Multiple sequence alignment - TraesCS2A01G480900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G480900 chr2A 100.000 4054 0 0 1 4054 718386195 718382142 0.000000e+00 7487.0
1 TraesCS2A01G480900 chr2A 93.233 532 24 3 2534 3065 1608655 1609174 0.000000e+00 773.0
2 TraesCS2A01G480900 chr2A 94.220 346 18 2 1 345 310062230 310061886 9.980000e-146 527.0
3 TraesCS2A01G480900 chr2A 87.156 109 11 1 3861 3969 718372693 718372588 1.980000e-23 121.0
4 TraesCS2A01G480900 chr2A 94.521 73 4 0 3439 3511 226553711 226553783 3.310000e-21 113.0
5 TraesCS2A01G480900 chr2A 92.537 67 1 3 378 442 460904062 460903998 4.310000e-15 93.5
6 TraesCS2A01G480900 chr2A 91.667 60 4 1 3751 3810 718372770 718372712 9.340000e-12 82.4
7 TraesCS2A01G480900 chr2A 81.609 87 15 1 235 321 39594169 39594084 2.020000e-08 71.3
8 TraesCS2A01G480900 chr2A 100.000 28 0 0 3210 3237 718372827 718372800 7.000000e-03 52.8
9 TraesCS2A01G480900 chr2D 91.823 2727 89 45 550 3239 584258637 584256008 0.000000e+00 3677.0
10 TraesCS2A01G480900 chr2D 82.400 125 10 2 3849 3973 584255130 584255018 9.270000e-17 99.0
11 TraesCS2A01G480900 chr2D 93.750 64 3 1 370 432 643815559 643815496 1.200000e-15 95.3
12 TraesCS2A01G480900 chr2B 90.851 2820 141 62 550 3318 703625114 703622361 0.000000e+00 3670.0
13 TraesCS2A01G480900 chr2B 95.312 64 2 1 370 432 386570377 386570314 2.580000e-17 100.0
14 TraesCS2A01G480900 chr2B 84.615 104 10 4 443 541 703625360 703625258 9.270000e-17 99.0
15 TraesCS2A01G480900 chr3A 89.599 1173 120 2 1884 3055 16631612 16632783 0.000000e+00 1489.0
16 TraesCS2A01G480900 chr3A 75.329 608 94 42 1008 1584 16629885 16630467 1.460000e-59 241.0
17 TraesCS2A01G480900 chr3B 89.344 1173 123 2 1884 3055 26752898 26751727 0.000000e+00 1472.0
18 TraesCS2A01G480900 chr3B 88.832 1173 129 2 1884 3055 14525616 14524445 0.000000e+00 1439.0
19 TraesCS2A01G480900 chr3B 85.000 220 15 11 1008 1209 14526516 14526297 1.480000e-49 207.0
20 TraesCS2A01G480900 chr3B 84.404 218 16 12 1008 1207 26753822 26753605 8.890000e-47 198.0
21 TraesCS2A01G480900 chr3B 93.548 62 3 1 370 430 28647268 28647329 1.550000e-14 91.6
22 TraesCS2A01G480900 chr3D 89.003 1173 127 2 1884 3055 10454963 10456134 0.000000e+00 1450.0
23 TraesCS2A01G480900 chr3D 83.721 215 17 11 1008 1204 10453849 10454063 1.920000e-43 187.0
24 TraesCS2A01G480900 chr3D 95.312 64 2 1 370 432 546474196 546474259 2.580000e-17 100.0
25 TraesCS2A01G480900 chr7B 81.150 1183 209 12 1879 3054 162779676 162780851 0.000000e+00 937.0
26 TraesCS2A01G480900 chr7A 81.102 1180 203 18 1884 3053 207901380 207900211 0.000000e+00 926.0
27 TraesCS2A01G480900 chr7A 95.714 70 3 0 3445 3514 579564468 579564399 3.310000e-21 113.0
28 TraesCS2A01G480900 chr7D 80.289 1177 216 15 1882 3050 198622870 198621702 0.000000e+00 874.0
29 TraesCS2A01G480900 chrUn 94.361 532 26 2 2534 3065 337092333 337092860 0.000000e+00 813.0
30 TraesCS2A01G480900 chrUn 95.714 70 3 0 3445 3514 67136208 67136139 3.310000e-21 113.0
31 TraesCS2A01G480900 chr5A 91.121 428 30 2 2646 3065 219244659 219245086 1.260000e-159 573.0
32 TraesCS2A01G480900 chr5A 93.084 347 22 2 1 345 255783194 255782848 1.300000e-139 507.0
33 TraesCS2A01G480900 chr5A 89.625 347 31 4 1 345 552740913 552741256 1.730000e-118 436.0
34 TraesCS2A01G480900 chr5A 94.048 84 5 0 2534 2617 219244586 219244669 1.180000e-25 128.0
35 TraesCS2A01G480900 chr6A 95.362 345 14 2 2 345 370485179 370484836 7.660000e-152 547.0
36 TraesCS2A01G480900 chr4A 94.509 346 17 2 1 345 889778 890122 2.150000e-147 532.0
37 TraesCS2A01G480900 chr4A 88.889 351 22 4 1 345 720523728 720524067 2.250000e-112 416.0
38 TraesCS2A01G480900 chr4A 93.750 64 3 1 370 432 180394037 180393974 1.200000e-15 95.3
39 TraesCS2A01G480900 chr4A 93.651 63 4 0 370 432 513061321 513061383 1.200000e-15 95.3
40 TraesCS2A01G480900 chr1A 93.103 348 21 3 1 345 535886437 535886784 1.300000e-139 507.0
41 TraesCS2A01G480900 chr1A 93.182 44 0 3 463 505 533450925 533450884 1.220000e-05 62.1
42 TraesCS2A01G480900 chr6D 90.202 347 28 5 1 345 109366817 109367159 7.990000e-122 448.0
43 TraesCS2A01G480900 chr4B 88.068 352 24 4 1 345 238613031 238613371 6.310000e-108 401.0
44 TraesCS2A01G480900 chr4B 97.101 69 2 0 3443 3511 483578477 483578545 2.560000e-22 117.0
45 TraesCS2A01G480900 chr4B 95.714 70 3 0 3445 3514 373995924 373995855 3.310000e-21 113.0
46 TraesCS2A01G480900 chr1B 97.101 69 2 0 3443 3511 18688722 18688790 2.560000e-22 117.0
47 TraesCS2A01G480900 chr1B 95.833 72 2 1 3441 3511 251157848 251157919 9.210000e-22 115.0
48 TraesCS2A01G480900 chr6B 97.059 68 2 0 3444 3511 664459025 664459092 9.210000e-22 115.0
49 TraesCS2A01G480900 chr5B 95.714 70 3 0 3445 3514 239413968 239413899 3.310000e-21 113.0
50 TraesCS2A01G480900 chr5B 90.141 71 4 2 370 439 612636602 612636534 5.580000e-14 89.8
51 TraesCS2A01G480900 chr5D 96.429 56 1 1 378 432 528138721 528138776 1.550000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G480900 chr2A 718382142 718386195 4053 True 7487.0 7487 100.0000 1 4054 1 chr2A.!!$R4 4053
1 TraesCS2A01G480900 chr2A 1608655 1609174 519 False 773.0 773 93.2330 2534 3065 1 chr2A.!!$F1 531
2 TraesCS2A01G480900 chr2D 584255018 584258637 3619 True 1888.0 3677 87.1115 550 3973 2 chr2D.!!$R2 3423
3 TraesCS2A01G480900 chr2B 703622361 703625360 2999 True 1884.5 3670 87.7330 443 3318 2 chr2B.!!$R2 2875
4 TraesCS2A01G480900 chr3A 16629885 16632783 2898 False 865.0 1489 82.4640 1008 3055 2 chr3A.!!$F1 2047
5 TraesCS2A01G480900 chr3B 26751727 26753822 2095 True 835.0 1472 86.8740 1008 3055 2 chr3B.!!$R2 2047
6 TraesCS2A01G480900 chr3B 14524445 14526516 2071 True 823.0 1439 86.9160 1008 3055 2 chr3B.!!$R1 2047
7 TraesCS2A01G480900 chr3D 10453849 10456134 2285 False 818.5 1450 86.3620 1008 3055 2 chr3D.!!$F2 2047
8 TraesCS2A01G480900 chr7B 162779676 162780851 1175 False 937.0 937 81.1500 1879 3054 1 chr7B.!!$F1 1175
9 TraesCS2A01G480900 chr7A 207900211 207901380 1169 True 926.0 926 81.1020 1884 3053 1 chr7A.!!$R1 1169
10 TraesCS2A01G480900 chr7D 198621702 198622870 1168 True 874.0 874 80.2890 1882 3050 1 chr7D.!!$R1 1168
11 TraesCS2A01G480900 chrUn 337092333 337092860 527 False 813.0 813 94.3610 2534 3065 1 chrUn.!!$F1 531
12 TraesCS2A01G480900 chr5A 219244586 219245086 500 False 350.5 573 92.5845 2534 3065 2 chr5A.!!$F2 531


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
436 437 0.117742 TTTAGGAACGGAGGGGGAGT 59.882 55.000 0.0 0.0 0.0 3.85 F
836 988 0.321653 CTTTTCCTCCACTGACCCCG 60.322 60.000 0.0 0.0 0.0 5.73 F
1608 1833 1.004862 CCCCTTTCCTCACCTCCTTTC 59.995 57.143 0.0 0.0 0.0 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1584 1808 0.332972 GAGGTGAGGAAAGGGGCAAT 59.667 55.0 0.00 0.0 0.0 3.56 R
1638 1877 0.393537 CCTGGGAGTGATGCCAGTTC 60.394 60.0 13.77 0.0 0.0 3.01 R
3513 5255 0.033504 TCTGACTGTCGGAGCCAAAC 59.966 55.0 15.13 0.0 0.0 2.93 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 8.546597 AAAATATTGGCCATTAAAAGTGTGAC 57.453 30.769 6.09 0.00 0.00 3.67
48 49 4.535526 ATTGGCCATTAAAAGTGTGACC 57.464 40.909 6.09 0.00 0.00 4.02
49 50 3.237268 TGGCCATTAAAAGTGTGACCT 57.763 42.857 0.00 0.00 0.00 3.85
50 51 4.374689 TGGCCATTAAAAGTGTGACCTA 57.625 40.909 0.00 0.00 0.00 3.08
51 52 4.331968 TGGCCATTAAAAGTGTGACCTAG 58.668 43.478 0.00 0.00 0.00 3.02
52 53 3.128764 GGCCATTAAAAGTGTGACCTAGC 59.871 47.826 0.00 0.00 0.00 3.42
53 54 3.128764 GCCATTAAAAGTGTGACCTAGCC 59.871 47.826 0.00 0.00 0.00 3.93
54 55 4.589908 CCATTAAAAGTGTGACCTAGCCT 58.410 43.478 0.00 0.00 0.00 4.58
55 56 5.010282 CCATTAAAAGTGTGACCTAGCCTT 58.990 41.667 0.00 0.00 0.00 4.35
56 57 6.177610 CCATTAAAAGTGTGACCTAGCCTTA 58.822 40.000 0.00 0.00 0.00 2.69
57 58 6.657541 CCATTAAAAGTGTGACCTAGCCTTAA 59.342 38.462 0.00 0.00 0.00 1.85
58 59 7.148239 CCATTAAAAGTGTGACCTAGCCTTAAG 60.148 40.741 0.00 0.00 0.00 1.85
59 60 4.976540 AAAGTGTGACCTAGCCTTAAGT 57.023 40.909 0.97 0.00 0.00 2.24
60 61 4.976540 AAGTGTGACCTAGCCTTAAGTT 57.023 40.909 0.97 0.00 0.00 2.66
61 62 6.429521 AAAGTGTGACCTAGCCTTAAGTTA 57.570 37.500 0.97 0.00 0.00 2.24
62 63 6.429521 AAGTGTGACCTAGCCTTAAGTTAA 57.570 37.500 0.97 0.00 0.00 2.01
63 64 6.429521 AGTGTGACCTAGCCTTAAGTTAAA 57.570 37.500 0.97 0.00 0.00 1.52
64 65 6.834107 AGTGTGACCTAGCCTTAAGTTAAAA 58.166 36.000 0.97 0.00 0.00 1.52
65 66 7.284820 AGTGTGACCTAGCCTTAAGTTAAAAA 58.715 34.615 0.97 0.00 0.00 1.94
141 142 9.635404 TCCTTAATATACATACAAACCTTTGGG 57.365 33.333 2.94 0.00 42.34 4.12
142 143 9.635404 CCTTAATATACATACAAACCTTTGGGA 57.365 33.333 2.94 0.00 42.34 4.37
146 147 8.691661 ATATACATACAAACCTTTGGGATGAC 57.308 34.615 16.12 0.00 42.34 3.06
147 148 4.735369 ACATACAAACCTTTGGGATGACA 58.265 39.130 16.12 0.00 42.34 3.58
148 149 5.332743 ACATACAAACCTTTGGGATGACAT 58.667 37.500 16.12 0.00 42.34 3.06
149 150 5.779771 ACATACAAACCTTTGGGATGACATT 59.220 36.000 16.12 0.00 42.34 2.71
150 151 6.951198 ACATACAAACCTTTGGGATGACATTA 59.049 34.615 16.12 0.00 42.34 1.90
151 152 5.722021 ACAAACCTTTGGGATGACATTAC 57.278 39.130 2.94 0.00 42.34 1.89
152 153 5.144100 ACAAACCTTTGGGATGACATTACA 58.856 37.500 2.94 0.00 42.34 2.41
