Multiple sequence alignment - TraesCS2A01G479200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G479200 chr2A 100.000 4744 0 0 1 4744 717558253 717553510 0.000000e+00 8761.0
1 TraesCS2A01G479200 chr2A 80.637 408 79 0 1114 1521 673344664 673345071 2.760000e-82 316.0
2 TraesCS2A01G479200 chr2A 97.436 39 1 0 475 513 161931528 161931490 3.060000e-07 67.6
3 TraesCS2A01G479200 chr2A 97.436 39 1 0 475 513 161932181 161932219 3.060000e-07 67.6
4 TraesCS2A01G479200 chr2A 91.489 47 3 1 3660 3706 1589587 1589632 3.960000e-06 63.9
5 TraesCS2A01G479200 chr2B 97.515 2012 38 4 1495 3494 698003517 698005528 0.000000e+00 3428.0
6 TraesCS2A01G479200 chr2B 90.326 1902 151 14 1100 2977 709999955 709998063 0.000000e+00 2462.0
7 TraesCS2A01G479200 chr2B 94.238 833 17 3 676 1502 698002157 698002964 0.000000e+00 1243.0
8 TraesCS2A01G479200 chr2B 93.322 614 33 5 1 607 697998663 697999275 0.000000e+00 900.0
9 TraesCS2A01G479200 chr2B 82.710 775 117 14 1112 1877 709848558 709847792 0.000000e+00 673.0
10 TraesCS2A01G479200 chr2B 92.908 423 21 4 3487 3904 698006040 698006458 1.460000e-169 606.0
11 TraesCS2A01G479200 chr2B 85.948 306 23 9 3168 3469 709997876 709997587 4.610000e-80 309.0
12 TraesCS2A01G479200 chr2B 77.301 326 57 14 158 475 547936692 547936376 4.880000e-40 176.0
13 TraesCS2A01G479200 chr2B 82.759 145 16 6 4242 4383 709996415 709996277 2.320000e-23 121.0
14 TraesCS2A01G479200 chr2B 84.762 105 5 6 3545 3639 709997419 709997316 1.410000e-15 95.3
15 TraesCS2A01G479200 chr2B 92.500 40 3 0 3128 3167 210826719 210826680 1.840000e-04 58.4
16 TraesCS2A01G479200 chr2B 97.143 35 0 1 3130 3163 731191617 731191651 1.840000e-04 58.4
17 TraesCS2A01G479200 chr2D 91.910 1916 128 11 1116 3017 587370744 587368842 0.000000e+00 2654.0
18 TraesCS2A01G479200 chr2D 79.822 1348 238 24 1112 2440 587306103 587304771 0.000000e+00 952.0
19 TraesCS2A01G479200 chr2D 81.364 440 46 18 4267 4693 587367742 587367326 4.580000e-85 326.0
20 TraesCS2A01G479200 chr2D 86.149 296 19 9 3168 3460 587368694 587368418 2.770000e-77 300.0
21 TraesCS2A01G479200 chr2D 94.086 186 7 2 2835 3017 587595005 587594821 3.620000e-71 279.0
22 TraesCS2A01G479200 chr2D 93.548 186 8 2 2835 3017 644591202 644591018 1.680000e-69 274.0
23 TraesCS2A01G479200 chr2D 84.583 240 29 5 3712 3949 587368111 587367878 1.030000e-56 231.0
24 TraesCS2A01G479200 chr2D 92.453 106 4 4 3544 3646 587594166 587594062 1.060000e-31 148.0
25 TraesCS2A01G479200 chr2D 92.453 106 4 4 3544 3646 644590363 644590259 1.060000e-31 148.0
26 TraesCS2A01G479200 chr2D 87.736 106 7 5 3545 3645 587368239 587368135 8.340000e-23 119.0
27 TraesCS2A01G479200 chr2D 91.525 59 3 1 3404 3460 587368583 587368525 3.940000e-11 80.5
