Multiple sequence alignment - TraesCS2A01G481000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G481000 chr2A 100.000 8325 0 0 1 8325 718457656 718465980 0.000000e+00 15374.0
1 TraesCS2A01G481000 chr2A 95.800 619 22 1 2834 3448 702075819 702075201 0.000000e+00 996.0
2 TraesCS2A01G481000 chr2A 89.381 226 20 3 1142 1367 17370462 17370241 1.770000e-71 281.0
3 TraesCS2A01G481000 chr2A 98.333 120 2 0 8206 8325 120758310 120758429 2.350000e-50 211.0
4 TraesCS2A01G481000 chr2D 94.596 4589 154 30 2988 7503 584271294 584275861 0.000000e+00 7014.0
5 TraesCS2A01G481000 chr2D 94.362 1011 48 7 1994 2995 584265095 584266105 0.000000e+00 1543.0
6 TraesCS2A01G481000 chr2D 92.082 682 41 8 1163 1836 584264419 584265095 0.000000e+00 948.0
7 TraesCS2A01G481000 chr2D 92.593 378 25 3 7829 8205 584292721 584293096 2.640000e-149 540.0
8 TraesCS2A01G481000 chr2D 84.696 477 58 10 57 530 584263732 584264196 5.890000e-126 462.0
9 TraesCS2A01G481000 chr2D 86.618 411 47 7 1 409 584263490 584263894 1.650000e-121 448.0
10 TraesCS2A01G481000 chr2D 96.970 66 1 1 705 769 584264338 584264403 8.830000e-20 110.0
11 TraesCS2A01G481000 chr2D 98.387 62 1 0 7773 7834 584276026 584276087 8.830000e-20 110.0
12 TraesCS2A01G481000 chr2D 90.244 82 4 3 1190 1271 353923900 353923977 4.110000e-18 104.0
13 TraesCS2A01G481000 chr2D 100.000 29 0 0 7542 7570 584275865 584275893 4.000000e-03 54.7
14 TraesCS2A01G481000 chr5D 93.146 2699 148 25 2347 5034 375987745 375990417 0.000000e+00 3925.0
15 TraesCS2A01G481000 chr5D 92.216 2261 107 28 5183 7398 375990463 375992699 0.000000e+00 3136.0
16 TraesCS2A01G481000 chr5D 87.662 924 64 19 817 1725 375986875 375987763 0.000000e+00 1029.0
17 TraesCS2A01G481000 chr5D 89.305 374 36 3 7833 8205 375994190 375994560 4.550000e-127 466.0
18 TraesCS2A01G481000 chr5D 82.667 375 41 13 7395 7759 375992726 375993086 2.260000e-80 311.0
19 TraesCS2A01G481000 chr5D 89.076 119 13 0 8206 8324 504108184 504108302 1.870000e-31 148.0
20 TraesCS2A01G481000 chr5D 100.000 54 0 0 7780 7833 375993084 375993137 5.320000e-17 100.0
21 TraesCS2A01G481000 chr5B 90.726 2577 144 48 5183 7676 448889042 448891606 0.000000e+00 3347.0
22 TraesCS2A01G481000 chr5B 94.483 1740 88 5 2347 4080 448885869 448887606 0.000000e+00 2675.0
23 TraesCS2A01G481000 chr5B 90.748 962 63 17 4077 5034 448888057 448888996 0.000000e+00 1260.0
24 TraesCS2A01G481000 chr5B 88.474 911 62 14 826 1725 448885009 448885887 0.000000e+00 1061.0
25 TraesCS2A01G481000 chr5B 96.667 120 4 0 8206 8325 520252708 520252827 5.100000e-47 200.0
26 TraesCS2A01G481000 chr5B 93.750 64 4 0 8250 8313 706042530 706042467 6.880000e-16 97.1
27 TraesCS2A01G481000 chr5B 96.078 51 1 1 7780 7829 448891921 448891971 1.930000e-11 82.4
28 TraesCS2A01G481000 chr5A 93.346 2089 105 20 5183 7243 477003067 477005149 0.000000e+00 3057.0
29 TraesCS2A01G481000 chr5A 94.659 1554 73 8 2347 3895 477000395 477001943 0.000000e+00 2401.0
30 TraesCS2A01G481000 chr5A 90.385 1144 75 20 3943 5071 477001943 477003066 0.000000e+00 1471.0
31 TraesCS2A01G481000 chr5A 89.822 786 42 15 947 1725 476999659 477000413 0.000000e+00 974.0
32 TraesCS2A01G481000 chr5A 100.000 55 0 0 7780 7834 477005363 477005417 1.480000e-17 102.0
33 TraesCS2A01G481000 chr2B 94.766 1452 47 11 3371 4809 703700095 703701530 0.000000e+00 2233.0
34 TraesCS2A01G481000 chr2B 96.892 1126 31 4 4846 5968 703701528 703702652 0.000000e+00 1882.0
35 TraesCS2A01G481000 chr2B 92.822 1003 63 7 1994 2987 703688921 703689923 0.000000e+00 1445.0
36 TraesCS2A01G481000 chr2B 93.111 929 39 10 6103 7011 703702650 703703573 0.000000e+00 1338.0
37 TraesCS2A01G481000 chr2B 93.019 616 39 4 840 1455 703666095 703666706 0.000000e+00 896.0
38 TraesCS2A01G481000 chr2B 84.652 847 61 22 6959 7754 703703676 703704504 0.000000e+00 780.0
39 TraesCS2A01G481000 chr2B 98.171 328 3 1 2988 3312 703699691 703700018 3.370000e-158 569.0
40 TraesCS2A01G481000 chr2B 89.628 376 34 4 1449 1821 703688536 703688909 2.720000e-129 473.0
41 TraesCS2A01G481000 chr2B 87.353 340 39 3 7830 8168 703704573 703704909 3.640000e-103 387.0
42 TraesCS2A01G481000 chr2B 95.556 45 2 0 3341 3385 703700008 703700052 1.160000e-08 73.1
43 TraesCS2A01G481000 chr4A 96.769 619 16 1 2834 3448 524283134 524283752 0.000000e+00 1029.0
44 TraesCS2A01G481000 chr4A 97.500 120 3 0 8206 8325 598143105 598143224 1.100000e-48 206.0
45 TraesCS2A01G481000 chr1B 81.379 725 92 18 5540 6239 499543739 499544445 1.220000e-152 551.0
46 TraesCS2A01G481000 chr1D 84.708 497 58 6 5759 6239 374479973 374480467 1.630000e-131 481.0
47 TraesCS2A01G481000 chr1D 85.654 237 22 7 5533 5768 374479142 374479367 1.080000e-58 239.0
48 TraesCS2A01G481000 chr1D 91.463 82 3 3 1190 1271 475432700 475432623 8.830000e-20 110.0
49 TraesCS2A01G481000 chr1A 84.713 157 12 8 5615 5760 474235567 474235722 6.730000e-31 147.0
50 TraesCS2A01G481000 chr1A 90.099 101 7 1 5525 5622 474234171 474234271 2.440000e-25 128.0
51 TraesCS2A01G481000 chr7D 88.172 93 4 6 1190 1281 54645094 54645180 4.110000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G481000 chr2A 718457656 718465980 8324 False 15374.000000 15374 100.000000 1 8325 1 chr2A.!!$F2 8324
1 TraesCS2A01G481000 chr2A 702075201 702075819 618 True 996.000000 996 95.800000 2834 3448 1 chr2A.!!$R2 614
2 TraesCS2A01G481000 chr2D 584271294 584276087 4793 False 2392.900000 7014 97.661000 2988 7834 3 chr2D.!!$F4 4846
3 TraesCS2A01G481000 chr2D 584263490 584266105 2615 False 702.200000 1543 90.945600 1 2995 5 chr2D.!!$F3 2994
4 TraesCS2A01G481000 chr5D 375986875 375994560 7685 False 1494.500000 3925 90.832667 817 8205 6 chr5D.!!$F2 7388
5 TraesCS2A01G481000 chr5B 448885009 448891971 6962 False 1685.080000 3347 92.101800 826 7829 5 chr5B.!!$F2 7003
6 TraesCS2A01G481000 chr5A 476999659 477005417 5758 False 1601.000000 3057 93.642400 947 7834 5 chr5A.!!$F1 6887
7 TraesCS2A01G481000 chr2B 703699691 703704909 5218 False 1037.442857 2233 92.928714 2988 8168 7 chr2B.!!$F3 5180
8 TraesCS2A01G481000 chr2B 703688536 703689923 1387 False 959.000000 1445 91.225000 1449 2987 2 chr2B.!!$F2 1538
9 TraesCS2A01G481000 chr2B 703666095 703666706 611 False 896.000000 896 93.019000 840 1455 1 chr2B.!!$F1 615
10 TraesCS2A01G481000 chr4A 524283134 524283752 618 False 1029.000000 1029 96.769000 2834 3448 1 chr4A.!!$F1 614
11 TraesCS2A01G481000 chr1B 499543739 499544445 706 False 551.000000 551 81.379000 5540 6239 1 chr1B.!!$F1 699
12 TraesCS2A01G481000 chr1D 374479142 374480467 1325 False 360.000000 481 85.181000 5533 6239 2 chr1D.!!$F1 706

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 1010 0.032267 CAGCTAACCCTAGTAGCCGC 59.968 60.000 7.12 0.00 37.54 6.53 F
1702 1943 0.031178 GCAAATTAGGCTGATGGGCG 59.969 55.000 0.00 0.00 45.89 6.13 F
1894 2137 0.035630 CAGGCTGTGAAAGGAGGGAG 60.036 60.000 6.28 0.00 0.00 4.30 F
1922 2165 0.035881 TTCACAGCAGAGCAGGAAGG 59.964 55.000 0.00 0.00 0.00 3.46 F
2171 2414 0.038343 CACGCCCCAACAGATTTTGG 60.038 55.000 0.00 0.00 45.11 3.28 F
3391 3713 1.132834 TGTTTCTGCATATTGGCGCTG 59.867 47.619 7.64 0.00 36.28 5.18 F
4354 5150 1.362768 TTGCATGCTCTTCTGTAGCG 58.637 50.000 20.33 0.00 43.11 4.26 F
5137 5946 1.144093 CCTTGTACCCTTGGGAACACA 59.856 52.381 13.39 10.03 42.67 3.72 F
5838 7300 0.037232 CAGAAGGGGGTTCAGACGAC 60.037 60.000 0.00 0.00 37.67 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1875 2118 0.035630 CTCCCTCCTTTCACAGCCTG 60.036 60.000 0.00 0.00 0.00 4.85 R
3464 3793 0.604578 CCCTTGTGATTTGCCTGTGG 59.395 55.000 0.00 0.00 0.00 4.17 R
3466 3796 2.514803 GTACCCTTGTGATTTGCCTGT 58.485 47.619 0.00 0.00 0.00 4.00 R
3831 4161 3.947868 AGAACAGTACAGCAGCATGAAT 58.052 40.909 0.00 0.00 39.69 2.57 R
4111 4896 0.108615 CTAGTGAGCTGACCAACCGG 60.109 60.000 0.00 0.00 38.77 5.28 R
5113 5921 0.104356 TCCCAAGGGTACAAGGTGGA 60.104 55.000 4.80 0.00 36.47 4.02 R
5715 6537 1.269621 GGATCAATAGGACGACCACGG 60.270 57.143 6.71 0.00 44.46 4.94 R
6981 8480 0.462759 GCTTATTGCTCGAGCCACCT 60.463 55.000 33.23 17.41 41.18 4.00 R
7547 9248 0.037975 CCTCCACCAAAATGCTGCAC 60.038 55.000 3.57 0.00 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.851658 CTCGTTGCAAACCCTTTTGG 58.148 50.000 0.00 0.00 46.28 3.28
74 75 1.136085 CAATTCGAACGACCGCAACAT 60.136 47.619 0.00 0.00 0.00 2.71
75 76 0.442310 ATTCGAACGACCGCAACATG 59.558 50.000 0.00 0.00 0.00 3.21
76 77 1.561717 TTCGAACGACCGCAACATGG 61.562 55.000 0.00 0.00 0.00 3.66
107 108 0.182537 AAGCACCCTAGCACAACACA 59.817 50.000 0.00 0.00 36.85 3.72
108 109 0.182537 AGCACCCTAGCACAACACAA 59.817 50.000 0.00 0.00 36.85 3.33
123 124 4.183101 CAACACAATCCTTGTTGCAAAGT 58.817 39.130 0.00 0.00 45.36 2.66
144 145 3.494045 TTGCACGTGACTAGAGATCAG 57.506 47.619 22.23 0.00 0.00 2.90
154 155 3.607741 ACTAGAGATCAGACGGTTCGAA 58.392 45.455 0.00 0.00 0.00 3.71
155 156 4.200874 ACTAGAGATCAGACGGTTCGAAT 58.799 43.478 0.00 0.00 0.00 3.34
156 157 3.428746 AGAGATCAGACGGTTCGAATG 57.571 47.619 0.00 0.00 0.00 2.67
160 161 2.347697 TCAGACGGTTCGAATGACTG 57.652 50.000 19.15 19.15 0.00 3.51