153 154 5.779771 ACAAACCTTTGGGATGACATTACAT 59.220 36.000 2.94 0.00 42.34 2.29
154 155 6.951198 ACAAACCTTTGGGATGACATTACATA 59.049 34.615 2.94 0.00 42.34 2.29
155 156 7.619302 ACAAACCTTTGGGATGACATTACATAT 59.381 33.333 2.94 0.00 42.34 1.78
156 157 8.477256 CAAACCTTTGGGATGACATTACATATT 58.523 33.333 0.00 0.00 34.59 1.28
157 158 8.608185 AACCTTTGGGATGACATTACATATTT 57.392 30.769 0.00 0.00 36.25 1.40
158 159 8.608185 ACCTTTGGGATGACATTACATATTTT 57.392 30.769 0.00 0.00 36.25 1.82
159 160 9.045745 ACCTTTGGGATGACATTACATATTTTT 57.954 29.630 0.00 0.00 36.25 1.94
203 204 9.905713 AAAAATGACAGTGTACATATGTATCCT 57.094 29.630 18.27 13.57 32.54 3.24
204 205 9.905713 AAAATGACAGTGTACATATGTATCCTT 57.094 29.630 18.27 8.12 32.54 3.36
205 206 9.905713 AAATGACAGTGTACATATGTATCCTTT 57.094 29.630 18.27 12.77 32.54 3.11
206 207 9.905713 AATGACAGTGTACATATGTATCCTTTT 57.094 29.630 18.27 6.98 32.54 2.27
207 208 8.716646 TGACAGTGTACATATGTATCCTTTTG 57.283 34.615 18.27 12.76 32.54 2.44
208 209 8.318412 TGACAGTGTACATATGTATCCTTTTGT 58.682 33.333 18.27 15.26 32.54 2.83
209 210 9.162764 GACAGTGTACATATGTATCCTTTTGTT 57.837 33.333 18.27 0.00 32.54 2.83
210 211 9.515226 ACAGTGTACATATGTATCCTTTTGTTT 57.485 29.630 18.27 0.00 32.54 2.83
237 238 9.355916 AGAAAGGAATTATATAAGGAAACCAGC 57.644 33.333 1.02 0.00 0.00 4.85
238 239 9.131791 GAAAGGAATTATATAAGGAAACCAGCA 57.868 33.333 1.02 0.00 0.00 4.41
239 240 8.697507 AAGGAATTATATAAGGAAACCAGCAG 57.302 34.615 1.02 0.00 0.00 4.24
240 241 7.816411 AGGAATTATATAAGGAAACCAGCAGT 58.184 34.615 1.02 0.00 0.00 4.40
241 242 8.945193 AGGAATTATATAAGGAAACCAGCAGTA 58.055 33.333 1.02 0.00 0.00 2.74
242 243 9.740710 GGAATTATATAAGGAAACCAGCAGTAT 57.259 33.333 1.02 0.00 0.00 2.12
272 273 5.713792 TTTTGGAAAGCAATTATCGACCA 57.286 34.783 0.00 0.00 0.00 4.02
273 274 5.913137 TTTGGAAAGCAATTATCGACCAT 57.087 34.783 0.00 0.00 0.00 3.55
274 275 5.913137 TTGGAAAGCAATTATCGACCATT 57.087 34.783 0.00 0.00 0.00 3.16
275 276 5.247507 TGGAAAGCAATTATCGACCATTG 57.752 39.130 12.21 12.21 34.09 2.82
276 277 4.946772 TGGAAAGCAATTATCGACCATTGA 59.053 37.500 18.37 0.00 32.91 2.57
277 278 5.593909 TGGAAAGCAATTATCGACCATTGAT 59.406 36.000 18.37 11.61 32.91 2.57
278 279 5.916883 GGAAAGCAATTATCGACCATTGATG 59.083 40.000 18.37 0.99 32.91 3.07
291 292 4.036567 CCATTGATGGTTGTAGTGCATG 57.963 45.455 1.73 0.00 43.05 4.06
292 293 3.441163 CATTGATGGTTGTAGTGCATGC 58.559 45.455 11.82 11.82 0.00 4.06
293 294 2.197283 TGATGGTTGTAGTGCATGCA 57.803 45.000 18.46 18.46 0.00 3.96
294 295 2.512705 TGATGGTTGTAGTGCATGCAA 58.487 42.857 24.58 4.60 0.00 4.08
295 296 2.889678 TGATGGTTGTAGTGCATGCAAA 59.110 40.909 24.58 10.51 35.11 3.68
296 297 2.791383 TGGTTGTAGTGCATGCAAAC 57.209 45.000 24.58 21.78 41.23 2.93
297 298 2.791383 GGTTGTAGTGCATGCAAACA 57.209 45.000 24.58 25.13 40.61 2.83
298 299 2.428530 TGGTTGTAGTGCATGCAAACAA 59.571 40.909 31.15 31.15 46.58 2.83
299 300 3.118992 TGGTTGTAGTGCATGCAAACAAA 60.119 39.130 34.06 24.03 46.58 2.83
300 301 3.868077 GGTTGTAGTGCATGCAAACAAAA 59.132 39.130 34.06 20.91 40.61 2.44
301 302 4.511082 GGTTGTAGTGCATGCAAACAAAAT 59.489 37.500 34.06 13.33 40.61 1.82
302 303 5.007528 GGTTGTAGTGCATGCAAACAAAATT 59.992 36.000 34.06 14.35 40.61 1.82
303 304 6.458070 GGTTGTAGTGCATGCAAACAAAATTT 60.458 34.615 34.06 13.55 40.61 1.82
304 305 6.045698 TGTAGTGCATGCAAACAAAATTTG 57.954 33.333 26.49 3.89 0.00 2.32
305 306 4.555348 AGTGCATGCAAACAAAATTTGG 57.445 36.364 24.58 0.00 34.12 3.28
306 307 4.197750 AGTGCATGCAAACAAAATTTGGA 58.802 34.783 24.58 0.00 34.38 3.53
307 308 4.639310 AGTGCATGCAAACAAAATTTGGAA 59.361 33.333 24.58 0.00 33.62 3.53
308 309 4.971220 GTGCATGCAAACAAAATTTGGAAG 59.029 37.500 24.58 0.46 33.62 3.46
309 310 4.036498 TGCATGCAAACAAAATTTGGAAGG 59.964 37.500 20.30 0.00 33.62 3.46
310 311 4.036616 GCATGCAAACAAAATTTGGAAGGT 59.963 37.500 14.21 0.00 33.62 3.50
311 312 5.750650 CATGCAAACAAAATTTGGAAGGTC 58.249 37.500 10.71 0.00 33.62 3.85
312 313 4.836825 TGCAAACAAAATTTGGAAGGTCA 58.163 34.783 10.71 0.00 34.12 4.02
313 314 5.435291 TGCAAACAAAATTTGGAAGGTCAT 58.565 33.333 10.71 0.00 34.12 3.06
314 315 5.884792 TGCAAACAAAATTTGGAAGGTCATT 59.115 32.000 10.71 0.00 34.12 2.57
315 316 7.050377 TGCAAACAAAATTTGGAAGGTCATTA 58.950 30.769 10.71 0.00 34.12 1.90
316 317 7.718753 TGCAAACAAAATTTGGAAGGTCATTAT 59.281 29.630 10.71 0.00 34.12 1.28
317 318 8.016801 GCAAACAAAATTTGGAAGGTCATTATG 58.983 33.333 10.71 0.00 34.12 1.90
318 319 9.054922 CAAACAAAATTTGGAAGGTCATTATGT 57.945 29.630 10.71 0.00 34.12 2.29
319 320 8.831715 AACAAAATTTGGAAGGTCATTATGTC 57.168 30.769 10.71 0.00 34.12 3.06
320 321 7.961351 ACAAAATTTGGAAGGTCATTATGTCA 58.039 30.769 10.71 0.00 34.12 3.58
321 322 8.428063 ACAAAATTTGGAAGGTCATTATGTCAA 58.572 29.630 10.71 0.00 34.12 3.18
322 323 9.270640 CAAAATTTGGAAGGTCATTATGTCAAA 57.729 29.630 0.00 0.00 0.00 2.69
327 328 9.473007 TTTGGAAGGTCATTATGTCAAATATGA 57.527 29.630 0.00 0.00 0.00 2.15
345 346 9.449719 CAAATATGACTTACTATATTGGGACCC 57.550 37.037 2.45 2.45 31.69 4.46
346 347 7.750947 ATATGACTTACTATATTGGGACCCC 57.249 40.000 8.45 2.69 0.00 4.95
347 348 4.898268 TGACTTACTATATTGGGACCCCA 58.102 43.478 8.45 3.10 45.63 4.96
358 359 3.673543 TGGGACCCCACATAATTTACC 57.326 47.619 8.45 0.00 41.89 2.85
359 360 2.245287 TGGGACCCCACATAATTTACCC 59.755 50.000 8.45 0.00 41.89 3.69
360 361 2.425247 GGGACCCCACATAATTTACCCC 60.425 54.545 0.00 0.00 35.81 4.95
361 362 2.516702 GGACCCCACATAATTTACCCCT 59.483 50.000 0.00 0.00 0.00 4.79
362 363 3.436035 GGACCCCACATAATTTACCCCTC 60.436 52.174 0.00 0.00 0.00 4.30
363 364 3.462205 GACCCCACATAATTTACCCCTCT 59.538 47.826 0.00 0.00 0.00 3.69
364 365 3.462205 ACCCCACATAATTTACCCCTCTC 59.538 47.826 0.00 0.00 0.00 3.20
365 366 3.722101 CCCCACATAATTTACCCCTCTCT 59.278 47.826 0.00 0.00 0.00 3.10
366 367 4.202472 CCCCACATAATTTACCCCTCTCTC 60.202 50.000 0.00 0.00 0.00 3.20
367 368 4.660771 CCCACATAATTTACCCCTCTCTCT 59.339 45.833 0.00 0.00 0.00 3.10
368 369 5.844516 CCCACATAATTTACCCCTCTCTCTA 59.155 44.000 0.00 0.00 0.00 2.43
369 370 6.502158 CCCACATAATTTACCCCTCTCTCTAT 59.498 42.308 0.00 0.00 0.00 1.98
370 371 7.678598 CCCACATAATTTACCCCTCTCTCTATA 59.321 40.741 0.00 0.00 0.00 1.31
371 372 9.273137 CCACATAATTTACCCCTCTCTCTATAT 57.727 37.037 0.00 0.00 0.00 0.86
381 382 8.760362 ACCCCTCTCTCTATATATATATCCGT 57.240 38.462 8.55 0.00 0.00 4.69
382 383 9.855823 ACCCCTCTCTCTATATATATATCCGTA 57.144 37.037 8.55 0.00 0.00 4.02
396 397 5.661056 ATATCCGTATGTGGTCCATAGTG 57.339 43.478 0.00 0.00 36.71 2.74
397 398 2.036387 TCCGTATGTGGTCCATAGTGG 58.964 52.381 0.00 0.00 36.71 4.00
398 399 2.036387 CCGTATGTGGTCCATAGTGGA 58.964 52.381 0.00 0.00 45.98 4.02
412 413 7.496346 TCCATAGTGGAATCTTTACAAGACT 57.504 36.000 0.00 0.00 45.00 3.24
413 414 7.918076 TCCATAGTGGAATCTTTACAAGACTT 58.082 34.615 0.00 0.00 45.00 3.01
414 415 9.042450 TCCATAGTGGAATCTTTACAAGACTTA 57.958 33.333 0.00 0.00 45.00 2.24
415 416 9.838339 CCATAGTGGAATCTTTACAAGACTTAT 57.162 33.333 0.00 0.00 40.96 1.73
430 431 7.498443 ACAAGACTTATATTTAGGAACGGAGG 58.502 38.462 0.00 0.00 0.00 4.30
431 432 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
432 433 5.543020 AGACTTATATTTAGGAACGGAGGGG 59.457 44.000 0.00 0.00 0.00 4.79
433 434 4.596212 ACTTATATTTAGGAACGGAGGGGG 59.404 45.833 0.00 0.00 0.00 5.40
434 435 2.873053 TATTTAGGAACGGAGGGGGA 57.127 50.000 0.00 0.00 0.00 4.81
435 436 1.508256 ATTTAGGAACGGAGGGGGAG 58.492 55.000 0.00 0.00 0.00 4.30
436 437 0.117742 TTTAGGAACGGAGGGGGAGT 59.882 55.000 0.00 0.00 0.00 3.85
437 438 1.009997 TTAGGAACGGAGGGGGAGTA 58.990 55.000 0.00 0.00 0.00 2.59
438 439 1.238615 TAGGAACGGAGGGGGAGTAT 58.761 55.000 0.00 0.00 0.00 2.12
439 440 0.342313 AGGAACGGAGGGGGAGTATT 59.658 55.000 0.00 0.00 0.00 1.89
440 441 1.577242 AGGAACGGAGGGGGAGTATTA 59.423 52.381 0.00 0.00 0.00 0.98
441 442 2.181642 AGGAACGGAGGGGGAGTATTAT 59.818 50.000 0.00 0.00 0.00 1.28
479 481 7.767261 ACAAATATATATCACTCTCCTCGCTC 58.233 38.462 0.00 0.00 0.00 5.03
487 489 3.513912 TCACTCTCCTCGCTCCAAAATAA 59.486 43.478 0.00 0.00 0.00 1.40
490 492 4.878397 ACTCTCCTCGCTCCAAAATAATTG 59.122 41.667 0.00 0.00 0.00 2.32
492 494 5.253330 TCTCCTCGCTCCAAAATAATTGTT 58.747 37.500 0.00 0.00 0.00 2.83
493 495 5.123820 TCTCCTCGCTCCAAAATAATTGTTG 59.876 40.000 0.00 0.00 0.00 3.33
540 542 6.917217 GCTTTTTATGAGCTGAGTATGACT 57.083 37.500 0.00 0.00 37.18 3.41
541 543 7.313951 GCTTTTTATGAGCTGAGTATGACTT 57.686 36.000 0.00 0.00 37.18 3.01
542 544 7.756558 GCTTTTTATGAGCTGAGTATGACTTT 58.243 34.615 0.00 0.00 37.18 2.66
543 545 7.695618 GCTTTTTATGAGCTGAGTATGACTTTG 59.304 37.037 0.00 0.00 37.18 2.77
544 546 8.846943 TTTTTATGAGCTGAGTATGACTTTGA 57.153 30.769 0.00 0.00 0.00 2.69
545 547 7.834068 TTTATGAGCTGAGTATGACTTTGAC 57.166 36.000 0.00 0.00 0.00 3.18
652 797 1.003696 TCTCTCTCCAGCTCGTCTTCA 59.996 52.381 0.00 0.00 0.00 3.02
708 853 4.821589 CTCTCTCGCAACGCCCCC 62.822 72.222 0.00 0.00 0.00 5.40
836 988 0.321653 CTTTTCCTCCACTGACCCCG 60.322 60.000 0.00 0.00 0.00 5.73
837 989 1.774894 TTTTCCTCCACTGACCCCGG 61.775 60.000 0.00 0.00 0.00 5.73
877 1030 3.791586 GAGCCAGTCCAGCCCCTC 61.792 72.222 0.00 0.00 0.00 4.30
