Multiple sequence alignment - TraesCS2A01G480100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G480100 chr2A 100.000 3710 0 0 1 3710 718118209 718121918 0.000000e+00 6852.0
1 TraesCS2A01G480100 chr2A 94.845 776 35 2 219 991 627922268 627921495 0.000000e+00 1206.0
2 TraesCS2A01G480100 chr2B 89.960 2759 196 35 986 3694 699108867 699111594 0.000000e+00 3485.0
3 TraesCS2A01G480100 chr2B 94.419 215 12 0 1 215 699108140 699108354 7.680000e-87 331.0
4 TraesCS2A01G480100 chr2D 95.536 1949 74 7 986 2925 580193222 580195166 0.000000e+00 3105.0
5 TraesCS2A01G480100 chr2D 86.444 509 61 3 3029 3532 580195215 580195720 5.420000e-153 551.0
6 TraesCS2A01G480100 chr2D 100.000 215 0 0 1 215 580192495 580192709 7.470000e-107 398.0
7 TraesCS2A01G480100 chr2D 79.617 574 79 15 2462 3027 580224630 580225173 9.730000e-101 377.0
8 TraesCS2A01G480100 chr4D 83.664 1763 249 19 986 2718 64539120 64540873 0.000000e+00 1624.0
9 TraesCS2A01G480100 chr4D 80.447 1432 216 29 1338 2732 64349333 64347929 0.000000e+00 1035.0
10 TraesCS2A01G480100 chr4B 83.617 1764 248 20 986 2718 95070354 95072107 0.000000e+00 1618.0
11 TraesCS2A01G480100 chr4B 80.442 1989 322 38 986 2930 94790471 94788506 0.000000e+00 1456.0
12 TraesCS2A01G480100 chr4A 83.607 1763 250 19 986 2718 531679420 531677667 0.000000e+00 1618.0
13 TraesCS2A01G480100 chr4A 83.710 1639 243 12 986 2602 531385513 531383877 0.000000e+00 1526.0
14 TraesCS2A01G480100 chr4A 82.656 1649 242 23 991 2616 532216310 532217937 0.000000e+00 1421.0
15 TraesCS2A01G480100 chr4A 94.352 779 38 2 219 991 617499914 617500692 0.000000e+00 1190.0
16 TraesCS2A01G480100 chr4A 82.324 413 70 3 986 1397 626299836 626299426 4.560000e-94 355.0
17 TraesCS2A01G480100 chr4A 90.000 50 4 1 3296 3344 531383296 531383247 3.090000e-06 63.9
18 TraesCS2A01G480100 chr3A 97.290 775 19 2 217 991 336889923 336889151 0.000000e+00 1314.0
19 TraesCS2A01G480100 chr3A 95.544 763 28 3 219 976 691494634 691495395 0.000000e+00 1216.0
20 TraesCS2A01G480100 chr3A 94.567 773 39 3 219 991 695539266 695538497 0.000000e+00 1192.0
21 TraesCS2A01G480100 chr7B 96.895 773 21 3 219 991 635924954 635924185 0.000000e+00 1291.0
22 TraesCS2A01G480100 chr5B 94.437 773 41 2 219 991 246143213 246143983 0.000000e+00 1188.0
23 TraesCS2A01G480100 chr3B 94.315 774 41 3 219 991 581122749 581121978 0.000000e+00 1182.0
24 TraesCS2A01G480100 chr3B 78.099 1557 300 31 1043 2566 730310655 730312203 0.000000e+00 948.0