164 165 1.732259 GACGGTTCGAATGACTGCAAT 59.268 47.619 0.00 0.00 0.00 3.56
166 167 2.671396 ACGGTTCGAATGACTGCAATAC 59.329 45.455 0.00 0.00 0.00 1.89
167 168 2.670905 CGGTTCGAATGACTGCAATACA 59.329 45.455 0.00 0.00 0.00 2.29
255 256 2.412089 GGAGACCAGACGATTCAAAACG 59.588 50.000 0.00 0.00 0.00 3.60
256 257 3.314553 GAGACCAGACGATTCAAAACGA 58.685 45.455 0.00 0.00 0.00 3.85
258 259 3.057734 GACCAGACGATTCAAAACGACT 58.942 45.455 0.00 0.00 35.38 4.18
259 260 2.800544 ACCAGACGATTCAAAACGACTG 59.199 45.455 14.38 14.38 45.67 3.51
271 272 0.375803 AACGACTGCAACACGGTTTC 59.624 50.000 10.58 0.00 38.28 2.78
285 286 0.752658 GGTTTCTGTTGCAAAGCCCT 59.247 50.000 0.00 0.00 0.00 5.19
288 289 1.609208 TTCTGTTGCAAAGCCCTCTC 58.391 50.000 0.00 0.00 0.00 3.20
298 299 2.280797 GCCCTCTCGCACAACACA 60.281 61.111 0.00 0.00 0.00 3.72
299 300 1.891919 GCCCTCTCGCACAACACAA 60.892 57.895 0.00 0.00 0.00 3.33
308 309 2.425312 TCGCACAACACAATCCTTGTTT 59.575 40.909 0.00 0.00 43.23 2.83
346 530 3.581101 TGGGATGGAAATGGTTTGAACA 58.419 40.909 0.00 0.00 0.00 3.18
353 537 4.141756 TGGAAATGGTTTGAACAACTGCAT 60.142 37.500 0.00 0.00 0.00 3.96
356 540 4.877378 ATGGTTTGAACAACTGCATCAT 57.123 36.364 0.00 0.00 0.00 2.45
359 543 4.168760 GGTTTGAACAACTGCATCATAGC 58.831 43.478 0.00 0.00 0.00 2.97
362 546 2.931969 TGAACAACTGCATCATAGCTCG 59.068 45.455 0.00 0.00 34.99 5.03
366 550 0.531532 ACTGCATCATAGCTCGTGCC 60.532 55.000 5.73 0.00 40.80 5.01
372 556 0.672091 TCATAGCTCGTGCCGCAAAA 60.672 50.000 5.73 0.00 40.80 2.44
373 557 0.167908 CATAGCTCGTGCCGCAAAAA 59.832 50.000 5.73 0.00 40.80 1.94
382 566 2.272447 GCCGCAAAAACCCCTAGCA 61.272 57.895 0.00 0.00 0.00 3.49
416 600 3.431055 CAAAGGTTGCGGCTGACA 58.569 55.556 0.00 0.00 0.00 3.58
437 621 2.059541 CGACGGGAGAACTGTTTTCTC 58.940 52.381 10.42 6.01 43.08 2.87
458 642 1.305219 TGCGCCATCTAACAACTGCC 61.305 55.000 4.18 0.00 0.00 4.85
469 653 2.683933 AACTGCCGAGGGACCGAT 60.684 61.111 0.00 0.00 0.00 4.18
505 689 2.029666 GGCCGACGCATAGCATCT 59.970 61.111 0.00 0.00 36.38 2.90
557 741 6.590068 TGAAACAATTTTCACATCCCAATGT 58.410 32.000 0.00 0.00 45.08 2.71
558 742 7.052873 TGAAACAATTTTCACATCCCAATGTT 58.947 30.769 0.00 0.00 45.08 2.71
559 743 7.555554 TGAAACAATTTTCACATCCCAATGTTT 59.444 29.630 0.00 0.00 45.08 2.83
560 744 7.878547 AACAATTTTCACATCCCAATGTTTT 57.121 28.000 0.00 0.00 43.74 2.43
561 745 7.878547 ACAATTTTCACATCCCAATGTTTTT 57.121 28.000 0.00 0.00 43.74 1.94
562 746 7.705214 ACAATTTTCACATCCCAATGTTTTTG 58.295 30.769 0.00 0.00 43.74 2.44
563 747 7.555554 ACAATTTTCACATCCCAATGTTTTTGA 59.444 29.630 0.00 0.00 43.74 2.69
564 748 8.569641 CAATTTTCACATCCCAATGTTTTTGAT 58.430 29.630 0.00 0.00 43.74 2.57
565 749 8.694581 ATTTTCACATCCCAATGTTTTTGATT 57.305 26.923 0.00 0.00 43.74 2.57
566 750 7.727331 TTTCACATCCCAATGTTTTTGATTC 57.273 32.000 0.00 0.00 43.74 2.52
567 751 5.792741 TCACATCCCAATGTTTTTGATTCC 58.207 37.500 0.00 0.00 43.74 3.01
568 752 5.543405 TCACATCCCAATGTTTTTGATTCCT 59.457 36.000 0.00 0.00 43.74 3.36
569 753 6.043012 TCACATCCCAATGTTTTTGATTCCTT 59.957 34.615 0.00 0.00 43.74 3.36
570 754 6.369615 CACATCCCAATGTTTTTGATTCCTTC 59.630 38.462 0.00 0.00 43.74 3.46
571 755 6.043012 ACATCCCAATGTTTTTGATTCCTTCA 59.957 34.615 0.00 0.00 43.74 3.02
592 780 6.029346 TCATTCAATCAAAAGAAGCCTTCC 57.971 37.500 0.00 0.00 0.00 3.46
594 782 5.712152 TTCAATCAAAAGAAGCCTTCCTC 57.288 39.130 0.00 0.00 0.00 3.71
623 811 9.762381 TTTTTGAGGGATATAAAAGAAGCCTTA 57.238 29.630 0.00 0.00 31.15 2.69
624 812 8.747538 TTTGAGGGATATAAAAGAAGCCTTAC 57.252 34.615 0.00 0.00 31.15 2.34
625 813 7.691993 TGAGGGATATAAAAGAAGCCTTACT 57.308 36.000 0.00 0.00 31.15 2.24
626 814 8.102484 TGAGGGATATAAAAGAAGCCTTACTT 57.898 34.615 0.00 0.00 42.98 2.24
627 815 8.557450 TGAGGGATATAAAAGAAGCCTTACTTT 58.443 33.333 0.00 0.00 39.29 2.66
628 816 9.409918 GAGGGATATAAAAGAAGCCTTACTTTT 57.590 33.333 14.59 14.59 44.71 2.27
629 817 9.769677 AGGGATATAAAAGAAGCCTTACTTTTT 57.230 29.630 15.08 8.54 41.51 1.94
653 841 8.664669 TTTTTGAGGGATATAAAAGAAGCCTT 57.335 30.769 0.00 0.00 0.00 4.35
668 856 1.490910 AGCCTTACTTAGACATGGCCC 59.509 52.381 0.00 0.00 41.08 5.80
779 996 4.408821 CCTGCAACCGGCCAGCTA 62.409 66.667 0.00 0.00 43.89 3.32
780 997 2.359850 CTGCAACCGGCCAGCTAA 60.360 61.111 0.00 0.00 43.89 3.09
783 1000 2.750237 CAACCGGCCAGCTAACCC 60.750 66.667 0.00 0.00 0.00 4.11
784 1001 2.933834 AACCGGCCAGCTAACCCT 60.934 61.111 0.00 0.00 0.00 4.34
785 1002 1.614226 AACCGGCCAGCTAACCCTA 60.614 57.895 0.00 0.00 0.00 3.53
786 1003 1.623542 AACCGGCCAGCTAACCCTAG 61.624 60.000 0.00 0.00 0.00 3.02
787 1004 2.064581 CCGGCCAGCTAACCCTAGT 61.065 63.158 2.24 0.00 0.00 2.57
788 1005 0.757935 CCGGCCAGCTAACCCTAGTA 60.758 60.000 2.24 0.00 0.00 1.82
789 1006 0.674534 CGGCCAGCTAACCCTAGTAG 59.325 60.000 2.24 0.00 0.00 2.57
790 1007 0.393448 GGCCAGCTAACCCTAGTAGC 59.607 60.000 0.00 3.26 37.12 3.58
791 1008 0.393448 GCCAGCTAACCCTAGTAGCC 59.607 60.000 7.12 0.00 37.54 3.93
792 1009 0.674534 CCAGCTAACCCTAGTAGCCG 59.325 60.000 7.12 0.00 37.54 5.52
793 1010 0.032267 CAGCTAACCCTAGTAGCCGC 59.968 60.000 7.12 0.00 37.54 6.53
794 1011 1.114119 AGCTAACCCTAGTAGCCGCC 61.114 60.000 7.12 0.00 37.54 6.13
795 1012 1.658673 CTAACCCTAGTAGCCGCCG 59.341 63.158 0.00 0.00 0.00 6.46
796 1013 2.417649 CTAACCCTAGTAGCCGCCGC 62.418 65.000 0.00 0.00 0.00 6.53
798 1015 4.587189 CCCTAGTAGCCGCCGCAC 62.587 72.222 0.00 0.00 37.52 5.34
799 1016 4.925576 CCTAGTAGCCGCCGCACG 62.926 72.222 0.00 0.00 43.15 5.34
954 1174 3.950395 GTCCTACTAGGGTTTTAGAGCGA 59.050 47.826 2.04 0.00 35.59 4.93
955 1175 4.400567 GTCCTACTAGGGTTTTAGAGCGAA 59.599 45.833 2.04 0.00 35.59 4.70
1186 1407 2.217038 TTCCTCTTCCGCCAGCAGT 61.217 57.895 0.00 0.00 0.00 4.40
1188 1409 2.125350 CTCTTCCGCCAGCAGTCC 60.125 66.667 0.00 0.00 0.00 3.85
1427 1654 2.147150 GAAGGTGAGCTCCTGTTCAAC 58.853 52.381 12.15 0.00 40.73 3.18
1434 1661 4.390297 GTGAGCTCCTGTTCAACTCATTAC 59.610 45.833 12.15 0.00 39.39 1.89
1435 1662 3.935828 GAGCTCCTGTTCAACTCATTACC 59.064 47.826 0.87 0.00 0.00 2.85
1455 1682 9.342308 CATTACCTGCCTTCAGATAGAAATTTA 57.658 33.333 0.00 0.00 42.95 1.40
1457 1684 9.561069 TTACCTGCCTTCAGATAGAAATTTATC 57.439 33.333 0.00 0.00 42.95 1.75
1478 1706 3.785887 TCTGGTAAATTGGTGGGCTAGAT 59.214 43.478 0.00 0.00 0.00 1.98
1548 1780 1.597663 GGTCTGTTTGTCGTGGTCAAG 59.402 52.381 0.00 0.00 0.00 3.02
1608 1848 7.119116 GGGAAAATGTTCTGTTTCAGTTTTGTT 59.881 33.333 0.00 0.00 35.80 2.83
1624 1864 7.042321 TCAGTTTTGTTGTGTCGGATTTACTAG 60.042 37.037 0.00 0.00 0.00 2.57
1702 1943 0.031178 GCAAATTAGGCTGATGGGCG 59.969 55.000 0.00 0.00 45.89 6.13
1730 1971 8.102047 TGCATTGTCCAGGAATTCATTTATTTT 58.898 29.630 7.93 0.00 0.00 1.82
1776 2019 4.801516 CCCGCCTAATTTTCATTAAAACGG 59.198 41.667 4.82 4.82 37.41 4.44
1782 2025 5.933187 AATTTTCATTAAAACGGGGCAAC 57.067 34.783 0.00 0.00 37.41 4.17
1804 2047 4.201881 ACGAAGCCAAAAACTACACTGTTC 60.202 41.667 0.00 0.00 0.00 3.18
1821 2064 4.827087 CGCAGCACTCGGGCTCAT 62.827 66.667 0.00 0.00 43.68 2.90
1822 2065 2.894387 GCAGCACTCGGGCTCATC 60.894 66.667 0.00 0.00 43.68 2.92
1823 2066 2.580815 CAGCACTCGGGCTCATCA 59.419 61.111 0.00 0.00 43.68 3.07
1837 2080 4.088823 GCTCATCAAGCCAAAGTTACTG 57.911 45.455 0.00 0.00 45.92 2.74
1838 2081 3.753272 GCTCATCAAGCCAAAGTTACTGA 59.247 43.478 0.00 0.00 45.92 3.41
1842 2085 2.158682 TCAAGCCAAAGTTACTGAGCCA 60.159 45.455 0.00 0.00 0.00 4.75
1843 2086 2.191128 AGCCAAAGTTACTGAGCCAG 57.809 50.000 1.16 1.16 37.52 4.85
1844 2087 1.699634 AGCCAAAGTTACTGAGCCAGA 59.300 47.619 8.91 0.00 35.18 3.86
1845 2088 2.079925 GCCAAAGTTACTGAGCCAGAG 58.920 52.381 8.91 0.00 35.18 3.35
1846 2089 2.289694 GCCAAAGTTACTGAGCCAGAGA 60.290 50.000 8.91 0.00 35.18 3.10
1847 2090 3.807209 GCCAAAGTTACTGAGCCAGAGAA 60.807 47.826 8.91 1.17 35.18 2.87
1848 2091 4.389374 CCAAAGTTACTGAGCCAGAGAAA 58.611 43.478 8.91 0.00 35.18 2.52
1849 2092 4.214332 CCAAAGTTACTGAGCCAGAGAAAC 59.786 45.833 8.91 9.25 35.18 2.78
1850 2093 3.686916 AGTTACTGAGCCAGAGAAACC 57.313 47.619 8.91 0.00 35.18 3.27
1851 2094 2.028930 AGTTACTGAGCCAGAGAAACCG 60.029 50.000 8.91 0.00 35.18 4.44
1852 2095 0.246635 TACTGAGCCAGAGAAACCGC 59.753 55.000 8.91 0.00 35.18 5.68
1853 2096 1.004560 CTGAGCCAGAGAAACCGCA 60.005 57.895 0.00 0.00 32.44 5.69
1854 2097 0.603707 CTGAGCCAGAGAAACCGCAA 60.604 55.000 0.00 0.00 32.44 4.85
1855 2098 0.884704 TGAGCCAGAGAAACCGCAAC 60.885 55.000 0.00 0.00 0.00 4.17
1856 2099 1.578206 GAGCCAGAGAAACCGCAACC 61.578 60.000 0.00 0.00 0.00 3.77
1857 2100 2.626780 GCCAGAGAAACCGCAACCC 61.627 63.158 0.00 0.00 0.00 4.11
1858 2101 1.971695 CCAGAGAAACCGCAACCCC 60.972 63.158 0.00 0.00 0.00 4.95
1859 2102 1.971695 CAGAGAAACCGCAACCCCC 60.972 63.158 0.00 0.00 0.00 5.40
1860 2103 2.114411 GAGAAACCGCAACCCCCA 59.886 61.111 0.00 0.00 0.00 4.96
1861 2104 2.203437 AGAAACCGCAACCCCCAC 60.203 61.111 0.00 0.00 0.00 4.61
1862 2105 2.519780 GAAACCGCAACCCCCACA 60.520 61.111 0.00 0.00 0.00 4.17
1863 2106 2.835895 AAACCGCAACCCCCACAC 60.836 61.111 0.00 0.00 0.00 3.82
1864 2107 3.663815 AAACCGCAACCCCCACACA 62.664 57.895 0.00 0.00 0.00 3.72