878 1031 4.345286 AGCCAGTCCAGCCCCTCT 62.345 66.667 0.00 0.00 0.00 3.69
880 1033 3.086600 CCAGTCCAGCCCCTCTCC 61.087 72.222 0.00 0.00 0.00 3.71
882 1035 3.288381 AGTCCAGCCCCTCTCCCT 61.288 66.667 0.00 0.00 0.00 4.20
886 1039 2.445654 CAGCCCCTCTCCCTCTCC 60.446 72.222 0.00 0.00 0.00 3.71
889 1042 2.612251 CCCCTCTCCCTCTCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
894 1047 1.522900 CTCTCCCTCTCCCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
895 1048 1.421646 CTCTCCCTCTCCCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
897 1050 1.421646 CTCCCTCTCCCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
898 1051 1.010793 TCCCTCTCCCTCTCTCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
939 1092 2.951458 GTGTGCCCCGCTGTTTAC 59.049 61.111 0.00 0.00 0.00 2.01
988 1141 4.541648 GCGGAGGGGGAGGAGCTA 62.542 72.222 0.00 0.00 0.00 3.32
989 1142 2.203567 CGGAGGGGGAGGAGCTAG 60.204 72.222 0.00 0.00 0.00 3.42
990 1143 2.769120 CGGAGGGGGAGGAGCTAGA 61.769 68.421 0.00 0.00 0.00 2.43
991 1144 1.152419 GGAGGGGGAGGAGCTAGAC 60.152 68.421 0.00 0.00 0.00 2.59
992 1145 1.152419 GAGGGGGAGGAGCTAGACC 60.152 68.421 0.00 0.00 0.00 3.85
1188 1363 1.769026 AGCTCTTCGCCATCTACTCA 58.231 50.000 0.00 0.00 40.39 3.41
1222 1433 1.474478 CGTGCTCCACTCACTCTGTAT 59.526 52.381 0.00 0.00 32.54 2.29
1278 1490 4.164030 TCCCTGATCTAACAATTGCTGCTA 59.836 41.667 5.05 0.00 0.00 3.49
1328 1540 4.988598 AACACGTCCGGCCTGCTG 62.989 66.667 0.00 0.00 0.00 4.41
1568 1792 2.746277 GCGACCTCCGTGCCAAAT 60.746 61.111 0.00 0.00 41.15 2.32
1584 1808 5.827797 GTGCCAAATCCATGTAAGGAATCTA 59.172 40.000 0.00 0.00 41.92 1.98
1608 1833 1.004862 CCCCTTTCCTCACCTCCTTTC 59.995 57.143 0.00 0.00 0.00 2.62
1638 1877 5.464168 CACCTTAATTGGAAAGCAGAACAG 58.536 41.667 0.00 0.00 0.00 3.16
1716 1968 0.379669 CTGCGATCTGGGCAAACATC 59.620 55.000 0.00 0.00 40.39 3.06
1808 2576 4.328983 CCGCGCTCTAAATTCAGTTCTAAA 59.671 41.667 5.56 0.00 0.00 1.85
1906 3199 3.744719 CTGCGACGAGAACGGGGA 61.745 66.667 0.00 0.00 44.46 4.81
2146 3439 3.050275 GCCCCAGTGCACGAAGAC 61.050 66.667 12.01 0.00 0.00 3.01
2432 3725 1.130678 GGGACCTCATCATCTCCCCC 61.131 65.000 0.00 0.00 37.02 5.40
3080 4402 2.189499 GCGGCTCCATTGTCATCCC 61.189 63.158 0.00 0.00 0.00 3.85
3081 4403 1.526917 CGGCTCCATTGTCATCCCC 60.527 63.158 0.00 0.00 0.00 4.81
3082 4404 1.614711 GGCTCCATTGTCATCCCCA 59.385 57.895 0.00 0.00 0.00 4.96
3083 4405 0.466922 GGCTCCATTGTCATCCCCAG 60.467 60.000 0.00 0.00 0.00 4.45
3084 4406 1.105759 GCTCCATTGTCATCCCCAGC 61.106 60.000 0.00 0.00 0.00 4.85
3085 4407 0.466922 CTCCATTGTCATCCCCAGCC 60.467 60.000 0.00 0.00 0.00 4.85
3100 4422 4.740822 GCCCAGGTTGGCGATGGT 62.741 66.667 0.00 0.00 42.54 3.55
3105 4427 0.744414 CAGGTTGGCGATGGTAGGTG 60.744 60.000 0.00 0.00 0.00 4.00
3140 4463 6.534059 GTCACAATCACATACACATACACAC 58.466 40.000 0.00 0.00 0.00 3.82
3141 4464 6.147000 GTCACAATCACATACACATACACACA 59.853 38.462 0.00 0.00 0.00 3.72
3144 4467 6.147656 ACAATCACATACACATACACACACAG 59.852 38.462 0.00 0.00 0.00 3.66
3145 4468 4.565022 TCACATACACATACACACACAGG 58.435 43.478 0.00 0.00 0.00 4.00
3147 4470 3.244387 ACATACACATACACACACAGGCA 60.244 43.478 0.00 0.00 0.00 4.75
3191 4526 2.568623 AACTAGTGCTGGAAAGGGTG 57.431 50.000 0.00 0.00 0.00 4.61
3224 4579 5.223449 TGGTTTGTTGGTTGGTTTTGTAA 57.777 34.783 0.00 0.00 0.00 2.41
3252 4608 7.173218 ACTCATTTTGGTTGGATATATAGTGCG 59.827 37.037 0.00 0.00 0.00 5.34
3253 4609 5.682943 TTTTGGTTGGATATATAGTGCGC 57.317 39.130 0.00 0.00 0.00 6.09
3272 4628 1.580942 TTGCACGCAAGAGGAATGC 59.419 52.632 0.00 0.00 43.62 3.56
3277 4633 1.329906 CACGCAAGAGGAATGCTCATC 59.670 52.381 4.25 0.00 41.64 2.92
3293 4649 6.395426 TGCTCATCATTTGTTCTTCAGTTT 57.605 33.333 0.00 0.00 0.00 2.66
3305 4661 3.390135 TCTTCAGTTTACCTGCAGTTCG 58.610 45.455 13.81 0.00 41.25 3.95
3329 5036 7.990886 TCGAAATAGGCCACTTTACTAATGAAT 59.009 33.333 5.01 0.00 0.00 2.57
3330 5037 8.283291 CGAAATAGGCCACTTTACTAATGAATC 58.717 37.037 5.01 0.00 0.00 2.52
3331 5038 9.343539 GAAATAGGCCACTTTACTAATGAATCT 57.656 33.333 5.01 0.00 0.00 2.40
3334 5041 7.439108 AGGCCACTTTACTAATGAATCTAGT 57.561 36.000 5.01 0.00 34.08 2.57
3343 5085 6.426646 ACTAATGAATCTAGTCATCCACCC 57.573 41.667 0.00 0.00 37.25 4.61
3346 5088 3.994317 TGAATCTAGTCATCCACCCAGA 58.006 45.455 0.00 0.00 0.00 3.86
3373 5115 3.706802 TCATTTCAAAGCGCACAAGAA 57.293 38.095 11.47 5.26 0.00 2.52
3374 5116 4.241590 TCATTTCAAAGCGCACAAGAAT 57.758 36.364 11.47 0.96 0.00 2.40
3408 5150 8.041323 TGTTTTTGTTTGCTATAAACCTGGAAA 58.959 29.630 0.00 0.00 0.00 3.13
3413 5155 6.071616 TGTTTGCTATAAACCTGGAAATGGAC 60.072 38.462 0.00 0.00 0.00 4.02
3436 5178 1.381851 CCTTCCCTCTTTGCTGCCT 59.618 57.895 0.00 0.00 0.00 4.75
3437 5179 0.964358 CCTTCCCTCTTTGCTGCCTG 60.964 60.000 0.00 0.00 0.00 4.85
3438 5180 1.593296 CTTCCCTCTTTGCTGCCTGC 61.593 60.000 0.00 0.00 43.25 4.85
3439 5181 3.437795 CCCTCTTTGCTGCCTGCG 61.438 66.667 0.00 0.00 46.63 5.18
3440 5182 3.437795 CCTCTTTGCTGCCTGCGG 61.438 66.667 0.00 0.00 46.63 5.69
3441 5183 3.437795 CTCTTTGCTGCCTGCGGG 61.438 66.667 7.41 7.41 46.63 6.13
3442 5184 4.269523 TCTTTGCTGCCTGCGGGT 62.270 61.111 14.55 0.00 46.63 5.28
3443 5185 4.047059 CTTTGCTGCCTGCGGGTG 62.047 66.667 14.55 7.90 46.63 4.61
3448 5190 4.659172 CTGCCTGCGGGTGGGAAA 62.659 66.667 14.55 0.00 34.45 3.13
3449 5191 4.211330 TGCCTGCGGGTGGGAAAA 62.211 61.111 14.55 0.00 34.45 2.29
3450 5192 2.915137 GCCTGCGGGTGGGAAAAA 60.915 61.111 14.55 0.00 34.45 1.94
3478 5220 3.383162 AGACCAGGTCTCACGGATT 57.617 52.632 17.31 0.00 38.71 3.01
3479 5221 2.526888 AGACCAGGTCTCACGGATTA 57.473 50.000 17.31 0.00 38.71 1.75
3480 5222 2.379972 AGACCAGGTCTCACGGATTAG 58.620 52.381 17.31 0.00 38.71 1.73
3481 5223 0.824759 ACCAGGTCTCACGGATTAGC 59.175 55.000 0.00 0.00 0.00 3.09
3482 5224 0.824109 CCAGGTCTCACGGATTAGCA 59.176 55.000 0.00 0.00 0.00 3.49
3483 5225 1.202463 CCAGGTCTCACGGATTAGCAG 60.202 57.143 0.00 0.00 0.00 4.24
3484 5226 1.115467 AGGTCTCACGGATTAGCAGG 58.885 55.000 0.00 0.00 0.00 4.85
3485 5227 0.824759 GGTCTCACGGATTAGCAGGT 59.175 55.000 0.00 0.00 0.00 4.00
3486 5228 1.471676 GGTCTCACGGATTAGCAGGTG 60.472 57.143 0.00 0.00 0.00 4.00
3487 5229 1.476891 GTCTCACGGATTAGCAGGTGA 59.523 52.381 0.00 0.00 37.77 4.02
3489 5231 1.847328 TCACGGATTAGCAGGTGAGA 58.153 50.000 0.00 0.00 34.71 3.27
3490 5232 2.388735 TCACGGATTAGCAGGTGAGAT 58.611 47.619 0.00 0.00 34.71 2.75
3491 5233 2.362397 TCACGGATTAGCAGGTGAGATC 59.638 50.000 0.00 0.00 34.71 2.75
3492 5234 1.689273 ACGGATTAGCAGGTGAGATCC 59.311 52.381 0.00 0.00 34.32 3.36
3493 5235 1.688735 CGGATTAGCAGGTGAGATCCA 59.311 52.381 10.36 0.00 36.84 3.41
3494 5236 2.301296 CGGATTAGCAGGTGAGATCCAT 59.699 50.000 10.36 0.00 36.84 3.41
3495 5237 3.616076 CGGATTAGCAGGTGAGATCCATC 60.616 52.174 10.36 0.00 36.84 3.51
3496 5238 3.307339 GGATTAGCAGGTGAGATCCATCC 60.307 52.174 6.61 0.00 36.97 3.51
3497 5239 2.783379 TAGCAGGTGAGATCCATCCT 57.217 50.000 0.00 0.00 0.00 3.24
3498 5240 1.129917 AGCAGGTGAGATCCATCCTG 58.870 55.000 17.81 17.81 42.17 3.86
3499 5241 1.126488 GCAGGTGAGATCCATCCTGA 58.874 55.000 23.17 0.00 42.00 3.86
3500 5242 1.698532 GCAGGTGAGATCCATCCTGAT 59.301 52.381 23.17 0.00 42.00 2.90
3501 5243 2.550423 GCAGGTGAGATCCATCCTGATG 60.550 54.545 23.17 0.00 42.00 3.07
3513 5255 0.603065 TCCTGATGGATGATACGCGG 59.397 55.000 12.47 0.00 37.46 6.46
3514 5256 0.318441 CCTGATGGATGATACGCGGT 59.682 55.000 12.47 0.00 34.57 5.68
3515 5257 1.270305 CCTGATGGATGATACGCGGTT 60.270 52.381 12.47 0.00 34.57 4.44
3516 5258 2.483876 CTGATGGATGATACGCGGTTT 58.516 47.619 12.47 0.00 0.00 3.27
3517 5259 2.209273 TGATGGATGATACGCGGTTTG 58.791 47.619 12.47 0.00 0.00 2.93
3518 5260 1.531149 GATGGATGATACGCGGTTTGG 59.469 52.381 12.47 0.00 0.00 3.28
3519 5261 1.092921 TGGATGATACGCGGTTTGGC 61.093 55.000 12.47 0.00 0.00 4.52
3520 5262 0.814010 GGATGATACGCGGTTTGGCT 60.814 55.000 12.47 0.00 0.00 4.75
3521 5263 0.582005 GATGATACGCGGTTTGGCTC 59.418 55.000 12.47 0.00 0.00 4.70
3522 5264 0.814010 ATGATACGCGGTTTGGCTCC 60.814 55.000 12.47 0.00 0.00 4.70
3530 5272 1.070786 GGTTTGGCTCCGACAGTCA 59.929 57.895 0.41 0.00 33.68 3.41
3543 5285 1.122019 ACAGTCAGACCACCCACCTC 61.122 60.000 0.00 0.00 0.00 3.85
3544 5286 1.536662 AGTCAGACCACCCACCTCC 60.537 63.158 0.00 0.00 0.00 4.30
3546 5288 1.128188 GTCAGACCACCCACCTCCTT 61.128 60.000 0.00 0.00 0.00 3.36
3547 5289 1.127567 TCAGACCACCCACCTCCTTG 61.128 60.000 0.00 0.00 0.00 3.61
3549 5291 1.073199 GACCACCCACCTCCTTGTG 59.927 63.158 0.00 0.00 35.98 3.33
3550 5292 2.282462 CCACCCACCTCCTTGTGC 60.282 66.667 0.00 0.00 34.85 4.57
3552 5294 2.776526 ACCCACCTCCTTGTGCCA 60.777 61.111 0.00 0.00 34.85 4.92
3554 5296 1.379044 CCCACCTCCTTGTGCCATC 60.379 63.158 0.00 0.00 34.85 3.51
3555 5297 1.687612 CCACCTCCTTGTGCCATCT 59.312 57.895 0.00 0.00 34.85 2.90
3556 5298 0.393537 CCACCTCCTTGTGCCATCTC 60.394 60.000 0.00 0.00 34.85 2.75
3558 5300 0.617413 ACCTCCTTGTGCCATCTCTG 59.383 55.000 0.00 0.00 0.00 3.35
3560 5302 0.107312 CTCCTTGTGCCATCTCTGGG 60.107 60.000 0.00 0.00 43.36 4.45
3561 5303 1.077212 CCTTGTGCCATCTCTGGGG 60.077 63.158 0.00 0.00 43.36 4.96