25 TraesCS2A01G480100 chr7A 94.194 775 36 5 219 991 546587428 546588195 0.000000e+00 1173.0
26 TraesCS2A01G480100 chr3D 78.725 1537 290 26 1061 2566 550669420 550670950 0.000000e+00 992.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G480100 chr2A 718118209 718121918 3709 False 6852.000000 6852 100.000000 1 3710 1 chr2A.!!$F1 3709
1 TraesCS2A01G480100 chr2A 627921495 627922268 773 True 1206.000000 1206 94.845000 219 991 1 chr2A.!!$R1 772
2 TraesCS2A01G480100 chr2B 699108140 699111594 3454 False 1908.000000 3485 92.189500 1 3694 2 chr2B.!!$F1 3693
3 TraesCS2A01G480100 chr2D 580192495 580195720 3225 False 1351.333333 3105 93.993333 1 3532 3 chr2D.!!$F2 3531
4 TraesCS2A01G480100 chr2D 580224630 580225173 543 False 377.000000 377 79.617000 2462 3027 1 chr2D.!!$F1 565
5 TraesCS2A01G480100 chr4D 64539120 64540873 1753 False 1624.000000 1624 83.664000 986 2718 1 chr4D.!!$F1 1732
6 TraesCS2A01G480100 chr4D 64347929 64349333 1404 True 1035.000000 1035 80.447000 1338 2732 1 chr4D.!!$R1 1394
7 TraesCS2A01G480100 chr4B 95070354 95072107 1753 False 1618.000000 1618 83.617000 986 2718 1 chr4B.!!$F1 1732
8 TraesCS2A01G480100 chr4B 94788506 94790471 1965 True 1456.000000 1456 80.442000 986 2930 1 chr4B.!!$R1 1944
9 TraesCS2A01G480100 chr4A 531677667 531679420 1753 True 1618.000000 1618 83.607000 986 2718 1 chr4A.!!$R1 1732
10 TraesCS2A01G480100 chr4A 532216310 532217937 1627 False 1421.000000 1421 82.656000 991 2616 1 chr4A.!!$F1 1625
11 TraesCS2A01G480100 chr4A 617499914 617500692 778 False 1190.000000 1190 94.352000 219 991 1 chr4A.!!$F2 772
12 TraesCS2A01G480100 chr4A 531383247 531385513 2266 True 794.950000 1526 86.855000 986 3344 2 chr4A.!!$R3 2358
13 TraesCS2A01G480100 chr3A 336889151 336889923 772 True 1314.000000 1314 97.290000 217 991 1 chr3A.!!$R1 774
14 TraesCS2A01G480100 chr3A 691494634 691495395 761 False 1216.000000 1216 95.544000 219 976 1 chr3A.!!$F1 757
15 TraesCS2A01G480100 chr3A 695538497 695539266 769 True 1192.000000 1192 94.567000 219 991 1 chr3A.!!$R2 772
16 TraesCS2A01G480100 chr7B 635924185 635924954 769 True 1291.000000 1291 96.895000 219 991 1 chr7B.!!$R1 772
17 TraesCS2A01G480100 chr5B 246143213 246143983 770 False 1188.000000 1188 94.437000 219 991 1 chr5B.!!$F1 772
18 TraesCS2A01G480100 chr3B 581121978 581122749 771 True 1182.000000 1182 94.315000 219 991 1 chr3B.!!$R1 772
19 TraesCS2A01G480100 chr3B 730310655 730312203 1548 False 948.000000 948 78.099000 1043 2566 1 chr3B.!!$F1 1523