28 TraesCS2A01G479200 chr7A 83.507 479 72 5 1 474 299597470 299596994 1.570000e-119 440.0
29 TraesCS2A01G479200 chr7A 97.500 40 1 0 3663 3702 616935490 616935451 8.520000e-08 69.4
30 TraesCS2A01G479200 chr7A 89.796 49 4 1 3942 3989 679957011 679957059 1.430000e-05 62.1
31 TraesCS2A01G479200 chr5D 80.833 480 80 9 5 477 90004189 90003715 2.700000e-97 366.0
32 TraesCS2A01G479200 chr5D 96.875 32 1 0 3128 3159 56915681 56915712 2.000000e-03 54.7
33 TraesCS2A01G479200 chr7D 83.288 365 52 6 72 431 270172740 270172380 1.270000e-85 327.0
34 TraesCS2A01G479200 chr7D 97.500 40 0 1 3660 3699 159670303 159670265 3.060000e-07 67.6
35 TraesCS2A01G479200 chr7D 97.436 39 1 0 475 513 500234733 500234771 3.060000e-07 67.6
36 TraesCS2A01G479200 chr7D 94.872 39 2 0 475 513 500222271 500222233 1.430000e-05 62.1
37 TraesCS2A01G479200 chr7D 93.023 43 2 1 3663 3705 535555491 535555532 1.430000e-05 62.1
38 TraesCS2A01G479200 chr7D 92.857 42 3 0 3948 3989 588081777 588081818 1.430000e-05 62.1
39 TraesCS2A01G479200 chr7D 100.000 29 0 0 3958 3986 610825666 610825638 2.000000e-03 54.7
40 TraesCS2A01G479200 chr4D 79.218 409 80 4 1115 1521 41920271 41920676 3.620000e-71 279.0
41 TraesCS2A01G479200 chr4D 76.995 426 78 16 37 451 308655539 308655955 4.780000e-55 226.0
42 TraesCS2A01G479200 chr3A 78.589 411 86 2 1112 1521 114433486 114433895 2.180000e-68 270.0
43 TraesCS2A01G479200 chr3A 90.000 50 4 1 3648 3696 750299564 750299515 3.960000e-06 63.9
44 TraesCS2A01G479200 chr3A 100.000 31 0 0 3128 3158 727489543 727489573 1.840000e-04 58.4
45 TraesCS2A01G479200 chr3A 94.444 36 1 1 3959 3994 28159453 28159419 2.000000e-03 54.7
46 TraesCS2A01G479200 chr3B 79.255 376 76 2 1147 1521 147553267 147553641 1.310000e-65 261.0
47 TraesCS2A01G479200 chr3B 77.260 365 71 12 115 474 522225075 522225432 2.240000e-48 204.0
48 TraesCS2A01G479200 chr3B 100.000 28 0 0 3134 3161 296634561 296634534 9.000000e-03 52.8
49 TraesCS2A01G479200 chr4B 76.063 447 91 12 37 474 385430451 385430890 7.990000e-53 219.0
50 TraesCS2A01G479200 chrUn 77.301 326 57 14 158 475 2142489 2142173 4.880000e-40 176.0
51 TraesCS2A01G479200 chrUn 92.453 106 4 4 3544 3646 480358839 480358943 1.060000e-31 148.0
52 TraesCS2A01G479200 chr5A 76.752 314 59 13 165 472 345375441 345375136 3.800000e-36 163.0
53 TraesCS2A01G479200 chr5A 94.737 38 2 0 3952 3989 303399961 303399924 5.130000e-05 60.2
54 TraesCS2A01G479200 chr1D 94.118 51 3 0 3648 3698 326777476 326777526 1.420000e-10 78.7
55 TraesCS2A01G479200 chr1D 92.308 39 3 0 3123 3161 367781089 367781127 6.630000e-04 56.5
56 TraesCS2A01G479200 chr5B 95.349 43 2 0 3947 3989 285037983 285037941 8.520000e-08 69.4
57 TraesCS2A01G479200 chr5B 86.667 60 4 4 3643 3701 344531856 344531912 3.960000e-06 63.9