1865 2108 2.937959 AAACCGCAACCCCCACACAT 62.938 55.000 0.00 0.00 0.00 3.21
1866 2109 3.372730 CCGCAACCCCCACACATG 61.373 66.667 0.00 0.00 0.00 3.21
1867 2110 4.054825 CGCAACCCCCACACATGC 62.055 66.667 0.00 0.00 0.00 4.06
1868 2111 4.054825 GCAACCCCCACACATGCG 62.055 66.667 0.00 0.00 0.00 4.73
1869 2112 4.054825 CAACCCCCACACATGCGC 62.055 66.667 0.00 0.00 0.00 6.09
1875 2118 3.520862 CCACACATGCGCCCCATC 61.521 66.667 4.18 0.00 29.71 3.51
1876 2119 2.751036 CACACATGCGCCCCATCA 60.751 61.111 4.18 0.00 29.71 3.07
1877 2120 2.438975 ACACATGCGCCCCATCAG 60.439 61.111 4.18 0.00 29.71 2.90
1878 2121 3.214123 CACATGCGCCCCATCAGG 61.214 66.667 4.18 0.00 29.71 3.86
1887 2130 2.877975 CCCCATCAGGCTGTGAAAG 58.122 57.895 15.27 1.08 39.19 2.62
1888 2131 0.682209 CCCCATCAGGCTGTGAAAGG 60.682 60.000 15.27 9.93 39.19 3.11
1889 2132 0.329261 CCCATCAGGCTGTGAAAGGA 59.671 55.000 15.27 0.00 39.19 3.36
1890 2133 1.681166 CCCATCAGGCTGTGAAAGGAG 60.681 57.143 15.27 2.05 39.19 3.69
1891 2134 1.681166 CCATCAGGCTGTGAAAGGAGG 60.681 57.143 15.27 2.60 39.19 4.30
1892 2135 0.622665 ATCAGGCTGTGAAAGGAGGG 59.377 55.000 15.27 0.00 39.19 4.30
1893 2136 0.473694 TCAGGCTGTGAAAGGAGGGA 60.474 55.000 15.27 0.00 29.64 4.20
1894 2137 0.035630 CAGGCTGTGAAAGGAGGGAG 60.036 60.000 6.28 0.00 0.00 4.30
1895 2138 1.377856 GGCTGTGAAAGGAGGGAGC 60.378 63.158 0.00 0.00 0.00 4.70
1896 2139 1.376466 GCTGTGAAAGGAGGGAGCA 59.624 57.895 0.00 0.00 0.00 4.26
1897 2140 0.250901 GCTGTGAAAGGAGGGAGCAA 60.251 55.000 0.00 0.00 0.00 3.91
1898 2141 1.819305 GCTGTGAAAGGAGGGAGCAAA 60.819 52.381 0.00 0.00 0.00 3.68
1899 2142 2.586425 CTGTGAAAGGAGGGAGCAAAA 58.414 47.619 0.00 0.00 0.00 2.44
1900 2143 2.958355 CTGTGAAAGGAGGGAGCAAAAA 59.042 45.455 0.00 0.00 0.00 1.94
1917 2160 3.705043 AAAAAGTTCACAGCAGAGCAG 57.295 42.857 0.00 0.00 0.00 4.24
1918 2161 1.602311 AAAGTTCACAGCAGAGCAGG 58.398 50.000 0.00 0.00 0.00 4.85
1919 2162 0.761187 AAGTTCACAGCAGAGCAGGA 59.239 50.000 0.00 0.00 0.00 3.86
1920 2163 0.761187 AGTTCACAGCAGAGCAGGAA 59.239 50.000 0.00 0.00 0.00 3.36
1921 2164 1.155042 GTTCACAGCAGAGCAGGAAG 58.845 55.000 0.00 0.00 0.00 3.46
1922 2165 0.035881 TTCACAGCAGAGCAGGAAGG 59.964 55.000 0.00 0.00 0.00 3.46
1923 2166 0.833409 TCACAGCAGAGCAGGAAGGA 60.833 55.000 0.00 0.00 0.00 3.36
1924 2167 0.035881 CACAGCAGAGCAGGAAGGAA 59.964 55.000 0.00 0.00 0.00 3.36
1925 2168 0.767375 ACAGCAGAGCAGGAAGGAAA 59.233 50.000 0.00 0.00 0.00 3.13
1926 2169 1.143684 ACAGCAGAGCAGGAAGGAAAA 59.856 47.619 0.00 0.00 0.00 2.29
1927 2170 1.811359 CAGCAGAGCAGGAAGGAAAAG 59.189 52.381 0.00 0.00 0.00 2.27
1928 2171 1.423161 AGCAGAGCAGGAAGGAAAAGT 59.577 47.619 0.00 0.00 0.00 2.66
1929 2172 2.158549 AGCAGAGCAGGAAGGAAAAGTT 60.159 45.455 0.00 0.00 0.00 2.66
1930 2173 3.073062 AGCAGAGCAGGAAGGAAAAGTTA 59.927 43.478 0.00 0.00 0.00 2.24
1931 2174 3.821033 GCAGAGCAGGAAGGAAAAGTTAA 59.179 43.478 0.00 0.00 0.00 2.01
1932 2175 4.083057 GCAGAGCAGGAAGGAAAAGTTAAG 60.083 45.833 0.00 0.00 0.00 1.85
1933 2176 5.066593 CAGAGCAGGAAGGAAAAGTTAAGT 58.933 41.667 0.00 0.00 0.00 2.24
1934 2177 5.532779 CAGAGCAGGAAGGAAAAGTTAAGTT 59.467 40.000 0.00 0.00 0.00 2.66
1935 2178 6.710744 CAGAGCAGGAAGGAAAAGTTAAGTTA 59.289 38.462 0.00 0.00 0.00 2.24
1936 2179 6.937465 AGAGCAGGAAGGAAAAGTTAAGTTAG 59.063 38.462 0.00 0.00 0.00 2.34
1937 2180 6.004574 AGCAGGAAGGAAAAGTTAAGTTAGG 58.995 40.000 0.00 0.00 0.00 2.69
1938 2181 5.335740 GCAGGAAGGAAAAGTTAAGTTAGGC 60.336 44.000 0.00 0.00 0.00 3.93
1939 2182 6.004574 CAGGAAGGAAAAGTTAAGTTAGGCT 58.995 40.000 0.00 0.00 0.00 4.58
1940 2183 7.166167 CAGGAAGGAAAAGTTAAGTTAGGCTA 58.834 38.462 0.00 0.00 0.00 3.93
1941 2184 7.664318 CAGGAAGGAAAAGTTAAGTTAGGCTAA 59.336 37.037 2.04 2.04 0.00 3.09
1942 2185 8.222637 AGGAAGGAAAAGTTAAGTTAGGCTAAA 58.777 33.333 8.86 0.00 0.00 1.85
1943 2186 8.295288 GGAAGGAAAAGTTAAGTTAGGCTAAAC 58.705 37.037 8.86 3.61 0.00 2.01
1944 2187 8.991783 AAGGAAAAGTTAAGTTAGGCTAAACT 57.008 30.769 8.86 6.03 41.46 2.66
1954 2197 9.947433 TTAAGTTAGGCTAAACTTATTACAGCA 57.053 29.630 20.12 8.87 46.17 4.41
1956 2199 9.462606 AAGTTAGGCTAAACTTATTACAGCATT 57.537 29.630 8.86 0.00 45.53 3.56
1957 2200 9.462606 AGTTAGGCTAAACTTATTACAGCATTT 57.537 29.630 8.86 0.00 36.26 2.32
1962 2205 9.849166 GGCTAAACTTATTACAGCATTTTTACA 57.151 29.630 0.00 0.00 33.86 2.41
1967 2210 9.573133 AACTTATTACAGCATTTTTACATCAGC 57.427 29.630 0.00 0.00 0.00 4.26
1968 2211 8.739039 ACTTATTACAGCATTTTTACATCAGCA 58.261 29.630 0.00 0.00 0.00 4.41
1969 2212 9.740239 CTTATTACAGCATTTTTACATCAGCAT 57.260 29.630 0.00 0.00 0.00 3.79
1971 2214 8.638685 ATTACAGCATTTTTACATCAGCATTC 57.361 30.769 0.00 0.00 0.00 2.67
1972 2215 6.028146 ACAGCATTTTTACATCAGCATTCA 57.972 33.333 0.00 0.00 0.00 2.57
1973 2216 6.097356 ACAGCATTTTTACATCAGCATTCAG 58.903 36.000 0.00 0.00 0.00 3.02
1974 2217 5.005394 CAGCATTTTTACATCAGCATTCAGC 59.995 40.000 0.00 0.00 46.19 4.26
1988 2231 3.557228 ATTCAGCTGGAATGGACTCTC 57.443 47.619 15.13 0.00 44.51 3.20
1989 2232 1.942776 TCAGCTGGAATGGACTCTCA 58.057 50.000 15.13 0.00 0.00 3.27
1990 2233 2.259917 TCAGCTGGAATGGACTCTCAA 58.740 47.619 15.13 0.00 0.00 3.02
1991 2234 2.639347 TCAGCTGGAATGGACTCTCAAA 59.361 45.455 15.13 0.00 0.00 2.69
1992 2235 2.746362 CAGCTGGAATGGACTCTCAAAC 59.254 50.000 5.57 0.00 0.00 2.93
1993 2236 2.087646 GCTGGAATGGACTCTCAAACC 58.912 52.381 0.00 0.00 0.00 3.27
1994 2237 2.553028 GCTGGAATGGACTCTCAAACCA 60.553 50.000 0.00 0.00 38.09 3.67
1995 2238 3.754965 CTGGAATGGACTCTCAAACCAA 58.245 45.455 0.00 0.00 37.24 3.67
1996 2239 4.338879 CTGGAATGGACTCTCAAACCAAT 58.661 43.478 0.00 0.00 37.24 3.16
1997 2240 4.081406 TGGAATGGACTCTCAAACCAATG 58.919 43.478 0.00 0.00 37.24 2.82
1998 2241 3.119352 GGAATGGACTCTCAAACCAATGC 60.119 47.826 0.00 0.00 37.24 3.56
2002 2245 2.087646 GACTCTCAAACCAATGCCTCC 58.912 52.381 0.00 0.00 0.00 4.30
2020 2263 1.667830 CGCACTTTCTTCTCGCCCA 60.668 57.895 0.00 0.00 0.00 5.36
2072 2315 3.053455 GAGTTATCTTCTTGCCCGATCG 58.947 50.000 8.51 8.51 0.00 3.69
2138 2381 3.833650 TGCACAGGATTTTCCATTGATGT 59.166 39.130 0.00 0.00 39.61 3.06
2156 2399 0.652592 GTATCATGGCACTCACACGC 59.347 55.000 0.00 0.00 0.00 5.34
2171 2414 0.038343 CACGCCCCAACAGATTTTGG 60.038 55.000 0.00 0.00 45.11 3.28
2216 2459 6.757947 CCTGGAAACAAATATCATTTCGCATT 59.242 34.615 0.00 0.00 42.06 3.56
2240 2484 5.053145 GTCCATAAGTCCAGATAACAGCAG 58.947 45.833 0.00 0.00 0.00 4.24
2261 2505 4.034285 GCACAGGCTATATTAACCCCAT 57.966 45.455 0.00 0.00 36.96 4.00
2332 2580 5.106277 GGAATTTGAAAGTCGAAACCTAGGG 60.106 44.000 14.81 0.00 0.00 3.53
2343 2591 5.527582 GTCGAAACCTAGGGTACTACGATAA 59.472 44.000 14.81 0.00 33.12 1.75
2376 2624 7.933577 GTCCAGGAATTCATTCATACTGATACA 59.066 37.037 7.93 0.00 38.53 2.29
2378 2626 9.293404 CCAGGAATTCATTCATACTGATACAAT 57.707 33.333 7.93 0.00 38.53 2.71
2479 2728 6.323996 CACTGTTCCCAGAGTATATGGTCTTA 59.676 42.308 0.00 0.00 41.50 2.10
2537 2786 3.184541 CATTAGGAAGTGTAACCGGACG 58.815 50.000 9.46 0.00 37.80 4.79
2608 2857 2.166664 GGTCGCAGTGGAGTTTCTAGAT 59.833 50.000 0.00 0.00 0.00 1.98
2610 2859 2.826128 TCGCAGTGGAGTTTCTAGATGT 59.174 45.455 0.00 0.00 0.00 3.06
3315 3580 1.690283 CCAGCAGTGACGATGAAGCG 61.690 60.000 0.00 0.00 37.29 4.68
3391 3713 1.132834 TGTTTCTGCATATTGGCGCTG 59.867 47.619 7.64 0.00 36.28 5.18
3592 3922 5.918608 GAGACTGGCTCCAATTACTATTCA 58.081 41.667 0.00 0.00 37.69 2.57
3796 4126 5.453587 GCTACAGAAATGCAATGAACGATTC 59.546 40.000 0.00 0.00 0.00 2.52
3803 4133 2.811431 TGCAATGAACGATTCGAGGTTT 59.189 40.909 13.95 0.00 0.00 3.27
3895 4225 4.632153 ACTCAGTTACACAGTGACCATTC 58.368 43.478 7.81 0.00 31.01 2.67
4196 4981 9.936759 AGTGTTCTCTGAAAATAAAACCAAAAA 57.063 25.926 0.00 0.00 0.00 1.94
4232 5025 2.223377 GGTTGGTGTGAGCTAGTTTTCG 59.777 50.000 0.00 0.00 0.00 3.46
4248 5041 6.496338 AGTTTTCGTCCAATGGTTAAGATC 57.504 37.500 0.00 0.00 0.00 2.75
4258 5051 7.282450 GTCCAATGGTTAAGATCGTTAAATCCT 59.718 37.037 0.00 0.00 0.00 3.24
4260 5053 7.067008 CCAATGGTTAAGATCGTTAAATCCTGT 59.933 37.037 0.00 0.00 0.00 4.00
4261 5054 8.458843 CAATGGTTAAGATCGTTAAATCCTGTT 58.541 33.333 0.00 0.00 0.00 3.16
4262 5055 7.605410 TGGTTAAGATCGTTAAATCCTGTTC 57.395 36.000 0.00 0.00 0.00 3.18
4267 5060 7.602517 AAGATCGTTAAATCCTGTTCTTCTG 57.397 36.000 0.00 0.00 0.00 3.02
4298 5094 4.397417 GGCTTGTTCTGACTTGATATGCTT 59.603 41.667 0.00 0.00 0.00 3.91
4354 5150 1.362768 TTGCATGCTCTTCTGTAGCG 58.637 50.000 20.33 0.00 43.11 4.26
4446 5243 5.297776 GGTAAGGATGATGATGTTGAAGGTG 59.702 44.000 0.00 0.00 0.00 4.00
4506 5303 9.605275 TTGTTGAACTTCTATCCATATCTTCAG 57.395 33.333 0.00 0.00 0.00 3.02
4732 5530 4.199310 TCCTCTGTATTTGTAGCCAATGC 58.801 43.478 0.00 0.00 37.95 3.56
4751 5549 5.557576 ATGCTGTTGCTTCTCTGGATATA 57.442 39.130 0.00 0.00 40.48 0.86
4759 5557 8.677300 TGTTGCTTCTCTGGATATATTTGAAAC 58.323 33.333 0.00 0.00 0.00 2.78
4895 5693 7.290857 TGACTCGCTTATTCATCTTTTGTAC 57.709 36.000 0.00 0.00 0.00 2.90
5074 5882 5.105756 GGTTTGCAGTGCTACCTTAAATCAT 60.106 40.000 24.17 0.00 33.51 2.45
5113 5921 4.021280 TGCTGGTCATGTTGCATATGTTTT 60.021 37.500 4.29 0.00 0.00 2.43