20 TraesCS2A01G480100 chr7A 546587428 546588195 767 False 1173.000000 1173 94.194000 219 991 1 chr7A.!!$F1 772
21 TraesCS2A01G480100 chr3D 550669420 550670950 1530 False 992.000000 992 78.725000 1061 2566 1 chr3D.!!$F1 1505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 216 1.057275 TATCAGGCATGGGCGGGTTA 61.057 55.0 0.00 0.0 42.47 2.85 F
1472 2011 0.249868 TGGAAAGAGGACACTGCACG 60.250 55.0 0.00 0.0 0.00 5.34 F
1930 2476 1.589716 GGCCGAACAGCTGCAGAAAT 61.590 55.0 20.43 0.0 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1917 2463 1.890489 TGCATCAATTTCTGCAGCTGT 59.110 42.857 16.64 0.00 43.11 4.40 R
2339 2897 0.730840 ACTGACATCATGCATGCACG 59.269 50.000 25.37 16.65 35.65 5.34 R
3664 4351 0.322277 CAGGCTGTTCTGCTGTGGAT 60.322 55.000 6.28 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
215 216 1.057275 TATCAGGCATGGGCGGGTTA 61.057 55.000 0.00 0.00 42.47 2.85
617 900 6.942576 ACTTGGCTAAAAGAAGATTTCTAGCA 59.057 34.615 11.85 0.35 39.51 3.49
902 1420 2.437359 GGAGCTGCGCAACCAGAT 60.437 61.111 13.05 0.00 34.77 2.90
910 1428 1.712081 CGCAACCAGATCTCAAGCG 59.288 57.895 12.13 12.13 37.68 4.68
1333 1854 3.255397 AGCTTGGCAGGGTCAGCT 61.255 61.111 4.83 4.83 0.00 4.24
1419 1940 4.490959 GCTTCAACAGATGATTACGACACG 60.491 45.833 0.00 0.00 38.03 4.49
1472 2011 0.249868 TGGAAAGAGGACACTGCACG 60.250 55.000 0.00 0.00 0.00 5.34
1860 2406 1.728971 CAAGCACCTAAAGAGCTGTCG 59.271 52.381 0.00 0.00 38.86 4.35
1917 2463 1.675310 CAGCAATGACCTGGCCGAA 60.675 57.895 0.00 0.00 0.00 4.30
1930 2476 1.589716 GGCCGAACAGCTGCAGAAAT 61.590 55.000 20.43 0.00 0.00 2.17
1994 2540 3.489738 GCTGAGTGTGCAAATCTGTTTGT 60.490 43.478 0.00 0.00 45.14 2.83
2232 2784 2.363680 AGATCCACTGGAGATACTTGCG 59.636 50.000 3.62 0.00 34.05 4.85
2339 2897 7.660208 TCCAAACCTGAAGACACTTATCTTAAC 59.340 37.037 0.00 0.00 39.08 2.01
2376 2934 4.560128 TCAGTGAGCTAAACATCAGTGAC 58.440 43.478 8.29 0.00 46.08 3.67
2684 3258 7.878547 TTGTGATTATTCATACCATCAGCAA 57.121 32.000 0.00 0.00 33.56 3.91
2690 3264 9.754382 GATTATTCATACCATCAGCAACATTTT 57.246 29.630 0.00 0.00 0.00 1.82
2744 3333 3.308401 AGTTTGGTTTCCATTGCCTTCT 58.692 40.909 0.00 0.00 31.53 2.85
2747 3336 3.806949 TGGTTTCCATTGCCTTCTAGT 57.193 42.857 0.00 0.00 0.00 2.57
2774 3388 5.105513 CCCCCATCTGGTTTTATGTTGTTAC 60.106 44.000 0.00 0.00 0.00 2.50
3046 3686 2.038952 AGCAGCACTTATGTGTCTTCCA 59.961 45.455 10.17 0.00 45.44 3.53
