089 30.769 1.64 0.00 37.97 3.32
786 810 7.696453 ACAAGTTGTTTTAGAGATTTCAACACG 59.304 33.333 1.64 0.00 37.97 4.49
790 814 7.310072 TGTTTTAGAGATTTCAACACGAACA 57.690 32.000 0.00 0.00 31.73 3.18
792 816 8.237949 TGTTTTAGAGATTTCAACACGAACAAA 58.762 29.630 0.00 0.00 31.73 2.83
845 1036 9.378551 AGATTCACTTATTTTGCTTCGTATGTA 57.621 29.630 0.00 0.00 0.00 2.29
846 1037 9.638300 GATTCACTTATTTTGCTTCGTATGTAG 57.362 33.333 0.00 0.00 0.00 2.74
847 1038 8.542497 TTCACTTATTTTGCTTCGTATGTAGT 57.458 30.769 0.00 0.00 0.00 2.73
848 1039 9.642327 TTCACTTATTTTGCTTCGTATGTAGTA 57.358 29.630 0.00 0.00 0.00 1.82
858 1049 8.797266 TGCTTCGTATGTAGTAGTTCATATTG 57.203 34.615 0.81 0.00 0.00 1.90
860 1051 8.903723 GCTTCGTATGTAGTAGTTCATATTGAC 58.096 37.037 0.81 0.00 0.00 3.18
896 1101 2.932614 CAAGTGAGTACTATGCAGCACC 59.067 50.000 0.00 0.00 35.69 5.01
898 1103 3.632333 AGTGAGTACTATGCAGCACCTA 58.368 45.455 0.00 0.00 34.74 3.08
904 1109 4.651503 AGTACTATGCAGCACCTATCACTT 59.348 41.667 0.00 0.00 0.00 3.16
908 1113 2.703416 TGCAGCACCTATCACTTTCAG 58.297 47.619 0.00 0.00 0.00 3.02
909 1114 2.038952 TGCAGCACCTATCACTTTCAGT 59.961 45.455 0.00 0.00 0.00 3.41
917 1122 3.820467 CCTATCACTTTCAGTGTGCCAAA 59.180 43.478 3.87 0.00 46.03 3.28
930 1135 1.260538 TGCCAAACTGCCAACAACCA 61.261 50.000 0.00 0.00 0.00 3.67
959 1164 3.946907 GGAACGACCTCACAACCG 58.053 61.111 0.00 0.00 35.41 4.44
961 1166 1.219522 GGAACGACCTCACAACCGTG 61.220 60.000 0.00 0.00 45.08 4.94
989 1199 1.221523 AGGTGAGCTAGGGGATCATCA 59.778 52.381 0.00 0.00 43.28 3.07
990 1200 1.346068 GGTGAGCTAGGGGATCATCAC 59.654 57.143 0.00 0.00 42.56 3.06
1199 1701 5.597813 TTTTTCTCTTCAGAGTTCGATGC 57.402 39.130 3.73 0.00 42.60 3.91
1211 1721 2.003301 GTTCGATGCAGGTTCTTCCTC 58.997 52.381 0.00 0.00 46.24 3.71
1225 1766 5.272397 GTTCTTCCTCGTTTAGTCTATCCG 58.728 45.833 0.00 0.00 0.00 4.18
1229 1770 3.624861 TCCTCGTTTAGTCTATCCGTCAC 59.375 47.826 0.00 0.00 0.00 3.67
1281 1826 4.630111 CTTGCCAAGCCTTTGAAAACATA 58.370 39.130 0.00 0.00 36.36 2.29
1375 2662 2.555547 GGACTTGCAAGCGCTTGGT 61.556 57.895 41.83 33.05 40.74 3.67
1419 2706 0.973632 TTGGACGAAGAAGGCAGCTA 59.026 50.000 0.00 0.00 0.00 3.32
1438 2725 2.434359 GACGAGGCAGTTTCCGGG 60.434 66.667 0.00 0.00 0.00 5.73
1507 2794 2.859992 CCCTGAGGTAAACAGCTGC 58.140 57.895 15.27 0.00 34.47 5.25
1537 2824 1.227943 ACCGCAAGAGCAAGCTTCA 60.228 52.632 0.00 0.00 42.27 3.02
1572 2863 1.347707 ACTGTTCTTCCGGCATCTGAA 59.652 47.619 0.00 0.00 0.00 3.02
1573 2864 1.734465 CTGTTCTTCCGGCATCTGAAC 59.266 52.381 0.00 7.20 37.92 3.18
1579 2870 1.266178 TCCGGCATCTGAACTCTGAA 58.734 50.000 0.00 0.00 0.00 3.02
1642 2933 1.737735 TTGTCAGCGCCATCACTCG 60.738 57.895 2.29 0.00 0.00 4.18
1684 3005 3.135348 CAGCCATAGAAGACTTGGGATCA 59.865 47.826 0.00 0.00 0.00 2.92
1688 3009 5.303971 CCATAGAAGACTTGGGATCATGTC 58.696 45.833 0.00 0.00 43.96 3.06
1692 3013 0.107703 GACTTGGGATCATGTCGGCA 60.108 55.000 0.00 0.00 37.98 5.69
1695 3016 0.107703 TTGGGATCATGTCGGCACTC 60.108 55.000 0.00 0.00 0.00 3.51
1724 3050 2.028420 GCATTTGGCAGGGGAAATTC 57.972 50.000 0.00 0.00 43.97 2.17
1725 3051 1.556451 GCATTTGGCAGGGGAAATTCT 59.444 47.619 0.00 0.00 43.97 2.40
1727 3053 2.692709 TTTGGCAGGGGAAATTCTCA 57.307 45.000 0.00 0.00 0.00 3.27
1730 3056 1.186200 GGCAGGGGAAATTCTCAACC 58.814 55.000 0.00 0.00 0.00 3.77
1731 3057 1.549950 GGCAGGGGAAATTCTCAACCA 60.550 52.381 0.00 0.00 0.00 3.67
1732 3058 2.460669 GCAGGGGAAATTCTCAACCAT 58.539 47.619 0.00 0.00 0.00 3.55
1733 3059 2.167075 GCAGGGGAAATTCTCAACCATG 59.833 50.000 0.00 0.00 0.00 3.66
1749 3153 2.634940 ACCATGTCTAATCCCCTCATCG 59.365 50.000 0.00 0.00 0.00 3.84
1768 3172 2.307392 TCGGGGAATTTGACAGGATTGA 59.693 45.455 0.00 0.00 0.00 2.57
1771 3175 3.448660 GGGGAATTTGACAGGATTGAAGG 59.551 47.826 0.00 0.00 0.00 3.46
1774 3178 5.163478 GGGAATTTGACAGGATTGAAGGATG 60.163 44.000 0.00 0.00 0.00 3.51
1778 3182 5.964958 TTGACAGGATTGAAGGATGTTTC 57.035 39.130 0.00 0.00 0.00 2.78
1779 3183 4.002982 TGACAGGATTGAAGGATGTTTCG 58.997 43.478 0.00 0.00 0.00 3.46
1819 3223 2.601905 CCCTCAATCCATTCAATCCCC 58.398 52.381 0.00 0.00 0.00 4.81
1836 3240 0.243636 CCCACCAAATCGAACAAGCC 59.756 55.000 0.00 0.00 0.00 4.35
1841 3245 2.686816 AAATCGAACAAGCCCGCGG 61.687 57.895 21.04 21.04 0.00 6.46
1856 3265 2.613595 CCCGCGGGGTTAACTTAATTAC 59.386 50.000 37.42 0.00 38.25 1.89
1859 3268 4.507756 CCGCGGGGTTAACTTAATTACTAC 59.492 45.833 20.10 0.00 0.00 2.73
1870 3279 7.500720 AACTTAATTACTACGCTTGGTGTTT 57.499 32.000 0.00 0.00 0.00 2.83
1893 3306 2.028658 GCTGCAGAGGGATATGATCGAA 60.029 50.000 20.43 0.00 0.00 3.71
1896 3309 2.676463 GCAGAGGGATATGATCGAAGCC 60.676 54.545 0.00 0.00 0.00 4.35
1912 3325 4.016706 CCGCCGTCCAAGGAACCT 62.017 66.667 0.00 0.00 0.00 3.50
1965 3378 1.153349 GGTGAAGCGGGTGATCCTC 60.153 63.158 0.00 0.00 0.00 3.71
2046 3459 2.600769 AGCTCCTGGTCCGACGTT 60.601 61.111 0.00 0.00 0.00 3.99
2102 3646 2.100991 CGGCGAGCAAATTCAGGC 59.899 61.111 0.00 0.00 0.00 4.85
2103 3647 2.401766 CGGCGAGCAAATTCAGGCT 61.402 57.895 0.00 0.00 44.48 4.58
2105 3649 1.308069 GGCGAGCAAATTCAGGCTGA 61.308 55.000 14.43 14.43 41.22 4.26
2106 3650 0.098376 GCGAGCAAATTCAGGCTGAG 59.902 55.000 17.91 7.21 41.22 3.35
2107 3651 1.730501 CGAGCAAATTCAGGCTGAGA 58.269 50.000 17.91 9.37 41.22 3.27
2109 3653 2.159599 CGAGCAAATTCAGGCTGAGAAC 60.160 50.000 17.91 7.09 41.22 3.01
2110 3654 2.816087 GAGCAAATTCAGGCTGAGAACA 59.184 45.455 17.91 2.84 41.22 3.18