5115 5923 5.070770 TGGTCATGTTGCATATGTTTTCC 57.929 39.130 4.29 9.40 0.00 3.13
5137 5946 1.144093 CCTTGTACCCTTGGGAACACA 59.856 52.381 13.39 10.03 42.67 3.72
5149 5958 6.659242 CCCTTGGGAACACATATGATTATACC 59.341 42.308 10.38 3.50 42.67 2.73
5278 6089 7.889469 AGATGCATAAATTTGGCTATACTTGG 58.111 34.615 15.01 0.00 0.00 3.61
5393 6205 5.473162 TGTAAAATACACATGCAGTCTTGCT 59.527 36.000 0.00 0.00 41.45 3.91
5407 6227 3.901844 AGTCTTGCTTACCTTGTGTCCTA 59.098 43.478 0.00 0.00 0.00 2.94
5410 6232 3.678056 TGCTTACCTTGTGTCCTAGTG 57.322 47.619 0.00 0.00 0.00 2.74
5484 6306 8.656806 TCACCTAAGTTTCCTTGATTCTTTCTA 58.343 33.333 0.00 0.00 31.89 2.10
5646 6468 4.515191 TGTCTGTTTTGGCATCTACAGTTC 59.485 41.667 17.89 14.11 39.16 3.01
5649 6471 3.253188 TGTTTTGGCATCTACAGTTCTGC 59.747 43.478 0.00 0.00 0.00 4.26
5656 6478 3.616379 GCATCTACAGTTCTGCTTCACTC 59.384 47.826 0.00 0.00 0.00 3.51
5715 6537 7.226720 TGTCCTTCATTGTTAGTCAAGAAAGAC 59.773 37.037 0.00 0.00 39.55 3.01
5721 6543 3.133362 TGTTAGTCAAGAAAGACCGTGGT 59.867 43.478 0.00 0.00 39.34 4.16
5838 7300 0.037232 CAGAAGGGGGTTCAGACGAC 60.037 60.000 0.00 0.00 37.67 4.34
6300 7769 3.367703 CCGATGAAGCTGGCAGAATTTTT 60.368 43.478 20.86 3.54 0.00 1.94
6597 8066 0.811616 GCGTTGATCCATCGGAGCTT 60.812 55.000 0.00 0.00 39.11 3.74
6628 8097 2.840066 CGCTCCCCGCACACAAAAA 61.840 57.895 0.00 0.00 39.08 1.94
6731 8200 2.177394 TTATGCAGGCTCACGTCAAA 57.823 45.000 0.00 0.00 0.00 2.69
6732 8201 1.438651 TATGCAGGCTCACGTCAAAC 58.561 50.000 0.00 0.00 0.00 2.93
6879 8370 4.482990 ACCCCTTGTGAAAATGTGATCTT 58.517 39.130 0.00 0.00 0.00 2.40
6897 8389 1.331756 CTTGTGCCATTCCAGATACGC 59.668 52.381 0.00 0.00 0.00 4.42
6933 8431 4.321527 GCTTTCTCTTCTGGGGATTTTGTG 60.322 45.833 0.00 0.00 0.00 3.33
6935 8433 4.934797 TCTCTTCTGGGGATTTTGTGAT 57.065 40.909 0.00 0.00 0.00 3.06
6937 8435 4.537688 TCTCTTCTGGGGATTTTGTGATCT 59.462 41.667 0.00 0.00 0.00 2.75
6939 8437 5.256474 TCTTCTGGGGATTTTGTGATCTTC 58.744 41.667 0.00 0.00 0.00 2.87
6981 8480 6.207810 ACTTTCTTTTTGGTGTGTGTTAGACA 59.792 34.615 0.00 0.00 0.00 3.41
7129 8779 3.701542 GGGAAGGAAAGCCTGGAAATAAG 59.298 47.826 0.00 0.00 46.28 1.73
7182 8832 3.569701 TGCCTGGAAATTTTGACTGTCTC 59.430 43.478 9.51 0.00 0.00 3.36
7183 8833 3.365364 GCCTGGAAATTTTGACTGTCTCG 60.365 47.826 9.51 0.00 0.00 4.04
7473 9172 1.270358 GCACGAGGGGATATCCAGAAC 60.270 57.143 23.27 10.02 37.91 3.01
7477 9176 2.613977 CGAGGGGATATCCAGAACATGC 60.614 54.545 23.27 3.08 37.91 4.06
7492 9191 0.309922 CATGCCATGATTCGAGTGCC 59.690 55.000 0.00 0.00 0.00 5.01
7503 9202 1.442769 TCGAGTGCCTTTCTCATTGC 58.557 50.000 0.00 0.00 32.79 3.56
7504 9203 1.002430 TCGAGTGCCTTTCTCATTGCT 59.998 47.619 0.00 0.00 32.79 3.91
7541 9242 6.496338 AATTAAAATGTTGTCTCCCGACTC 57.504 37.500 0.00 0.00 40.86 3.36
7542 9243 3.771577 AAAATGTTGTCTCCCGACTCT 57.228 42.857 0.00 0.00 40.86 3.24
7543 9244 2.751166 AATGTTGTCTCCCGACTCTG 57.249 50.000 0.00 0.00 40.86 3.35
7544 9245 0.247736 ATGTTGTCTCCCGACTCTGC 59.752 55.000 0.00 0.00 40.86 4.26
7545 9246 1.112916 TGTTGTCTCCCGACTCTGCA 61.113 55.000 0.00 0.00 40.86 4.41
7546 9247 0.247736 GTTGTCTCCCGACTCTGCAT 59.752 55.000 0.00 0.00 40.86 3.96
7547 9248 0.247460 TTGTCTCCCGACTCTGCATG 59.753 55.000 0.00 0.00 40.86 4.06
7548 9249 0.900182 TGTCTCCCGACTCTGCATGT 60.900 55.000 0.00 0.00 40.86 3.21
7581 9306 1.411651 GGAGGGAGATGTAGGGTGCC 61.412 65.000 0.00 0.00 0.00 5.01
7584 9309 0.623723 GGGAGATGTAGGGTGCCAAA 59.376 55.000 0.00 0.00 0.00 3.28
7630 9355 4.143009 GGCGTTTCTCAAAACAAAGCAAAA 60.143 37.500 2.38 0.00 44.13 2.44
7636 9361 7.903995 TTCTCAAAACAAAGCAAAAGATGTT 57.096 28.000 0.00 0.00 37.59 2.71
7703 9591 0.821711 TTGTTGTTGCGGGGAAGGAG 60.822 55.000 0.00 0.00 0.00 3.69
7714 9602 3.181458 GCGGGGAAGGAGTAAATGTGATA 60.181 47.826 0.00 0.00 0.00 2.15
7723 9611 5.803967 AGGAGTAAATGTGATAAACGACGAC 59.196 40.000 0.00 0.00 0.00 4.34
7724 9612 5.574055 GGAGTAAATGTGATAAACGACGACA 59.426 40.000 0.00 0.00 0.00 4.35
7732 9622 5.188194 GTGATAAACGACGACAATGTATGC 58.812 41.667 0.00 0.00 0.00 3.14
7734 9624 0.996462 AACGACGACAATGTATGCGG 59.004 50.000 0.00 0.00 34.34 5.69
7874 10935 1.097547 AAGATCCAAATCCGCCGCTG 61.098 55.000 0.00 0.00 31.78 5.18
7975 11036 1.337703 GCTGATCACACAACAGGCAAA 59.662 47.619 0.00 0.00 33.00 3.68
7999 11060 0.107017 CGGGTGAGGAATTCCATGCT 60.107 55.000 26.22 5.39 38.89 3.79
8002 11063 2.019984 GGTGAGGAATTCCATGCTGAC 58.980 52.381 26.22 9.66 38.89 3.51
8009 11070 2.520465 ATTCCATGCTGACGCGGACA 62.520 55.000 12.47 9.70 39.65 4.02
8012 11073 2.029288 CATGCTGACGCGGACAGTT 61.029 57.895 26.90 16.98 39.65 3.16
8017 11078 0.450583 CTGACGCGGACAGTTAGCTA 59.549 55.000 21.46 0.00 0.00 3.32
8093 11154 1.093159 GGAGCACAGGAGCATCAAAG 58.907 55.000 0.00 0.00 36.25 2.77
8180 11242 3.599285 GATCCACAACGCCCCGTCA 62.599 63.158 0.00 0.00 39.99 4.35
8211 11273 3.091318 CAAATGATGGAGGAGCGCT 57.909 52.632 11.27 11.27 0.00 5.92
8212 11274 0.661552 CAAATGATGGAGGAGCGCTG 59.338 55.000 18.48 0.00 0.00 5.18
8213 11275 1.099879 AAATGATGGAGGAGCGCTGC 61.100 55.000 22.65 22.65 0.00 5.25
8214 11276 1.980784 AATGATGGAGGAGCGCTGCT 61.981 55.000 32.73 32.73 43.88 4.24
8215 11277 1.117749 ATGATGGAGGAGCGCTGCTA 61.118 55.000 32.31 18.08 39.88 3.49
8216 11278 1.300542 GATGGAGGAGCGCTGCTAC 60.301 63.158 32.31 32.31 39.88 3.58
8217 11279 2.021068 GATGGAGGAGCGCTGCTACA 62.021 60.000 40.82 40.82 46.06 2.74
8218 11280 2.202810 GGAGGAGCGCTGCTACAC 60.203 66.667 33.67 21.61 42.99 2.90
8219 11281 2.573869 GAGGAGCGCTGCTACACA 59.426 61.111 32.31 0.00 42.99 3.72
8220 11282 1.807573 GAGGAGCGCTGCTACACAC 60.808 63.158 32.31 15.17 42.99 3.82
8221 11283 2.048222 GGAGCGCTGCTACACACA 60.048 61.111 22.85 0.00 39.71 3.72
8222 11284 2.383527 GGAGCGCTGCTACACACAC 61.384 63.158 22.85 0.00 39.71 3.82
8223 11285 2.720758 GAGCGCTGCTACACACACG 61.721 63.158 18.48 0.00 39.88 4.49
8224 11286 2.733218 GCGCTGCTACACACACGA 60.733 61.111 0.00 0.00 0.00 4.35
8225 11287 2.094659 GCGCTGCTACACACACGAT 61.095 57.895 0.00 0.00 0.00 3.73
8226 11288 0.800683 GCGCTGCTACACACACGATA 60.801 55.000 0.00 0.00 0.00 2.92
8227 11289 1.191944 CGCTGCTACACACACGATAG 58.808 55.000 0.00 0.00 46.19 2.08
8239 11301 4.738198 CGATAGTGCACAGCCGAT 57.262 55.556 21.04 3.77 0.00 4.18
8240 11302 2.977700 CGATAGTGCACAGCCGATT 58.022 52.632 21.04 0.00 0.00 3.34
8241 11303 0.855349 CGATAGTGCACAGCCGATTC 59.145 55.000 21.04 3.87 0.00 2.52
8242 11304 1.802508 CGATAGTGCACAGCCGATTCA 60.803 52.381 21.04 0.00 0.00 2.57
8243 11305 2.487934 GATAGTGCACAGCCGATTCAT 58.512 47.619 21.04 0.00 0.00 2.57
8244 11306 3.653344 GATAGTGCACAGCCGATTCATA 58.347 45.455 21.04 0.00 0.00 2.15
8245 11307 1.945387 AGTGCACAGCCGATTCATAG 58.055 50.000 21.04 0.00 0.00 2.23
8246 11308 1.482182 AGTGCACAGCCGATTCATAGA 59.518 47.619 21.04 0.00 0.00 1.98
8247 11309 1.594862 GTGCACAGCCGATTCATAGAC 59.405 52.381 13.17 0.00 0.00 2.59
8248 11310 0.855349 GCACAGCCGATTCATAGACG 59.145 55.000 0.00 0.00 0.00 4.18
8249 11311 1.536072 GCACAGCCGATTCATAGACGA 60.536 52.381 0.00 0.00 0.00 4.20
8250 11312 2.864097 GCACAGCCGATTCATAGACGAT 60.864 50.000 0.00 0.00 0.00 3.73
8251 11313 2.983136 CACAGCCGATTCATAGACGATC 59.017 50.000 0.00 0.00 0.00 3.69
8252 11314 2.029828 ACAGCCGATTCATAGACGATCC 60.030 50.000 0.00 0.00 0.00 3.36
8253 11315 2.230025 CAGCCGATTCATAGACGATCCT 59.770 50.000 0.00 0.00 0.00 3.24
8254 11316 3.440522 CAGCCGATTCATAGACGATCCTA 59.559 47.826 0.00 0.00 0.00 2.94
8255 11317 4.097135 CAGCCGATTCATAGACGATCCTAT 59.903 45.833 0.00 0.00 0.00 2.57
8256 11318 4.707448 AGCCGATTCATAGACGATCCTATT 59.293 41.667 0.00 0.00 0.00 1.73
8257 11319 4.800993 GCCGATTCATAGACGATCCTATTG 59.199 45.833 0.00 0.00 0.00 1.90
8258 11320 5.393135 GCCGATTCATAGACGATCCTATTGA 60.393 44.000 0.00 0.00 0.00 2.57
8259 11321 6.681616 GCCGATTCATAGACGATCCTATTGAT 60.682 42.308 0.00 0.00 36.01 2.57
8260 11322 6.915300 CCGATTCATAGACGATCCTATTGATC 59.085 42.308 0.00 0.00 45.46 2.92
8261 11323 7.201776 CCGATTCATAGACGATCCTATTGATCT 60.202 40.741 0.00 0.00 46.52 2.75
8262 11324 7.643371 CGATTCATAGACGATCCTATTGATCTG 59.357 40.741 0.00 0.00 46.52 2.90
8263 11325 8.586879 ATTCATAGACGATCCTATTGATCTGA 57.413 34.615 0.00 0.00 46.52 3.27
8264 11326 7.384439 TCATAGACGATCCTATTGATCTGAC 57.616 40.000 0.00 0.00 46.52 3.51
8265 11327 6.375736 TCATAGACGATCCTATTGATCTGACC 59.624 42.308 0.00 0.00 46.52 4.02
8266 11328 4.474394 AGACGATCCTATTGATCTGACCA 58.526 43.478 0.00 0.00 46.52 4.02
8267 11329 5.083122 AGACGATCCTATTGATCTGACCAT 58.917 41.667 0.00 0.00 46.52 3.55
8268 11330 6.249192 AGACGATCCTATTGATCTGACCATA 58.751 40.000 0.00 0.00 46.52 2.74
8269 11331 6.151985 AGACGATCCTATTGATCTGACCATAC 59.848 42.308 0.00 0.00 46.52 2.39
8270 11332 5.775195 ACGATCCTATTGATCTGACCATACA 59.225 40.000 0.00 0.00 46.52 2.29
8271 11333 6.438741 ACGATCCTATTGATCTGACCATACAT 59.561 38.462 0.00 0.00 46.52 2.29
8272 11334 6.755607 CGATCCTATTGATCTGACCATACATG 59.244 42.308 0.00 0.00 46.52 3.21
8273 11335 5.798132 TCCTATTGATCTGACCATACATGC 58.202 41.667 0.00 0.00 0.00 4.06