3065 3705 1.918800 CGGGAGTTTGGGTCCTCCT 60.919 63.158 5.73 0.00 45.46 3.69
3084 3728 3.070159 TCCTGTTTGAAGGAGACAGACTG 59.930 47.826 0.00 0.00 41.60 3.51
3123 3770 8.127150 TCATCTTGATATGATGTCGGATACTT 57.873 34.615 0.00 0.00 41.30 2.24
3134 3781 4.607239 TGTCGGATACTTTAGGGAGAAGT 58.393 43.478 0.00 0.00 40.28 3.01
3144 3791 6.896883 ACTTTAGGGAGAAGTAACACAAAGT 58.103 36.000 0.00 0.00 35.68 2.66
3145 3792 6.766467 ACTTTAGGGAGAAGTAACACAAAGTG 59.234 38.462 0.00 0.00 35.68 3.16
3146 3793 4.086706 AGGGAGAAGTAACACAAAGTGG 57.913 45.455 1.93 0.00 37.94 4.00
3169 3816 9.398170 GTGGTATATGCATTTTATGAACATGTC 57.602 33.333 3.54 0.00 0.00 3.06
3188 3835 7.795047 ACATGTCCTCTATGTTGACAATATGA 58.205 34.615 7.62 3.21 41.85 2.15
3189 3836 8.435187 ACATGTCCTCTATGTTGACAATATGAT 58.565 33.333 7.62 0.00 41.85 2.45
3262 3914 1.755179 ATCAGGGGAAATTGCAGTCG 58.245 50.000 0.00 0.00 0.00 4.18
3276 3928 2.226200 TGCAGTCGGAAATGTCAATGTG 59.774 45.455 0.00 0.00 0.00 3.21
3278 3930 2.162208 CAGTCGGAAATGTCAATGTGGG 59.838 50.000 0.00 0.00 0.00 4.61
3297 3949 0.808755 GTATGTTGTTTCCTGCCCCG 59.191 55.000 0.00 0.00 0.00 5.73
3420 4081 6.010294 GCAATAGCAATGCAATATCTGTCT 57.990 37.500 8.35 0.00 43.29 3.41
3428 4089 6.976349 GCAATGCAATATCTGTCTTTTCATGA 59.024 34.615 0.00 0.00 0.00 3.07
3449 4110 3.758554 GACAGTTATGGTGGTCTGCATTT 59.241 43.478 0.00 0.00 0.00 2.32
3553 4225 1.959226 CACCTGGTGAACCGAACCG 60.959 63.158 22.33 0.00 40.86 4.44
3555 4227 1.070105 CCTGGTGAACCGAACCGAA 59.930 57.895 0.00 0.00 40.86 4.30
3556 4228 1.226030 CCTGGTGAACCGAACCGAAC 61.226 60.000 0.00 0.00 40.86 3.95
3557 4229 1.226030 CTGGTGAACCGAACCGAACC 61.226 60.000 0.00 0.00 40.86 3.62
3558 4230 1.070275 GGTGAACCGAACCGAACCT 59.930 57.895 0.00 0.00 0.00 3.50
3559 4231 0.318120 GGTGAACCGAACCGAACCTA 59.682 55.000 0.00 0.00 0.00 3.08
3560 4232 1.066645 GGTGAACCGAACCGAACCTAT 60.067 52.381 0.00 0.00 0.00 2.57
3561 4233 2.613725 GGTGAACCGAACCGAACCTATT 60.614 50.000 0.00 0.00 0.00 1.73
3563 4235 4.244862 GTGAACCGAACCGAACCTATTAA 58.755 43.478 0.00 0.00 0.00 1.40
3564 4236 4.872124 GTGAACCGAACCGAACCTATTAAT 59.128 41.667 0.00 0.00 0.00 1.40
3565 4237 5.006068 GTGAACCGAACCGAACCTATTAATC 59.994 44.000 0.00 0.00 0.00 1.75
3567 4239 3.451902 ACCGAACCGAACCTATTAATCCA 59.548 43.478 0.00 0.00 0.00 3.41
3568 4240 3.805971 CCGAACCGAACCTATTAATCCAC 59.194 47.826 0.00 0.00 0.00 4.02
3569 4241 4.435425 CGAACCGAACCTATTAATCCACA 58.565 43.478 0.00 0.00 0.00 4.17