58 TraesCS2A01G479200 chr5B 92.857 42 2 1 3948 3989 243851012 243851052 5.130000e-05 60.2
59 TraesCS2A01G479200 chr7B 97.436 39 1 0 475 513 711049261 711049223 3.060000e-07 67.6
60 TraesCS2A01G479200 chr7B 86.441 59 4 4 3935 3989 660651239 660651297 1.430000e-05 62.1
61 TraesCS2A01G479200 chr4A 97.436 39 1 0 475 513 28599216 28599178 3.060000e-07 67.6
62 TraesCS2A01G479200 chr4A 97.436 39 1 0 475 513 583691398 583691360 3.060000e-07 67.6
63 TraesCS2A01G479200 chr4A 92.857 42 3 0 3948 3989 647167970 647168011 1.430000e-05 62.1
64 TraesCS2A01G479200 chr6A 88.889 54 5 1 3647 3700 19524542 19524490 1.100000e-06 65.8
65 TraesCS2A01G479200 chr1A 100.000 30 0 0 3129 3158 533216375 533216404 6.630000e-04 56.5
66 TraesCS2A01G479200 chr1A 100.000 28 0 0 3134 3161 33216295 33216268 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G479200 chr2A 717553510 717558253 4743 True 8761.000000 8761 100.000000 1 4744 1 chr2A.!!$R2 4743
1 TraesCS2A01G479200 chr2B 697998663 698006458 7795 False 1544.250000 3428 94.495750 1 3904 4 chr2B.!!$F2 3903
2 TraesCS2A01G479200 chr2B 709996277 709999955 3678 True 746.825000 2462 85.948750 1100 4383 4 chr2B.!!$R4 3283
3 TraesCS2A01G479200 chr2B 709847792 709848558 766 True 673.000000 673 82.710000 1112 1877 1 chr2B.!!$R3 765
4 TraesCS2A01G479200 chr2D 587304771 587306103 1332 True 952.000000 952 79.822000 1112 2440 1 chr2D.!!$R1 1328
5 TraesCS2A01G479200 chr2D 587367326 587370744 3418 True 618.416667 2654 87.211167 1116 4693 6 chr2D.!!$R2 3577
6 TraesCS2A01G479200 chr2D 587594062 587595005 943 True 213.500000 279 93.269500 2835 3646 2 chr2D.!!$R3 811
7 TraesCS2A01G479200 chr2D 644590259 644591202 943 True 211.000000 274 93.000500 2835 3646 2 chr2D.!!$R4 811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
809 3631 0.034896 TGGCCCACTTCGTCTTCTTC 59.965 55.000 0.00 0.00 0.00 2.87 F
1200 4030 0.248907 ACTATGTCCGATTCCGTGCG 60.249 55.000 0.00 0.00 0.00 5.34 F
1608 4999 1.690283 CCTCATTCACAGTGAGCGCG 61.690 60.000 0.00 0.00 41.33 6.86 F
3087 6575 1.739562 GCTGCCTTGACGTCTCCTG 60.740 63.158 17.92 3.96 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 5203 1.132527 TCAAAGTCCTCCTTCTCCCCA 60.133 52.381 0.00 0.0 31.27 4.96 R
2964 6393 0.172578 CTTGATGCATGCCTGGTGTG 59.827 55.000 16.68 0.0 0.00 3.82 R
3130 6618 2.701951 GTCTTACATTATGGGACGGGGA 59.298 50.000 0.00 0.0 0.00 4.81 R
4723 9364 0.109597 GATGGTGCACCGCTTCAAAG 60.110 55.000 30.07 0.0 39.43 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 2.952978 CTCGGATACAGTCTAGCCACTT 59.047 50.000 0.00 0.00 0.00 3.16
110 115 0.758734 CCAACACCACTCACAGGAGA 59.241 55.000 0.00 0.00 44.26 3.71
113 118 0.467474 ACACCACTCACAGGAGACGA 60.467 55.000 0.00 0.00 44.26 4.20