2111 3655 2.555757 AGCAAATTCAGGCTGAGAACAC 59.444 45.455 17.91 8.84 39.30 3.32
2112 3656 2.352127 GCAAATTCAGGCTGAGAACACC 60.352 50.000 17.91 2.64 0.00 4.16
2113 3657 2.886523 CAAATTCAGGCTGAGAACACCA 59.113 45.455 17.91 0.79 0.00 4.17
2118 3781 2.373169 TCAGGCTGAGAACACCAATCTT 59.627 45.455 14.43 0.00 0.00 2.40
2120 3783 3.057736 CAGGCTGAGAACACCAATCTTTG 60.058 47.826 9.42 0.00 0.00 2.77
2133 3796 8.044060 ACACCAATCTTTGTGTTCAGTATATG 57.956 34.615 0.00 0.00 0.00 1.78
2134 3797 6.968904 CACCAATCTTTGTGTTCAGTATATGC 59.031 38.462 0.00 0.00 0.00 3.14
2154 3867 1.201910 CGTGTTGTCATACGCATGGTG 60.202 52.381 0.00 0.00 33.25 4.17
2155 3868 1.804151 GTGTTGTCATACGCATGGTGT 59.196 47.619 0.00 0.00 32.61 4.16
2156 3869 1.803555 TGTTGTCATACGCATGGTGTG 59.196 47.619 0.00 0.00 38.95 3.82
2172 3885 0.105964 TGTGTGTGTGCCTGTCCTAC 59.894 55.000 0.00 0.00 0.00 3.18
2177 3890 2.345991 GTGCCTGTCCTACGCCAA 59.654 61.111 0.00 0.00 0.00 4.52
2212 3925 4.844884 AGGCACAGATGGATATCATGATG 58.155 43.478 18.72 2.75 35.97 3.07
2266 3979 1.517257 CCACATCGACGACCTCTGC 60.517 63.158 0.00 0.00 0.00 4.26
2317 4030 2.107901 GTCCTCCTCGGGAAGATACCTA 59.892 54.545 0.00 0.00 37.10 3.08
2350 4063 0.466543 ACACCACCGTCTTGCAACTA 59.533 50.000 0.00 0.00 0.00 2.24
2397 4110 7.169158 ACCCACAATACAATATGAAACTTGG 57.831 36.000 0.00 0.00 0.00 3.61
2438 4151 6.839134 TCTGGCTGAAGAACTACCTGATAATA 59.161 38.462 0.00 0.00 0.00 0.98
2454 4169 6.468956 CCTGATAATACACGTGCATGTTTTTC 59.531 38.462 17.22 7.09 33.85 2.29
2507 4224 1.002069 TGCAGATTTGATGGGTCCCT 58.998 50.000 10.00 0.00 0.00 4.20
2547 4264 2.297315 TGTGTCGTCTGAGAAGCTCATT 59.703 45.455 0.00 0.00 39.92 2.57
2577 4322 4.319261 GGGTTTGTGTTCAAGTACGATGAC 60.319 45.833 4.18 2.16 34.88 3.06
2580 4325 3.649073 TGTGTTCAAGTACGATGACCTG 58.351 45.455 4.18 0.00 0.00 4.00
2618 4363 1.414181 CCTTGTCGAGTATGGCAGGAT 59.586 52.381 0.00 0.00 0.00 3.24
2619 4364 2.628178 CCTTGTCGAGTATGGCAGGATA 59.372 50.000 0.00 0.00 0.00 2.59
2629 4374 0.923358 TGGCAGGATAACGGGGATTT 59.077 50.000 0.00 0.00 0.00 2.17
2634 4379 3.686120 GCAGGATAACGGGGATTTTACCA 60.686 47.826 0.00 0.00 0.00 3.25
2662 4415 9.927668 ATTGATATGTACGTCATATGTTGATCA 57.072 29.630 18.86 11.88 46.14 2.92
2692 4445 6.294473 TGATCAGAGCAAAATAATCTCTCCC 58.706 40.000 0.00 0.00 35.19 4.30
2696 5941 8.038862 TCAGAGCAAAATAATCTCTCCCTAAT 57.961 34.615 0.00 0.00 35.19 1.73
2710 5955 9.877178 ATCTCTCCCTAATAATAATAAAGCACG 57.123 33.333 0.00 0.00 0.00 5.34
2711 5956 8.311836 TCTCTCCCTAATAATAATAAAGCACGG 58.688 37.037 0.00 0.00 0.00 4.94
2712 5957 8.197592 TCTCCCTAATAATAATAAAGCACGGA 57.802 34.615 0.00 0.00 0.00 4.69
2713 5958 8.822805 TCTCCCTAATAATAATAAAGCACGGAT 58.177 33.333 0.00 0.00 0.00 4.18
2714 5959 9.449719 CTCCCTAATAATAATAAAGCACGGATT 57.550 33.333 0.00 0.00 0.00 3.01
2715 5960 9.226606 TCCCTAATAATAATAAAGCACGGATTG 57.773 33.333 0.00 0.00 0.00 2.67
2716 5961 9.226606 CCCTAATAATAATAAAGCACGGATTGA 57.773 33.333 0.00 0.00 0.00 2.57
2719 5964 5.438761 AATAATAAAGCACGGATTGAGGC 57.561 39.130 0.00 0.00 0.00 4.70
2720 5965 2.717639 ATAAAGCACGGATTGAGGCT 57.282 45.000 0.00 0.00 38.45 4.58
2721 5966 2.024176 TAAAGCACGGATTGAGGCTC 57.976 50.000 7.79 7.79 35.11 4.70
2722 5967 0.326264 AAAGCACGGATTGAGGCTCT 59.674 50.000 16.72 0.00 35.11 4.09
2723 5968 0.392193 AAGCACGGATTGAGGCTCTG 60.392 55.000 16.72 5.43 35.11 3.35
2724 5969 1.817099 GCACGGATTGAGGCTCTGG 60.817 63.158 16.72 2.96 0.00 3.86
2725 5970 1.153289 CACGGATTGAGGCTCTGGG 60.153 63.158 16.72 3.31 0.00 4.45
2726 5971 1.613630 ACGGATTGAGGCTCTGGGT 60.614 57.895 16.72 3.94 0.00 4.51
2728 5973 0.462759 CGGATTGAGGCTCTGGGTTC 60.463 60.000 16.72 5.30 0.00 3.62
2729 5974 0.620556 GGATTGAGGCTCTGGGTTCA 59.379 55.000 16.72 0.00 0.00 3.18
2730 5975 1.680249 GGATTGAGGCTCTGGGTTCAC 60.680 57.143 16.72 0.00 0.00 3.18
2731 5976 0.329596 ATTGAGGCTCTGGGTTCACC 59.670 55.000 16.72 0.00 40.81 4.02
2732 5977 2.111999 TTGAGGCTCTGGGTTCACCG 62.112 60.000 16.72 0.00 44.64 4.94
2733 5978 2.526873 AGGCTCTGGGTTCACCGT 60.527 61.111 0.00 0.00 44.64 4.83
2734 5979 2.047179 GGCTCTGGGTTCACCGTC 60.047 66.667 0.00 0.00 44.64 4.79
2735 5980 2.432628 GCTCTGGGTTCACCGTCG 60.433 66.667 0.00 0.00 44.64 5.12
2736 5981 3.048602 CTCTGGGTTCACCGTCGT 58.951 61.111 0.00 0.00 44.64 4.34
2737 5982 1.372997 CTCTGGGTTCACCGTCGTG 60.373 63.158 0.00 0.00 44.64 4.35
2738 5983 2.357034 CTGGGTTCACCGTCGTGG 60.357 66.667 0.00 0.00 44.64 4.94
2739 5984 4.612412 TGGGTTCACCGTCGTGGC 62.612 66.667 0.00 0.00 44.64 5.01
2741 5986 4.955774 GGTTCACCGTCGTGGCGT 62.956 66.667 0.00 0.00 43.94 5.68
2742 5987 2.963320 GTTCACCGTCGTGGCGTT 60.963 61.111 0.00 0.00 43.94 4.84
2743 5988 2.202905 TTCACCGTCGTGGCGTTT 60.203 55.556 0.00 0.00 43.94 3.60
2744 5989 1.814586 TTCACCGTCGTGGCGTTTT 60.815 52.632 0.00 0.00 43.94 2.43
2745 5990 1.367599 TTCACCGTCGTGGCGTTTTT 61.368 50.000 0.00 0.00 43.94 1.94
2746 5991 0.529337 TCACCGTCGTGGCGTTTTTA 60.529 50.000 0.00 0.00 43.94 1.52
2747 5992 0.383368 CACCGTCGTGGCGTTTTTAC 60.383 55.000 0.00 0.00 43.94 2.01
2748 5993 0.809241 ACCGTCGTGGCGTTTTTACA 60.809 50.000 0.00 0.00 43.94 2.41
2749 5994 0.513820 CCGTCGTGGCGTTTTTACAT 59.486 50.000 0.00 0.00 0.00 2.29
2750 5995 1.725706 CCGTCGTGGCGTTTTTACATA 59.274 47.619 0.00 0.00 0.00 2.29
2751 5996 2.157279 CCGTCGTGGCGTTTTTACATAA 59.843 45.455 0.00 0.00 0.00 1.90
2752 5997 3.363772 CCGTCGTGGCGTTTTTACATAAA 60.364 43.478 0.00 0.00 0.00 1.40