3570 4242 4.269363 CGAACCGAACCTATTAATCCACAC 59.731 45.833 0.00 0.00 0.00 3.82
3571 4243 4.146745 ACCGAACCTATTAATCCACACC 57.853 45.455 0.00 0.00 0.00 4.16
3572 4244 3.118149 ACCGAACCTATTAATCCACACCC 60.118 47.826 0.00 0.00 0.00 4.61
3584 4256 1.494721 TCCACACCCTTTCTTGCTCTT 59.505 47.619 0.00 0.00 0.00 2.85
3586 4258 2.695147 CCACACCCTTTCTTGCTCTTTT 59.305 45.455 0.00 0.00 0.00 2.27
3593 4265 4.053983 CCTTTCTTGCTCTTTTGCCTTTC 58.946 43.478 0.00 0.00 0.00 2.62
3596 4283 4.574599 TCTTGCTCTTTTGCCTTTCTTC 57.425 40.909 0.00 0.00 0.00 2.87
3602 4289 4.202151 GCTCTTTTGCCTTTCTTCTTTGGA 60.202 41.667 0.00 0.00 0.00 3.53
3609 4296 5.195940 TGCCTTTCTTCTTTGGATGATAGG 58.804 41.667 11.22 11.22 42.29 2.57
3610 4297 4.582240 GCCTTTCTTCTTTGGATGATAGGG 59.418 45.833 14.78 0.00 41.07 3.53
3620 4307 2.369860 TGGATGATAGGGTAGCTTGCAG 59.630 50.000 0.00 0.00 0.00 4.41
3632 4319 2.476821 AGCTTGCAGTTTTGTTCATGC 58.523 42.857 0.00 0.00 39.14 4.06
3638 4325 3.088194 CAGTTTTGTTCATGCTGCAGT 57.912 42.857 16.64 0.00 0.00 4.40
3648 4335 0.392193 ATGCTGCAGTCAGTGGCTAC 60.392 55.000 16.64 0.00 42.29 3.58
3658 4345 2.738846 GTCAGTGGCTACTCACATGTTG 59.261 50.000 0.00 0.00 39.93 3.33
3664 4351 2.749076 GGCTACTCACATGTTGCATTGA 59.251 45.455 0.00 0.00 39.68 2.57
3665 4352 3.379372 GGCTACTCACATGTTGCATTGAT 59.621 43.478 0.00 0.00 39.68 2.57
3681 4373 0.321919 TGATCCACAGCAGAACAGCC 60.322 55.000 0.00 0.00 34.23 4.85
3694 4386 1.812686 AACAGCCTGCATGCAGTTGG 61.813 55.000 38.22 28.35 39.18 3.77
3695 4387 3.379445 AGCCTGCATGCAGTTGGC 61.379 61.111 38.22 34.89 42.15 4.52
3696 4388 3.379445 GCCTGCATGCAGTTGGCT 61.379 61.111 38.22 0.00 45.15 4.75
3697 4389 2.882876 CCTGCATGCAGTTGGCTC 59.117 61.111 38.22 0.51 45.15 4.70
3698 4390 2.707849 CCTGCATGCAGTTGGCTCC 61.708 63.158 38.22 0.00 45.15 4.70
3699 4391 3.047718 CTGCATGCAGTTGGCTCCG 62.048 63.158 34.76 11.23 45.15 4.63
3700 4392 3.818787 GCATGCAGTTGGCTCCGG 61.819 66.667 14.21 0.00 45.15 5.14
3701 4393 3.818787 CATGCAGTTGGCTCCGGC 61.819 66.667 0.00 0.00 45.15 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
215 216 6.071728 ACGATCAGCTTCCAAATCAAGAAATT 60.072 34.615 0.00 0.00 0.00 1.82
902 1420 1.873591 GCCAAAAAGTCTCGCTTGAGA 59.126 47.619 0.00 0.00 46.41 3.27
910 1428 2.296190 ACCAAATCCGCCAAAAAGTCTC 59.704 45.455 0.00 0.00 0.00 3.36
1419 1940 4.799678 ACAGACGACGAATATCCATCATC 58.200 43.478 0.00 0.00 0.00 2.92
1917 2463 1.890489 TGCATCAATTTCTGCAGCTGT 59.110 42.857 16.64 0.00 43.11 4.40