177 182 6.034683 CGTTGGACTTCAAGTGTAGTTATAGC 59.965 42.308 0.00 0.00 35.80 2.97
187 192 4.643784 AGTGTAGTTATAGCGGCAGTTACT 59.356 41.667 1.45 2.28 0.00 2.24
223 229 1.638959 ACTCCCCTCTTATCTCCCCT 58.361 55.000 0.00 0.00 0.00 4.79
229 235 4.077387 TCCCCTCTTATCTCCCCTTTGTAT 60.077 45.833 0.00 0.00 0.00 2.29
261 267 1.075525 AGGGTGGGCGCACTCTATA 60.076 57.895 32.85 0.00 33.44 1.31
269 275 2.614734 GGGCGCACTCTATATAAACCCC 60.615 54.545 10.83 0.00 0.00 4.95
276 282 5.014228 GCACTCTATATAAACCCCCTCCATT 59.986 44.000 0.00 0.00 0.00 3.16
336 342 2.487986 CCCAAGAGAAGACACAAGCCTT 60.488 50.000 0.00 0.00 0.00 4.35
358 364 1.023502 GACACGAGACCTAGGGCTAC 58.976 60.000 20.08 10.60 0.00 3.58
386 392 1.522580 GAGAGGGGCATGAAGTCGC 60.523 63.158 0.00 0.00 34.52 5.19
392 398 1.604278 GGGGCATGAAGTCGCTAAATC 59.396 52.381 0.00 0.00 0.00 2.17
394 400 2.288666 GGCATGAAGTCGCTAAATCCA 58.711 47.619 0.00 0.00 0.00 3.41
406 412 4.688879 TCGCTAAATCCAAGTGTTACACAG 59.311 41.667 18.19 9.38 36.74 3.66
439 445 3.447950 AGGTTCCGTCCCTATTTGTACT 58.552 45.455 0.00 0.00 0.00 2.73
445 451 3.005578 CCGTCCCTATTTGTACTCCTAGC 59.994 52.174 0.00 0.00 0.00 3.42
476 483 2.014093 GATTCGTTGCCTCGACAGCG 62.014 60.000 6.02 6.02 44.42 5.18
526 533 2.289756 TGCCGCCATAGTAGTTTTGTCA 60.290 45.455 0.00 0.00 0.00 3.58
557 565 6.095021 ACCTAGAGTTGGTTCTTTTTGTCAAC 59.905 38.462 0.00 0.00 38.26 3.18
570 578 3.691342 TCAACTCGACTGGGCGGG 61.691 66.667 0.00 0.00 37.87 6.13
583 591 4.011517 GCGGGTGGTCCTTTCGGA 62.012 66.667 0.00 0.00 36.83 4.55
607 615 6.941857 ACAAAAAGACTGGTTGGTTTGTTAT 58.058 32.000 0.00 0.00 36.13 1.89
608 616 8.068892 ACAAAAAGACTGGTTGGTTTGTTATA 57.931 30.769 0.00 0.00 36.13 0.98
655 3428 5.296748 AGCCAAATCAAATGTTACCAACAC 58.703 37.500 0.00 0.00 45.50 3.32
688 3509 8.152309 TCTTTTGTAAGATTGCCAAAATTTGG 57.848 30.769 19.81 19.81 43.29 3.28
781 3603 4.265904 TCTTTCAGAACTGCCGATACAA 57.734 40.909 0.00 0.00 0.00 2.41
791 3613 3.941483 ACTGCCGATACAAGGAAGAATTG 59.059 43.478 0.00 0.00 36.48 2.32
793 3615 2.033424 GCCGATACAAGGAAGAATTGGC 59.967 50.000 0.00 0.00 40.70 4.52
794 3616 2.618709 CCGATACAAGGAAGAATTGGCC 59.381 50.000 0.00 0.00 31.76 5.36
795 3617 2.618709 CGATACAAGGAAGAATTGGCCC 59.381 50.000 0.00 0.00 31.76 5.80
796 3618 3.631250 GATACAAGGAAGAATTGGCCCA 58.369 45.455 0.00 0.00 31.76 5.36
797 3619 1.632589 ACAAGGAAGAATTGGCCCAC 58.367 50.000 0.00 0.00 31.76 4.61
798 3620 1.147817 ACAAGGAAGAATTGGCCCACT 59.852 47.619 0.00 0.00 31.76 4.00
799 3621 2.250924 CAAGGAAGAATTGGCCCACTT 58.749 47.619 0.00 0.00 0.00 3.16
800 3622 2.222227 AGGAAGAATTGGCCCACTTC 57.778 50.000 5.72 5.72 38.26 3.01
801 3623 0.811281 GGAAGAATTGGCCCACTTCG 59.189 55.000 8.04 0.00 39.39 3.79
802 3624 1.534729 GAAGAATTGGCCCACTTCGT 58.465 50.000 8.04 5.15 30.14 3.85