8274 11336 5.307716 TCCTATTGATCTGACCATACATGCA 59.692 40.000 0.00 0.00 0.00 3.96
8275 11337 6.013119 TCCTATTGATCTGACCATACATGCAT 60.013 38.462 0.00 0.00 0.00 3.96
8276 11338 5.959618 ATTGATCTGACCATACATGCATG 57.040 39.130 25.09 25.09 0.00 4.06
8277 11339 4.426736 TGATCTGACCATACATGCATGT 57.573 40.909 33.20 33.20 44.48 3.21
8278 11340 4.131596 TGATCTGACCATACATGCATGTG 58.868 43.478 36.72 24.53 41.89 3.21
8279 11341 3.910568 TCTGACCATACATGCATGTGA 57.089 42.857 36.72 22.66 41.89 3.58
8280 11342 4.426736 TCTGACCATACATGCATGTGAT 57.573 40.909 36.72 23.63 41.89 3.06
8281 11343 5.549742 TCTGACCATACATGCATGTGATA 57.450 39.130 36.72 21.25 41.89 2.15
8282 11344 5.927819 TCTGACCATACATGCATGTGATAA 58.072 37.500 36.72 20.89 41.89 1.75
8283 11345 6.355747 TCTGACCATACATGCATGTGATAAA 58.644 36.000 36.72 20.52 41.89 1.40
8284 11346 6.827762 TCTGACCATACATGCATGTGATAAAA 59.172 34.615 36.72 19.81 41.89 1.52
8285 11347 7.503230 TCTGACCATACATGCATGTGATAAAAT 59.497 33.333 36.72 21.09 41.89 1.82
8286 11348 7.427214 TGACCATACATGCATGTGATAAAATG 58.573 34.615 36.72 28.85 41.89 2.32
8287 11349 7.284944 TGACCATACATGCATGTGATAAAATGA 59.715 33.333 36.72 17.69 41.89 2.57
8288 11350 8.009622 ACCATACATGCATGTGATAAAATGAA 57.990 30.769 36.72 16.98 41.89 2.57
8289 11351 8.139350 ACCATACATGCATGTGATAAAATGAAG 58.861 33.333 36.72 21.44 41.89 3.02
8290 11352 7.115805 CCATACATGCATGTGATAAAATGAAGC 59.884 37.037 36.72 0.00 41.89 3.86
8291 11353 5.968254 ACATGCATGTGATAAAATGAAGCA 58.032 33.333 30.92 0.00 40.03 3.91
8292 11354 5.808540 ACATGCATGTGATAAAATGAAGCAC 59.191 36.000 30.92 0.00 40.03 4.40
8293 11355 5.388408 TGCATGTGATAAAATGAAGCACA 57.612 34.783 0.00 0.00 42.79 4.57
8295 11357 6.037726 TGCATGTGATAAAATGAAGCACATC 58.962 36.000 4.15 1.88 45.38 3.06
8296 11358 5.461078 GCATGTGATAAAATGAAGCACATCC 59.539 40.000 4.15 0.00 45.38 3.51
8297 11359 5.233957 TGTGATAAAATGAAGCACATCCG 57.766 39.130 0.00 0.00 38.38 4.18
8298 11360 4.037690 GTGATAAAATGAAGCACATCCGC 58.962 43.478 0.00 0.00 38.38 5.54
8299 11361 3.947196 TGATAAAATGAAGCACATCCGCT 59.053 39.130 0.00 0.00 46.67 5.52
8300 11362 2.642139 AAAATGAAGCACATCCGCTG 57.358 45.000 0.00 0.00 42.89 5.18
8301 11363 0.813184 AAATGAAGCACATCCGCTGG 59.187 50.000 0.00 0.00 42.89 4.85
8302 11364 0.035152 AATGAAGCACATCCGCTGGA 60.035 50.000 0.00 0.00 42.89 3.86
8303 11365 0.182061 ATGAAGCACATCCGCTGGAT 59.818 50.000 4.51 4.51 44.21 3.41
8310 11372 3.572397 ATCCGCTGGATGGAGCAT 58.428 55.556 8.94 0.00 41.43 3.79
8311 11373 1.374190 ATCCGCTGGATGGAGCATC 59.626 57.895 8.94 0.00 41.43 3.91
8312 11374 2.446142 ATCCGCTGGATGGAGCATCG 62.446 60.000 8.94 0.00 41.43 3.84
8313 11375 2.107750 CGCTGGATGGAGCATCGT 59.892 61.111 0.00 0.00 41.35 3.73
8314 11376 1.953138 CGCTGGATGGAGCATCGTC 60.953 63.158 0.00 0.00 41.35 4.20
8315 11377 1.596477 GCTGGATGGAGCATCGTCC 60.596 63.158 9.76 9.76 41.35 4.79
8322 11384 2.245159 TGGAGCATCGTCCATTGATC 57.755 50.000 0.00 0.00 41.99 2.92
8323 11385 1.143305 GGAGCATCGTCCATTGATCG 58.857 55.000 0.00 0.00 36.51 3.69
8324 11386 1.143305 GAGCATCGTCCATTGATCGG 58.857 55.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.176910 ACCCAAAAGGGTTTGCAACG 59.823 50.000 0.00 0.00 42.44 4.10
10 11 0.616111 TGTGTTGCACCCAAAAGGGT 60.616 50.000 0.00 0.00 43.99 4.34
13 14 1.411977 TCCATGTGTTGCACCCAAAAG 59.588 47.619 0.00 0.00 32.73 2.27
17 18 2.593925 TATTCCATGTGTTGCACCCA 57.406 45.000 0.00 0.00 32.73 4.51
19 20 4.454728 ACAATATTCCATGTGTTGCACC 57.545 40.909 0.00 0.00 32.73 5.01
21 22 7.040494 CCATTTACAATATTCCATGTGTTGCA 58.960 34.615 0.00 0.00 0.00 4.08
35 36 7.032580 CGAATTGCTTCCAACCATTTACAATA 58.967 34.615 0.00 0.00 32.95 1.90
37 38 5.010112 TCGAATTGCTTCCAACCATTTACAA 59.990 36.000 0.00 0.00 32.95 2.41
74 75 1.686052 GGTGCTTTGGAACATGAACCA 59.314 47.619 0.00 5.57 39.59 3.67
75 76 1.000843 GGGTGCTTTGGAACATGAACC 59.999 52.381 0.00 2.62 39.24 3.62
76 77 1.963515 AGGGTGCTTTGGAACATGAAC 59.036 47.619 0.00 0.00 39.30 3.18
85 86 0.598065 GTTGTGCTAGGGTGCTTTGG 59.402 55.000 0.00 0.00 0.00 3.28
123 124 3.506067 TCTGATCTCTAGTCACGTGCAAA 59.494 43.478 11.67 0.00 0.00 3.68
135 136 4.035324 GTCATTCGAACCGTCTGATCTCTA 59.965 45.833 0.00 0.00 0.00 2.43
136 137 3.017442 TCATTCGAACCGTCTGATCTCT 58.983 45.455 0.00 0.00 0.00 3.10
144 145 1.144969 TTGCAGTCATTCGAACCGTC 58.855 50.000 0.00 0.00 0.00 4.79
160 161 2.489329 ACATGCACCTGAACTGTATTGC 59.511 45.455 0.00 0.00 0.00 3.56
164 165 1.879380 GCAACATGCACCTGAACTGTA 59.121 47.619 0.00 0.00 44.26 2.74
166 167 3.484524 GCAACATGCACCTGAACTG 57.515 52.632 0.00 0.00 44.26 3.16
200 201 1.264288 CTTTGCAAGAAGGGTCGTGTC 59.736 52.381 0.00 0.00 35.84 3.67
231 232 0.323087 TGAATCGTCTGGTCTCCCGA 60.323 55.000 0.00 0.00 0.00 5.14
239 240 2.411547 GCAGTCGTTTTGAATCGTCTGG 60.412 50.000 16.87 5.67 41.00 3.86
244 245 2.713976 GTGTTGCAGTCGTTTTGAATCG 59.286 45.455 0.00 0.00 0.00 3.34
253 254 0.461339 AGAAACCGTGTTGCAGTCGT 60.461 50.000 0.00 0.00 0.00 4.34
254 255 0.042188 CAGAAACCGTGTTGCAGTCG 60.042 55.000 0.00 0.00 0.00 4.18
255 256 1.014352 ACAGAAACCGTGTTGCAGTC 58.986 50.000 0.00 0.00 0.00 3.51
256 257 1.132262 CAACAGAAACCGTGTTGCAGT 59.868 47.619 3.22 0.00 46.03 4.40
271 272 1.871772 CGAGAGGGCTTTGCAACAG 59.128 57.895 0.00 1.22 0.00 3.16
285 286 1.872952 CAAGGATTGTGTTGTGCGAGA 59.127 47.619 0.00 0.00 42.34 4.04
298 299 5.343307 ACACAGCTTTTGAAACAAGGATT 57.657 34.783 0.00 0.00 0.00 3.01
299 300 6.265196 TCATACACAGCTTTTGAAACAAGGAT 59.735 34.615 0.00 0.00 0.00 3.24
308 309 4.299586 TCCCATCATACACAGCTTTTGA 57.700 40.909 0.00 0.00 0.00 2.69
346 530 1.293924 GCACGAGCTATGATGCAGTT 58.706 50.000 0.00 0.00 38.00 3.16
362 546 1.584495 CTAGGGGTTTTTGCGGCAC 59.416 57.895 0.05 0.00 0.00 5.01
366 550 1.067821 TGTTTGCTAGGGGTTTTTGCG 59.932 47.619 0.00 0.00 0.00 4.85
372 556 1.203013 GGACCTTGTTTGCTAGGGGTT 60.203 52.381 0.00 0.00 41.06 4.11
373 557 0.404426 GGACCTTGTTTGCTAGGGGT 59.596 55.000 0.00 0.00 41.06 4.95
415 599 1.525619 GAAAACAGTTCTCCCGTCGTG 59.474 52.381 0.00 0.00 0.00 4.35
416 600 1.411612 AGAAAACAGTTCTCCCGTCGT 59.588 47.619 0.00 0.00 0.00 4.34
422 606 1.192534 CGCACGAGAAAACAGTTCTCC 59.807 52.381 9.83 0.00 41.31 3.71
437 621 0.095245 CAGTTGTTAGATGGCGCACG 59.905 55.000 10.83 0.00 0.00 5.34
469 653 1.202639 CCGGGTGATGATTCGATTGGA 60.203 52.381 0.00 0.00 0.00 3.53
497 681 5.222192 TGGGATATGAAAAGGCAGATGCTAT 60.222 40.000 4.59 0.00 41.70 2.97
505 689 6.371595 AAAACATTGGGATATGAAAAGGCA 57.628 33.333 0.00 0.00 0.00 4.75
534 718 7.495135 AACATTGGGATGTGAAAATTGTTTC 57.505 32.000 0.00 0.00 45.58 2.78
535 719 7.878547 AAACATTGGGATGTGAAAATTGTTT 57.121 28.000 0.00 0.00 45.58 2.83
536 720 7.878547 AAAACATTGGGATGTGAAAATTGTT 57.121 28.000 0.00 0.00 45.58 2.83
537 721 7.555554 TCAAAAACATTGGGATGTGAAAATTGT 59.444 29.630 0.00 0.00 45.58 2.71
538 722 7.928103 TCAAAAACATTGGGATGTGAAAATTG 58.072 30.769 0.00 0.00 45.58 2.32
539 723 8.694581 ATCAAAAACATTGGGATGTGAAAATT 57.305 26.923 0.00 0.00 45.58 1.82
540 724 8.694581 AATCAAAAACATTGGGATGTGAAAAT 57.305 26.923 0.00 0.00 45.58 1.82
541 725 7.228308 GGAATCAAAAACATTGGGATGTGAAAA 59.772 33.333 0.00 0.00 45.58 2.29
542 726 6.709846 GGAATCAAAAACATTGGGATGTGAAA 59.290 34.615 0.00 0.00 45.58 2.69
543 727 6.043012 AGGAATCAAAAACATTGGGATGTGAA 59.957 34.615 0.00 0.00 45.58 3.18
544 728 5.543405 AGGAATCAAAAACATTGGGATGTGA 59.457 36.000 0.00 0.00 45.58 3.58
545 729 5.797051 AGGAATCAAAAACATTGGGATGTG 58.203 37.500 0.00 0.00 45.58 3.21
546 730 6.043012 TGAAGGAATCAAAAACATTGGGATGT 59.957 34.615 0.00 0.00 40.78 3.06
547 731 6.465948 TGAAGGAATCAAAAACATTGGGATG 58.534 36.000 0.00 0.00 35.72 3.51
548 732 6.684897 TGAAGGAATCAAAAACATTGGGAT 57.315 33.333 0.00 0.00 34.30 3.85
549 733 6.684897 ATGAAGGAATCAAAAACATTGGGA 57.315 33.333 0.00 0.00 42.54 4.37
550 734 6.935771 TGAATGAAGGAATCAAAAACATTGGG 59.064 34.615 0.00 0.00 42.54 4.12
551 735 7.966246 TGAATGAAGGAATCAAAAACATTGG 57.034 32.000 0.00 0.00 42.54 3.16
553 737 9.781633 TGATTGAATGAAGGAATCAAAAACATT 57.218 25.926 0.00 0.00 42.54 2.71
554 738 9.781633 TTGATTGAATGAAGGAATCAAAAACAT 57.218 25.926 0.00 0.00 41.09 2.71
555 739 9.610705 TTTGATTGAATGAAGGAATCAAAAACA 57.389 25.926 13.86 0.00 45.94 2.83
560 744 9.701098 CTTCTTTTGATTGAATGAAGGAATCAA 57.299 29.630 0.00 0.00 42.54 2.57
561 745 7.816031 GCTTCTTTTGATTGAATGAAGGAATCA 59.184 33.333 12.29 0.00 43.67 2.57
562 746 7.277319 GGCTTCTTTTGATTGAATGAAGGAATC 59.723 37.037 12.29 0.00 39.39 2.52
563 747 7.038516 AGGCTTCTTTTGATTGAATGAAGGAAT 60.039 33.333 12.29 0.00 39.39 3.01
564 748 6.268387 AGGCTTCTTTTGATTGAATGAAGGAA 59.732 34.615 12.29 1.69 39.39 3.36
565 749 5.776716 AGGCTTCTTTTGATTGAATGAAGGA 59.223 36.000 12.29 0.00 39.39 3.36
566 750 6.034161 AGGCTTCTTTTGATTGAATGAAGG 57.966 37.500 12.29 0.00 39.39 3.46
567 751 6.589139 GGAAGGCTTCTTTTGATTGAATGAAG 59.411 38.462 25.25 8.18 40.75 3.02
568 752 6.268387 AGGAAGGCTTCTTTTGATTGAATGAA 59.732 34.615 25.25 0.00 0.00 2.57
569 753 5.776716 AGGAAGGCTTCTTTTGATTGAATGA 59.223 36.000 25.25 0.00 0.00 2.57
570 754 6.034161 AGGAAGGCTTCTTTTGATTGAATG 57.966 37.500 25.25 0.00 0.00 2.67