1924 2470 7.749570 CAGACTTCTTAGTTGCATCAATTTCTG 59.250 37.037 0.00 0.00 33.84 3.02
1930 2476 4.756642 CCACAGACTTCTTAGTTGCATCAA 59.243 41.667 0.00 0.00 33.84 2.57
1994 2540 3.626930 AGCGGCATATTTGAAAGGGTAA 58.373 40.909 1.45 0.00 0.00 2.85
2339 2897 0.730840 ACTGACATCATGCATGCACG 59.269 50.000 25.37 16.65 35.65 5.34
2658 3231 8.467963 TGCTGATGGTATGAATAATCACAAAT 57.532 30.769 0.00 0.00 38.69 2.32
2671 3244 5.163663 ACCGTAAAATGTTGCTGATGGTATG 60.164 40.000 0.00 0.00 0.00 2.39
2675 3248 3.500982 CACCGTAAAATGTTGCTGATGG 58.499 45.455 0.00 0.00 0.00 3.51
2684 3258 6.995511 ACACATATAAGCACCGTAAAATGT 57.004 33.333 0.00 0.00 0.00 2.71
2744 3333 0.849094 AAACCAGATGGGGGCCACTA 60.849 55.000 7.61 0.00 42.91 2.74
2747 3336 1.014804 ATAAAACCAGATGGGGGCCA 58.985 50.000 4.39 0.00 42.91 5.36
2774 3388 7.922811 TGAAATCAGTACTAGCACATATGACTG 59.077 37.037 10.38 10.55 35.30 3.51
2927 3557 3.119743 GCTGCTGAAATGACAGTGCAATA 60.120 43.478 0.00 0.00 39.73 1.90
2931 3561 0.879765 AGCTGCTGAAATGACAGTGC 59.120 50.000 0.00 0.00 39.73 4.40
2958 3598 4.556699 GCACCTAATCAGGAAAACACACAC 60.557 45.833 0.00 0.00 45.91 3.82
3046 3686 2.222013 GGAGGACCCAAACTCCCGT 61.222 63.158 0.00 0.00 46.01 5.28
3052 3692 2.358322 TCAAACAGGAGGACCCAAAC 57.642 50.000 0.00 0.00 37.41 2.93
3065 3705 2.771943 ACCAGTCTGTCTCCTTCAAACA 59.228 45.455 0.00 0.00 0.00 2.83
3084 3728 9.903682 CATATCAAGATGAACCAAAATGATACC 57.096 33.333 0.00 0.00 0.00 2.73
3123 3770 5.131475 ACCACTTTGTGTTACTTCTCCCTAA 59.869 40.000 0.00 0.00 0.00 2.69
3144 3791 8.575589 GGACATGTTCATAAAATGCATATACCA 58.424 33.333 0.00 0.00 0.00 3.25
3145 3792 8.796475 AGGACATGTTCATAAAATGCATATACC 58.204 33.333 6.96 0.00 0.00 2.73
3146 3793 9.831737 GAGGACATGTTCATAAAATGCATATAC 57.168 33.333 6.96 0.00 0.00 1.47
3169 3816 5.121298 CCGCATCATATTGTCAACATAGAGG 59.879 44.000 0.00 0.00 0.00 3.69
3262 3914 5.047377 ACAACATACCCACATTGACATTTCC 60.047 40.000 0.00 0.00 0.00 3.13
3276 3928 1.182667 GGGCAGGAAACAACATACCC 58.817 55.000 0.00 0.00 0.00 3.69
3278 3930 0.808755 CGGGGCAGGAAACAACATAC 59.191 55.000 0.00 0.00 0.00 2.39
3297 3949 2.355209 CCTCTGAAGCAGGGACTTAACC 60.355 54.545 0.00 0.00 34.60 2.85
3363 4024 7.278868 CGATCCTTGTATCCTCTAAAATATGGC 59.721 40.741 0.00 0.00 0.00 4.40
3420 4081 5.473162 CAGACCACCATAACTGTCATGAAAA 59.527 40.000 0.00 0.00 0.00 2.29
3428 4089 3.439857 AATGCAGACCACCATAACTGT 57.560 42.857 0.00 0.00 33.57 3.55
3449 4110 9.513906 TTTACTCAAACAATACCAAGATGATCA 57.486 29.630 0.00 0.00 0.00 2.92