803 3625 1.468914 GAAGAATTGGCCCACTTCGTC 59.531 52.381 12.52 12.52 30.14 4.20
804 3626 0.693049 AGAATTGGCCCACTTCGTCT 59.307 50.000 8.04 0.00 30.14 4.18
805 3627 1.073923 AGAATTGGCCCACTTCGTCTT 59.926 47.619 8.04 0.00 30.14 3.01
806 3628 1.468914 GAATTGGCCCACTTCGTCTTC 59.531 52.381 0.00 0.00 0.00 2.87
807 3629 0.693049 ATTGGCCCACTTCGTCTTCT 59.307 50.000 0.00 0.00 0.00 2.85
808 3630 0.472471 TTGGCCCACTTCGTCTTCTT 59.528 50.000 0.00 0.00 0.00 2.52
809 3631 0.034896 TGGCCCACTTCGTCTTCTTC 59.965 55.000 0.00 0.00 0.00 2.87
810 3632 0.673956 GGCCCACTTCGTCTTCTTCC 60.674 60.000 0.00 0.00 0.00 3.46
811 3633 1.014564 GCCCACTTCGTCTTCTTCCG 61.015 60.000 0.00 0.00 0.00 4.30
812 3634 1.014564 CCCACTTCGTCTTCTTCCGC 61.015 60.000 0.00 0.00 0.00 5.54
813 3635 0.319555 CCACTTCGTCTTCTTCCGCA 60.320 55.000 0.00 0.00 0.00 5.69
814 3636 1.063806 CACTTCGTCTTCTTCCGCAG 58.936 55.000 0.00 0.00 0.00 5.18
815 3637 0.667792 ACTTCGTCTTCTTCCGCAGC 60.668 55.000 0.00 0.00 0.00 5.25
816 3638 1.355066 CTTCGTCTTCTTCCGCAGCC 61.355 60.000 0.00 0.00 0.00 4.85
817 3639 2.048222 CGTCTTCTTCCGCAGCCA 60.048 61.111 0.00 0.00 0.00 4.75
952 3779 3.487372 TCCACGATCTGATCTATTCCGT 58.513 45.455 15.16 5.19 0.00 4.69
968 3795 2.955614 TCCGTTTCGATCTGTCTTTCC 58.044 47.619 0.00 0.00 0.00 3.13
1152 3982 1.194781 ACTTGGTCAGCCTGATCGGT 61.195 55.000 0.00 0.00 35.27 4.69
1200 4030 0.248907 ACTATGTCCGATTCCGTGCG 60.249 55.000 0.00 0.00 0.00 5.34
1608 4999 1.690283 CCTCATTCACAGTGAGCGCG 61.690 60.000 0.00 0.00 41.33 6.86
1878 5269 2.493278 ACCTAAGTTGATTGCCACATGC 59.507 45.455 0.00 0.00 41.77 4.06
2118 5512 5.554437 TTGTGGGTGACTCTATTGTACAA 57.446 39.130 11.41 11.41 0.00 2.41
2145 5539 9.189156 CTCCATAACAAGGAAATTTATCTTGGA 57.811 33.333 25.00 17.23 41.35 3.53
2256 5653 2.010145 TCTTCACCTGTTGCTATCGC 57.990 50.000 0.00 0.00 0.00 4.58
2507 5912 5.710099 TCAGTAGGGCAACTTTATCTTTTGG 59.290 40.000 0.00 0.00 0.00 3.28
2764 6183 2.893489 ACAGACACATACTCTGACTGCA 59.107 45.455 2.47 0.00 37.90 4.41
2934 6363 2.258286 GTTGGGCGGCACATTGTC 59.742 61.111 5.42 0.00 0.00 3.18
3087 6575 1.739562 GCTGCCTTGACGTCTCCTG 60.740 63.158 17.92 3.96 0.00 3.86
3130 6618 3.450028 GCGTCCTTCTTGATGCTCT 57.550 52.632 0.00 0.00 42.68 4.09
3132 6620 1.933247 CGTCCTTCTTGATGCTCTCC 58.067 55.000 0.00 0.00 0.00 3.71
3150 6638 2.969950 CTCCCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3151 6639 2.701951 TCCCCGTCCCATAATGTAAGAC 59.298 50.000 0.00 0.00 0.00 3.01
3161 6657 8.241367 GTCCCATAATGTAAGACGTTTTTCAAT 58.759 33.333 2.36 0.00 0.00 2.57
3328 6824 4.412207 GTTGGTTTGTCACTGTTGAGTTC 58.588 43.478 0.00 0.00 30.10 3.01
3513 7599 7.103641 ACATCTTGATACTCGGTTGTGTATTT 58.896 34.615 0.00 0.00 35.51 1.40