571 755 6.015282 AGAGGAAGGCTTCTTTTGATTGAAT 58.985 36.000 25.25 0.00 0.00 2.57
601 789 7.691993 AGTAAGGCTTCTTTTATATCCCTCA 57.308 36.000 1.30 0.00 32.23 3.86
602 790 8.982091 AAAGTAAGGCTTCTTTTATATCCCTC 57.018 34.615 1.30 0.00 36.17 4.30
603 791 9.769677 AAAAAGTAAGGCTTCTTTTATATCCCT 57.230 29.630 24.42 12.94 41.17 4.20
628 816 8.664669 AAGGCTTCTTTTATATCCCTCAAAAA 57.335 30.769 0.00 0.00 0.00 1.94
629 817 9.185680 GTAAGGCTTCTTTTATATCCCTCAAAA 57.814 33.333 1.30 0.00 32.23 2.44
630 818 8.557450 AGTAAGGCTTCTTTTATATCCCTCAAA 58.443 33.333 1.30 0.00 32.23 2.69
631 819 8.102484 AGTAAGGCTTCTTTTATATCCCTCAA 57.898 34.615 1.30 0.00 32.23 3.02
632 820 7.691993 AGTAAGGCTTCTTTTATATCCCTCA 57.308 36.000 1.30 0.00 32.23 3.86
633 821 9.713713 CTAAGTAAGGCTTCTTTTATATCCCTC 57.286 37.037 1.30 0.00 38.57 4.30
634 822 9.448587 TCTAAGTAAGGCTTCTTTTATATCCCT 57.551 33.333 1.30 0.00 38.57 4.20
635 823 9.491675 GTCTAAGTAAGGCTTCTTTTATATCCC 57.508 37.037 1.30 0.00 38.57 3.85
639 827 9.832445 CCATGTCTAAGTAAGGCTTCTTTTATA 57.168 33.333 1.30 0.00 38.57 0.98
640 828 7.283354 GCCATGTCTAAGTAAGGCTTCTTTTAT 59.717 37.037 1.30 0.00 39.02 1.40
641 829 6.598064 GCCATGTCTAAGTAAGGCTTCTTTTA 59.402 38.462 1.30 0.58 39.02 1.52
642 830 5.416013 GCCATGTCTAAGTAAGGCTTCTTTT 59.584 40.000 1.30 0.00 39.02 2.27
643 831 4.944317 GCCATGTCTAAGTAAGGCTTCTTT 59.056 41.667 1.30 1.98 39.02 2.52
644 832 4.518249 GCCATGTCTAAGTAAGGCTTCTT 58.482 43.478 1.30 9.84 39.02 2.52
645 833 3.118223 GGCCATGTCTAAGTAAGGCTTCT 60.118 47.826 1.30 0.00 41.71 2.85
646 834 3.206964 GGCCATGTCTAAGTAAGGCTTC 58.793 50.000 1.30 0.00 41.71 3.86
647 835 2.092375 GGGCCATGTCTAAGTAAGGCTT 60.092 50.000 4.39 4.58 41.71 4.35
648 836 1.490910 GGGCCATGTCTAAGTAAGGCT 59.509 52.381 4.39 0.00 41.71 4.58
649 837 1.490910 AGGGCCATGTCTAAGTAAGGC 59.509 52.381 6.18 0.00 41.29 4.35
650 838 2.104963 GGAGGGCCATGTCTAAGTAAGG 59.895 54.545 6.18 0.00 0.00 2.69
651 839 3.041946 AGGAGGGCCATGTCTAAGTAAG 58.958 50.000 6.18 0.00 36.29 2.34
652 840 2.771943 CAGGAGGGCCATGTCTAAGTAA 59.228 50.000 6.18 0.00 36.29 2.24
653 841 2.398588 CAGGAGGGCCATGTCTAAGTA 58.601 52.381 6.18 0.00 36.29 2.24
691 883 4.169696 TTCGGGTATGCTGGGCCG 62.170 66.667 0.00 0.00 0.00 6.13
721 937 2.446036 GGGGGATGAGGCGGTAGT 60.446 66.667 0.00 0.00 0.00 2.73
769 986 0.757935 TACTAGGGTTAGCTGGCCGG 60.758 60.000 7.41 7.41 0.00 6.13
770 987 0.674534 CTACTAGGGTTAGCTGGCCG 59.325 60.000 0.00 0.00 0.00 6.13
771 988 0.393448 GCTACTAGGGTTAGCTGGCC 59.607 60.000 0.00 0.00 34.27 5.36
772 989 0.393448 GGCTACTAGGGTTAGCTGGC 59.607 60.000 9.87 0.00 37.05 4.85
773 990 0.674534 CGGCTACTAGGGTTAGCTGG 59.325 60.000 10.48 1.73 39.01 4.85
776 993 1.366734 GGCGGCTACTAGGGTTAGC 59.633 63.158 0.00 2.90 36.19 3.09
777 994 1.658673 CGGCGGCTACTAGGGTTAG 59.341 63.158 7.61 0.00 0.00 2.34
778 995 2.492773 GCGGCGGCTACTAGGGTTA 61.493 63.158 9.78 0.00 35.83 2.85
779 996 3.846430 GCGGCGGCTACTAGGGTT 61.846 66.667 9.78 0.00 35.83 4.11
811 1028 0.108041 TTTCAGTTCGGGGGTATCGC 60.108 55.000 0.00 0.00 0.00 4.58
812 1029 1.206371 AGTTTCAGTTCGGGGGTATCG 59.794 52.381 0.00 0.00 0.00 2.92
813 1030 2.737679 CGAGTTTCAGTTCGGGGGTATC 60.738 54.545 0.00 0.00 33.39 2.24
814 1031 1.206371 CGAGTTTCAGTTCGGGGGTAT 59.794 52.381 0.00 0.00 33.39 2.73
815 1032 0.604578 CGAGTTTCAGTTCGGGGGTA 59.395 55.000 0.00 0.00 33.39 3.69
821 1038 1.773496 GTCGCCGAGTTTCAGTTCG 59.227 57.895 0.00 0.00 36.62 3.95
823 1040 1.663702 CCGTCGCCGAGTTTCAGTT 60.664 57.895 0.00 0.00 35.63 3.16
908 1125 0.110295 GGGGTGCCAAAATTTTGCCT 59.890 50.000 22.90 0.00 36.86 4.75
911 1128 1.507562 GTCGGGGTGCCAAAATTTTG 58.492 50.000 21.65 21.65 37.90 2.44
1188 1409 4.838486 GAGGACGAGGACAGCGCG 62.838 72.222 0.00 0.00 0.00 6.86
1427 1654 5.798125 TCTATCTGAAGGCAGGTAATGAG 57.202 43.478 0.00 0.00 42.53 2.90
1455 1682 3.785887 TCTAGCCCACCAATTTACCAGAT 59.214 43.478 0.00 0.00 0.00 2.90
1457 1684 3.644966 TCTAGCCCACCAATTTACCAG 57.355 47.619 0.00 0.00 0.00 4.00
1463 1690 1.607225 TCCCATCTAGCCCACCAATT 58.393 50.000 0.00 0.00 0.00 2.32
1478 1706 3.572682 CGTACCAATAGCTCAGTATCCCA 59.427 47.826 0.00 0.00 0.00 4.37
1523 1755 1.227438 ACGACAAACAGACCCCGTG 60.227 57.895 0.00 0.00 0.00 4.94
1524 1756 1.227438 CACGACAAACAGACCCCGT 60.227 57.895 0.00 0.00 0.00 5.28
1525 1757 1.959226 CCACGACAAACAGACCCCG 60.959 63.158 0.00 0.00 0.00 5.73
1548 1780 7.597386 AGCAGAAAAATCATCTCAACTAAACC 58.403 34.615 0.00 0.00 0.00 3.27
1608 1848 4.453136 GCAAAACCTAGTAAATCCGACACA 59.547 41.667 0.00 0.00 0.00 3.72
1624 1864 6.016610 TCTGTGTGGTTATAAGAAGCAAAACC 60.017 38.462 0.00 0.00 40.03 3.27
1658 1898 4.515567 GCTATCCTAATGTAACCAACAGGC 59.484 45.833 0.00 0.00 42.70 4.85
1702 1943 3.940209 TGAATTCCTGGACAATGCAAC 57.060 42.857 2.27 0.00 0.00 4.17
1730 1971 4.209307 GGAAACCCCTTTTGTTCAACAA 57.791 40.909 0.00 0.00 36.11 2.83
1758 2001 6.183360 CGTTGCCCCGTTTTAATGAAAATTAG 60.183 38.462 0.00 0.00 36.92 1.73
1760 2003 4.449405 CGTTGCCCCGTTTTAATGAAAATT 59.551 37.500 0.00 0.00 36.92 1.82
1770 2013 2.725641 GCTTCGTTGCCCCGTTTT 59.274 55.556 0.00 0.00 0.00 2.43
1782 2025 3.963383 ACAGTGTAGTTTTTGGCTTCG 57.037 42.857 0.00 0.00 0.00 3.79
1804 2047 4.827087 ATGAGCCCGAGTGCTGCG 62.827 66.667 0.00 0.00 42.95 5.18
1821 2064 2.158682 TGGCTCAGTAACTTTGGCTTGA 60.159 45.455 0.00 0.00 0.00 3.02
1822 2065 2.227388 CTGGCTCAGTAACTTTGGCTTG 59.773 50.000 0.00 0.00 0.00 4.01
1823 2066 2.106511 TCTGGCTCAGTAACTTTGGCTT 59.893 45.455 2.68 0.00 32.61 4.35
1831 2074 2.338500 CGGTTTCTCTGGCTCAGTAAC 58.662 52.381 2.68 5.91 32.61 2.50
1836 2079 0.884704 GTTGCGGTTTCTCTGGCTCA 60.885 55.000 0.00 0.00 0.00 4.26
1837 2080 1.578206 GGTTGCGGTTTCTCTGGCTC 61.578 60.000 0.00 0.00 0.00 4.70
1838 2081 1.600916 GGTTGCGGTTTCTCTGGCT 60.601 57.895 0.00 0.00 0.00 4.75
1842 2085 2.434774 GGGGGTTGCGGTTTCTCT 59.565 61.111 0.00 0.00 0.00 3.10
1843 2086 2.114411 TGGGGGTTGCGGTTTCTC 59.886 61.111 0.00 0.00 0.00 2.87
1844 2087 2.203437 GTGGGGGTTGCGGTTTCT 60.203 61.111 0.00 0.00 0.00 2.52
1845 2088 2.519780 TGTGGGGGTTGCGGTTTC 60.520 61.111 0.00 0.00 0.00 2.78
1846 2089 2.835895 GTGTGGGGGTTGCGGTTT 60.836 61.111 0.00 0.00 0.00 3.27
1847 2090 3.444818 ATGTGTGGGGGTTGCGGTT 62.445 57.895 0.00 0.00 0.00 4.44
1848 2091 3.897122 ATGTGTGGGGGTTGCGGT 61.897 61.111 0.00 0.00 0.00 5.68
1849 2092 3.372730 CATGTGTGGGGGTTGCGG 61.373 66.667 0.00 0.00 0.00 5.69
1850 2093 4.054825 GCATGTGTGGGGGTTGCG 62.055 66.667 0.00 0.00 0.00 4.85
1851 2094 4.054825 CGCATGTGTGGGGGTTGC 62.055 66.667 0.00 0.00 34.86 4.17
1852 2095 4.054825 GCGCATGTGTGGGGGTTG 62.055 66.667 0.30 0.00 38.61 3.77
1858 2101 3.520862 GATGGGGCGCATGTGTGG 61.521 66.667 22.65 0.00 0.00 4.17
1859 2102 2.751036 TGATGGGGCGCATGTGTG 60.751 61.111 22.65 0.00 0.00 3.82
1860 2103 2.438975 CTGATGGGGCGCATGTGT 60.439 61.111 22.65 0.00 0.00 3.72
1861 2104 3.214123 CCTGATGGGGCGCATGTG 61.214 66.667 22.65 13.16 0.00 3.21
1869 2112 0.682209 CCTTTCACAGCCTGATGGGG 60.682 60.000 0.00 0.00 35.12 4.96
1870 2113 0.329261 TCCTTTCACAGCCTGATGGG 59.671 55.000 0.00 0.00 38.36 4.00
1871 2114 1.681166 CCTCCTTTCACAGCCTGATGG 60.681 57.143 0.00 0.00 0.00 3.51
1872 2115 1.681166 CCCTCCTTTCACAGCCTGATG 60.681 57.143 0.00 0.00 0.00 3.07
1873 2116 0.622665 CCCTCCTTTCACAGCCTGAT 59.377 55.000 0.00 0.00 0.00 2.90
1874 2117 0.473694 TCCCTCCTTTCACAGCCTGA 60.474 55.000 0.00 0.00 0.00 3.86
1875 2118 0.035630 CTCCCTCCTTTCACAGCCTG 60.036 60.000 0.00 0.00 0.00 4.85
1876 2119 1.846712 GCTCCCTCCTTTCACAGCCT 61.847 60.000 0.00 0.00 0.00 4.58
1877 2120 1.377856 GCTCCCTCCTTTCACAGCC 60.378 63.158 0.00 0.00 0.00 4.85
1878 2121 0.250901 TTGCTCCCTCCTTTCACAGC 60.251 55.000 0.00 0.00 0.00 4.40
1879 2122 2.276732 TTTGCTCCCTCCTTTCACAG 57.723 50.000 0.00 0.00 0.00 3.66
1880 2123 2.746279 TTTTGCTCCCTCCTTTCACA 57.254 45.000 0.00 0.00 0.00 3.58
1897 2140 2.360165 CCTGCTCTGCTGTGAACTTTTT 59.640 45.455 0.00 0.00 0.00 1.94
1898 2141 1.952296 CCTGCTCTGCTGTGAACTTTT 59.048 47.619 0.00 0.00 0.00 2.27
1899 2142 1.141657 TCCTGCTCTGCTGTGAACTTT 59.858 47.619 0.00 0.00 0.00 2.66
1900 2143 0.761187 TCCTGCTCTGCTGTGAACTT 59.239 50.000 0.00 0.00 0.00 2.66
1901 2144 0.761187 TTCCTGCTCTGCTGTGAACT 59.239 50.000 0.00 0.00 0.00 3.01
1902 2145 1.155042 CTTCCTGCTCTGCTGTGAAC 58.845 55.000 0.00 0.00 0.00 3.18
1903 2146 0.035881 CCTTCCTGCTCTGCTGTGAA 59.964 55.000 0.00 0.00 0.00 3.18
1904 2147 0.833409 TCCTTCCTGCTCTGCTGTGA 60.833 55.000 0.00 0.00 0.00 3.58
1905 2148 0.035881 TTCCTTCCTGCTCTGCTGTG 59.964 55.000 0.00 0.00 0.00 3.66
1906 2149 0.767375 TTTCCTTCCTGCTCTGCTGT 59.233 50.000 0.00 0.00 0.00 4.40
1907 2150 1.811359 CTTTTCCTTCCTGCTCTGCTG 59.189 52.381 0.00 0.00 0.00 4.41
1908 2151 1.423161 ACTTTTCCTTCCTGCTCTGCT 59.577 47.619 0.00 0.00 0.00 4.24
1909 2152 1.902938 ACTTTTCCTTCCTGCTCTGC 58.097 50.000 0.00 0.00 0.00 4.26
1910 2153 5.066593 ACTTAACTTTTCCTTCCTGCTCTG 58.933 41.667 0.00 0.00 0.00 3.35
1911 2154 5.311844 ACTTAACTTTTCCTTCCTGCTCT 57.688 39.130 0.00 0.00 0.00 4.09
1912 2155 6.149640 CCTAACTTAACTTTTCCTTCCTGCTC 59.850 42.308 0.00 0.00 0.00 4.26
1913 2156 6.004574 CCTAACTTAACTTTTCCTTCCTGCT 58.995 40.000 0.00 0.00 0.00 4.24