2753 5998 3.836348 CGTCGTGGCGTTTTTACATAAAG 59.164 43.478 0.00 0.00 0.00 1.85
2754 5999 4.153256 GTCGTGGCGTTTTTACATAAAGG 58.847 43.478 0.00 0.00 0.00 3.11
2755 6000 3.814283 TCGTGGCGTTTTTACATAAAGGT 59.186 39.130 0.00 0.00 0.00 3.50
2756 6001 4.083908 TCGTGGCGTTTTTACATAAAGGTC 60.084 41.667 0.00 0.00 0.00 3.85
2757 6002 4.478699 GTGGCGTTTTTACATAAAGGTCC 58.521 43.478 0.00 0.00 29.11 4.46
2758 6003 3.506844 TGGCGTTTTTACATAAAGGTCCC 59.493 43.478 0.00 0.00 29.11 4.46
2759 6004 3.760151 GGCGTTTTTACATAAAGGTCCCT 59.240 43.478 0.00 0.00 0.00 4.20
2760 6005 4.380128 GGCGTTTTTACATAAAGGTCCCTG 60.380 45.833 0.00 0.00 0.00 4.45
2761 6006 4.216902 GCGTTTTTACATAAAGGTCCCTGT 59.783 41.667 0.00 0.00 0.00 4.00
2762 6007 5.695818 CGTTTTTACATAAAGGTCCCTGTG 58.304 41.667 0.00 0.00 0.00 3.66
2763 6008 5.466819 GTTTTTACATAAAGGTCCCTGTGC 58.533 41.667 0.00 0.00 0.00 4.57
2764 6009 4.650972 TTTACATAAAGGTCCCTGTGCT 57.349 40.909 0.00 0.00 0.00 4.40
2765 6010 4.650972 TTACATAAAGGTCCCTGTGCTT 57.349 40.909 0.00 0.00 0.00 3.91
2766 6011 3.525800 ACATAAAGGTCCCTGTGCTTT 57.474 42.857 0.00 0.00 0.00 3.51
2767 6012 3.844640 ACATAAAGGTCCCTGTGCTTTT 58.155 40.909 0.00 0.00 0.00 2.27
2768 6013 4.223144 ACATAAAGGTCCCTGTGCTTTTT 58.777 39.130 0.00 0.00 0.00 1.94
2769 6014 4.039124 ACATAAAGGTCCCTGTGCTTTTTG 59.961 41.667 0.00 0.00 0.00 2.44
2770 6015 2.159179 AAGGTCCCTGTGCTTTTTGT 57.841 45.000 0.00 0.00 0.00 2.83
2771 6016 1.402787 AGGTCCCTGTGCTTTTTGTG 58.597 50.000 0.00 0.00 0.00 3.33
2772 6017 1.064017 AGGTCCCTGTGCTTTTTGTGA 60.064 47.619 0.00 0.00 0.00 3.58
2773 6018 1.754226 GGTCCCTGTGCTTTTTGTGAA 59.246 47.619 0.00 0.00 0.00 3.18
2774 6019 2.365293 GGTCCCTGTGCTTTTTGTGAAT 59.635 45.455 0.00 0.00 0.00 2.57
2775 6020 3.181466 GGTCCCTGTGCTTTTTGTGAATT 60.181 43.478 0.00 0.00 0.00 2.17
2776 6021 4.038642 GGTCCCTGTGCTTTTTGTGAATTA 59.961 41.667 0.00 0.00 0.00 1.40
2777 6022 5.452636 GGTCCCTGTGCTTTTTGTGAATTAA 60.453 40.000 0.00 0.00 0.00 1.40
2778 6023 5.462068 GTCCCTGTGCTTTTTGTGAATTAAC 59.538 40.000 0.00 0.00 0.00 2.01
2779 6024 4.749598 CCCTGTGCTTTTTGTGAATTAACC 59.250 41.667 0.00 0.00 0.00 2.85
2780 6025 4.749598 CCTGTGCTTTTTGTGAATTAACCC 59.250 41.667 0.00 0.00 0.00 4.11
2781 6026 4.363999 TGTGCTTTTTGTGAATTAACCCG 58.636 39.130 0.00 0.00 0.00 5.28
2782 6027 3.183574 GTGCTTTTTGTGAATTAACCCGC 59.816 43.478 0.00 0.00 0.00 6.13
2783 6028 2.734606 GCTTTTTGTGAATTAACCCGCC 59.265 45.455 0.00 0.00 0.00 6.13
2784 6029 2.708386 TTTTGTGAATTAACCCGCCG 57.292 45.000 0.00 0.00 0.00 6.46
2785 6030 1.606903 TTTGTGAATTAACCCGCCGT 58.393 45.000 0.00 0.00 0.00 5.68
2786 6031 1.158434 TTGTGAATTAACCCGCCGTC 58.842 50.000 0.00 0.00 0.00 4.79
2787 6032 0.674269 TGTGAATTAACCCGCCGTCC 60.674 55.000 0.00 0.00 0.00 4.79
2788 6033 0.674269 GTGAATTAACCCGCCGTCCA 60.674 55.000 0.00 0.00 0.00 4.02
2789 6034 0.674269 TGAATTAACCCGCCGTCCAC 60.674 55.000 0.00 0.00 0.00 4.02
2790 6035 1.698714 GAATTAACCCGCCGTCCACG 61.699 60.000 0.00 0.00 39.44 4.94
2795 6040 4.745751 CCCGCCGTCCACGCTTTA 62.746 66.667 0.00 0.00 38.18 1.85
2796 6041 2.739287 CCGCCGTCCACGCTTTAA 60.739 61.111 0.00 0.00 38.18 1.52
2797 6042 2.104253 CCGCCGTCCACGCTTTAAT 61.104 57.895 0.00 0.00 38.18 1.40
2798 6043 1.060308 CGCCGTCCACGCTTTAATG 59.940 57.895 0.00 0.00 38.18 1.90
2799 6044 1.355796 CGCCGTCCACGCTTTAATGA 61.356 55.000 0.00 0.00 38.18 2.57
2800 6045 0.373716 GCCGTCCACGCTTTAATGAG 59.626 55.000 0.00 0.00 38.18 2.90
2801 6046 2.004583 CCGTCCACGCTTTAATGAGA 57.995 50.000 0.00 0.00 38.18 3.27
2802 6047 2.343101 CCGTCCACGCTTTAATGAGAA 58.657 47.619 0.00 0.00 38.18 2.87
2803 6048 2.739913 CCGTCCACGCTTTAATGAGAAA 59.260 45.455 0.00 0.00 38.18 2.52
2804 6049 3.374058 CCGTCCACGCTTTAATGAGAAAT 59.626 43.478 0.00 0.00 38.18 2.17
2805 6050 4.494199 CCGTCCACGCTTTAATGAGAAATC 60.494 45.833 0.00 0.00 38.18 2.17
2806 6051 4.330074 CGTCCACGCTTTAATGAGAAATCT 59.670 41.667 0.00 0.00 0.00 2.40
2807 6052 5.563842 GTCCACGCTTTAATGAGAAATCTG 58.436 41.667 0.00 0.00 0.00 2.90
2808 6053 5.122396 GTCCACGCTTTAATGAGAAATCTGT 59.878 40.000 0.00 0.00 0.00 3.41
2809 6054 5.122239 TCCACGCTTTAATGAGAAATCTGTG 59.878 40.000 0.00 0.00 0.00 3.66
2810 6055 5.122239 CCACGCTTTAATGAGAAATCTGTGA 59.878 40.000 0.00 0.00 0.00 3.58
2811 6056 6.183360 CCACGCTTTAATGAGAAATCTGTGAT 60.183 38.462 0.00 0.00 0.00 3.06
2812 6057 7.246311 CACGCTTTAATGAGAAATCTGTGATT 58.754 34.615 0.00 0.00 0.00 2.57
2813 6058 7.217636 CACGCTTTAATGAGAAATCTGTGATTG 59.782 37.037 0.00 0.00 0.00 2.67
2814 6059 6.690098 CGCTTTAATGAGAAATCTGTGATTGG 59.310 38.462 0.00 0.00 0.00 3.16
2815 6060 6.976925 GCTTTAATGAGAAATCTGTGATTGGG 59.023 38.462 0.00 0.00 0.00 4.12
2816 6061 4.996788 AATGAGAAATCTGTGATTGGGC 57.003 40.909 0.00 0.00 0.00 5.36
2817 6062 2.726821 TGAGAAATCTGTGATTGGGCC 58.273 47.619 0.00 0.00 0.00 5.80
2818 6063 1.672881 GAGAAATCTGTGATTGGGCCG 59.327 52.381 0.00 0.00 0.00 6.13
2819 6064 1.004745 AGAAATCTGTGATTGGGCCGT 59.995 47.619 0.00 0.00 0.00 5.68
2820 6065 1.401905 GAAATCTGTGATTGGGCCGTC 59.598 52.381 0.00 0.00 0.00 4.79
2821 6066 0.744414 AATCTGTGATTGGGCCGTCG 60.744 55.000 0.00 0.00 0.00 5.12
2822 6067 1.613317 ATCTGTGATTGGGCCGTCGA 61.613 55.000 0.00 0.00 0.00 4.20
2823 6068 1.153369 CTGTGATTGGGCCGTCGAT 60.153 57.895 0.00 0.00 0.00 3.59
2824 6069 1.153449 TGTGATTGGGCCGTCGATC 60.153 57.895 0.00 0.00 0.00 3.69
2825 6070 1.887707 GTGATTGGGCCGTCGATCC 60.888 63.158 0.00 0.00 0.00 3.36