3514 7600 7.277981 ACATCTTGATACTCGGTTGTGTATTTC 59.722 37.037 0.00 0.00 35.51 2.17
3515 7601 6.931838 TCTTGATACTCGGTTGTGTATTTCT 58.068 36.000 0.00 0.00 35.51 2.52
3516 7602 6.811665 TCTTGATACTCGGTTGTGTATTTCTG 59.188 38.462 0.00 0.00 35.51 3.02
3517 7603 6.032956 TGATACTCGGTTGTGTATTTCTGT 57.967 37.500 0.00 0.00 35.51 3.41
3518 7604 6.460781 TGATACTCGGTTGTGTATTTCTGTT 58.539 36.000 0.00 0.00 35.51 3.16
3519 7605 6.932400 TGATACTCGGTTGTGTATTTCTGTTT 59.068 34.615 0.00 0.00 35.51 2.83
3520 7606 5.668558 ACTCGGTTGTGTATTTCTGTTTC 57.331 39.130 0.00 0.00 0.00 2.78
3521 7607 5.120399 ACTCGGTTGTGTATTTCTGTTTCA 58.880 37.500 0.00 0.00 0.00 2.69
3522 7608 5.763204 ACTCGGTTGTGTATTTCTGTTTCAT 59.237 36.000 0.00 0.00 0.00 2.57
3523 7609 6.932400 ACTCGGTTGTGTATTTCTGTTTCATA 59.068 34.615 0.00 0.00 0.00 2.15
3524 7610 7.606456 ACTCGGTTGTGTATTTCTGTTTCATAT 59.394 33.333 0.00 0.00 0.00 1.78
3525 7611 8.330466 TCGGTTGTGTATTTCTGTTTCATATT 57.670 30.769 0.00 0.00 0.00 1.28
3526 7612 9.438228 TCGGTTGTGTATTTCTGTTTCATATTA 57.562 29.630 0.00 0.00 0.00 0.98
3653 7781 3.431346 GGGATTTGGTTAGTACTCCGTCC 60.431 52.174 0.00 4.98 0.00 4.79
3669 7797 5.070847 ACTCCGTCCCATAATATAAAACCGT 59.929 40.000 0.00 0.00 0.00 4.83
3780 7916 3.589288 ACAGAAAAGGAGCAGGGTCTAAT 59.411 43.478 0.00 0.00 0.00 1.73
3953 8571 9.216117 ACTGTCAAATTGTTCTAATGTACTACC 57.784 33.333 0.00 0.00 0.00 3.18
3954 8572 9.436957 CTGTCAAATTGTTCTAATGTACTACCT 57.563 33.333 0.00 0.00 0.00 3.08
3955 8573 9.431887 TGTCAAATTGTTCTAATGTACTACCTC 57.568 33.333 0.00 0.00 0.00 3.85
3956 8574 8.880750 GTCAAATTGTTCTAATGTACTACCTCC 58.119 37.037 0.00 0.00 0.00 4.30
3957 8575 8.598916 TCAAATTGTTCTAATGTACTACCTCCA 58.401 33.333 0.00 0.00 0.00 3.86
3958 8576 9.396022 CAAATTGTTCTAATGTACTACCTCCAT 57.604 33.333 0.00 0.00 0.00 3.41
3959 8577 9.975218 AAATTGTTCTAATGTACTACCTCCATT 57.025 29.630 0.00 0.00 33.62 3.16
3960 8578 9.975218 AATTGTTCTAATGTACTACCTCCATTT 57.025 29.630 0.00 0.00 31.63 2.32
3961 8579 9.614792 ATTGTTCTAATGTACTACCTCCATTTC 57.385 33.333 0.00 0.00 31.63 2.17
3962 8580 8.375493 TGTTCTAATGTACTACCTCCATTTCT 57.625 34.615 0.00 0.00 31.63 2.52
3963 8581 9.483489 TGTTCTAATGTACTACCTCCATTTCTA 57.517 33.333 0.00 0.00 31.63 2.10
4002 8620 9.797556 TTTGGATATTTCATCTATATACGACCG 57.202 33.333 0.00 0.00 0.00 4.79
4003 8621 8.741603 TGGATATTTCATCTATATACGACCGA 57.258 34.615 0.00 0.00 0.00 4.69
4004 8622 9.350951 TGGATATTTCATCTATATACGACCGAT 57.649 33.333 0.00 0.00 0.00 4.18
4005 8623 9.828852 GGATATTTCATCTATATACGACCGATC 57.171 37.037 0.00 0.00 0.00 3.69
4009 8627 9.833917 ATTTCATCTATATACGACCGATCTAGA 57.166 33.333 0.00 0.00 0.00 2.43
4010 8628 9.662947 TTTCATCTATATACGACCGATCTAGAA 57.337 33.333 0.00 0.00 0.00 2.10
4011 8629 9.662947 TTCATCTATATACGACCGATCTAGAAA 57.337 33.333 0.00 0.00 0.00 2.52