3562 5304 1.077212 CTTGTGCCATCTCTGGGGG 60.077 63.158 0.00 0.00 43.36 5.40
3563 5305 1.541118 TTGTGCCATCTCTGGGGGA 60.541 57.895 0.00 0.00 43.36 4.81
3564 5306 1.565390 TTGTGCCATCTCTGGGGGAG 61.565 60.000 0.00 0.00 43.36 4.30
3578 5320 3.060866 GGAGAGCCCACTTCGTGT 58.939 61.111 0.00 0.00 34.14 4.49
3579 5321 1.079750 GGAGAGCCCACTTCGTGTC 60.080 63.158 0.00 0.00 34.14 3.67
3580 5322 1.536943 GGAGAGCCCACTTCGTGTCT 61.537 60.000 0.00 0.00 34.14 3.41
3581 5323 0.318762 GAGAGCCCACTTCGTGTCTT 59.681 55.000 0.00 0.00 0.00 3.01
3582 5324 0.318762 AGAGCCCACTTCGTGTCTTC 59.681 55.000 0.00 0.00 0.00 2.87
3583 5325 1.006102 AGCCCACTTCGTGTCTTCG 60.006 57.895 0.00 0.00 0.00 3.79
3584 5326 1.300697 GCCCACTTCGTGTCTTCGT 60.301 57.895 0.00 0.00 0.00 3.85
3613 5355 0.232303 CGCTTTCGCTTCGACAACTT 59.768 50.000 0.00 0.00 34.89 2.66
3614 5356 1.718672 CGCTTTCGCTTCGACAACTTC 60.719 52.381 0.00 0.00 34.89 3.01
3622 5364 2.032071 CGACAACTTCGGGGGCTT 59.968 61.111 0.00 0.00 44.60 4.35
3623 5365 2.033194 CGACAACTTCGGGGGCTTC 61.033 63.158 0.00 0.00 44.60 3.86
3624 5366 1.674651 GACAACTTCGGGGGCTTCC 60.675 63.158 0.00 0.00 0.00 3.46
3625 5367 2.406002 GACAACTTCGGGGGCTTCCA 62.406 60.000 0.00 0.00 37.22 3.53
3626 5368 1.971695 CAACTTCGGGGGCTTCCAC 60.972 63.158 0.00 0.00 37.22 4.02
3627 5369 2.154074 AACTTCGGGGGCTTCCACT 61.154 57.895 0.00 0.00 37.22 4.00
3628 5370 1.716028 AACTTCGGGGGCTTCCACTT 61.716 55.000 0.00 0.00 37.22 3.16
3629 5371 1.377333 CTTCGGGGGCTTCCACTTC 60.377 63.158 0.00 0.00 37.22 3.01
3630 5372 2.821679 CTTCGGGGGCTTCCACTTCC 62.822 65.000 0.00 0.00 37.22 3.46
3631 5373 4.778143 CGGGGGCTTCCACTTCCG 62.778 72.222 0.00 0.00 37.22 4.30
3632 5374 4.426313 GGGGGCTTCCACTTCCGG 62.426 72.222 0.00 0.00 37.22 5.14
3635 5377 4.344865 GGCTTCCACTTCCGGCCA 62.345 66.667 2.24 0.00 42.08 5.36
3642 5384 1.746615 CACTTCCGGCCATCCACAG 60.747 63.158 2.24 0.00 0.00 3.66
3651 5393 1.001764 CCATCCACAGGCTGCAAGA 60.002 57.895 15.89 9.33 34.07 3.02
3654 5396 0.403271 ATCCACAGGCTGCAAGAGTT 59.597 50.000 15.89 0.00 34.07 3.01
3669 5411 5.112220 CAAGAGTTGCAAAATGAGTAGCA 57.888 39.130 0.00 0.00 34.79 3.49
3670 5412 5.522456 CAAGAGTTGCAAAATGAGTAGCAA 58.478 37.500 0.00 0.00 43.90 3.91
3675 5417 2.245096 GCAAAATGAGTAGCAACAGCG 58.755 47.619 0.00 0.00 0.00 5.18
3676 5418 2.245096 CAAAATGAGTAGCAACAGCGC 58.755 47.619 0.00 0.00 0.00 5.92
3678 5420 0.321564 AATGAGTAGCAACAGCGCCA 60.322 50.000 2.29 0.00 0.00 5.69
3679 5421 0.742281 ATGAGTAGCAACAGCGCCAG 60.742 55.000 2.29 0.00 0.00 4.85
3680 5422 2.046892 AGTAGCAACAGCGCCAGG 60.047 61.111 2.29 0.00 0.00 4.45
3681 5423 2.358737 GTAGCAACAGCGCCAGGT 60.359 61.111 2.29 0.00 0.00 4.00
3682 5424 2.047274 TAGCAACAGCGCCAGGTC 60.047 61.111 2.29 0.00 0.00 3.85
3683 5425 2.878089 TAGCAACAGCGCCAGGTCA 61.878 57.895 2.29 0.00 0.00 4.02
3684 5426 2.184020 TAGCAACAGCGCCAGGTCAT 62.184 55.000 2.29 0.00 0.00 3.06
3685 5427 1.745115 GCAACAGCGCCAGGTCATA 60.745 57.895 2.29 0.00 0.00 2.15
3686 5428 1.097547 GCAACAGCGCCAGGTCATAT 61.098 55.000 2.29 0.00 0.00 1.78
3688 5430 0.541392 AACAGCGCCAGGTCATATGA 59.459 50.000 2.29 0.00 0.00 2.15
3689 5431 0.541392 ACAGCGCCAGGTCATATGAA 59.459 50.000 7.07 0.00 0.00 2.57
3690 5432 0.940126 CAGCGCCAGGTCATATGAAC 59.060 55.000 13.15 13.15 0.00 3.18
3691 5433 0.541392 AGCGCCAGGTCATATGAACA 59.459 50.000 22.52 0.00 33.22 3.18
3692 5434 1.065491 AGCGCCAGGTCATATGAACAA 60.065 47.619 22.52 0.00 33.22 2.83
3693 5435 1.742831 GCGCCAGGTCATATGAACAAA 59.257 47.619 22.52 0.00 33.22 2.83
3695 5437 3.758300 CGCCAGGTCATATGAACAAAAC 58.242 45.455 22.52 8.06 33.22 2.43
3696 5438 3.190327 CGCCAGGTCATATGAACAAAACA 59.810 43.478 22.52 0.00 33.22 2.83
3697 5439 4.672542 CGCCAGGTCATATGAACAAAACAG 60.673 45.833 22.52 5.24 33.22 3.16
3698 5440 4.380867 GCCAGGTCATATGAACAAAACAGG 60.381 45.833 22.52 13.80 33.22 4.00
3705 5517 3.733443 ATGAACAAAACAGGAACAGCC 57.267 42.857 0.00 0.00 0.00 4.85
3707 5519 0.744281 AACAAAACAGGAACAGCCCG 59.256 50.000 0.00 0.00 37.37 6.13
3710 5522 2.994643 AAAACAGGAACAGCCCGGGG 62.995 60.000 25.28 9.31 37.37 5.73
3726 5538 1.964933 CGGGGTGGTTGGTTTTGTAAT 59.035 47.619 0.00 0.00 0.00 1.89
3730 5542 4.021807 GGGGTGGTTGGTTTTGTAATACTG 60.022 45.833 0.00 0.00 0.00 2.74
3731 5543 4.552355 GGTGGTTGGTTTTGTAATACTGC 58.448 43.478 0.00 0.00 0.00 4.40
3732 5544 4.552355 GTGGTTGGTTTTGTAATACTGCC 58.448 43.478 0.00 0.00 0.00 4.85
3733 5545 3.574826 TGGTTGGTTTTGTAATACTGCCC 59.425 43.478 0.00 0.00 0.00 5.36
3734 5546 3.574826 GGTTGGTTTTGTAATACTGCCCA 59.425 43.478 0.00 0.00 0.00 5.36
3736 5548 5.279758 GGTTGGTTTTGTAATACTGCCCATT 60.280 40.000 0.00 0.00 0.00 3.16
3737 5549 6.227522 GTTGGTTTTGTAATACTGCCCATTT 58.772 36.000 0.00 0.00 0.00 2.32
3738 5550 6.426646 TGGTTTTGTAATACTGCCCATTTT 57.573 33.333 0.00 0.00 0.00 1.82
3739 5551 6.226787 TGGTTTTGTAATACTGCCCATTTTG 58.773 36.000 0.00 0.00 0.00 2.44
3740 5552 5.641636 GGTTTTGTAATACTGCCCATTTTGG 59.358 40.000 0.00 0.00 37.25 3.28
3741 5553 6.459923 GTTTTGTAATACTGCCCATTTTGGA 58.540 36.000 0.00 0.00 40.96 3.53
3745 5557 2.530460 TACTGCCCATTTTGGATGCT 57.470 45.000 0.00 0.00 40.96 3.79
3746 5558 2.530460 ACTGCCCATTTTGGATGCTA 57.470 45.000 0.00 0.00 40.96 3.49
3749 5561 2.360165 CTGCCCATTTTGGATGCTACTC 59.640 50.000 0.00 0.00 40.96 2.59
3759 5588 3.338249 TGGATGCTACTCTGTTCTTTGC 58.662 45.455 0.00 0.00 0.00 3.68
3780 5609 4.171754 GCTCTTCATTTCACTTGCCATTC 58.828 43.478 0.00 0.00 0.00 2.67
3782 5611 5.381174 TCTTCATTTCACTTGCCATTCTG 57.619 39.130 0.00 0.00 0.00 3.02
3788 5617 1.881973 TCACTTGCCATTCTGTTGAGC 59.118 47.619 0.00 0.00 0.00 4.26
3790 5619 1.884579 ACTTGCCATTCTGTTGAGCAG 59.115 47.619 0.00 0.00 46.34 4.24
3805 5634 8.196771 TCTGTTGAGCAGTTCATTGTTATTTTT 58.803 29.630 0.00 0.00 45.23 1.94
3806 5635 8.351495 TGTTGAGCAGTTCATTGTTATTTTTC 57.649 30.769 0.00 0.00 35.27 2.29
3808 5637 9.034544 GTTGAGCAGTTCATTGTTATTTTTCTT 57.965 29.630 0.00 0.00 35.27 2.52
3810 5639 7.867403 TGAGCAGTTCATTGTTATTTTTCTTCC 59.133 33.333 0.00 0.00 0.00 3.46
3812 5641 7.653311 AGCAGTTCATTGTTATTTTTCTTCCAC 59.347 33.333 0.00 0.00 0.00 4.02
3814 5643 8.971321 CAGTTCATTGTTATTTTTCTTCCACTG 58.029 33.333 0.00 0.00 0.00 3.66
3815 5644 8.143835 AGTTCATTGTTATTTTTCTTCCACTGG 58.856 33.333 0.00 0.00 0.00 4.00
3816 5645 6.454795 TCATTGTTATTTTTCTTCCACTGGC 58.545 36.000 0.00 0.00 0.00 4.85
3817 5646 4.864704 TGTTATTTTTCTTCCACTGGCC 57.135 40.909 0.00 0.00 0.00 5.36
3818 5647 3.576550 TGTTATTTTTCTTCCACTGGCCC 59.423 43.478 0.00 0.00 0.00 5.80
3819 5648 2.397044 ATTTTTCTTCCACTGGCCCA 57.603 45.000 0.00 0.00 0.00 5.36
3820 5649 1.408969 TTTTTCTTCCACTGGCCCAC 58.591 50.000 0.00 0.00 0.00 4.61
3821 5650 0.260230 TTTTCTTCCACTGGCCCACA 59.740 50.000 0.00 0.00 0.00 4.17
3822 5651 0.467290 TTTCTTCCACTGGCCCACAC 60.467 55.000 0.00 0.00 0.00 3.82
3823 5652 2.282462 CTTCCACTGGCCCACACC 60.282 66.667 0.00 0.00 0.00 4.16
3824 5653 4.263572 TTCCACTGGCCCACACCG 62.264 66.667 0.00 0.00 0.00 4.94
3834 5663 4.657824 CCACACCGCGACCGTCTT 62.658 66.667 8.23 0.00 0.00 3.01
3835 5664 3.103911 CACACCGCGACCGTCTTC 61.104 66.667 8.23 0.00 0.00 2.87
3836 5665 4.695231 ACACCGCGACCGTCTTCG 62.695 66.667 8.23 0.44 42.15 3.79
3837 5666 4.695231 CACCGCGACCGTCTTCGT 62.695 66.667 8.23 0.00 41.26 3.85
3838 5667 3.969802 ACCGCGACCGTCTTCGTT 61.970 61.111 8.23 0.00 41.26 3.85
3839 5668 3.170585 CCGCGACCGTCTTCGTTC 61.171 66.667 8.23 0.00 41.26 3.95
3840 5669 2.126965 CGCGACCGTCTTCGTTCT 60.127 61.111 0.00 0.00 41.26 3.01
3841 5670 1.133253 CGCGACCGTCTTCGTTCTA 59.867 57.895 0.00 0.00 41.26 2.10
3842 5671 0.453282 CGCGACCGTCTTCGTTCTAA 60.453 55.000 0.00 0.00 41.26 2.10
3843 5672 1.689959 GCGACCGTCTTCGTTCTAAA 58.310 50.000 0.00 0.00 41.26 1.85
3844 5673 2.053627 GCGACCGTCTTCGTTCTAAAA 58.946 47.619 0.00 0.00 41.26 1.52
3845 5674 2.472488 GCGACCGTCTTCGTTCTAAAAA 59.528 45.455 0.00 0.00 41.26 1.94
3862 5691 2.873604 AAAAACACCGCGACCGTCG 61.874 57.895 16.72 16.72 43.89 5.12
3873 5702 0.591741 CGACCGTCGATTGAGCTACC 60.592 60.000 16.03 0.00 43.74 3.18
3892 5721 2.379907 ACCCCATGTTCTTTGGTGATCT 59.620 45.455 0.00 0.00 31.99 2.75
3907 5736 4.520111 TGGTGATCTGGAGAAAACAACATG 59.480 41.667 0.00 0.00 0.00 3.21
3908 5737 4.479619 GTGATCTGGAGAAAACAACATGC 58.520 43.478 0.00 0.00 0.00 4.06
3909 5738 4.022935 GTGATCTGGAGAAAACAACATGCA 60.023 41.667 0.00 0.00 0.00 3.96
3910 5739 3.988379 TCTGGAGAAAACAACATGCAC 57.012 42.857 0.00 0.00 0.00 4.57
3912 5741 2.361757 CTGGAGAAAACAACATGCACCA 59.638 45.455 0.00 0.00 0.00 4.17
3913 5742 2.762887 TGGAGAAAACAACATGCACCAA 59.237 40.909 0.00 0.00 0.00 3.67
3914 5743 3.196469 TGGAGAAAACAACATGCACCAAA 59.804 39.130 0.00 0.00 0.00 3.28
3915 5744 3.803778 GGAGAAAACAACATGCACCAAAG 59.196 43.478 0.00 0.00 0.00 2.77
3916 5745 4.432712 GAGAAAACAACATGCACCAAAGT 58.567 39.130 0.00 0.00 0.00 2.66
3917 5746 4.831107 AGAAAACAACATGCACCAAAGTT 58.169 34.783 0.00 0.00 0.00 2.66
3918 5747 5.244755 AGAAAACAACATGCACCAAAGTTT 58.755 33.333 0.00 0.00 0.00 2.66
3919 5748 5.704978 AGAAAACAACATGCACCAAAGTTTT 59.295 32.000 14.66 14.66 39.52 2.43
3920 5749 5.956068 AAACAACATGCACCAAAGTTTTT 57.044 30.435 0.00 0.00 0.00 1.94