2826 6071 2.280865 GATTGGGCCGTCGATCCC 60.281 66.667 13.59 13.59 42.93 3.85
2827 6072 4.235762 ATTGGGCCGTCGATCCCG 62.236 66.667 14.94 1.92 45.60 5.14
2846 6091 3.311110 ACGCACACGGGACAGGAT 61.311 61.111 0.00 0.00 46.04 3.24
2847 6092 2.509336 CGCACACGGGACAGGATC 60.509 66.667 0.00 0.00 34.97 3.36
2848 6093 2.982130 GCACACGGGACAGGATCT 59.018 61.111 0.00 0.00 0.00 2.75
2849 6094 1.153549 GCACACGGGACAGGATCTC 60.154 63.158 0.00 0.00 0.00 2.75
2850 6095 1.888436 GCACACGGGACAGGATCTCA 61.888 60.000 0.00 0.00 0.00 3.27
2851 6096 0.608130 CACACGGGACAGGATCTCAA 59.392 55.000 0.00 0.00 0.00 3.02
2852 6097 0.608640 ACACGGGACAGGATCTCAAC 59.391 55.000 0.00 0.00 0.00 3.18
2853 6098 0.458543 CACGGGACAGGATCTCAACG 60.459 60.000 0.00 0.00 0.00 4.10
2854 6099 0.611062 ACGGGACAGGATCTCAACGA 60.611 55.000 0.00 0.00 0.00 3.85
2855 6100 0.101399 CGGGACAGGATCTCAACGAG 59.899 60.000 0.00 0.00 0.00 4.18
2856 6101 0.179097 GGGACAGGATCTCAACGAGC 60.179 60.000 0.00 0.00 0.00 5.03
2857 6102 0.526524 GGACAGGATCTCAACGAGCG 60.527 60.000 0.00 0.00 0.00 5.03
2858 6103 0.526524 GACAGGATCTCAACGAGCGG 60.527 60.000 0.00 0.00 0.00 5.52
2859 6104 0.965866 ACAGGATCTCAACGAGCGGA 60.966 55.000 0.00 0.00 0.00 5.54
2860 6105 0.526524 CAGGATCTCAACGAGCGGAC 60.527 60.000 0.00 0.00 0.00 4.79
2861 6106 1.586564 GGATCTCAACGAGCGGACG 60.587 63.158 0.00 0.00 39.31 4.79
2863 6108 1.134530 GATCTCAACGAGCGGACGTG 61.135 60.000 0.00 3.44 45.83 4.49
2864 6109 3.470567 CTCAACGAGCGGACGTGC 61.471 66.667 0.00 0.00 45.83 5.34
2871 6116 3.805307 AGCGGACGTGCTCTCTCG 61.805 66.667 5.27 0.00 42.95 4.04
2872 6117 3.800863 GCGGACGTGCTCTCTCGA 61.801 66.667 5.27 0.00 33.82 4.04
2873 6118 2.098680 CGGACGTGCTCTCTCGAC 59.901 66.667 5.27 0.00 33.82 4.20
2874 6119 2.677979 CGGACGTGCTCTCTCGACA 61.678 63.158 5.27 0.00 33.82 4.35
2875 6120 1.135731 GGACGTGCTCTCTCGACAG 59.864 63.158 0.00 0.00 33.82 3.51
2876 6121 1.513160 GACGTGCTCTCTCGACAGC 60.513 63.158 0.00 0.20 36.08 4.40
2877 6122 2.575525 CGTGCTCTCTCGACAGCG 60.576 66.667 2.67 0.00 38.59 5.18
2878 6123 2.563942 GTGCTCTCTCGACAGCGT 59.436 61.111 2.67 0.00 38.59 5.07
2879 6124 1.513160 GTGCTCTCTCGACAGCGTC 60.513 63.158 2.67 0.00 38.59 5.19
2893 6138 0.039074 AGCGTCGTTTCCTGACAGAG 60.039 55.000 3.32 0.00 36.11 3.35
2894 6139 1.009389 GCGTCGTTTCCTGACAGAGG 61.009 60.000 3.32 0.00 44.45 3.69
2905 6150 1.824230 CTGACAGAGGAACAGGAGGAG 59.176 57.143 0.00 0.00 0.00 3.69
2907 6152 0.787084 ACAGAGGAACAGGAGGAGGA 59.213 55.000 0.00 0.00 0.00 3.71
2908 6153 1.272985 ACAGAGGAACAGGAGGAGGAG 60.273 57.143 0.00 0.00 0.00 3.69
2911 6156 2.726351 GGAACAGGAGGAGGAGGCG 61.726 68.421 0.00 0.00 0.00 5.52
2912 6157 2.685380 AACAGGAGGAGGAGGCGG 60.685 66.667 0.00 0.00 0.00 6.13
2913 6158 4.787280 ACAGGAGGAGGAGGCGGG 62.787 72.222 0.00 0.00 0.00 6.13
2937 6937 4.144727 GAGGGAGGGAGCTCGGGA 62.145 72.222 7.83 0.00 0.00 5.14
2940 6940 4.144727 GGAGGGAGCTCGGGAGGA 62.145 72.222 7.83 0.00 0.00 3.71
2945 6945 2.598467 GAGCTCGGGAGGAGAGGA 59.402 66.667 0.00 0.00 46.23 3.71
2952 6952 0.537653 CGGGAGGAGAGGAAAGGAAC 59.462 60.000 0.00 0.00 0.00 3.62
2954 6954 1.557371 GGGAGGAGAGGAAAGGAACAG 59.443 57.143 0.00 0.00 0.00 3.16
2957 6957 1.152271 AGGAGAGGAAAGGAACAGGGA 59.848 52.381 0.00 0.00 0.00 4.20
2959 6959 0.988063 AGAGGAAAGGAACAGGGAGC 59.012 55.000 0.00 0.00 0.00 4.70
2961 6961 1.377333 GGAAAGGAACAGGGAGCGG 60.377 63.158 0.00 0.00 0.00 5.52
2962 6962 2.034221 AAAGGAACAGGGAGCGGC 59.966 61.111 0.00 0.00 0.00 6.53
2963 6963 3.901797 AAAGGAACAGGGAGCGGCG 62.902 63.158 0.51 0.51 0.00 6.46
3020 7054 1.229853 GGGGGAGGAGACCAAAGGA 60.230 63.158 0.00 0.00 0.00 3.36
3021 7055 0.845102 GGGGGAGGAGACCAAAGGAA 60.845 60.000 0.00 0.00 0.00 3.36
3022 7056 0.621082 GGGGAGGAGACCAAAGGAAG 59.379 60.000 0.00 0.00 0.00 3.46
3024 7058 0.034960 GGAGGAGACCAAAGGAAGGC 60.035 60.000 0.00 0.00 0.00 4.35
3025 7059 0.693049 GAGGAGACCAAAGGAAGGCA 59.307 55.000 0.00 0.00 0.00 4.75
3026 7060 0.402121 AGGAGACCAAAGGAAGGCAC 59.598 55.000 0.00 0.00 0.00 5.01
3027 7061 0.110486 GGAGACCAAAGGAAGGCACA 59.890 55.000 0.00 0.00 0.00 4.57
3028 7062 1.528129 GAGACCAAAGGAAGGCACAG 58.472 55.000 0.00 0.00 0.00 3.66
3031 7065 0.468029 ACCAAAGGAAGGCACAGTGG 60.468 55.000 1.84 0.00 0.00 4.00
3032 7066 1.181098 CCAAAGGAAGGCACAGTGGG 61.181 60.000 1.84 0.00 0.00 4.61
3041 7075 4.666253 CACAGTGGGTGGGGCTGG 62.666 72.222 0.00 0.00 44.04 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.321648 TCCGCACCATGCTGGAGT 61.322 61.111 8.91 0.00 40.96 3.85
328 329 1.454653 GCGTTTGACTACTTCGTGGTC 59.545 52.381 3.88 3.88 42.91 4.02
372 373 1.167155 GGGCAGCAGCATGATCAGAG 61.167 60.000 2.65 0.00 44.61 3.35
477 478 2.069273 CATCCTCTTGACGTTGACCAC 58.931 52.381 0.00 0.00 0.00 4.16
513 514 4.742201 TGACCCGCTGCTTCGCTC 62.742 66.667 0.00 0.00 0.00 5.03
517 518 1.197036 GTAAACTTGACCCGCTGCTTC 59.803 52.381 0.00 0.00 0.00 3.86
518 519 1.235724 GTAAACTTGACCCGCTGCTT 58.764 50.000 0.00 0.00 0.00 3.91
519 520 0.949105 CGTAAACTTGACCCGCTGCT 60.949 55.000 0.00 0.00 0.00 4.24
521 522 1.495951 GCGTAAACTTGACCCGCTG 59.504 57.895 0.00 0.00 41.06 5.18
522 523 3.961729 GCGTAAACTTGACCCGCT 58.038 55.556 0.00 0.00 41.06 5.52
523 524 0.997196 CTAGCGTAAACTTGACCCGC 59.003 55.000 0.00 0.00 44.35 6.13
524 525 1.636988 CCTAGCGTAAACTTGACCCG 58.363 55.000 0.00 0.00 0.00 5.28
526 527 2.088950 TGCCTAGCGTAAACTTGACC 57.911 50.000 0.00 0.00 0.00 4.02