4012 8630 9.662947 TCATCTATATACGACCGATCTAGAAAA 57.337 33.333 0.00 0.00 0.00 2.29
4038 8656 9.739276 AAAGTCAGAACATCCTTATAATTGTGA 57.261 29.630 0.00 0.00 0.00 3.58
4039 8657 9.739276 AAGTCAGAACATCCTTATAATTGTGAA 57.261 29.630 0.00 0.00 0.00 3.18
4040 8658 9.167311 AGTCAGAACATCCTTATAATTGTGAAC 57.833 33.333 0.00 0.00 0.00 3.18
4041 8659 8.116753 GTCAGAACATCCTTATAATTGTGAACG 58.883 37.037 0.00 0.00 0.00 3.95
4042 8660 8.038351 TCAGAACATCCTTATAATTGTGAACGA 58.962 33.333 0.00 0.00 0.00 3.85
4043 8661 8.664798 CAGAACATCCTTATAATTGTGAACGAA 58.335 33.333 0.00 0.00 0.00 3.85
4044 8662 8.883731 AGAACATCCTTATAATTGTGAACGAAG 58.116 33.333 0.00 0.00 0.00 3.79
4045 8663 7.553881 ACATCCTTATAATTGTGAACGAAGG 57.446 36.000 0.00 0.00 34.52 3.46
4046 8664 6.542370 ACATCCTTATAATTGTGAACGAAGGG 59.458 38.462 0.00 0.00 34.10 3.95
4047 8665 6.302535 TCCTTATAATTGTGAACGAAGGGA 57.697 37.500 0.00 0.00 34.10 4.20
4061 8679 4.009002 ACGAAGGGAGTAGTTCTGTACTC 58.991 47.826 2.93 2.93 45.70 2.59
4090 8708 9.890629 TTATCTACAAATCTGCTTGTATCACTT 57.109 29.630 0.00 0.00 40.18 3.16
4096 8714 3.838120 TCTGCTTGTATCACTTGTCTCG 58.162 45.455 0.00 0.00 0.00 4.04
4103 8721 6.466308 TTGTATCACTTGTCTCGTTGATTG 57.534 37.500 0.00 0.00 0.00 2.67
4127 8745 4.523943 TCAACTTGCACCTGAATAAGCAAT 59.476 37.500 0.00 0.00 44.85 3.56
4167 8785 1.134367 GGCTTTACCCCTTTCGATTGC 59.866 52.381 0.00 0.00 0.00 3.56
4168 8786 1.816224 GCTTTACCCCTTTCGATTGCA 59.184 47.619 0.00 0.00 0.00 4.08
4169 8787 2.427095 GCTTTACCCCTTTCGATTGCAT 59.573 45.455 0.00 0.00 0.00 3.96
4170 8788 3.630312 GCTTTACCCCTTTCGATTGCATA 59.370 43.478 0.00 0.00 0.00 3.14
4171 8789 4.261197 GCTTTACCCCTTTCGATTGCATAG 60.261 45.833 0.00 0.00 0.00 2.23
4172 8790 4.764050 TTACCCCTTTCGATTGCATAGA 57.236 40.909 0.00 0.00 0.00 1.98
4173 8791 3.644966 ACCCCTTTCGATTGCATAGAA 57.355 42.857 0.00 0.00 0.00 2.10
4174 8792 3.279434 ACCCCTTTCGATTGCATAGAAC 58.721 45.455 0.00 0.00 0.00 3.01
4175 8793 2.287915 CCCCTTTCGATTGCATAGAACG 59.712 50.000 0.00 0.00 0.00 3.95
4176 8794 2.287915 CCCTTTCGATTGCATAGAACGG 59.712 50.000 12.06 12.06 34.54 4.44
4177 8795 3.194861 CCTTTCGATTGCATAGAACGGA 58.805 45.455 13.13 0.00 36.04 4.69
4178 8796 3.621268 CCTTTCGATTGCATAGAACGGAA 59.379 43.478 13.13 0.00 36.04 4.30
4179 8797 4.094294 CCTTTCGATTGCATAGAACGGAAA 59.906 41.667 13.13 5.28 36.04 3.13
4180 8798 5.220854 CCTTTCGATTGCATAGAACGGAAAT 60.221 40.000 13.13 0.00 36.04 2.17
4181 8799 6.018262 CCTTTCGATTGCATAGAACGGAAATA 60.018 38.462 13.13 0.00 36.04 1.40
4182 8800 5.900339 TCGATTGCATAGAACGGAAATAC 57.100 39.130 0.00 0.00 0.00 1.89
4183 8801 5.353111 TCGATTGCATAGAACGGAAATACA 58.647 37.500 0.00 0.00 0.00 2.29
4184 8802 5.813157 TCGATTGCATAGAACGGAAATACAA 59.187 36.000 0.00 0.00 0.00 2.41