3956 5785 1.296715 GCACCGGAGTGGAGTGAAT 59.703 57.895 9.46 0.00 44.69 2.57
3966 5795 6.458751 CCGGAGTGGAGTGAATGAATAAATTG 60.459 42.308 0.00 0.00 42.00 2.32
3969 5798 7.283127 GGAGTGGAGTGAATGAATAAATTGCTA 59.717 37.037 0.00 0.00 0.00 3.49
3973 5802 9.023962 TGGAGTGAATGAATAAATTGCTACTTT 57.976 29.630 0.00 0.00 0.00 2.66
3974 5803 9.860898 GGAGTGAATGAATAAATTGCTACTTTT 57.139 29.630 0.00 0.00 0.00 2.27
3994 5823 2.997245 TGAGGATCAATGCCGCCA 59.003 55.556 0.00 0.00 45.97 5.69
3995 5824 1.451927 TGAGGATCAATGCCGCCAC 60.452 57.895 0.00 0.00 45.97 5.01
3996 5825 1.153086 GAGGATCAATGCCGCCACT 60.153 57.895 0.00 0.00 33.17 4.00
3997 5826 0.106708 GAGGATCAATGCCGCCACTA 59.893 55.000 0.00 0.00 33.17 2.74
3998 5827 0.767375 AGGATCAATGCCGCCACTAT 59.233 50.000 0.00 0.00 0.00 2.12
3999 5828 0.877071 GGATCAATGCCGCCACTATG 59.123 55.000 0.00 0.00 0.00 2.23
4000 5829 1.597742 GATCAATGCCGCCACTATGT 58.402 50.000 0.00 0.00 0.00 2.29
4001 5830 1.949525 GATCAATGCCGCCACTATGTT 59.050 47.619 0.00 0.00 0.00 2.71
4002 5831 2.700722 TCAATGCCGCCACTATGTTA 57.299 45.000 0.00 0.00 0.00 2.41
4003 5832 2.285083 TCAATGCCGCCACTATGTTAC 58.715 47.619 0.00 0.00 0.00 2.50
4004 5833 2.093181 TCAATGCCGCCACTATGTTACT 60.093 45.455 0.00 0.00 0.00 2.24
4005 5834 2.682856 CAATGCCGCCACTATGTTACTT 59.317 45.455 0.00 0.00 0.00 2.24
4006 5835 3.830744 ATGCCGCCACTATGTTACTTA 57.169 42.857 0.00 0.00 0.00 2.24
4007 5836 3.613494 TGCCGCCACTATGTTACTTAA 57.387 42.857 0.00 0.00 0.00 1.85
4008 5837 3.940319 TGCCGCCACTATGTTACTTAAA 58.060 40.909 0.00 0.00 0.00 1.52
4009 5838 4.519213 TGCCGCCACTATGTTACTTAAAT 58.481 39.130 0.00 0.00 0.00 1.40
4010 5839 4.334203 TGCCGCCACTATGTTACTTAAATG 59.666 41.667 0.00 0.00 0.00 2.32
4011 5840 4.334481 GCCGCCACTATGTTACTTAAATGT 59.666 41.667 0.00 0.00 0.00 2.71
4012 5841 5.524646 GCCGCCACTATGTTACTTAAATGTA 59.475 40.000 0.00 0.00 0.00 2.29
4013 5842 6.292703 GCCGCCACTATGTTACTTAAATGTAG 60.293 42.308 0.00 0.00 0.00 2.74
4014 5843 6.292703 CCGCCACTATGTTACTTAAATGTAGC 60.293 42.308 0.00 0.00 0.00 3.58
4015 5844 6.256975 CGCCACTATGTTACTTAAATGTAGCA 59.743 38.462 0.00 0.00 37.86 3.49
4016 5845 7.516785 CGCCACTATGTTACTTAAATGTAGCAG 60.517 40.741 0.00 0.00 37.14 4.24
4017 5846 7.254795 GCCACTATGTTACTTAAATGTAGCAGG 60.255 40.741 0.00 0.00 37.14 4.85
4018 5847 7.226720 CCACTATGTTACTTAAATGTAGCAGGG 59.773 40.741 0.00 0.00 37.14 4.45
4019 5848 7.985184 CACTATGTTACTTAAATGTAGCAGGGA 59.015 37.037 0.00 0.00 37.14 4.20
4020 5849 8.545472 ACTATGTTACTTAAATGTAGCAGGGAA 58.455 33.333 0.00 0.00 37.14 3.97
4021 5850 9.561069 CTATGTTACTTAAATGTAGCAGGGAAT 57.439 33.333 0.00 0.00 37.14 3.01
4022 5851 8.823220 ATGTTACTTAAATGTAGCAGGGAATT 57.177 30.769 0.00 0.00 37.14 2.17
4023 5852 8.644374 TGTTACTTAAATGTAGCAGGGAATTT 57.356 30.769 0.00 0.00 31.69 1.82
4024 5853 8.736244 TGTTACTTAAATGTAGCAGGGAATTTC 58.264 33.333 0.00 0.00 31.69 2.17
4025 5854 6.436843 ACTTAAATGTAGCAGGGAATTTCG 57.563 37.500 0.00 0.00 0.00 3.46
4026 5855 5.944007 ACTTAAATGTAGCAGGGAATTTCGT 59.056 36.000 0.00 0.00 0.00 3.85
4027 5856 4.965119 AAATGTAGCAGGGAATTTCGTC 57.035 40.909 0.00 0.00 0.00 4.20
4028 5857 3.627395 ATGTAGCAGGGAATTTCGTCA 57.373 42.857 0.00 0.00 0.00 4.35
4029 5858 2.972625 TGTAGCAGGGAATTTCGTCAG 58.027 47.619 0.00 0.00 0.00 3.51
4030 5859 2.565391 TGTAGCAGGGAATTTCGTCAGA 59.435 45.455 0.00 0.00 0.00 3.27
4031 5860 2.859165 AGCAGGGAATTTCGTCAGAA 57.141 45.000 0.00 0.00 33.98 3.02
4047 5876 9.884636 TTTCGTCAGAAATAATCTCCAGAATAA 57.115 29.630 0.00 0.00 41.06 1.40
4048 5877 8.873215 TCGTCAGAAATAATCTCCAGAATAAC 57.127 34.615 0.00 0.00 35.73 1.89
4049 5878 8.696374 TCGTCAGAAATAATCTCCAGAATAACT 58.304 33.333 0.00 0.00 35.73 2.24
4050 5879 9.319143 CGTCAGAAATAATCTCCAGAATAACTT 57.681 33.333 0.00 0.00 35.73 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 8.998377 GTCACACTTTTAATGGCCAATATTTTT 58.002 29.630 10.96 0.00 0.00 1.94
22 23 7.606073 GGTCACACTTTTAATGGCCAATATTTT 59.394 33.333 10.96 0.45 38.05 1.82
23 24 7.038373 AGGTCACACTTTTAATGGCCAATATTT 60.038 33.333 10.96 0.92 40.77 1.40
24 25 6.440328 AGGTCACACTTTTAATGGCCAATATT 59.560 34.615 10.96 1.38 40.77 1.28
25 26 5.957774 AGGTCACACTTTTAATGGCCAATAT 59.042 36.000 10.96 1.05 40.77 1.28
26 27 5.329399 AGGTCACACTTTTAATGGCCAATA 58.671 37.500 10.96 1.53 40.77 1.90
27 28 4.159557 AGGTCACACTTTTAATGGCCAAT 58.840 39.130 10.96 2.97 40.77 3.16
28 29 3.571590 AGGTCACACTTTTAATGGCCAA 58.428 40.909 10.96 0.00 40.77 4.52
29 30 3.237268 AGGTCACACTTTTAATGGCCA 57.763 42.857 8.56 8.56 40.77 5.36
30 31 3.128764 GCTAGGTCACACTTTTAATGGCC 59.871 47.826 0.00 0.00 38.46 5.36
31 32 3.128764 GGCTAGGTCACACTTTTAATGGC 59.871 47.826 0.00 0.00 0.00 4.40
32 33 4.589908 AGGCTAGGTCACACTTTTAATGG 58.410 43.478 0.00 0.00 0.00 3.16
33 34 7.390718 ACTTAAGGCTAGGTCACACTTTTAATG 59.609 37.037 7.53 0.00 0.00 1.90
34 35 7.459234 ACTTAAGGCTAGGTCACACTTTTAAT 58.541 34.615 7.53 0.00 0.00 1.40
35 36 6.834107 ACTTAAGGCTAGGTCACACTTTTAA 58.166 36.000 7.53 0.00 0.00 1.52
36 37 6.429521 ACTTAAGGCTAGGTCACACTTTTA 57.570 37.500 7.53 0.00 0.00 1.52
37 38 5.306114 ACTTAAGGCTAGGTCACACTTTT 57.694 39.130 7.53 0.00 0.00 2.27
38 39 4.976540 ACTTAAGGCTAGGTCACACTTT 57.023 40.909 7.53 0.00 0.00 2.66
39 40 4.976540 AACTTAAGGCTAGGTCACACTT 57.023 40.909 7.53 0.00 0.00 3.16
40 41 6.429521 TTTAACTTAAGGCTAGGTCACACT 57.570 37.500 7.53 0.00 0.00 3.55
41 42 7.500720 TTTTTAACTTAAGGCTAGGTCACAC 57.499 36.000 7.53 0.00 0.00 3.82
115 116 9.635404 CCCAAAGGTTTGTATGTATATTAAGGA 57.365 33.333 1.94 0.00 36.45 3.36
116 117 9.635404 TCCCAAAGGTTTGTATGTATATTAAGG 57.365 33.333 1.94 0.00 36.45 2.69
120 121 9.131791 GTCATCCCAAAGGTTTGTATGTATATT 57.868 33.333 11.70 0.00 36.45 1.28
121 122 8.278639 TGTCATCCCAAAGGTTTGTATGTATAT 58.721 33.333 11.70 0.00 36.45 0.86
122 123 7.634718 TGTCATCCCAAAGGTTTGTATGTATA 58.365 34.615 11.70 0.00 36.45 1.47
123 124 6.489603 TGTCATCCCAAAGGTTTGTATGTAT 58.510 36.000 11.70 0.00 36.45 2.29
124 125 5.882040 TGTCATCCCAAAGGTTTGTATGTA 58.118 37.500 11.70 4.34 36.45 2.29
125 126 4.735369 TGTCATCCCAAAGGTTTGTATGT 58.265 39.130 11.70 0.00 36.45 2.29
126 127 5.920193 ATGTCATCCCAAAGGTTTGTATG 57.080 39.130 1.94 5.51 36.45 2.39
127 128 6.951198 TGTAATGTCATCCCAAAGGTTTGTAT 59.049 34.615 1.94 0.00 36.45 2.29
128 129 6.307776 TGTAATGTCATCCCAAAGGTTTGTA 58.692 36.000 1.94 0.00 36.45 2.41
129 130 5.144100 TGTAATGTCATCCCAAAGGTTTGT 58.856 37.500 1.94 0.00 36.45 2.83
130 131 5.720371 TGTAATGTCATCCCAAAGGTTTG 57.280 39.130 0.00 0.00 37.90 2.93
131 132 8.608185 AATATGTAATGTCATCCCAAAGGTTT 57.392 30.769 0.00 0.00 0.00 3.27
132 133 8.608185 AAATATGTAATGTCATCCCAAAGGTT 57.392 30.769 0.00 0.00 0.00 3.50
133 134 8.608185 AAAATATGTAATGTCATCCCAAAGGT 57.392 30.769 0.00 0.00 0.00 3.50
177 178 9.905713 AGGATACATATGTACACTGTCATTTTT 57.094 29.630 17.69 0.00 41.41 1.94
178 179 9.905713 AAGGATACATATGTACACTGTCATTTT 57.094 29.630 17.69 4.98 41.41 1.82
179 180 9.905713 AAAGGATACATATGTACACTGTCATTT 57.094 29.630 17.69 16.21 41.41 2.32
180 181 9.905713 AAAAGGATACATATGTACACTGTCATT 57.094 29.630 17.69 11.64 41.41 2.57
181 182 9.330063 CAAAAGGATACATATGTACACTGTCAT 57.670 33.333 17.69 6.27 41.41 3.06
182 183 8.318412 ACAAAAGGATACATATGTACACTGTCA 58.682 33.333 17.69 0.00 41.41 3.58
183 184 8.718102 ACAAAAGGATACATATGTACACTGTC 57.282 34.615 17.69 10.69 41.41 3.51
184 185 9.515226 AAACAAAAGGATACATATGTACACTGT 57.485 29.630 17.69 15.12 41.41 3.55
211 212 9.355916 GCTGGTTTCCTTATATAATTCCTTTCT 57.644 33.333 0.00 0.00 0.00 2.52
212 213 9.131791 TGCTGGTTTCCTTATATAATTCCTTTC 57.868 33.333 0.00 0.00 0.00 2.62
213 214 9.136323 CTGCTGGTTTCCTTATATAATTCCTTT 57.864 33.333 0.00 0.00 0.00 3.11
214 215 8.282256 ACTGCTGGTTTCCTTATATAATTCCTT 58.718 33.333 0.00 0.00 0.00 3.36
215 216 7.816411 ACTGCTGGTTTCCTTATATAATTCCT 58.184 34.615 0.00 0.00 0.00 3.36
216 217 9.740710 ATACTGCTGGTTTCCTTATATAATTCC 57.259 33.333 0.00 0.00 0.00 3.01
249 250 6.090483 TGGTCGATAATTGCTTTCCAAAAA 57.910 33.333 0.00 0.00 36.92 1.94
250 251 5.713792 TGGTCGATAATTGCTTTCCAAAA 57.286 34.783 0.00 0.00 36.92 2.44
251 252 5.913137 ATGGTCGATAATTGCTTTCCAAA 57.087 34.783 0.00 0.00 36.92 3.28
252 253 5.417266 TCAATGGTCGATAATTGCTTTCCAA 59.583 36.000 14.82 0.00 37.94 3.53
253 254 4.946772 TCAATGGTCGATAATTGCTTTCCA 59.053 37.500 14.82 2.96 34.44 3.53
254 255 5.499139 TCAATGGTCGATAATTGCTTTCC 57.501 39.130 14.82 0.00 34.44 3.13
255 256 5.916883 CCATCAATGGTCGATAATTGCTTTC 59.083 40.000 14.82 0.00 43.05 2.62
256 257 5.835257 CCATCAATGGTCGATAATTGCTTT 58.165 37.500 14.82 3.90 43.05 3.51
257 258 5.443185 CCATCAATGGTCGATAATTGCTT 57.557 39.130 14.82 5.72 43.05 3.91
271 272 3.119424 TGCATGCACTACAACCATCAATG 60.119 43.478 18.46 0.00 0.00 2.82
272 273 3.090790 TGCATGCACTACAACCATCAAT 58.909 40.909 18.46 0.00 0.00 2.57
273 274 2.512705 TGCATGCACTACAACCATCAA 58.487 42.857 18.46 0.00 0.00 2.57
274 275 2.197283 TGCATGCACTACAACCATCA 57.803 45.000 18.46 0.00 0.00 3.07
275 276 3.244976 GTTTGCATGCACTACAACCATC 58.755 45.455 22.58 0.00 0.00 3.51
276 277 2.627221 TGTTTGCATGCACTACAACCAT 59.373 40.909 24.86 0.00 0.00 3.55