527 528 3.323243 TCTTGCCTAGCGTAAACTTGAC 58.677 45.455 0.00 0.00 0.00 3.18
528 529 3.671008 TCTTGCCTAGCGTAAACTTGA 57.329 42.857 0.00 0.00 0.00 3.02
529 530 5.581085 ACTTATCTTGCCTAGCGTAAACTTG 59.419 40.000 0.00 0.00 0.00 3.16
530 531 5.731591 ACTTATCTTGCCTAGCGTAAACTT 58.268 37.500 0.00 0.00 0.00 2.66
538 539 3.753797 GCCCATTACTTATCTTGCCTAGC 59.246 47.826 0.00 0.00 0.00 3.42
539 540 5.234466 AGCCCATTACTTATCTTGCCTAG 57.766 43.478 0.00 0.00 0.00 3.02
601 606 1.745232 TTGCTCAGTTGTTGTTCGGT 58.255 45.000 0.00 0.00 0.00 4.69
603 608 2.159448 TGGTTTGCTCAGTTGTTGTTCG 60.159 45.455 0.00 0.00 0.00 3.95
611 616 4.099419 CCTAAAAAGGTGGTTTGCTCAGTT 59.901 41.667 0.00 0.00 0.00 3.16
615 620 3.227614 TCCCTAAAAAGGTGGTTTGCTC 58.772 45.455 0.00 0.00 0.00 4.26
625 630 2.299013 GGTGGTTTGCTCCCTAAAAAGG 59.701 50.000 0.00 0.00 0.00 3.11
635 640 6.349300 TCTCTATGATAAAGGTGGTTTGCTC 58.651 40.000 0.00 0.00 0.00 4.26
691 698 3.131046 TGCAGATCTGAGCTATCGTTCAA 59.869 43.478 27.04 0.00 29.66 2.69
725 732 7.706179 ACGGAGGAAATAATAAACGAACGATAA 59.294 33.333 0.14 0.00 0.00 1.75
729 736 5.707411 ACGGAGGAAATAATAAACGAACG 57.293 39.130 0.00 0.00 0.00 3.95
730 737 6.314648 AGGAACGGAGGAAATAATAAACGAAC 59.685 38.462 0.00 0.00 0.00 3.95
742 766 6.117975 ACTTGTATTTAGGAACGGAGGAAA 57.882 37.500 0.00 0.00 0.00 3.13
744 768 5.012354 ACAACTTGTATTTAGGAACGGAGGA 59.988 40.000 0.00 0.00 0.00 3.71
745 769 5.243207 ACAACTTGTATTTAGGAACGGAGG 58.757 41.667 0.00 0.00 0.00 4.30
761 785 7.908082 TCGTGTTGAAATCTCTAAAACAACTTG 59.092 33.333 0.00 0.00 38.51 3.16
767 791 8.609478 TTTGTTCGTGTTGAAATCTCTAAAAC 57.391 30.769 0.00 0.00 38.60 2.43
828 1019 9.811995 ATGAACTACTACATACGAAGCAAAATA 57.188 29.630 0.00 0.00 0.00 1.40
871 1076 3.619038 GCTGCATAGTACTCACTTGGTTC 59.381 47.826 0.00 0.00 36.14 3.62
875 1080 2.932614 GGTGCTGCATAGTACTCACTTG 59.067 50.000 5.27 0.00 39.23 3.16
878 1083 2.969628 AGGTGCTGCATAGTACTCAC 57.030 50.000 5.27 0.00 39.23 3.51
879 1084 4.038042 GTGATAGGTGCTGCATAGTACTCA 59.962 45.833 5.27 2.25 39.23 3.41
904 1109 2.114638 GGCAGTTTGGCACACTGAA 58.885 52.632 31.93 0.83 43.90 3.02
917 1122 1.960689 GTATGGTTGGTTGTTGGCAGT 59.039 47.619 0.00 0.00 0.00 4.40
930 1135 1.475682 GGTCGTTCCTCTCGTATGGTT 59.524 52.381 0.00 0.00 0.00 3.67
959 1164 0.243907 TAGCTCACCTCGCTTCACAC 59.756 55.000 0.00 0.00 38.86 3.82
961 1166 0.179124 CCTAGCTCACCTCGCTTCAC 60.179 60.000 0.00 0.00 38.86 3.18
989 1199 4.457496 CCGACATCGCTGGGCAGT 62.457 66.667 0.00 0.00 38.18 4.40
1011 1221 2.184322 GCCGTCTTCCGCATCTCA 59.816 61.111 0.00 0.00 34.38 3.27
1072 1282 1.153667 CCTTCTCCAGCAGCGTCTC 60.154 63.158 0.00 0.00 0.00 3.36
1178 1680 4.631131 TGCATCGAACTCTGAAGAGAAAA 58.369 39.130 14.20 0.00 44.74 2.29
1211 1721 3.663464 TCGTGACGGATAGACTAAACG 57.337 47.619 4.70 7.41 0.00 3.60
1225 1766 3.326747 ACTCTACCAAGCAAATCGTGAC 58.673 45.455 0.00 0.00 0.00 3.67
1229 1770 2.932614 CCTGACTCTACCAAGCAAATCG 59.067 50.000 0.00 0.00 0.00 3.34
1375 2662 1.123077 CACGGATGATCTCCAAGGGA 58.877 55.000 10.58 0.00 45.24 4.20
1400 2687 0.973632 TAGCTGCCTTCTTCGTCCAA 59.026 50.000 0.00 0.00 0.00 3.53
1419 2706 1.079127 CCGGAAACTGCCTCGTCAT 60.079 57.895 0.00 0.00 0.00 3.06
1470 2757 2.125912 CTGCTGACCCGAAGTCCG 60.126 66.667 3.51 0.00 45.68 4.79
1516 2803 2.965716 AAGCTTGCTCTTGCGGTGGT 62.966 55.000 0.00 0.00 43.34 4.16
1520 2807 0.524862 AATGAAGCTTGCTCTTGCGG 59.475 50.000 2.10 0.00 43.34 5.69
1524 2811 5.178809 GCAAATGAAAATGAAGCTTGCTCTT 59.821 36.000 2.10 0.00 35.85 2.85
1525 2812 4.689345 GCAAATGAAAATGAAGCTTGCTCT 59.311 37.500 2.10 0.00 35.85 4.09
1537 2824 6.647895 GGAAGAACAGTCATGCAAATGAAAAT 59.352 34.615 0.00 0.00 31.60 1.82
1572 2863 5.243981 CAACAACTCCATCATCTTCAGAGT 58.756 41.667 0.00 0.00 39.42 3.24
1573 2864 4.634883 CCAACAACTCCATCATCTTCAGAG 59.365 45.833 0.00 0.00 0.00 3.35
1579 2870 4.598036 ATTCCCAACAACTCCATCATCT 57.402 40.909 0.00 0.00 0.00 2.90
1614 2905 2.621055 TGGCGCTGACAACTTAAATGTT 59.379 40.909 7.64 0.00 0.00 2.71
1615 2906 2.226330 TGGCGCTGACAACTTAAATGT 58.774 42.857 7.64 0.00 0.00 2.71
1642 2933 5.747951 CTGAGAATAATTTGTCAGGGAGC 57.252 43.478 5.27 0.00 45.12 4.70
1684 3005 1.369091 GAAATGCCGAGTGCCGACAT 61.369 55.000 0.00 0.00 43.17 3.06
1688 3009 2.787249 CTGAAATGCCGAGTGCCG 59.213 61.111 0.00 0.00 40.16 5.69
1692 3013 1.203052 CCAAATGCTGAAATGCCGAGT 59.797 47.619 0.00 0.00 0.00 4.18
1695 3016 0.390078 TGCCAAATGCTGAAATGCCG 60.390 50.000 0.00 0.00 42.00 5.69
1715 3041 3.701664 AGACATGGTTGAGAATTTCCCC 58.298 45.455 0.00 0.00 0.00 4.81
1716 3042 6.039829 GGATTAGACATGGTTGAGAATTTCCC 59.960 42.308 0.00 0.00 0.00 3.97
1717 3043 6.039829 GGGATTAGACATGGTTGAGAATTTCC 59.960 42.308 0.00 0.00 0.00 3.13
1718 3044 6.039829 GGGGATTAGACATGGTTGAGAATTTC 59.960 42.308 0.00 0.00 0.00 2.17
1721 3047 4.728860 AGGGGATTAGACATGGTTGAGAAT 59.271 41.667 0.00 0.00 0.00 2.40
1723 3049 3.711704 GAGGGGATTAGACATGGTTGAGA 59.288 47.826 0.00 0.00 0.00 3.27
1724 3050 3.455910 TGAGGGGATTAGACATGGTTGAG 59.544 47.826 0.00 0.00 0.00 3.02
1725 3051 3.459828 TGAGGGGATTAGACATGGTTGA 58.540 45.455 0.00 0.00 0.00 3.18
1727 3053 3.071602 CGATGAGGGGATTAGACATGGTT 59.928 47.826 0.00 0.00 0.00 3.67
1730 3056 3.325293 CCGATGAGGGGATTAGACATG 57.675 52.381 0.00 0.00 35.97 3.21
1749 3153 3.448660 CCTTCAATCCTGTCAAATTCCCC 59.551 47.826 0.00 0.00 0.00 4.81
1751 3155 5.420104 ACATCCTTCAATCCTGTCAAATTCC 59.580 40.000 0.00 0.00 0.00 3.01