1914 2157 5.335740 GCCTAACTTAACTTTTCCTTCCTGC 60.336 44.000 0.00 0.00 0.00 4.85
1915 2158 6.004574 AGCCTAACTTAACTTTTCCTTCCTG 58.995 40.000 0.00 0.00 0.00 3.86
1916 2159 6.202202 AGCCTAACTTAACTTTTCCTTCCT 57.798 37.500 0.00 0.00 0.00 3.36
1917 2160 7.991084 TTAGCCTAACTTAACTTTTCCTTCC 57.009 36.000 0.00 0.00 0.00 3.46
1918 2161 9.064706 AGTTTAGCCTAACTTAACTTTTCCTTC 57.935 33.333 0.00 0.00 43.87 3.46
1919 2162 8.991783 AGTTTAGCCTAACTTAACTTTTCCTT 57.008 30.769 0.00 0.00 43.87 3.36
1930 2173 9.462606 AATGCTGTAATAAGTTTAGCCTAACTT 57.537 29.630 15.54 15.54 46.85 2.66
1931 2174 9.462606 AAATGCTGTAATAAGTTTAGCCTAACT 57.537 29.630 0.00 0.00 39.97 2.24
1936 2179 9.849166 TGTAAAAATGCTGTAATAAGTTTAGCC 57.151 29.630 0.00 0.00 33.60 3.93
1941 2184 9.573133 GCTGATGTAAAAATGCTGTAATAAGTT 57.427 29.630 0.00 0.00 0.00 2.66
1942 2185 8.739039 TGCTGATGTAAAAATGCTGTAATAAGT 58.261 29.630 0.00 0.00 0.00 2.24
1943 2186 9.740239 ATGCTGATGTAAAAATGCTGTAATAAG 57.260 29.630 0.00 0.00 0.00 1.73
1945 2188 9.734620 GAATGCTGATGTAAAAATGCTGTAATA 57.265 29.630 0.00 0.00 0.00 0.98
1946 2189 8.252417 TGAATGCTGATGTAAAAATGCTGTAAT 58.748 29.630 0.00 0.00 0.00 1.89
1947 2190 7.600960 TGAATGCTGATGTAAAAATGCTGTAA 58.399 30.769 0.00 0.00 0.00 2.41
1948 2191 7.155655 TGAATGCTGATGTAAAAATGCTGTA 57.844 32.000 0.00 0.00 0.00 2.74
1949 2192 6.028146 TGAATGCTGATGTAAAAATGCTGT 57.972 33.333 0.00 0.00 0.00 4.40
1950 2193 5.005394 GCTGAATGCTGATGTAAAAATGCTG 59.995 40.000 0.00 0.00 38.95 4.41
1951 2194 5.107133 GCTGAATGCTGATGTAAAAATGCT 58.893 37.500 0.00 0.00 38.95 3.79
1952 2195 5.385396 GCTGAATGCTGATGTAAAAATGC 57.615 39.130 0.00 0.00 38.95 3.56
1968 2211 2.842496 TGAGAGTCCATTCCAGCTGAAT 59.158 45.455 17.39 10.27 44.67 2.57
1969 2212 2.259917 TGAGAGTCCATTCCAGCTGAA 58.740 47.619 17.39 8.19 37.38 3.02
1970 2213 1.942776 TGAGAGTCCATTCCAGCTGA 58.057 50.000 17.39 0.00 0.00 4.26
1971 2214 2.746362 GTTTGAGAGTCCATTCCAGCTG 59.254 50.000 6.78 6.78 0.00 4.24
1972 2215 2.290577 GGTTTGAGAGTCCATTCCAGCT 60.291 50.000 0.00 0.00 0.00 4.24
1973 2216 2.087646 GGTTTGAGAGTCCATTCCAGC 58.912 52.381 0.00 0.00 0.00 4.85
1974 2217 3.423539 TGGTTTGAGAGTCCATTCCAG 57.576 47.619 0.00 0.00 0.00 3.86
1975 2218 3.874383 TTGGTTTGAGAGTCCATTCCA 57.126 42.857 0.00 0.00 0.00 3.53
1976 2219 3.119352 GCATTGGTTTGAGAGTCCATTCC 60.119 47.826 0.00 0.00 0.00 3.01
1977 2220 3.119352 GGCATTGGTTTGAGAGTCCATTC 60.119 47.826 0.00 0.00 0.00 2.67
1978 2221 2.827921 GGCATTGGTTTGAGAGTCCATT 59.172 45.455 0.00 0.00 0.00 3.16
1979 2222 2.042162 AGGCATTGGTTTGAGAGTCCAT 59.958 45.455 0.00 0.00 0.00 3.41
1980 2223 1.425066 AGGCATTGGTTTGAGAGTCCA 59.575 47.619 0.00 0.00 0.00 4.02
1981 2224 2.087646 GAGGCATTGGTTTGAGAGTCC 58.912 52.381 0.00 0.00 0.00 3.85
1982 2225 2.087646 GGAGGCATTGGTTTGAGAGTC 58.912 52.381 0.00 0.00 0.00 3.36
1983 2226 1.611673 CGGAGGCATTGGTTTGAGAGT 60.612 52.381 0.00 0.00 0.00 3.24
1984 2227 1.089920 CGGAGGCATTGGTTTGAGAG 58.910 55.000 0.00 0.00 0.00 3.20
1985 2228 0.960364 GCGGAGGCATTGGTTTGAGA 60.960 55.000 0.00 0.00 39.62 3.27
1986 2229 1.243342 TGCGGAGGCATTGGTTTGAG 61.243 55.000 0.00 0.00 46.21 3.02
1987 2230 1.228398 TGCGGAGGCATTGGTTTGA 60.228 52.632 0.00 0.00 46.21 2.69
1988 2231 3.364442 TGCGGAGGCATTGGTTTG 58.636 55.556 0.00 0.00 46.21 2.93
1997 2240 1.355066 CGAGAAGAAAGTGCGGAGGC 61.355 60.000 0.00 0.00 40.52 4.70
1998 2241 1.355066 GCGAGAAGAAAGTGCGGAGG 61.355 60.000 0.00 0.00 0.00 4.30
2002 2245 1.667830 TGGGCGAGAAGAAAGTGCG 60.668 57.895 0.00 0.00 0.00 5.34
2011 2254 0.984230 AAGAATCTGGTGGGCGAGAA 59.016 50.000 0.00 0.00 33.27 2.87
2020 2263 2.172293 GCCTGGAGATGAAGAATCTGGT 59.828 50.000 0.00 0.00 46.12 4.00
2138 2381 3.064079 GCGTGTGAGTGCCATGATA 57.936 52.632 0.00 0.00 0.00 2.15
2156 2399 4.772100 ACAAGTATCCAAAATCTGTTGGGG 59.228 41.667 4.22 0.00 46.89 4.96
2171 2414 3.514309 AGGGTACAGTGTGGACAAGTATC 59.486 47.826 5.88 0.00 31.17 2.24
2186 2429 7.148154 CGAAATGATATTTGTTTCCAGGGTACA 60.148 37.037 0.00 0.00 0.00 2.90
2216 2459 4.469586 TGCTGTTATCTGGACTTATGGACA 59.530 41.667 0.00 0.00 0.00 4.02
2240 2484 3.502123 TGGGGTTAATATAGCCTGTGC 57.498 47.619 0.00 0.00 35.97 4.57
2254 2498 7.358263 TGGTGTATTGACAATAATATGGGGTT 58.642 34.615 9.47 0.00 37.31 4.11
2272 2520 6.191657 TGAATTGGCTGATCTATGGTGTAT 57.808 37.500 0.00 0.00 0.00 2.29
2343 2591 5.439721 TGAATGAATTCCTGGACGATGATT 58.560 37.500 2.27 0.00 35.97 2.57
2376 2624 4.628074 GCTTCAGCCATTGCATTATCATT 58.372 39.130 0.00 0.00 41.13 2.57
2378 2626 3.720949 GCTTCAGCCATTGCATTATCA 57.279 42.857 0.00 0.00 41.13 2.15
2504 2753 3.648545 ACTTCCTAATGGGGCTGATAGAC 59.351 47.826 0.00 0.00 35.33 2.59
2537 2786 1.078759 CAGACAATCACGGACTCGCC 61.079 60.000 0.00 0.00 40.63 5.54
2627 2876 2.649531 ATCCACTCTCTAGTCCTCCG 57.350 55.000 0.00 0.00 31.97 4.63
3464 3793 0.604578 CCCTTGTGATTTGCCTGTGG 59.395 55.000 0.00 0.00 0.00 4.17
3466 3796 2.514803 GTACCCTTGTGATTTGCCTGT 58.485 47.619 0.00 0.00 0.00 4.00
3592 3922 5.163163 GGGATCCTTTAAATACGTAAGGGGT 60.163 44.000 12.58 0.00 46.39 4.95
3831 4161 3.947868 AGAACAGTACAGCAGCATGAAT 58.052 40.909 0.00 0.00 39.69 2.57
3895 4225 8.877808 TGAGTGAACATATTTGCATAGTAGAG 57.122 34.615 0.00 0.00 0.00 2.43
4053 4384 5.357596 AGTCCGTATTCTCCTACTTTGAGAC 59.642 44.000 0.00 0.00 38.54 3.36
4111 4896 0.108615 CTAGTGAGCTGACCAACCGG 60.109 60.000 0.00 0.00 38.77 5.28
4196 4981 3.573967 CACCAACCATCTAAAGCAACCTT 59.426 43.478 0.00 0.00 0.00 3.50
4232 5025 7.282450 AGGATTTAACGATCTTAACCATTGGAC 59.718 37.037 10.37 0.00 0.00 4.02
4248 5041 9.922305 GAATAATCAGAAGAACAGGATTTAACG 57.078 33.333 0.00 0.00 32.62 3.18
4258 5051 5.245531 ACAAGCCGAATAATCAGAAGAACA 58.754 37.500 0.00 0.00 0.00 3.18
4260 5053 6.092670 CAGAACAAGCCGAATAATCAGAAGAA 59.907 38.462 0.00 0.00 0.00 2.52
4261 5054 5.582269 CAGAACAAGCCGAATAATCAGAAGA 59.418 40.000 0.00 0.00 0.00 2.87
4262 5055 5.582269 TCAGAACAAGCCGAATAATCAGAAG 59.418 40.000 0.00 0.00 0.00 2.85
4267 5060 5.351465 TCAAGTCAGAACAAGCCGAATAATC 59.649 40.000 0.00 0.00 0.00 1.75
4298 5094 6.422333 TGTGGAAAAGGTTGATATGATAGCA 58.578 36.000 0.00 0.00 0.00 3.49
4446 5243 3.406764 CAGCCCAATAGTCCTTGCTATC 58.593 50.000 0.00 0.00 31.80 2.08
4694 5491 3.993081 CAGAGGAAAAGTGCAGTGTCTAG 59.007 47.826 0.00 0.00 0.00 2.43
4695 5492 3.388024 ACAGAGGAAAAGTGCAGTGTCTA 59.612 43.478 0.00 0.00 0.00 2.59
4696 5493 2.171448 ACAGAGGAAAAGTGCAGTGTCT 59.829 45.455 0.00 0.00 0.00 3.41
4697 5494 2.565841 ACAGAGGAAAAGTGCAGTGTC 58.434 47.619 0.00 0.00 0.00 3.67
4698 5495 2.717639 ACAGAGGAAAAGTGCAGTGT 57.282 45.000 0.00 0.00 0.00 3.55
4732 5530 8.442632 TTCAAATATATCCAGAGAAGCAACAG 57.557 34.615 0.00 0.00 0.00 3.16
4895 5693 5.527214 TCATGTTAGTCAGGAAAACACACAG 59.473 40.000 0.00 0.00 36.06 3.66
5074 5882 5.858381 GACCAGCATAATGATTCTAGGTCA 58.142 41.667 0.00 1.98 41.88 4.02
5113 5921 0.104356 TCCCAAGGGTACAAGGTGGA 60.104 55.000 4.80 0.00 36.47 4.02
5115 5923 1.144093 TGTTCCCAAGGGTACAAGGTG 59.856 52.381 14.34 0.00 41.48 4.00
5278 6089 7.860613 ACAAAACAAAATAAACTAAGCATGGC 58.139 30.769 0.00 0.00 0.00 4.40
5393 6205 3.507411 AGAGCACTAGGACACAAGGTAA 58.493 45.455 0.00 0.00 0.00 2.85
5407 6227 5.306419 TGCATTCTAGAATCCATAGAGCACT 59.694 40.000 15.24 0.00 30.10 4.40
5410 6232 5.545588 TGTGCATTCTAGAATCCATAGAGC 58.454 41.667 15.24 13.58 31.17 4.09
5484 6306 7.459234 TCCTCATTCATCATCTGCAGATTTAT 58.541 34.615 26.70 19.05 31.21 1.40
5646 6468 3.051081 AGGTTTAGCTGAGTGAAGCAG 57.949 47.619 0.00 0.00 46.08 4.24
5649 6471 6.483640 ACAAAAGTAGGTTTAGCTGAGTGAAG 59.516 38.462 0.00 0.00 0.00 3.02
5656 6478 6.861065 TCAGAACAAAAGTAGGTTTAGCTG 57.139 37.500 0.00 0.00 0.00 4.24
5715 6537 1.269621 GGATCAATAGGACGACCACGG 60.270 57.143 6.71 0.00 44.46 4.94
5721 6543 2.766263 AGCAGTTGGATCAATAGGACGA 59.234 45.455 0.00 0.00 0.00 4.20
5838 7300 4.628766 TCAGAATCAAAAGCATCAGACTCG 59.371 41.667 0.00 0.00 0.00 4.18
6279 7748 3.498927 AAAATTCTGCCAGCTTCATCG 57.501 42.857 0.00 0.00 0.00 3.84
6300 7769 1.392168 CGCTTAAAATCTTCGTCGCCA 59.608 47.619 0.00 0.00 0.00 5.69
6731 8200 3.578716 TCTCTTCCTTGGTCATCTTTCGT 59.421 43.478 0.00 0.00 0.00 3.85
6732 8201 4.081972 TCTCTCTTCCTTGGTCATCTTTCG 60.082 45.833 0.00 0.00 0.00 3.46
6879 8370 3.554960 GATAGCGTATCTGGAATGGCACA 60.555 47.826 0.00 0.00 35.79 4.57
6897 8389 7.652909 CCAGAAGAGAAAGCTAAGACATGATAG 59.347 40.741 0.00 0.06 0.00 2.08
6933 8431 3.594603 TCAGACAAGGAACGGAAGATC 57.405 47.619 0.00 0.00 0.00 2.75
6935 8433 2.897326 TGATCAGACAAGGAACGGAAGA 59.103 45.455 0.00 0.00 0.00 2.87
6937 8435 2.632996 AGTGATCAGACAAGGAACGGAA 59.367 45.455 0.00 0.00 0.00 4.30
6939 8437 2.751166 AGTGATCAGACAAGGAACGG 57.249 50.000 0.00 0.00 0.00 4.44
6981 8480 0.462759 GCTTATTGCTCGAGCCACCT 60.463 55.000 33.23 17.41 41.18 4.00
7062 8712 1.809547 GCTTTGGTCTTCTTCTCCTGC 59.190 52.381 0.00 0.00 0.00 4.85
7129 8779 1.157585 GAAGAAAACACGAGCCCTCC 58.842 55.000 0.00 0.00 0.00 4.30
7182 8832 7.953158 AAACATATCAGACACAATATCCTCG 57.047 36.000 0.00 0.00 0.00 4.63
7183 8833 9.764363 TGTAAACATATCAGACACAATATCCTC 57.236 33.333 0.00 0.00 0.00 3.71