277 278 2.027385 TGTTTGCATGCACTACAACCA 58.973 42.857 24.86 13.56 0.00 3.67
278 279 2.791383 TGTTTGCATGCACTACAACC 57.209 45.000 24.86 11.69 0.00 3.77
279 280 5.655893 ATTTTGTTTGCATGCACTACAAC 57.344 34.783 31.75 26.79 33.42 3.32
280 281 6.457934 CCAAATTTTGTTTGCATGCACTACAA 60.458 34.615 29.72 29.72 32.50 2.41
281 282 5.007430 CCAAATTTTGTTTGCATGCACTACA 59.993 36.000 22.58 23.36 0.00 2.74
282 283 5.236047 TCCAAATTTTGTTTGCATGCACTAC 59.764 36.000 22.58 21.02 0.00 2.73
283 284 5.363101 TCCAAATTTTGTTTGCATGCACTA 58.637 33.333 22.58 8.92 0.00 2.74
284 285 4.197750 TCCAAATTTTGTTTGCATGCACT 58.802 34.783 22.58 0.00 0.00 4.40
285 286 4.548991 TCCAAATTTTGTTTGCATGCAC 57.451 36.364 22.58 10.94 0.00 4.57
286 287 4.036498 CCTTCCAAATTTTGTTTGCATGCA 59.964 37.500 18.46 18.46 0.00 3.96
287 288 4.036616 ACCTTCCAAATTTTGTTTGCATGC 59.963 37.500 11.82 11.82 0.00 4.06
288 289 5.296283 TGACCTTCCAAATTTTGTTTGCATG 59.704 36.000 8.26 0.00 0.00 4.06
289 290 5.435291 TGACCTTCCAAATTTTGTTTGCAT 58.565 33.333 8.26 0.00 0.00 3.96
290 291 4.836825 TGACCTTCCAAATTTTGTTTGCA 58.163 34.783 8.26 0.00 0.00 4.08
291 292 6.375945 AATGACCTTCCAAATTTTGTTTGC 57.624 33.333 8.26 0.00 0.00 3.68
292 293 9.054922 ACATAATGACCTTCCAAATTTTGTTTG 57.945 29.630 8.26 0.00 0.00 2.93
293 294 9.271828 GACATAATGACCTTCCAAATTTTGTTT 57.728 29.630 8.26 0.00 28.56 2.83
294 295 8.428063 TGACATAATGACCTTCCAAATTTTGTT 58.572 29.630 8.26 0.00 28.56 2.83
295 296 7.961351 TGACATAATGACCTTCCAAATTTTGT 58.039 30.769 8.26 0.00 30.26 2.83
296 297 8.830201 TTGACATAATGACCTTCCAAATTTTG 57.170 30.769 1.99 1.99 0.00 2.44
301 302 9.473007 TCATATTTGACATAATGACCTTCCAAA 57.527 29.630 0.00 0.00 0.00 3.28
319 320 9.449719 GGGTCCCAATATAGTAAGTCATATTTG 57.550 37.037 1.78 0.00 0.00 2.32
320 321 8.612145 GGGGTCCCAATATAGTAAGTCATATTT 58.388 37.037 10.98 0.00 35.81 1.40
321 322 7.742213 TGGGGTCCCAATATAGTAAGTCATATT 59.258 37.037 10.98 0.00 44.12 1.28
322 323 7.260891 TGGGGTCCCAATATAGTAAGTCATAT 58.739 38.462 10.98 0.00 44.12 1.78
323 324 6.636003 TGGGGTCCCAATATAGTAAGTCATA 58.364 40.000 10.98 0.00 44.12 2.15
324 325 5.482580 TGGGGTCCCAATATAGTAAGTCAT 58.517 41.667 10.98 0.00 44.12 3.06
325 326 4.898268 TGGGGTCCCAATATAGTAAGTCA 58.102 43.478 10.98 0.00 44.12 3.41
338 339 2.245287 GGGTAAATTATGTGGGGTCCCA 59.755 50.000 10.98 7.91 45.02 4.37
339 340 2.425247 GGGGTAAATTATGTGGGGTCCC 60.425 54.545 0.00 0.00 0.00 4.46
340 341 2.516702 AGGGGTAAATTATGTGGGGTCC 59.483 50.000 0.00 0.00 0.00 4.46
341 342 3.462205 AGAGGGGTAAATTATGTGGGGTC 59.538 47.826 0.00 0.00 0.00 4.46
342 343 3.462205 GAGAGGGGTAAATTATGTGGGGT 59.538 47.826 0.00 0.00 0.00 4.95
343 344 3.722101 AGAGAGGGGTAAATTATGTGGGG 59.278 47.826 0.00 0.00 0.00 4.96
344 345 4.660771 AGAGAGAGGGGTAAATTATGTGGG 59.339 45.833 0.00 0.00 0.00 4.61
345 346 5.896073 AGAGAGAGGGGTAAATTATGTGG 57.104 43.478 0.00 0.00 0.00 4.17
355 356 9.855823 ACGGATATATATATAGAGAGAGGGGTA 57.144 37.037 5.19 0.00 0.00 3.69
356 357 8.760362 ACGGATATATATATAGAGAGAGGGGT 57.240 38.462 5.19 0.00 0.00 4.95
370 371 9.078990 CACTATGGACCACATACGGATATATAT 57.921 37.037 0.00 0.00 41.03 0.86
371 372 7.504574 CCACTATGGACCACATACGGATATATA 59.495 40.741 0.00 0.00 40.96 0.86
372 373 6.323996 CCACTATGGACCACATACGGATATAT 59.676 42.308 0.00 0.00 40.96 0.86
373 374 5.655090 CCACTATGGACCACATACGGATATA 59.345 44.000 0.00 0.00 40.96 0.86
374 375 4.466370 CCACTATGGACCACATACGGATAT 59.534 45.833 0.00 0.00 40.96 1.63
375 376 3.830178 CCACTATGGACCACATACGGATA 59.170 47.826 0.00 0.00 40.96 2.59
376 377 2.632996 CCACTATGGACCACATACGGAT 59.367 50.000 0.00 0.00 40.96 4.18
377 378 2.036387 CCACTATGGACCACATACGGA 58.964 52.381 0.00 0.00 40.96 4.69
378 379 2.036387 TCCACTATGGACCACATACGG 58.964 52.381 0.00 0.00 42.67 4.02
404 405 8.636213 CCTCCGTTCCTAAATATAAGTCTTGTA 58.364 37.037 0.00 0.00 0.00 2.41
405 406 7.418712 CCCTCCGTTCCTAAATATAAGTCTTGT 60.419 40.741 0.00 0.00 0.00 3.16
406 407 6.929606 CCCTCCGTTCCTAAATATAAGTCTTG 59.070 42.308 0.00 0.00 0.00 3.02
407 408 6.042897 CCCCTCCGTTCCTAAATATAAGTCTT 59.957 42.308 0.00 0.00 0.00 3.01
408 409 5.543020 CCCCTCCGTTCCTAAATATAAGTCT 59.457 44.000 0.00 0.00 0.00 3.24
409 410 5.279859 CCCCCTCCGTTCCTAAATATAAGTC 60.280 48.000 0.00 0.00 0.00 3.01
410 411 4.596212 CCCCCTCCGTTCCTAAATATAAGT 59.404 45.833 0.00 0.00 0.00 2.24
411 412 4.842380 TCCCCCTCCGTTCCTAAATATAAG 59.158 45.833 0.00 0.00 0.00 1.73
412 413 4.830138 TCCCCCTCCGTTCCTAAATATAA 58.170 43.478 0.00 0.00 0.00 0.98
413 414 4.140615 ACTCCCCCTCCGTTCCTAAATATA 60.141 45.833 0.00 0.00 0.00 0.86
414 415 3.248888 CTCCCCCTCCGTTCCTAAATAT 58.751 50.000 0.00 0.00 0.00 1.28
415 416 2.022722 ACTCCCCCTCCGTTCCTAAATA 60.023 50.000 0.00 0.00 0.00 1.40
416 417 1.274242 ACTCCCCCTCCGTTCCTAAAT 60.274 52.381 0.00 0.00 0.00 1.40
417 418 0.117742 ACTCCCCCTCCGTTCCTAAA 59.882 55.000 0.00 0.00 0.00 1.85
418 419 1.009997 TACTCCCCCTCCGTTCCTAA 58.990 55.000 0.00 0.00 0.00 2.69
419 420 1.238615 ATACTCCCCCTCCGTTCCTA 58.761 55.000 0.00 0.00 0.00 2.94
420 421 0.342313 AATACTCCCCCTCCGTTCCT 59.658 55.000 0.00 0.00 0.00 3.36
421 422 2.092598 TAATACTCCCCCTCCGTTCC 57.907 55.000 0.00 0.00 0.00 3.62
422 423 4.154942 TGTATAATACTCCCCCTCCGTTC 58.845 47.826 0.00 0.00 0.00 3.95
423 424 4.203342 TGTATAATACTCCCCCTCCGTT 57.797 45.455 0.00 0.00 0.00 4.44
424 425 3.909427 TGTATAATACTCCCCCTCCGT 57.091 47.619 0.00 0.00 0.00 4.69
425 426 4.094476 ACATGTATAATACTCCCCCTCCG 58.906 47.826 0.00 0.00 0.00 4.63
426 427 8.849543 TTATACATGTATAATACTCCCCCTCC 57.150 38.462 27.12 0.00 34.21 4.30
457 458 6.427441 TGGAGCGAGGAGAGTGATATATATT 58.573 40.000 0.00 0.00 0.00 1.28
466 468 2.393271 ATTTTGGAGCGAGGAGAGTG 57.607 50.000 0.00 0.00 0.00 3.51
470 472 5.106157 ACAACAATTATTTTGGAGCGAGGAG 60.106 40.000 0.00 0.00 0.00 3.69
471 473 4.764823 ACAACAATTATTTTGGAGCGAGGA 59.235 37.500 0.00 0.00 0.00 3.71
472 474 4.858692 CACAACAATTATTTTGGAGCGAGG 59.141 41.667 0.00 0.00 0.00 4.63
473 475 4.858692 CCACAACAATTATTTTGGAGCGAG 59.141 41.667 0.00 0.00 0.00 5.03
475 477 4.555262 ACCACAACAATTATTTTGGAGCG 58.445 39.130 8.62 0.00 0.00 5.03
477 479 9.541143 ACTAAAACCACAACAATTATTTTGGAG 57.459 29.630 8.62 0.00 0.00 3.86
492 494 8.400186 GCTGAGTAGTTTAAAACTAAAACCACA 58.600 33.333 0.00 0.00 44.95 4.17
493 495 8.618677 AGCTGAGTAGTTTAAAACTAAAACCAC 58.381 33.333 0.00 0.00 44.95 4.16
533 535 5.446473 GCATGTGCTACTGTCAAAGTCATAC 60.446 44.000 0.00 0.00 40.56 2.39
536 538 2.807967 GCATGTGCTACTGTCAAAGTCA 59.192 45.455 0.00 0.00 40.56 3.41
537 539 2.807967 TGCATGTGCTACTGTCAAAGTC 59.192 45.455 6.55 0.00 42.66 3.01
539 541 2.810274 AGTGCATGTGCTACTGTCAAAG 59.190 45.455 6.55 0.00 42.66 2.77
540 542 2.807967 GAGTGCATGTGCTACTGTCAAA 59.192 45.455 12.51 0.00 42.66 2.69
541 543 2.224257 TGAGTGCATGTGCTACTGTCAA 60.224 45.455 12.51 0.00 42.66 3.18
542 544 1.344114 TGAGTGCATGTGCTACTGTCA 59.656 47.619 12.51 5.61 42.66 3.58
543 545 1.728971 GTGAGTGCATGTGCTACTGTC 59.271 52.381 12.51 3.72 42.66 3.51
544 546 1.345741 AGTGAGTGCATGTGCTACTGT 59.654 47.619 12.51 0.00 42.66 3.55
545 547 1.730612 CAGTGAGTGCATGTGCTACTG 59.269 52.381 12.51 12.97 42.66 2.74
597 742 1.135660 CGCGCTACTCAAGACTCAAGA 60.136 52.381 5.56 0.00 0.00 3.02
598 743 1.263776 CGCGCTACTCAAGACTCAAG 58.736 55.000 5.56 0.00 0.00 3.02
599 744 0.732880 GCGCGCTACTCAAGACTCAA 60.733 55.000 26.67 0.00 0.00 3.02
600 745 1.154016 GCGCGCTACTCAAGACTCA 60.154 57.895 26.67 0.00 0.00 3.41
601 746 1.154016 TGCGCGCTACTCAAGACTC 60.154 57.895 33.29 0.00 0.00 3.36
602 747 1.444553 GTGCGCGCTACTCAAGACT 60.445 57.895 33.29 0.00 0.00 3.24
603 748 2.778997 CGTGCGCGCTACTCAAGAC 61.779 63.158 33.29 17.93 0.00 3.01
708 853 1.118838 AGAGAAAGGGGATCTGCTCG 58.881 55.000 0.00 0.00 34.70 5.03
836 988 0.399806 AGAGGGAAGATGAGGAGGCC 60.400 60.000 0.00 0.00 0.00 5.19
837 989 1.047801 GAGAGGGAAGATGAGGAGGC 58.952 60.000 0.00 0.00 0.00 4.70
838 990 2.038659 GTGAGAGGGAAGATGAGGAGG 58.961 57.143 0.00 0.00 0.00 4.30
839 991 1.680735 CGTGAGAGGGAAGATGAGGAG 59.319 57.143 0.00 0.00 0.00 3.69
877 1030 1.421646 GAGAGAGAGAGGGAGAGGGAG 59.578 61.905 0.00 0.00 0.00 4.30
878 1031 1.010793 AGAGAGAGAGAGGGAGAGGGA 59.989 57.143 0.00 0.00 0.00 4.20
880 1033 2.370189 GAGAGAGAGAGAGAGGGAGAGG 59.630 59.091 0.00 0.00 0.00 3.69
882 1035 3.309296 GAGAGAGAGAGAGAGAGGGAGA 58.691 54.545 0.00 0.00 0.00 3.71
886 1039 3.312890 AGAGGAGAGAGAGAGAGAGAGG 58.687 54.545 0.00 0.00 0.00 3.69
889 1042 4.039004 CAGAGAGAGGAGAGAGAGAGAGAG 59.961 54.167 0.00 0.00 0.00 3.20
894 1047 1.138859 CGCAGAGAGAGGAGAGAGAGA 59.861 57.143 0.00 0.00 0.00 3.10
895 1048 1.586422 CGCAGAGAGAGGAGAGAGAG 58.414 60.000 0.00 0.00 0.00 3.20
897 1050 1.775039 CGCGCAGAGAGAGGAGAGAG 61.775 65.000 8.75 0.00 0.00 3.20
898 1051 1.817520 CGCGCAGAGAGAGGAGAGA 60.818 63.158 8.75 0.00 0.00 3.10
978 1131 3.228017 GCCGGTCTAGCTCCTCCC 61.228 72.222 1.90 0.00 0.00 4.30
983 1136 1.899534 ATCTCGGCCGGTCTAGCTC 60.900 63.158 27.83 0.00 0.00 4.09
984 1137 2.196229 ATCTCGGCCGGTCTAGCT 59.804 61.111 27.83 3.28 0.00 3.32
985 1138 1.735376 TTCATCTCGGCCGGTCTAGC 61.735 60.000 27.83 0.00 0.00 3.42
986 1139 0.030908 GTTCATCTCGGCCGGTCTAG 59.969 60.000 27.83 15.80 0.00 2.43