1752 3156 6.521151 ACATCCTTCAATCCTGTCAAATTC 57.479 37.500 0.00 0.00 0.00 2.17
1758 3162 4.093556 GTCGAAACATCCTTCAATCCTGTC 59.906 45.833 0.00 0.00 0.00 3.51
1760 3164 4.256920 AGTCGAAACATCCTTCAATCCTG 58.743 43.478 0.00 0.00 0.00 3.86
1768 3172 2.554032 CCTTGCAAGTCGAAACATCCTT 59.446 45.455 24.35 0.00 0.00 3.36
1771 3175 2.151202 TCCCTTGCAAGTCGAAACATC 58.849 47.619 24.35 0.00 0.00 3.06
1774 3178 3.643159 AAATCCCTTGCAAGTCGAAAC 57.357 42.857 24.35 0.00 0.00 2.78
1778 3182 4.292977 GGATTAAATCCCTTGCAAGTCG 57.707 45.455 24.35 14.17 43.88 4.18
1809 3213 3.380471 TCGATTTGGTGGGGATTGAAT 57.620 42.857 0.00 0.00 0.00 2.57
1819 3223 0.109781 CGGGCTTGTTCGATTTGGTG 60.110 55.000 0.00 0.00 0.00 4.17
1836 3240 3.534554 AGTAATTAAGTTAACCCCGCGG 58.465 45.455 21.04 21.04 0.00 6.46
1841 3245 6.595326 ACCAAGCGTAGTAATTAAGTTAACCC 59.405 38.462 0.88 0.00 0.00 4.11
1842 3246 7.118245 ACACCAAGCGTAGTAATTAAGTTAACC 59.882 37.037 0.88 0.00 0.00 2.85
1843 3247 8.021955 ACACCAAGCGTAGTAATTAAGTTAAC 57.978 34.615 0.00 0.00 0.00 2.01
1856 3265 0.238289 CAGCCAAACACCAAGCGTAG 59.762 55.000 0.00 0.00 0.00 3.51
1859 3268 2.355009 GCAGCCAAACACCAAGCG 60.355 61.111 0.00 0.00 0.00 4.68
1870 3279 1.627329 GATCATATCCCTCTGCAGCCA 59.373 52.381 9.47 0.00 0.00 4.75
1893 3306 4.699522 GTTCCTTGGACGGCGGCT 62.700 66.667 14.66 0.00 0.00 5.52
1896 3309 2.032071 AAGGTTCCTTGGACGGCG 59.968 61.111 4.80 4.80 0.00 6.46
1911 3324 1.721389 CACGACCTCATCACGTTCAAG 59.279 52.381 0.00 0.00 38.18 3.02
1912 3325 1.778334 CACGACCTCATCACGTTCAA 58.222 50.000 0.00 0.00 38.18 2.69
1914 3327 1.674611 CGCACGACCTCATCACGTTC 61.675 60.000 0.00 0.00 38.18 3.95
1965 3378 2.502080 GCAGAGTCCGACGACGTG 60.502 66.667 4.58 0.00 44.28 4.49
2099 3643 3.152341 CAAAGATTGGTGTTCTCAGCCT 58.848 45.455 0.00 0.00 40.84 4.58
2100 3644 2.887152 ACAAAGATTGGTGTTCTCAGCC 59.113 45.455 0.00 0.00 40.84 4.85
2109 3653 6.968904 GCATATACTGAACACAAAGATTGGTG 59.031 38.462 0.00 0.00 40.78 4.17
2110 3654 6.183360 CGCATATACTGAACACAAAGATTGGT 60.183 38.462 0.00 0.00 34.12 3.67
2111 3655 6.183360 ACGCATATACTGAACACAAAGATTGG 60.183 38.462 0.00 0.00 34.12 3.16
2112 3656 6.684131 CACGCATATACTGAACACAAAGATTG 59.316 38.462 0.00 0.00 0.00 2.67
2113 3657 6.371548 ACACGCATATACTGAACACAAAGATT 59.628 34.615 0.00 0.00 0.00 2.40
2118 3781 4.752604 ACAACACGCATATACTGAACACAA 59.247 37.500 0.00 0.00 0.00 3.33
2120 3783 4.387559 TGACAACACGCATATACTGAACAC 59.612 41.667 0.00 0.00 0.00 3.32
2134 3797 1.075542 ACCATGCGTATGACAACACG 58.924 50.000 15.64 8.22 41.04 4.49
2154 3867 0.944311 CGTAGGACAGGCACACACAC 60.944 60.000 0.00 0.00 0.00 3.82
2155 3868 1.365999 CGTAGGACAGGCACACACA 59.634 57.895 0.00 0.00 0.00 3.72
2156 3869 2.027625 GCGTAGGACAGGCACACAC 61.028 63.158 0.00 0.00 37.96 3.82
2160 3873 0.676782 AATTGGCGTAGGACAGGCAC 60.677 55.000 0.00 0.00 42.67 5.01
2177 3890 1.741770 GTGCCTCGTCGCCTGAAAT 60.742 57.895 0.00 0.00 0.00 2.17
2212 3925 3.127533 GTGGTCGACTGCATGCCC 61.128 66.667 16.68 8.41 0.00 5.36
2266 3979 1.012086 CGATGAACACCTCAGCATGG 58.988 55.000 0.00 0.00 40.69 3.66
2317 4030 0.466007 TGGTGTTGTGACTGCAGCAT 60.466 50.000 15.27 0.00 35.99 3.79
2350 4063 2.755876 TCCGCCATGAGACGAGCT 60.756 61.111 0.00 0.00 0.00 4.09
2397 4110 2.610727 GCCAGAGGATTAGCATACCGTC 60.611 54.545 0.00 0.00 0.00 4.79
2438 4151 3.843999 ACAAAGAAAAACATGCACGTGT 58.156 36.364 18.38 0.00 0.00 4.49
2454 4169 6.264518 ACCTGGATGTTGTTAAACCTACAAAG 59.735 38.462 0.00 0.00 37.26 2.77
2507 4224 1.813178 CACACACTCTCGGCTTCTCTA 59.187 52.381 0.00 0.00 0.00 2.43
2547 4264 0.631753 TGAACACAAACCCTTCCCCA 59.368 50.000 0.00 0.00 0.00 4.96
2577 4322 1.550524 TCGTCAAAGATCTCACCCAGG 59.449 52.381 0.00 0.00 0.00 4.45
2580 4325 1.550976 AGGTCGTCAAAGATCTCACCC 59.449 52.381 0.00 0.00 0.00 4.61
2610 4355 0.923358 AAATCCCCGTTATCCTGCCA 59.077 50.000 0.00 0.00 0.00 4.92
2618 4363 9.456147 CATATCAATATGGTAAAATCCCCGTTA 57.544 33.333 2.60 0.00 37.16 3.18
2619 4364 7.947890 ACATATCAATATGGTAAAATCCCCGTT 59.052 33.333 13.18 0.00 43.38 4.44
2667 4420 6.769822 GGGAGAGATTATTTTGCTCTGATCAA 59.230 38.462 0.00 0.00 39.00 2.57
2686 4439 8.311836 TCCGTGCTTTATTATTATTAGGGAGAG 58.688 37.037 0.00 0.00 0.00 3.20
2696 5941 6.296026 AGCCTCAATCCGTGCTTTATTATTA 58.704 36.000 0.00 0.00 0.00 0.98
2699 5944 4.127171 GAGCCTCAATCCGTGCTTTATTA 58.873 43.478 0.00 0.00 33.41 0.98
2709 5954 0.462759 GAACCCAGAGCCTCAATCCG 60.463 60.000 0.00 0.00 0.00 4.18
2710 5955 0.620556 TGAACCCAGAGCCTCAATCC 59.379 55.000 0.00 0.00 0.00 3.01
2711 5956 1.680249 GGTGAACCCAGAGCCTCAATC 60.680 57.143 0.00 0.00 0.00 2.67
2712 5957 0.329596 GGTGAACCCAGAGCCTCAAT 59.670 55.000 0.00 0.00 0.00 2.57
2713 5958 1.761174 GGTGAACCCAGAGCCTCAA 59.239 57.895 0.00 0.00 0.00 3.02
2714 5959 2.583441 CGGTGAACCCAGAGCCTCA 61.583 63.158 0.00 0.00 0.00 3.86
2715 5960 2.266055 CGGTGAACCCAGAGCCTC 59.734 66.667 0.00 0.00 0.00 4.70
2716 5961 2.526873 ACGGTGAACCCAGAGCCT 60.527 61.111 0.00 0.00 0.00 4.58
2717 5962 2.047179 GACGGTGAACCCAGAGCC 60.047 66.667 0.00 0.00 0.00 4.70
2718 5963 2.432628 CGACGGTGAACCCAGAGC 60.433 66.667 0.00 0.00 0.00 4.09
2719 5964 3.048602 ACGACGGTGAACCCAGAG 58.951 61.111 0.00 0.00 0.00 3.35
2729 5974 0.809241 TGTAAAAACGCCACGACGGT 60.809 50.000 0.00 0.00 37.37 4.83
2730 5975 0.513820 ATGTAAAAACGCCACGACGG 59.486 50.000 0.00 0.00 37.37 4.79
2731 5976 3.436817 TTATGTAAAAACGCCACGACG 57.563 42.857 0.00 0.00 39.50 5.12
2732 5977 4.153256 CCTTTATGTAAAAACGCCACGAC 58.847 43.478 0.00 0.00 0.00 4.34