7246 8911 1.453928 GGCTCCATTCTTTCCCCGG 60.454 63.158 0.00 0.00 0.00 5.73
7248 8913 2.165357 ATTGGCTCCATTCTTTCCCC 57.835 50.000 0.00 0.00 0.00 4.81
7473 9172 0.309922 GGCACTCGAATCATGGCATG 59.690 55.000 21.42 21.42 38.69 4.06
7477 9176 2.611292 GAGAAAGGCACTCGAATCATGG 59.389 50.000 0.00 0.00 38.49 3.66
7503 9202 7.473027 CATTTTAATTAAATGCTGCCAGGAG 57.527 36.000 11.33 0.00 44.69 3.69
7543 9244 0.793861 CACCAAAATGCTGCACATGC 59.206 50.000 3.57 0.00 39.60 4.06
7544 9245 1.001068 TCCACCAAAATGCTGCACATG 59.999 47.619 3.57 4.27 39.60 3.21
7545 9246 1.274167 CTCCACCAAAATGCTGCACAT 59.726 47.619 3.57 0.00 42.30 3.21
7546 9247 0.675083 CTCCACCAAAATGCTGCACA 59.325 50.000 3.57 0.00 0.00 4.57
7547 9248 0.037975 CCTCCACCAAAATGCTGCAC 60.038 55.000 3.57 0.00 0.00 4.57
7548 9249 1.186917 CCCTCCACCAAAATGCTGCA 61.187 55.000 4.13 4.13 0.00 4.41
7592 9317 4.717629 GCCCCTTCGTTTTGCGCC 62.718 66.667 4.18 0.00 41.07 6.53
7602 9327 1.679153 TGTTTTGAGAAACGCCCCTTC 59.321 47.619 0.00 0.00 46.44 3.46
7703 9591 7.231607 ACATTGTCGTCGTTTATCACATTTAC 58.768 34.615 0.00 0.00 0.00 2.01
7714 9602 1.392168 CCGCATACATTGTCGTCGTTT 59.608 47.619 0.00 0.00 0.00 3.60
7723 9611 4.437239 AGTCTCTTTCTCCGCATACATTG 58.563 43.478 0.00 0.00 0.00 2.82
7724 9612 4.744795 AGTCTCTTTCTCCGCATACATT 57.255 40.909 0.00 0.00 0.00 2.71
7776 9666 8.080417 GGGTGAATCAAAAGTTTCCTACTAAAC 58.920 37.037 0.00 0.00 39.22 2.01
7777 9667 7.040961 CGGGTGAATCAAAAGTTTCCTACTAAA 60.041 37.037 0.00 0.00 35.54 1.85
7874 10935 0.737219 GGCAAGATGGAGTGCATGAC 59.263 55.000 0.12 0.00 42.74 3.06
7911 10972 0.673644 GATTCATCGGGTATGGGCCG 60.674 60.000 0.00 0.00 36.15 6.13
7971 11032 2.999739 TTCCTCACCCGACCGTTTGC 63.000 60.000 0.00 0.00 0.00 3.68
7975 11036 1.595357 GAATTCCTCACCCGACCGT 59.405 57.895 0.00 0.00 0.00 4.83
7999 11060 1.065102 GATAGCTAACTGTCCGCGTCA 59.935 52.381 4.92 2.94 0.00 4.35
8002 11063 0.306840 TCGATAGCTAACTGTCCGCG 59.693 55.000 0.00 0.00 30.62 6.46
8060 11121 2.271800 GTGCTCCGCCTATATATGTGC 58.728 52.381 0.00 0.00 0.00 4.57
8080 11141 0.815734 CCTTGGCTTTGATGCTCCTG 59.184 55.000 0.00 0.00 0.00 3.86
8081 11142 0.969409 GCCTTGGCTTTGATGCTCCT 60.969 55.000 4.11 0.00 0.00 3.69
8093 11154 3.512516 GCCTGTGATCGCCTTGGC 61.513 66.667 15.75 15.75 0.00 4.52
8121 11182 5.588648 GGCCTATATATATGCCGCTTTTTGA 59.411 40.000 19.44 0.00 35.01 2.69
8162 11224 2.818274 GACGGGGCGTTGTGGATC 60.818 66.667 0.00 0.00 41.37 3.36
8180 11242 1.079127 CATTTGGTCGTCGGAGCCT 60.079 57.895 0.00 0.00 39.95 4.58
8205 11267 2.720758 CGTGTGTGTAGCAGCGCTC 61.721 63.158 7.13 2.24 40.44 5.03
8206 11268 2.492449 ATCGTGTGTGTAGCAGCGCT 62.492 55.000 2.64 2.64 43.41 5.92
8207 11269 0.800683 TATCGTGTGTGTAGCAGCGC 60.801 55.000 0.00 0.00 0.00 5.92
8208 11270 1.191944 CTATCGTGTGTGTAGCAGCG 58.808 55.000 0.00 0.00 0.00 5.18
8209 11271 1.920574 CACTATCGTGTGTGTAGCAGC 59.079 52.381 0.00 0.00 36.39 5.25
8210 11272 1.920574 GCACTATCGTGTGTGTAGCAG 59.079 52.381 0.00 0.00 43.16 4.24
8211 11273 1.271102 TGCACTATCGTGTGTGTAGCA 59.729 47.619 0.00 0.00 43.16 3.49
8212 11274 1.654105 GTGCACTATCGTGTGTGTAGC 59.346 52.381 10.32 0.00 43.16 3.58
8213 11275 2.917343 CTGTGCACTATCGTGTGTGTAG 59.083 50.000 19.41 0.00 43.16 2.74
8214 11276 2.924880 GCTGTGCACTATCGTGTGTGTA 60.925 50.000 19.41 0.00 43.16 2.90
8215 11277 1.783284 CTGTGCACTATCGTGTGTGT 58.217 50.000 19.41 0.00 43.16 3.72
8216 11278 0.439985 GCTGTGCACTATCGTGTGTG 59.560 55.000 19.41 0.00 43.16 3.82
8217 11279 0.670546 GGCTGTGCACTATCGTGTGT 60.671 55.000 19.41 0.00 43.16 3.72
8218 11280 1.686566 CGGCTGTGCACTATCGTGTG 61.687 60.000 19.41 0.00 43.16 3.82
8219 11281 1.446099 CGGCTGTGCACTATCGTGT 60.446 57.895 19.41 0.00 43.16 4.49
8220 11282 0.528466 ATCGGCTGTGCACTATCGTG 60.528 55.000 19.41 3.33 44.07 4.35
8221 11283 0.175760 AATCGGCTGTGCACTATCGT 59.824 50.000 19.41 6.90 0.00 3.73
8222 11284 0.855349 GAATCGGCTGTGCACTATCG 59.145 55.000 19.41 17.39 0.00 2.92
8223 11285 1.939974 TGAATCGGCTGTGCACTATC 58.060 50.000 19.41 6.70 0.00 2.08
8224 11286 2.627515 ATGAATCGGCTGTGCACTAT 57.372 45.000 19.41 1.10 0.00 2.12
8225 11287 2.693074 TCTATGAATCGGCTGTGCACTA 59.307 45.455 19.41 3.54 0.00 2.74
8226 11288 1.482182 TCTATGAATCGGCTGTGCACT 59.518 47.619 19.41 0.00 0.00 4.40
8227 11289 1.594862 GTCTATGAATCGGCTGTGCAC 59.405 52.381 10.75 10.75 0.00 4.57
8228 11290 1.802508 CGTCTATGAATCGGCTGTGCA 60.803 52.381 0.00 0.00 0.00 4.57
8229 11291 0.855349 CGTCTATGAATCGGCTGTGC 59.145 55.000 0.00 0.00 0.00 4.57
8230 11292 2.492019 TCGTCTATGAATCGGCTGTG 57.508 50.000 0.00 0.00 0.00 3.66
8231 11293 2.029828 GGATCGTCTATGAATCGGCTGT 60.030 50.000 0.00 0.00 0.00 4.40
8232 11294 2.230025 AGGATCGTCTATGAATCGGCTG 59.770 50.000 0.00 0.00 0.00 4.85
8233 11295 2.520069 AGGATCGTCTATGAATCGGCT 58.480 47.619 0.00 0.00 0.00 5.52
8234 11296 4.640789 ATAGGATCGTCTATGAATCGGC 57.359 45.455 0.00 0.00 0.00 5.54
8235 11297 6.196079 TCAATAGGATCGTCTATGAATCGG 57.804 41.667 0.00 0.00 31.01 4.18
8236 11298 7.906611 GATCAATAGGATCGTCTATGAATCG 57.093 40.000 0.00 0.00 42.81 3.34
8249 11311 6.013119 TGCATGTATGGTCAGATCAATAGGAT 60.013 38.462 0.00 0.00 39.53 3.24
8250 11312 5.307716 TGCATGTATGGTCAGATCAATAGGA 59.692 40.000 0.00 0.00 0.00 2.94
8251 11313 5.554070 TGCATGTATGGTCAGATCAATAGG 58.446 41.667 0.00 0.00 0.00 2.57
8252 11314 6.653740 ACATGCATGTATGGTCAGATCAATAG 59.346 38.462 30.50 0.00 39.68 1.73
8253 11315 6.428771 CACATGCATGTATGGTCAGATCAATA 59.571 38.462 30.92 0.00 39.39 1.90
8254 11316 5.240844 CACATGCATGTATGGTCAGATCAAT 59.759 40.000 30.92 0.51 39.39 2.57
8255 11317 4.577283 CACATGCATGTATGGTCAGATCAA 59.423 41.667 30.92 0.00 39.39 2.57
8256 11318 4.131596 CACATGCATGTATGGTCAGATCA 58.868 43.478 30.92 0.00 39.39 2.92
8257 11319 4.383173 TCACATGCATGTATGGTCAGATC 58.617 43.478 30.92 0.00 39.39 2.75
8258 11320 4.426736 TCACATGCATGTATGGTCAGAT 57.573 40.909 30.92 2.47 39.39 2.90
8259 11321 3.910568 TCACATGCATGTATGGTCAGA 57.089 42.857 30.92 19.08 39.39 3.27
8260 11322 6.622833 TTTATCACATGCATGTATGGTCAG 57.377 37.500 30.92 17.12 39.39 3.51
8261 11323 7.284944 TCATTTTATCACATGCATGTATGGTCA 59.715 33.333 30.92 14.89 39.39 4.02
8262 11324 7.650890 TCATTTTATCACATGCATGTATGGTC 58.349 34.615 30.92 0.00 39.39 4.02
8263 11325 7.585579 TCATTTTATCACATGCATGTATGGT 57.414 32.000 30.92 18.78 39.39 3.55
8264 11326 7.115805 GCTTCATTTTATCACATGCATGTATGG 59.884 37.037 30.92 19.25 39.39 2.74
8265 11327 7.650104 TGCTTCATTTTATCACATGCATGTATG 59.350 33.333 30.92 26.39 39.39 2.39
8266 11328 7.650504 GTGCTTCATTTTATCACATGCATGTAT 59.349 33.333 30.92 23.68 39.39 2.29
8267 11329 6.974048 GTGCTTCATTTTATCACATGCATGTA 59.026 34.615 30.92 19.21 39.39 2.29
8268 11330 5.808540 GTGCTTCATTTTATCACATGCATGT 59.191 36.000 26.61 26.61 42.84 3.21
8269 11331 5.808030 TGTGCTTCATTTTATCACATGCATG 59.192 36.000 25.09 25.09 33.33 4.06
8270 11332 5.968254 TGTGCTTCATTTTATCACATGCAT 58.032 33.333 0.00 0.00 33.33 3.96
8271 11333 5.388408 TGTGCTTCATTTTATCACATGCA 57.612 34.783 0.00 0.00 33.33 3.96
8272 11334 5.461078 GGATGTGCTTCATTTTATCACATGC 59.539 40.000 10.39 9.58 45.16 4.06
8273 11335 5.684184 CGGATGTGCTTCATTTTATCACATG 59.316 40.000 10.39 0.00 45.16 3.21
8274 11336 7.852531 AGCGGATGTGCTTCATTTTATCACAT 61.853 38.462 5.94 5.94 44.46 3.21
8275 11337 4.438608 GCGGATGTGCTTCATTTTATCACA 60.439 41.667 0.00 0.00 41.18 3.58
8276 11338 4.037690 GCGGATGTGCTTCATTTTATCAC 58.962 43.478 0.00 0.00 36.83 3.06
8277 11339 3.947196 AGCGGATGTGCTTCATTTTATCA 59.053 39.130 0.00 0.00 44.46 2.15
8278 11340 4.285292 CAGCGGATGTGCTTCATTTTATC 58.715 43.478 0.00 0.00 44.46 1.75
8279 11341 3.067180 CCAGCGGATGTGCTTCATTTTAT 59.933 43.478 0.00 0.00 44.46 1.40
8280 11342 2.423185 CCAGCGGATGTGCTTCATTTTA 59.577 45.455 0.00 0.00 44.46 1.52
8281 11343 1.203052 CCAGCGGATGTGCTTCATTTT 59.797 47.619 0.00 0.00 44.46 1.82
8282 11344 0.813184 CCAGCGGATGTGCTTCATTT 59.187 50.000 0.00 0.00 44.46 2.32
8283 11345 0.035152 TCCAGCGGATGTGCTTCATT 60.035 50.000 0.00 0.00 44.46 2.57
8284 11346 0.182061 ATCCAGCGGATGTGCTTCAT 59.818 50.000 8.94 0.00 44.46 2.57
8285 11347 1.603842 ATCCAGCGGATGTGCTTCA 59.396 52.632 8.94 0.00 44.46 3.02
8286 11348 4.547859 ATCCAGCGGATGTGCTTC 57.452 55.556 8.94 0.00 44.46 3.86
8293 11355 1.374190 GATGCTCCATCCAGCGGAT 59.626 57.895 4.51 4.51 44.21 4.18
8294 11356 2.824546 GATGCTCCATCCAGCGGA 59.175 61.111 0.00 0.00 42.92 5.54
8295 11357 2.664185 CGATGCTCCATCCAGCGG 60.664 66.667 0.05 0.00 42.92 5.52
8296 11358 1.953138 GACGATGCTCCATCCAGCG 60.953 63.158 0.00 0.00 46.36 5.18
8297 11359 1.596477 GGACGATGCTCCATCCAGC 60.596 63.158 0.00 0.00 37.57 4.85
8298 11360 0.395686 ATGGACGATGCTCCATCCAG 59.604 55.000 0.00 0.00 46.54 3.86
8299 11361 2.531672 ATGGACGATGCTCCATCCA 58.468 52.632 0.00 1.53 46.54 3.41
8303 11365 1.538849 CGATCAATGGACGATGCTCCA 60.539 52.381 0.00 0.00 44.72 3.86
8304 11366 1.143305 CGATCAATGGACGATGCTCC 58.857 55.000 0.00 0.00 0.00 4.70
8305 11367 1.143305 CCGATCAATGGACGATGCTC 58.857 55.000 0.00 0.00 0.00 4.26
8306 11368 3.295734 CCGATCAATGGACGATGCT 57.704 52.632 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.