987 1140 0.395311 AGTTCATCTCGGCCGGTCTA 60.395 55.000 27.83 8.80 0.00 2.59
988 1141 1.668101 GAGTTCATCTCGGCCGGTCT 61.668 60.000 27.83 12.68 33.25 3.85
989 1142 1.227002 GAGTTCATCTCGGCCGGTC 60.227 63.158 27.83 0.00 33.25 4.79
990 1143 2.893398 GAGTTCATCTCGGCCGGT 59.107 61.111 27.83 9.24 33.25 5.28
1222 1433 3.960102 GCTTGGGGATCAATGGAATGTAA 59.040 43.478 0.00 0.00 34.45 2.41
1253 1465 3.314635 CAGCAATTGTTAGATCAGGGAGC 59.685 47.826 7.40 0.00 0.00 4.70
1278 1490 2.355756 CTGGACGCGGATTCAATTCAAT 59.644 45.455 12.47 0.00 0.00 2.57
1397 1621 1.376609 GGCCGATGAATGTGGTGTCC 61.377 60.000 0.00 0.00 0.00 4.02
1551 1775 2.746277 ATTTGGCACGGAGGTCGC 60.746 61.111 0.00 0.00 43.89 5.19
1568 1792 4.202567 GGGGCAATAGATTCCTTACATGGA 60.203 45.833 0.00 0.00 0.00 3.41
1584 1808 0.332972 GAGGTGAGGAAAGGGGCAAT 59.667 55.000 0.00 0.00 0.00 3.56
1608 1833 2.691409 TCCAATTAAGGTGCGAGGAG 57.309 50.000 0.00 0.00 0.00 3.69
1638 1877 0.393537 CCTGGGAGTGATGCCAGTTC 60.394 60.000 13.77 0.00 0.00 3.01
1716 1968 1.354337 CGACATCAAGTGGGCGACAG 61.354 60.000 1.61 0.00 33.38 3.51
1808 2576 3.003689 CACCAAGAAACAGAGTCGCATTT 59.996 43.478 0.00 0.00 0.00 2.32
2453 3746 3.259876 TGTAGTCCACCATGGTGTAGTTC 59.740 47.826 36.62 24.67 44.02 3.01
3084 4406 1.153168 CTACCATCGCCAACCTGGG 60.153 63.158 0.00 0.00 38.19 4.45
3085 4407 1.153168 CCTACCATCGCCAACCTGG 60.153 63.158 0.00 0.00 41.55 4.45
3140 4463 1.275657 GTCGTCGTGTTTGCCTGTG 59.724 57.895 0.00 0.00 0.00 3.66
3141 4464 0.741574 TTGTCGTCGTGTTTGCCTGT 60.742 50.000 0.00 0.00 0.00 4.00
3144 4467 0.653636 TTCTTGTCGTCGTGTTTGCC 59.346 50.000 0.00 0.00 0.00 4.52
3145 4468 1.061421 TGTTCTTGTCGTCGTGTTTGC 59.939 47.619 0.00 0.00 0.00 3.68
3147 4470 3.372822 ACAATGTTCTTGTCGTCGTGTTT 59.627 39.130 0.00 0.00 0.00 2.83
3191 4526 5.649782 ACCAACAAACCAATCTGATCATC 57.350 39.130 0.00 0.00 0.00 2.92
3272 4628 8.103948 AGGTAAACTGAAGAACAAATGATGAG 57.896 34.615 0.00 0.00 0.00 2.90
3293 4649 2.419574 GGCCTATTTCGAACTGCAGGTA 60.420 50.000 19.93 0.00 0.00 3.08
3305 4661 9.343539 AGATTCATTAGTAAAGTGGCCTATTTC 57.656 33.333 3.32 0.19 0.00 2.17
3329 5036 1.062886 CCCTCTGGGTGGATGACTAGA 60.063 57.143 0.00 0.00 38.25 2.43
3330 5037 1.062886 TCCCTCTGGGTGGATGACTAG 60.063 57.143 2.25 0.00 44.74 2.57
3331 5038 1.015609 TCCCTCTGGGTGGATGACTA 58.984 55.000 2.25 0.00 44.74 2.59
3333 5040 0.991920 TTTCCCTCTGGGTGGATGAC 59.008 55.000 2.25 0.00 44.74 3.06
3334 5041 1.846439 GATTTCCCTCTGGGTGGATGA 59.154 52.381 2.25 0.00 44.74 2.92
3343 5085 4.418392 CGCTTTGAAATGATTTCCCTCTG 58.582 43.478 14.73 3.13 38.90 3.35
3346 5088 2.562298 TGCGCTTTGAAATGATTTCCCT 59.438 40.909 14.73 0.00 38.90 4.20
3361 5103 4.637534 ACAGAATCATATTCTTGTGCGCTT 59.362 37.500 9.73 0.00 0.00 4.68
3397 5139 2.690786 CGACGTCCATTTCCAGGTTTA 58.309 47.619 10.58 0.00 0.00 2.01
3398 5140 1.519408 CGACGTCCATTTCCAGGTTT 58.481 50.000 10.58 0.00 0.00 3.27
3413 5155 2.391389 GCAAAGAGGGAAGGCGACG 61.391 63.158 0.00 0.00 0.00 5.12
3460 5202 2.379972 CTAATCCGTGAGACCTGGTCT 58.620 52.381 28.70 28.70 46.42 3.85
3461 5203 1.202428 GCTAATCCGTGAGACCTGGTC 60.202 57.143 19.20 19.20 0.00 4.02
3462 5204 0.824759 GCTAATCCGTGAGACCTGGT 59.175 55.000 0.00 0.00 0.00 4.00
3463 5205 0.824109 TGCTAATCCGTGAGACCTGG 59.176 55.000 0.00 0.00 0.00 4.45
3464 5206 1.202463 CCTGCTAATCCGTGAGACCTG 60.202 57.143 0.00 0.00 0.00 4.00
3465 5207 1.115467 CCTGCTAATCCGTGAGACCT 58.885 55.000 0.00 0.00 0.00 3.85
3466 5208 0.824759 ACCTGCTAATCCGTGAGACC 59.175 55.000 0.00 0.00 0.00 3.85
3467 5209 1.476891 TCACCTGCTAATCCGTGAGAC 59.523 52.381 0.00 0.00 31.80 3.36
3468 5210 1.847328 TCACCTGCTAATCCGTGAGA 58.153 50.000 0.00 0.00 31.80 3.27
3469 5211 2.215907 CTCACCTGCTAATCCGTGAG 57.784 55.000 2.01 2.01 44.38 3.51
3470 5212 1.847328 TCTCACCTGCTAATCCGTGA 58.153 50.000 0.00 0.00 34.26 4.35
3471 5213 2.546795 GGATCTCACCTGCTAATCCGTG 60.547 54.545 0.00 0.00 0.00 4.94
3472 5214 1.689273 GGATCTCACCTGCTAATCCGT 59.311 52.381 0.00 0.00 0.00 4.69
3473 5215 1.688735 TGGATCTCACCTGCTAATCCG 59.311 52.381 0.00 0.00 39.00 4.18
3474 5216 3.307339 GGATGGATCTCACCTGCTAATCC 60.307 52.174 0.00 0.00 37.09 3.01
3475 5217 3.582208 AGGATGGATCTCACCTGCTAATC 59.418 47.826 0.00 0.00 0.00 1.75
3476 5218 3.327172 CAGGATGGATCTCACCTGCTAAT 59.673 47.826 15.37 0.00 42.30 1.73
3477 5219 2.702478 CAGGATGGATCTCACCTGCTAA 59.298 50.000 15.37 0.00 42.30 3.09
3478 5220 2.091111 TCAGGATGGATCTCACCTGCTA 60.091 50.000 19.77 8.05 46.36 3.49
3479 5221 1.129917 CAGGATGGATCTCACCTGCT 58.870 55.000 15.37 0.00 42.30 4.24
3480 5222 1.126488 TCAGGATGGATCTCACCTGC 58.874 55.000 19.77 0.23 46.36 4.85
3495 5237 0.318441 ACCGCGTATCATCCATCAGG 59.682 55.000 4.92 0.00 0.00 3.86
3496 5238 2.154854 AACCGCGTATCATCCATCAG 57.845 50.000 4.92 0.00 0.00 2.90
3497 5239 2.209273 CAAACCGCGTATCATCCATCA 58.791 47.619 4.92 0.00 0.00 3.07
3498 5240 1.531149 CCAAACCGCGTATCATCCATC 59.469 52.381 4.92 0.00 0.00 3.51
3499 5241 1.593196 CCAAACCGCGTATCATCCAT 58.407 50.000 4.92 0.00 0.00 3.41
3500 5242 1.092921 GCCAAACCGCGTATCATCCA 61.093 55.000 4.92 0.00 0.00 3.41
3501 5243 0.814010 AGCCAAACCGCGTATCATCC 60.814 55.000 4.92 0.00 0.00 3.51
3502 5244 0.582005 GAGCCAAACCGCGTATCATC 59.418 55.000 4.92 0.00 0.00 2.92
3503 5245 0.814010 GGAGCCAAACCGCGTATCAT 60.814 55.000 4.92 0.00 0.00 2.45
3504 5246 1.448893 GGAGCCAAACCGCGTATCA 60.449 57.895 4.92 0.00 0.00 2.15
3505 5247 2.522638 CGGAGCCAAACCGCGTATC 61.523 63.158 4.92 0.00 43.74 2.24
3506 5248 2.510691 CGGAGCCAAACCGCGTAT 60.511 61.111 4.92 0.00 43.74 3.06
3512 5254 0.951040 CTGACTGTCGGAGCCAAACC 60.951 60.000 11.20 0.00 0.00 3.27
3513 5255 0.033504 TCTGACTGTCGGAGCCAAAC 59.966 55.000 15.13 0.00 0.00 2.93
3514 5256 0.033504 GTCTGACTGTCGGAGCCAAA 59.966 55.000 19.21 0.00 31.37 3.28
3515 5257 1.666011 GTCTGACTGTCGGAGCCAA 59.334 57.895 19.21 0.00 31.37 4.52
3516 5258 2.276116 GGTCTGACTGTCGGAGCCA 61.276 63.158 29.50 4.79 42.71 4.75
3517 5259 2.276116 TGGTCTGACTGTCGGAGCC 61.276 63.158 33.67 27.17 46.64 4.70
3519 5261 1.587054 GGTGGTCTGACTGTCGGAG 59.413 63.158 19.21 4.23 31.37 4.63
3520 5262 1.906824 GGGTGGTCTGACTGTCGGA 60.907 63.158 15.13 15.13 0.00 4.55
3521 5263 2.207229 TGGGTGGTCTGACTGTCGG 61.207 63.158 10.41 10.41 0.00 4.79
3522 5264 1.006102 GTGGGTGGTCTGACTGTCG 60.006 63.158 7.85 0.00 0.00 4.35
3530 5272 1.073706 ACAAGGAGGTGGGTGGTCT 60.074 57.895 0.00 0.00 0.00 3.85
3544 5286 3.469099 CTCCCCCAGAGATGGCACAAG 62.469 61.905 0.00 0.00 46.50 3.16
3546 5288 1.997311 CTCCCCCAGAGATGGCACA 60.997 63.158 0.00 0.00 46.50 4.57
3547 5289 2.914289 CTCCCCCAGAGATGGCAC 59.086 66.667 0.00 0.00 46.50 5.01
3570 5312 3.591764 CGACCCACGAAGACACGAAGT 62.592 57.143 0.00 0.00 44.64 3.01
3571 5313 1.002250 CGACCCACGAAGACACGAAG 61.002 60.000 0.00 0.00 45.77 3.79
3572 5314 1.008194 CGACCCACGAAGACACGAA 60.008 57.895 0.00 0.00 45.77 3.85
3573 5315 2.640989 CGACCCACGAAGACACGA 59.359 61.111 0.00 0.00 45.77 4.35
3582 5324 1.708027 GAAAGCGATTCGACCCACG 59.292 57.895 10.88 0.00 44.09 4.94
3613 5355 3.327404 GGAAGTGGAAGCCCCCGA 61.327 66.667 0.00 0.00 0.00 5.14
3614 5356 4.778143 CGGAAGTGGAAGCCCCCG 62.778 72.222 0.00 0.00 0.00 5.73
3615 5357 4.426313 CCGGAAGTGGAAGCCCCC 62.426 72.222 0.00 0.00 0.00 5.40
3618 5360 3.645268 ATGGCCGGAAGTGGAAGCC 62.645 63.158 5.05 0.00 44.13 4.35
3620 5362 1.452108 GGATGGCCGGAAGTGGAAG 60.452 63.158 5.05 0.00 0.00 3.46
3621 5363 2.227757 TGGATGGCCGGAAGTGGAA 61.228 57.895 5.05 0.00 36.79 3.53
3622 5364 2.609299 TGGATGGCCGGAAGTGGA 60.609 61.111 5.05 0.00 36.79 4.02
3623 5365 2.438434 GTGGATGGCCGGAAGTGG 60.438 66.667 5.05 0.00 36.79 4.00
3624 5366 1.746615 CTGTGGATGGCCGGAAGTG 60.747 63.158 5.05 0.00 36.79 3.16
3625 5367 2.671070 CTGTGGATGGCCGGAAGT 59.329 61.111 5.05 0.00 36.79 3.01
3626 5368 2.124570 CCTGTGGATGGCCGGAAG 60.125 66.667 5.05 0.00 36.79 3.46
3627 5369 4.424711 GCCTGTGGATGGCCGGAA 62.425 66.667 5.05 0.00 44.32 4.30
3633 5375 1.001764 TCTTGCAGCCTGTGGATGG 60.002 57.895 3.99 0.00 39.79 3.51
3635 5377 0.403271 AACTCTTGCAGCCTGTGGAT 59.597 50.000 0.00 0.00 0.00 3.41
3654 5396 2.350676 CGCTGTTGCTACTCATTTTGCA 60.351 45.455 0.00 0.00 36.97 4.08
3659 5401 0.321564 TGGCGCTGTTGCTACTCATT 60.322 50.000 7.64 0.00 36.97 2.57
3661 5403 1.374631 CTGGCGCTGTTGCTACTCA 60.375 57.895 7.64 0.00 36.97 3.41
3662 5404 2.103042 CCTGGCGCTGTTGCTACTC 61.103 63.158 7.64 0.00 36.97 2.59
3664 5406 2.358737 ACCTGGCGCTGTTGCTAC 60.359 61.111 7.64 0.00 36.97 3.58
3667 5409 1.097547 ATATGACCTGGCGCTGTTGC 61.098 55.000 7.64 0.00 0.00 4.17
3669 5411 0.541392 TCATATGACCTGGCGCTGTT 59.459 50.000 7.64 0.00 0.00 3.16
3670 5412 0.541392 TTCATATGACCTGGCGCTGT 59.459 50.000 7.64 1.77 0.00 4.40
3672 5414 0.541392 TGTTCATATGACCTGGCGCT 59.459 50.000 7.64 0.00 0.00 5.92
3673 5415 1.378531 TTGTTCATATGACCTGGCGC 58.621 50.000 4.48 0.00 0.00 6.53
3675 5417 4.380867 CCTGTTTTGTTCATATGACCTGGC 60.381 45.833 4.48 0.00 0.00 4.85
3676 5418 5.009631 TCCTGTTTTGTTCATATGACCTGG 58.990 41.667 4.48 0.00 0.00 4.45
3678 5420 6.068010 TGTTCCTGTTTTGTTCATATGACCT 58.932 36.000 4.48 0.00 0.00 3.85
3679 5421 6.325919 TGTTCCTGTTTTGTTCATATGACC 57.674 37.500 4.48 0.00 0.00 4.02