2733 5978 3.814283 ACCTTTATGTAAAAACGCCACGA 59.186 39.130 0.00 0.00 0.00 4.35
2734 5979 4.149910 ACCTTTATGTAAAAACGCCACG 57.850 40.909 0.00 0.00 0.00 4.94
2735 5980 4.478699 GGACCTTTATGTAAAAACGCCAC 58.521 43.478 0.00 0.00 0.00 5.01
2736 5981 3.506844 GGGACCTTTATGTAAAAACGCCA 59.493 43.478 0.00 0.00 0.00 5.69
2737 5982 3.760151 AGGGACCTTTATGTAAAAACGCC 59.240 43.478 0.00 0.00 0.00 5.68
2738 5983 4.216902 ACAGGGACCTTTATGTAAAAACGC 59.783 41.667 0.00 0.00 0.00 4.84
2739 5984 5.695818 CACAGGGACCTTTATGTAAAAACG 58.304 41.667 0.00 0.00 0.00 3.60
2740 5985 5.243060 AGCACAGGGACCTTTATGTAAAAAC 59.757 40.000 0.00 0.00 0.00 2.43
2741 5986 5.390387 AGCACAGGGACCTTTATGTAAAAA 58.610 37.500 0.00 0.00 0.00 1.94
2742 5987 4.993028 AGCACAGGGACCTTTATGTAAAA 58.007 39.130 0.00 0.00 0.00 1.52
2743 5988 4.650972 AGCACAGGGACCTTTATGTAAA 57.349 40.909 0.00 0.00 0.00 2.01
2744 5989 4.650972 AAGCACAGGGACCTTTATGTAA 57.349 40.909 0.00 0.00 0.00 2.41
2745 5990 4.650972 AAAGCACAGGGACCTTTATGTA 57.349 40.909 0.00 0.00 0.00 2.29
2746 5991 3.525800 AAAGCACAGGGACCTTTATGT 57.474 42.857 0.00 0.00 0.00 2.29
2747 5992 4.039124 ACAAAAAGCACAGGGACCTTTATG 59.961 41.667 0.00 0.00 0.00 1.90
2748 5993 4.039124 CACAAAAAGCACAGGGACCTTTAT 59.961 41.667 0.00 0.00 0.00 1.40
2749 5994 3.383185 CACAAAAAGCACAGGGACCTTTA 59.617 43.478 0.00 0.00 0.00 1.85
2750 5995 2.168313 CACAAAAAGCACAGGGACCTTT 59.832 45.455 0.00 0.00 0.00 3.11
2751 5996 1.756538 CACAAAAAGCACAGGGACCTT 59.243 47.619 0.00 0.00 0.00 3.50
2752 5997 1.064017 TCACAAAAAGCACAGGGACCT 60.064 47.619 0.00 0.00 0.00 3.85
2753 5998 1.398692 TCACAAAAAGCACAGGGACC 58.601 50.000 0.00 0.00 0.00 4.46
2754 5999 3.733443 ATTCACAAAAAGCACAGGGAC 57.267 42.857 0.00 0.00 0.00 4.46
2755 6000 5.452636 GGTTAATTCACAAAAAGCACAGGGA 60.453 40.000 0.00 0.00 0.00 4.20
2756 6001 4.749598 GGTTAATTCACAAAAAGCACAGGG 59.250 41.667 0.00 0.00 0.00 4.45
2757 6002 4.749598 GGGTTAATTCACAAAAAGCACAGG 59.250 41.667 0.00 0.00 0.00 4.00
2758 6003 4.444056 CGGGTTAATTCACAAAAAGCACAG 59.556 41.667 0.00 0.00 0.00 3.66
2759 6004 4.363999 CGGGTTAATTCACAAAAAGCACA 58.636 39.130 0.00 0.00 0.00 4.57
2760 6005 3.183574 GCGGGTTAATTCACAAAAAGCAC 59.816 43.478 0.00 0.00 0.00 4.40
2761 6006 3.385577 GCGGGTTAATTCACAAAAAGCA 58.614 40.909 0.00 0.00 0.00 3.91
2762 6007 2.734606 GGCGGGTTAATTCACAAAAAGC 59.265 45.455 0.00 0.00 0.00 3.51
2763 6008 2.983803 CGGCGGGTTAATTCACAAAAAG 59.016 45.455 0.00 0.00 0.00 2.27
2764 6009 2.361438 ACGGCGGGTTAATTCACAAAAA 59.639 40.909 13.24 0.00 0.00 1.94
2765 6010 1.955080 ACGGCGGGTTAATTCACAAAA 59.045 42.857 13.24 0.00 0.00 2.44
2766 6011 1.536331 GACGGCGGGTTAATTCACAAA 59.464 47.619 13.24 0.00 0.00 2.83
2767 6012 1.158434 GACGGCGGGTTAATTCACAA 58.842 50.000 13.24 0.00 0.00 3.33
2768 6013 0.674269 GGACGGCGGGTTAATTCACA 60.674 55.000 13.24 0.00 0.00 3.58
2769 6014 0.674269 TGGACGGCGGGTTAATTCAC 60.674 55.000 13.24 0.00 0.00 3.18
2770 6015 0.674269 GTGGACGGCGGGTTAATTCA 60.674 55.000 13.24 0.00 0.00 2.57
2771 6016 1.698714 CGTGGACGGCGGGTTAATTC 61.699 60.000 13.24 0.00 35.37 2.17
2772 6017 1.742510 CGTGGACGGCGGGTTAATT 60.743 57.895 13.24 0.00 35.37 1.40
2773 6018 2.125431 CGTGGACGGCGGGTTAAT 60.125 61.111 13.24 0.00 35.37 1.40
2778 6023 4.745751 TAAAGCGTGGACGGCGGG 62.746 66.667 13.24 0.00 40.23 6.13
2779 6024 2.104253 ATTAAAGCGTGGACGGCGG 61.104 57.895 13.24 0.00 40.23 6.13
2780 6025 1.060308 CATTAAAGCGTGGACGGCG 59.940 57.895 4.80 4.80 40.23 6.46
2781 6026 0.373716 CTCATTAAAGCGTGGACGGC 59.626 55.000 0.71 0.00 40.23 5.68
2782 6027 2.004583 TCTCATTAAAGCGTGGACGG 57.995 50.000 0.71 0.00 40.23 4.79
2783 6028 4.330074 AGATTTCTCATTAAAGCGTGGACG 59.670 41.667 0.00 0.00 43.27 4.79
2784 6029 5.122396 ACAGATTTCTCATTAAAGCGTGGAC 59.878 40.000 0.00 0.00 30.21 4.02
2785 6030 5.122239 CACAGATTTCTCATTAAAGCGTGGA 59.878 40.000 0.00 0.00 31.74 4.02
2786 6031 5.122239 TCACAGATTTCTCATTAAAGCGTGG 59.878 40.000 0.00 0.00 33.87 4.94
2787 6032 6.169419 TCACAGATTTCTCATTAAAGCGTG 57.831 37.500 0.00 0.00 34.11 5.34
2788 6033 6.992063 ATCACAGATTTCTCATTAAAGCGT 57.008 33.333 0.00 0.00 30.21 5.07
2789 6034 6.690098 CCAATCACAGATTTCTCATTAAAGCG 59.310 38.462 0.00 0.00 30.21 4.68
2790 6035 6.976925 CCCAATCACAGATTTCTCATTAAAGC 59.023 38.462 0.00 0.00 0.00 3.51
2791 6036 6.976925 GCCCAATCACAGATTTCTCATTAAAG 59.023 38.462 0.00 0.00 0.00 1.85
2792 6037 6.127366 GGCCCAATCACAGATTTCTCATTAAA 60.127 38.462 0.00 0.00 0.00 1.52
2793 6038 5.360714 GGCCCAATCACAGATTTCTCATTAA 59.639 40.000 0.00 0.00 0.00 1.40
2794 6039 4.889409 GGCCCAATCACAGATTTCTCATTA 59.111 41.667 0.00 0.00 0.00 1.90
2795 6040 3.703052 GGCCCAATCACAGATTTCTCATT 59.297 43.478 0.00 0.00 0.00 2.57
2796 6041 3.294214 GGCCCAATCACAGATTTCTCAT 58.706 45.455 0.00 0.00 0.00 2.90
2797 6042 2.726821 GGCCCAATCACAGATTTCTCA 58.273 47.619 0.00 0.00 0.00 3.27
2798 6043 1.672881 CGGCCCAATCACAGATTTCTC 59.327 52.381 0.00 0.00 0.00 2.87
2799 6044 1.004745 ACGGCCCAATCACAGATTTCT 59.995 47.619 0.00 0.00 0.00 2.52
2800 6045 1.401905 GACGGCCCAATCACAGATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2801 6046 1.463674 GACGGCCCAATCACAGATTT 58.536 50.000 0.00 0.00 0.00 2.17
2802 6047 0.744414 CGACGGCCCAATCACAGATT 60.744 55.000 0.00 0.00 0.00 2.40
2803 6048 1.153369 CGACGGCCCAATCACAGAT 60.153 57.895 0.00 0.00 0.00 2.90
2804 6049 1.613317 ATCGACGGCCCAATCACAGA 61.613 55.000 0.00 0.00 0.00 3.41