3503 4168 1.142060 TGTCCCCAACCACTAACTGTG 59.858 52.381 0.00 0.00 45.80 3.66
3553 4225 6.424032 AGAAAGGGTGTGGATTAATAGGTTC 58.576 40.000 0.00 0.00 0.00 3.62
3555 4227 6.187682 CAAGAAAGGGTGTGGATTAATAGGT 58.812 40.000 0.00 0.00 0.00 3.08
3556 4228 5.067805 GCAAGAAAGGGTGTGGATTAATAGG 59.932 44.000 0.00 0.00 0.00 2.57
3557 4229 5.888161 AGCAAGAAAGGGTGTGGATTAATAG 59.112 40.000 0.00 0.00 0.00 1.73
3558 4230 5.826643 AGCAAGAAAGGGTGTGGATTAATA 58.173 37.500 0.00 0.00 0.00 0.98
3559 4231 4.677182 AGCAAGAAAGGGTGTGGATTAAT 58.323 39.130 0.00 0.00 0.00 1.40
3560 4232 4.079253 GAGCAAGAAAGGGTGTGGATTAA 58.921 43.478 0.00 0.00 0.00 1.40
3561 4233 3.330701 AGAGCAAGAAAGGGTGTGGATTA 59.669 43.478 0.00 0.00 0.00 1.75
3563 4235 1.707427 AGAGCAAGAAAGGGTGTGGAT 59.293 47.619 0.00 0.00 0.00 3.41
3564 4236 1.140312 AGAGCAAGAAAGGGTGTGGA 58.860 50.000 0.00 0.00 0.00 4.02
3565 4237 1.986882 AAGAGCAAGAAAGGGTGTGG 58.013 50.000 0.00 0.00 0.00 4.17
3567 4239 2.101415 GCAAAAGAGCAAGAAAGGGTGT 59.899 45.455 0.00 0.00 0.00 4.16
3568 4240 2.546584 GGCAAAAGAGCAAGAAAGGGTG 60.547 50.000 0.00 0.00 35.83 4.61
3569 4241 1.688735 GGCAAAAGAGCAAGAAAGGGT 59.311 47.619 0.00 0.00 35.83 4.34
3570 4242 1.966354 AGGCAAAAGAGCAAGAAAGGG 59.034 47.619 0.00 0.00 35.83 3.95
3571 4243 3.740631 AAGGCAAAAGAGCAAGAAAGG 57.259 42.857 0.00 0.00 35.83 3.11
3572 4244 4.941657 AGAAAGGCAAAAGAGCAAGAAAG 58.058 39.130 0.00 0.00 35.83 2.62
3584 4256 6.153340 CCTATCATCCAAAGAAGAAAGGCAAA 59.847 38.462 0.00 0.00 0.00 3.68
3586 4258 5.195940 CCTATCATCCAAAGAAGAAAGGCA 58.804 41.667 0.00 0.00 0.00 4.75
3593 4265 5.559148 AGCTACCCTATCATCCAAAGAAG 57.441 43.478 0.00 0.00 0.00 2.85
3596 4283 3.817647 GCAAGCTACCCTATCATCCAAAG 59.182 47.826 0.00 0.00 0.00 2.77
3602 4289 4.510167 AAACTGCAAGCTACCCTATCAT 57.490 40.909 0.00 0.00 37.60 2.45
3609 4296 3.708563 TGAACAAAACTGCAAGCTACC 57.291 42.857 0.00 0.00 37.60 3.18
3610 4297 3.426525 GCATGAACAAAACTGCAAGCTAC 59.573 43.478 0.00 0.00 37.60 3.58
3620 4307 3.047796 CTGACTGCAGCATGAACAAAAC 58.952 45.455 15.27 0.00 39.69 2.43
3638 4325 2.871637 GCAACATGTGAGTAGCCACTGA 60.872 50.000 0.00 0.00 37.89 3.41
3648 4335 3.191791 TGTGGATCAATGCAACATGTGAG 59.808 43.478 0.00 0.00 0.00 3.51
3658 4345 1.814394 TGTTCTGCTGTGGATCAATGC 59.186 47.619 0.00 0.00 0.00 3.56
3664 4351 0.322277 CAGGCTGTTCTGCTGTGGAT 60.322 55.000 6.28 0.00 0.00 3.41
3665 4352 1.071987 CAGGCTGTTCTGCTGTGGA 59.928 57.895 6.28 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.