3680 5422 5.858581 GCTGTTCCTGTTTTGTTCATATGAC 59.141 40.000 4.48 1.77 0.00 3.06
3681 5423 5.048083 GGCTGTTCCTGTTTTGTTCATATGA 60.048 40.000 0.00 0.00 0.00 2.15
3682 5424 5.163513 GGCTGTTCCTGTTTTGTTCATATG 58.836 41.667 0.00 0.00 0.00 1.78
3683 5425 4.220602 GGGCTGTTCCTGTTTTGTTCATAT 59.779 41.667 0.00 0.00 34.39 1.78
3684 5426 3.572255 GGGCTGTTCCTGTTTTGTTCATA 59.428 43.478 0.00 0.00 34.39 2.15
3685 5427 2.365293 GGGCTGTTCCTGTTTTGTTCAT 59.635 45.455 0.00 0.00 34.39 2.57
3686 5428 1.754226 GGGCTGTTCCTGTTTTGTTCA 59.246 47.619 0.00 0.00 34.39 3.18
3688 5430 0.744281 CGGGCTGTTCCTGTTTTGTT 59.256 50.000 0.00 0.00 36.43 2.83
3689 5431 1.106944 CCGGGCTGTTCCTGTTTTGT 61.107 55.000 0.00 0.00 39.73 2.83
3690 5432 1.659794 CCGGGCTGTTCCTGTTTTG 59.340 57.895 0.00 0.00 39.73 2.44
3691 5433 1.530655 CCCGGGCTGTTCCTGTTTT 60.531 57.895 8.08 0.00 39.73 2.43
3692 5434 2.115266 CCCGGGCTGTTCCTGTTT 59.885 61.111 8.08 0.00 39.73 2.83
3693 5435 3.966543 CCCCGGGCTGTTCCTGTT 61.967 66.667 17.73 0.00 39.73 3.16
3695 5437 4.722700 CACCCCGGGCTGTTCCTG 62.723 72.222 17.73 0.15 41.11 3.86
3698 5440 4.280019 AACCACCCCGGGCTGTTC 62.280 66.667 17.73 0.00 40.22 3.18
3705 5517 0.467659 TACAAAACCAACCACCCCGG 60.468 55.000 0.00 0.00 42.50 5.73
3707 5519 4.021807 CAGTATTACAAAACCAACCACCCC 60.022 45.833 0.00 0.00 0.00 4.95
3710 5522 4.552355 GGCAGTATTACAAAACCAACCAC 58.448 43.478 0.00 0.00 0.00 4.16
3726 5538 2.530460 AGCATCCAAAATGGGCAGTA 57.470 45.000 0.00 0.00 38.32 2.74
3730 5542 2.360165 CAGAGTAGCATCCAAAATGGGC 59.640 50.000 0.00 0.00 38.32 5.36
3731 5543 3.624777 ACAGAGTAGCATCCAAAATGGG 58.375 45.455 0.00 0.00 38.32 4.00
3732 5544 4.946157 AGAACAGAGTAGCATCCAAAATGG 59.054 41.667 0.00 0.00 39.43 3.16
3733 5545 6.506500 AAGAACAGAGTAGCATCCAAAATG 57.493 37.500 0.00 0.00 0.00 2.32
3734 5546 6.571150 GCAAAGAACAGAGTAGCATCCAAAAT 60.571 38.462 0.00 0.00 0.00 1.82
3736 5548 4.216257 GCAAAGAACAGAGTAGCATCCAAA 59.784 41.667 0.00 0.00 0.00 3.28
3737 5549 3.753272 GCAAAGAACAGAGTAGCATCCAA 59.247 43.478 0.00 0.00 0.00 3.53
3738 5550 3.008375 AGCAAAGAACAGAGTAGCATCCA 59.992 43.478 0.00 0.00 0.00 3.41
3739 5551 3.604582 AGCAAAGAACAGAGTAGCATCC 58.395 45.455 0.00 0.00 0.00 3.51
3740 5552 4.502962 AGAGCAAAGAACAGAGTAGCATC 58.497 43.478 0.00 0.00 0.00 3.91
3741 5553 4.550076 AGAGCAAAGAACAGAGTAGCAT 57.450 40.909 0.00 0.00 0.00 3.79
3745 5557 6.992123 TGAAATGAAGAGCAAAGAACAGAGTA 59.008 34.615 0.00 0.00 0.00 2.59
3746 5558 5.824624 TGAAATGAAGAGCAAAGAACAGAGT 59.175 36.000 0.00 0.00 0.00 3.24
3749 5561 6.069684 AGTGAAATGAAGAGCAAAGAACAG 57.930 37.500 0.00 0.00 0.00 3.16
3759 5588 5.048224 ACAGAATGGCAAGTGAAATGAAGAG 60.048 40.000 0.00 0.00 43.62 2.85
3782 5611 8.579682 AGAAAAATAACAATGAACTGCTCAAC 57.420 30.769 0.00 0.00 37.67 3.18
3788 5617 8.971321 CAGTGGAAGAAAAATAACAATGAACTG 58.029 33.333 0.00 0.00 0.00 3.16
3790 5619 7.095649 GCCAGTGGAAGAAAAATAACAATGAAC 60.096 37.037 15.20 0.00 0.00 3.18
3805 5634 2.829384 GGTGTGGGCCAGTGGAAGA 61.829 63.158 15.20 0.00 0.00 2.87
3806 5635 2.282462 GGTGTGGGCCAGTGGAAG 60.282 66.667 15.20 0.00 0.00 3.46
3817 5646 4.657824 AAGACGGTCGCGGTGTGG 62.658 66.667 6.13 0.00 0.00 4.17
3818 5647 3.103911 GAAGACGGTCGCGGTGTG 61.104 66.667 6.13 0.00 0.00 3.82
3819 5648 4.695231 CGAAGACGGTCGCGGTGT 62.695 66.667 6.13 1.67 33.66 4.16
3820 5649 4.695231 ACGAAGACGGTCGCGGTG 62.695 66.667 23.12 0.00 45.00 4.94
3821 5650 3.886329 GAACGAAGACGGTCGCGGT 62.886 63.158 23.12 19.45 46.04 5.68
3822 5651 3.170585 GAACGAAGACGGTCGCGG 61.171 66.667 23.12 11.08 46.04 6.46
3844 5673 2.873604 CGACGGTCGCGGTGTTTTT 61.874 57.895 18.36 0.00 31.14 1.94
3845 5674 3.332409 CGACGGTCGCGGTGTTTT 61.332 61.111 18.36 0.00 31.14 2.43
3846 5675 3.562779 ATCGACGGTCGCGGTGTTT 62.563 57.895 24.76 1.68 40.21 2.83
3847 5676 3.562779 AATCGACGGTCGCGGTGTT 62.563 57.895 24.76 11.29 40.21 3.32
3852 5681 2.642249 TAGCTCAATCGACGGTCGCG 62.642 60.000 24.76 15.31 40.21 5.87
3856 5685 1.673808 GGGGTAGCTCAATCGACGGT 61.674 60.000 0.00 0.00 0.00 4.83
3859 5688 1.139058 ACATGGGGTAGCTCAATCGAC 59.861 52.381 0.00 0.00 0.00 4.20
3862 5691 3.567478 AGAACATGGGGTAGCTCAATC 57.433 47.619 0.00 0.00 0.00 2.67
3873 5702 2.756760 CCAGATCACCAAAGAACATGGG 59.243 50.000 0.00 0.00 42.48 4.00
3892 5721 2.382882 TGGTGCATGTTGTTTTCTCCA 58.617 42.857 0.00 0.00 0.00 3.86
3919 5748 3.004734 GTGCCTGCTGCTAAGAAGAAAAA 59.995 43.478 0.00 0.00 42.00 1.94
3920 5749 2.554032 GTGCCTGCTGCTAAGAAGAAAA 59.446 45.455 0.00 0.00 42.00 2.29
3921 5750 2.154462 GTGCCTGCTGCTAAGAAGAAA 58.846 47.619 0.00 0.00 42.00 2.52
3922 5751 1.611673 GGTGCCTGCTGCTAAGAAGAA 60.612 52.381 0.00 0.00 42.00 2.52
3923 5752 0.036010 GGTGCCTGCTGCTAAGAAGA 60.036 55.000 0.00 0.00 42.00 2.87
3924 5753 1.364626 CGGTGCCTGCTGCTAAGAAG 61.365 60.000 0.00 0.00 42.00 2.85
3925 5754 1.375908 CGGTGCCTGCTGCTAAGAA 60.376 57.895 0.00 0.00 42.00 2.52
3926 5755 2.265739 CGGTGCCTGCTGCTAAGA 59.734 61.111 0.00 0.00 42.00 2.10
3973 5802 1.204467 GGCGGCATTGATCCTCAAAAA 59.796 47.619 3.07 0.00 40.12 1.94
3974 5803 0.817013 GGCGGCATTGATCCTCAAAA 59.183 50.000 3.07 0.00 40.12 2.44
3975 5804 0.323269 TGGCGGCATTGATCCTCAAA 60.323 50.000 7.97 0.00 40.12 2.69
3976 5805 1.031571 GTGGCGGCATTGATCCTCAA 61.032 55.000 17.19 0.00 41.09 3.02
3977 5806 1.451927 GTGGCGGCATTGATCCTCA 60.452 57.895 17.19 0.00 0.00 3.86
3978 5807 0.106708 TAGTGGCGGCATTGATCCTC 59.893 55.000 17.19 0.00 0.00 3.71
3979 5808 0.767375 ATAGTGGCGGCATTGATCCT 59.233 50.000 17.19 8.98 0.00 3.24
3980 5809 0.877071 CATAGTGGCGGCATTGATCC 59.123 55.000 17.19 0.00 0.00 3.36
3981 5810 1.597742 ACATAGTGGCGGCATTGATC 58.402 50.000 17.19 0.73 0.00 2.92
3982 5811 2.057137 AACATAGTGGCGGCATTGAT 57.943 45.000 17.19 6.15 0.00 2.57
3983 5812 2.093181 AGTAACATAGTGGCGGCATTGA 60.093 45.455 17.19 3.62 0.00 2.57
3984 5813 2.288666 AGTAACATAGTGGCGGCATTG 58.711 47.619 17.19 15.76 0.00 2.82
3985 5814 2.710096 AGTAACATAGTGGCGGCATT 57.290 45.000 17.19 14.65 0.00 3.56
3986 5815 2.710096 AAGTAACATAGTGGCGGCAT 57.290 45.000 17.19 7.05 0.00 4.40
3987 5816 3.613494 TTAAGTAACATAGTGGCGGCA 57.387 42.857 7.97 7.97 0.00 5.69
3988 5817 4.334481 ACATTTAAGTAACATAGTGGCGGC 59.666 41.667 0.00 0.00 0.00 6.53
3989 5818 6.292703 GCTACATTTAAGTAACATAGTGGCGG 60.293 42.308 0.00 0.00 0.00 6.13
3990 5819 6.256975 TGCTACATTTAAGTAACATAGTGGCG 59.743 38.462 0.00 0.00 35.40 5.69
3991 5820 7.254795 CCTGCTACATTTAAGTAACATAGTGGC 60.255 40.741 0.00 0.00 33.62 5.01
3992 5821 7.226720 CCCTGCTACATTTAAGTAACATAGTGG 59.773 40.741 0.00 0.00 0.00 4.00
3993 5822 7.985184 TCCCTGCTACATTTAAGTAACATAGTG 59.015 37.037 0.00 0.00 0.00 2.74
3994 5823 8.086143 TCCCTGCTACATTTAAGTAACATAGT 57.914 34.615 0.00 0.00 0.00 2.12
3995 5824 8.958119 TTCCCTGCTACATTTAAGTAACATAG 57.042 34.615 0.00 0.00 0.00 2.23
3996 5825 9.914834 AATTCCCTGCTACATTTAAGTAACATA 57.085 29.630 0.00 0.00 0.00 2.29
3997 5826 8.823220 AATTCCCTGCTACATTTAAGTAACAT 57.177 30.769 0.00 0.00 0.00 2.71
3998 5827 8.644374 AAATTCCCTGCTACATTTAAGTAACA 57.356 30.769 0.00 0.00 0.00 2.41
3999 5828 7.908601 CGAAATTCCCTGCTACATTTAAGTAAC 59.091 37.037 0.00 0.00 0.00 2.50
4000 5829 7.608761 ACGAAATTCCCTGCTACATTTAAGTAA 59.391 33.333 0.00 0.00 0.00 2.24
4001 5830 7.107542 ACGAAATTCCCTGCTACATTTAAGTA 58.892 34.615 0.00 0.00 0.00 2.24
4002 5831 5.944007 ACGAAATTCCCTGCTACATTTAAGT 59.056 36.000 0.00 0.00 0.00 2.24
4003 5832 6.093495 TGACGAAATTCCCTGCTACATTTAAG 59.907 38.462 0.00 0.00 0.00 1.85
4004 5833 5.941058 TGACGAAATTCCCTGCTACATTTAA 59.059 36.000 0.00 0.00 0.00 1.52
4005 5834 5.492895 TGACGAAATTCCCTGCTACATTTA 58.507 37.500 0.00 0.00 0.00 1.40
4006 5835 4.331968 TGACGAAATTCCCTGCTACATTT 58.668 39.130 0.00 0.00 0.00 2.32
4007 5836 3.941483 CTGACGAAATTCCCTGCTACATT 59.059 43.478 0.00 0.00 0.00 2.71
4008 5837 3.197766 TCTGACGAAATTCCCTGCTACAT 59.802 43.478 0.00 0.00 0.00 2.29
4009 5838 2.565391 TCTGACGAAATTCCCTGCTACA 59.435 45.455 0.00 0.00 0.00 2.74
4010 5839 3.247006 TCTGACGAAATTCCCTGCTAC 57.753 47.619 0.00 0.00 0.00 3.58
4011 5840 3.973206 TTCTGACGAAATTCCCTGCTA 57.027 42.857 0.00 0.00 0.00 3.49
4012 5841 2.859165 TTCTGACGAAATTCCCTGCT 57.141 45.000 0.00 0.00 0.00 4.24
4013 5842 5.560966 TTATTTCTGACGAAATTCCCTGC 57.439 39.130 5.72 0.00 45.18 4.85
4014 5843 7.254932 GGAGATTATTTCTGACGAAATTCCCTG 60.255 40.741 5.72 0.00 45.18 4.45
4015 5844 6.768381 GGAGATTATTTCTGACGAAATTCCCT 59.232 38.462 5.72 1.97 45.18 4.20
4016 5845 6.542370 TGGAGATTATTTCTGACGAAATTCCC 59.458 38.462 5.72 4.05 45.18 3.97
4017 5846 7.495934 TCTGGAGATTATTTCTGACGAAATTCC 59.504 37.037 5.72 7.24 45.18 3.01
4018 5847 8.425577 TCTGGAGATTATTTCTGACGAAATTC 57.574 34.615 5.72 0.01 45.18 2.17
4019 5848 8.792830 TTCTGGAGATTATTTCTGACGAAATT 57.207 30.769 5.72 0.00 45.18 1.82
4021 5850 9.884636 TTATTCTGGAGATTATTTCTGACGAAA 57.115 29.630 0.00 0.00 42.83 3.46
4022 5851 9.314321 GTTATTCTGGAGATTATTTCTGACGAA 57.686 33.333 0.00 0.00 33.74 3.85
4023 5852 8.696374 AGTTATTCTGGAGATTATTTCTGACGA 58.304 33.333 0.00 0.00 33.74 4.20
4024 5853 8.879342 AGTTATTCTGGAGATTATTTCTGACG 57.121 34.615 0.00 0.00 33.74 4.35



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.