2805 6050 1.153369 ATCGACGGCCCAATCACAG 60.153 57.895 0.00 0.00 0.00 3.66
2806 6051 1.153449 GATCGACGGCCCAATCACA 60.153 57.895 0.00 0.00 0.00 3.58
2807 6052 1.887707 GGATCGACGGCCCAATCAC 60.888 63.158 0.00 0.00 0.00 3.06
2808 6053 2.504032 GGATCGACGGCCCAATCA 59.496 61.111 0.00 0.00 0.00 2.57
2809 6054 2.280865 GGGATCGACGGCCCAATC 60.281 66.667 18.16 3.83 44.07 2.67
2810 6055 4.235762 CGGGATCGACGGCCCAAT 62.236 66.667 21.35 0.00 44.94 3.16
2828 6073 3.589654 ATCCTGTCCCGTGTGCGTG 62.590 63.158 0.00 0.00 36.15 5.34
2829 6074 3.296709 GATCCTGTCCCGTGTGCGT 62.297 63.158 0.00 0.00 36.15 5.24
2830 6075 2.509336 GATCCTGTCCCGTGTGCG 60.509 66.667 0.00 0.00 37.95 5.34
2831 6076 1.153549 GAGATCCTGTCCCGTGTGC 60.154 63.158 0.00 0.00 0.00 4.57
2832 6077 0.608130 TTGAGATCCTGTCCCGTGTG 59.392 55.000 0.00 0.00 0.00 3.82
2833 6078 0.608640 GTTGAGATCCTGTCCCGTGT 59.391 55.000 0.00 0.00 0.00 4.49
2834 6079 0.458543 CGTTGAGATCCTGTCCCGTG 60.459 60.000 0.00 0.00 0.00 4.94
2835 6080 0.611062 TCGTTGAGATCCTGTCCCGT 60.611 55.000 0.00 0.00 0.00 5.28
2836 6081 0.101399 CTCGTTGAGATCCTGTCCCG 59.899 60.000 0.00 0.00 0.00 5.14
2837 6082 0.179097 GCTCGTTGAGATCCTGTCCC 60.179 60.000 0.00 0.00 0.00 4.46
2838 6083 0.526524 CGCTCGTTGAGATCCTGTCC 60.527 60.000 0.00 0.00 0.00 4.02
2839 6084 0.526524 CCGCTCGTTGAGATCCTGTC 60.527 60.000 0.00 0.00 0.00 3.51
2840 6085 0.965866 TCCGCTCGTTGAGATCCTGT 60.966 55.000 0.00 0.00 0.00 4.00
2841 6086 0.526524 GTCCGCTCGTTGAGATCCTG 60.527 60.000 0.00 0.00 0.00 3.86
2842 6087 1.810532 GTCCGCTCGTTGAGATCCT 59.189 57.895 0.00 0.00 0.00 3.24
2843 6088 1.586564 CGTCCGCTCGTTGAGATCC 60.587 63.158 0.00 0.00 0.00 3.36
2844 6089 1.134530 CACGTCCGCTCGTTGAGATC 61.135 60.000 0.00 0.00 42.27 2.75
2845 6090 1.154016 CACGTCCGCTCGTTGAGAT 60.154 57.895 0.00 0.00 42.27 2.75
2846 6091 2.254350 CACGTCCGCTCGTTGAGA 59.746 61.111 0.00 0.00 42.27 3.27
2847 6092 3.470567 GCACGTCCGCTCGTTGAG 61.471 66.667 0.69 0.00 42.27 3.02
2848 6093 3.973516 AGCACGTCCGCTCGTTGA 61.974 61.111 0.00 0.00 42.27 3.18
2855 6100 3.800863 TCGAGAGAGCACGTCCGC 61.801 66.667 0.00 0.00 34.84 5.54
2856 6101 2.098680 GTCGAGAGAGCACGTCCG 59.901 66.667 0.00 0.00 43.49 4.79
2857 6102 1.135731 CTGTCGAGAGAGCACGTCC 59.864 63.158 2.83 0.00 43.49 4.79
2858 6103 1.513160 GCTGTCGAGAGAGCACGTC 60.513 63.158 14.74 0.00 45.86 4.34
2859 6104 2.563942 GCTGTCGAGAGAGCACGT 59.436 61.111 14.74 0.00 45.86 4.49
2860 6105 2.575525 CGCTGTCGAGAGAGCACG 60.576 66.667 14.74 3.24 46.80 5.34
2861 6106 1.513160 GACGCTGTCGAGAGAGCAC 60.513 63.158 14.74 10.66 46.80 4.40
2862 6107 2.871099 GACGCTGTCGAGAGAGCA 59.129 61.111 14.74 0.00 46.80 4.26
2871 6116 0.596600 TGTCAGGAAACGACGCTGTC 60.597 55.000 0.00 0.00 36.90 3.51
2872 6117 0.597637 CTGTCAGGAAACGACGCTGT 60.598 55.000 0.00 0.00 36.90 4.40
2873 6118 0.318699 TCTGTCAGGAAACGACGCTG 60.319 55.000 0.00 0.00 36.90 5.18
2874 6119 0.039074 CTCTGTCAGGAAACGACGCT 60.039 55.000 0.00 0.00 36.90 5.07
2875 6120 2.435741 CTCTGTCAGGAAACGACGC 58.564 57.895 0.00 0.00 36.90 5.19
2884 6129 0.901124 CCTCCTGTTCCTCTGTCAGG 59.099 60.000 0.00 4.30 46.94 3.86
2885 6130 1.824230 CTCCTCCTGTTCCTCTGTCAG 59.176 57.143 0.00 0.00 0.00 3.51
2886 6131 1.551099 CCTCCTCCTGTTCCTCTGTCA 60.551 57.143 0.00 0.00 0.00 3.58
2887 6132 1.190643 CCTCCTCCTGTTCCTCTGTC 58.809 60.000 0.00 0.00 0.00 3.51
2893 6138 2.726351 CGCCTCCTCCTCCTGTTCC 61.726 68.421 0.00 0.00 0.00 3.62
2894 6139 2.726351 CCGCCTCCTCCTCCTGTTC 61.726 68.421 0.00 0.00 0.00 3.18
2920 6165 4.144727 TCCCGAGCTCCCTCCCTC 62.145 72.222 8.47 0.00 34.49 4.30
2923 6168 4.144727 TCCTCCCGAGCTCCCTCC 62.145 72.222 8.47 0.00 34.49 4.30
2924 6169 2.520741 CTCCTCCCGAGCTCCCTC 60.521 72.222 8.47 0.00 34.66 4.30
2927 6927 2.520741 CCTCTCCTCCCGAGCTCC 60.521 72.222 8.47 0.00 38.62 4.70
2930 6930 1.681486 CCTTTCCTCTCCTCCCGAGC 61.681 65.000 0.00 0.00 38.62 5.03
2931 6931 0.033011 TCCTTTCCTCTCCTCCCGAG 60.033 60.000 0.00 0.00 40.30 4.63
2936 6936 1.557371 CCCTGTTCCTTTCCTCTCCTC 59.443 57.143 0.00 0.00 0.00 3.71
2937 6937 1.152271 TCCCTGTTCCTTTCCTCTCCT 59.848 52.381 0.00 0.00 0.00 3.69
2940 6940 0.988063 GCTCCCTGTTCCTTTCCTCT 59.012 55.000 0.00 0.00 0.00 3.69
2945 6945 2.034221 GCCGCTCCCTGTTCCTTT 59.966 61.111 0.00 0.00 0.00 3.11
3003 7037 0.621082 CTTCCTTTGGTCTCCTCCCC 59.379 60.000 0.00 0.00 0.00 4.81
3004 7038 0.621082 CCTTCCTTTGGTCTCCTCCC 59.379 60.000 0.00 0.00 0.00 4.30
3005 7039 0.034960 GCCTTCCTTTGGTCTCCTCC 60.035 60.000 0.00 0.00 0.00 4.30
3007 7041 0.402121 GTGCCTTCCTTTGGTCTCCT 59.598 55.000 0.00 0.00 0.00 3.69
3008 7042 0.110486 TGTGCCTTCCTTTGGTCTCC 59.890 55.000 0.00 0.00 0.00 3.71
3009 7043 1.202818 ACTGTGCCTTCCTTTGGTCTC 60.203 52.381 0.00 0.00 0.00 3.36
3010 7044 0.846693 ACTGTGCCTTCCTTTGGTCT 59.153 50.000 0.00 0.00 0.00 3.85
3011 7045 0.954452 CACTGTGCCTTCCTTTGGTC 59.046 55.000 0.00 0.00 0.00 4.02
3012 7046 0.468029 CCACTGTGCCTTCCTTTGGT 60.468 55.000 1.29 0.00 0.00 3.67
3013 7047 1.181098 CCCACTGTGCCTTCCTTTGG 61.181 60.000 1.29 0.00 0.00 3.28
3015 7049 0.468029 CACCCACTGTGCCTTCCTTT 60.468 55.000 1.29 0.00 38.34 3.11
3016 7050 1.151450 CACCCACTGTGCCTTCCTT 59.849 57.895 1.29 0.00 38.34 3.36
3017 7051 2.833913 CCACCCACTGTGCCTTCCT 61.834 63.158 1.29 0.00 44.01 3.36
3020 7054 3.902112 CCCCACCCACTGTGCCTT 61.902 66.667 1.29 0.00 44.01 4.35
3024 7058 4.666253 CCAGCCCCACCCACTGTG 62.666 72.222 0.00 0.00 45.01 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.