4185 8803 5.901884 CGATTGCATAGAACGGAAATACAAC 59.098 40.000 0.00 0.00 0.00 3.32
4186 8804 5.554822 TTGCATAGAACGGAAATACAACC 57.445 39.130 0.00 0.00 0.00 3.77
4187 8805 4.839121 TGCATAGAACGGAAATACAACCT 58.161 39.130 0.00 0.00 0.00 3.50
4188 8806 5.979993 TGCATAGAACGGAAATACAACCTA 58.020 37.500 0.00 0.00 0.00 3.08
4189 8807 6.408035 TGCATAGAACGGAAATACAACCTAA 58.592 36.000 0.00 0.00 0.00 2.69
4190 8808 6.537301 TGCATAGAACGGAAATACAACCTAAG 59.463 38.462 0.00 0.00 0.00 2.18
4191 8809 6.018180 GCATAGAACGGAAATACAACCTAAGG 60.018 42.308 0.00 0.00 0.00 2.69
4192 8810 4.259356 AGAACGGAAATACAACCTAAGGC 58.741 43.478 0.00 0.00 0.00 4.35
4193 8811 3.706600 ACGGAAATACAACCTAAGGCA 57.293 42.857 0.00 0.00 0.00 4.75
4194 8812 3.606687 ACGGAAATACAACCTAAGGCAG 58.393 45.455 0.00 0.00 0.00 4.85
4222 8841 8.786898 TCTTATAACTGCTTTCATGCATAATCC 58.213 33.333 0.00 0.00 42.48 3.01
4288 8916 3.840124 AGGTATTTCCTCCGGTTCATC 57.160 47.619 0.00 0.00 44.42 2.92
4294 8922 2.202932 CTCCGGTTCATCGCCCTG 60.203 66.667 0.00 0.00 0.00 4.45
4295 8923 3.740128 CTCCGGTTCATCGCCCTGG 62.740 68.421 0.00 0.00 0.00 4.45
4312 8940 1.377333 GGGCTTCGCTTACCTGCTT 60.377 57.895 0.00 0.00 0.00 3.91
4314 8942 0.955919 GGCTTCGCTTACCTGCTTGT 60.956 55.000 0.00 0.00 0.00 3.16
4315 8943 0.875059 GCTTCGCTTACCTGCTTGTT 59.125 50.000 0.00 0.00 0.00 2.83
4316 8944 1.266989 GCTTCGCTTACCTGCTTGTTT 59.733 47.619 0.00 0.00 0.00 2.83
4317 8945 2.287608 GCTTCGCTTACCTGCTTGTTTT 60.288 45.455 0.00 0.00 0.00 2.43
4350 8978 4.461198 AGGAAATCAACTTCTTCAACCGT 58.539 39.130 0.00 0.00 0.00 4.83
4364 8993 2.367241 TCAACCGTGTGATTCTCTTGGA 59.633 45.455 4.55 0.00 0.00 3.53
4372 9001 4.937620 GTGTGATTCTCTTGGAGCAACATA 59.062 41.667 0.00 0.00 0.00 2.29
4380 9009 4.245660 TCTTGGAGCAACATACTTTCTCG 58.754 43.478 0.00 0.00 0.00 4.04
4381 9010 3.678056 TGGAGCAACATACTTTCTCGT 57.322 42.857 0.00 0.00 0.00 4.18
4384 9013 3.368236 GGAGCAACATACTTTCTCGTGTC 59.632 47.826 0.00 0.00 0.00 3.67
4385 9014 3.987868 GAGCAACATACTTTCTCGTGTCA 59.012 43.478 0.00 0.00 0.00 3.58
4386 9015 4.569943 AGCAACATACTTTCTCGTGTCAT 58.430 39.130 0.00 0.00 0.00 3.06
4387 9016 4.997395 AGCAACATACTTTCTCGTGTCATT 59.003 37.500 0.00 0.00 0.00 2.57
4388 9017 5.082059 GCAACATACTTTCTCGTGTCATTG 58.918 41.667 0.00 0.00 0.00 2.82
4389 9018 5.334105 GCAACATACTTTCTCGTGTCATTGT 60.334 40.000 0.00 0.00 0.00 2.71
4390 9019 6.128661 GCAACATACTTTCTCGTGTCATTGTA 60.129 38.462 0.00 0.00 0.00 2.41
4393 9022 9.647797 AACATACTTTCTCGTGTCATTGTAATA 57.352 29.630 0.00 0.00 0.00 0.98
4394 9023 9.817809 ACATACTTTCTCGTGTCATTGTAATAT 57.182 29.630 0.00 0.00 0.00 1.28
4399 9028 9.995379 CTTTCTCGTGTCATTGTAATATAATCG 57.005 33.333 0.00 0.00 0.00 3.34
4400 9029 9.524106 TTTCTCGTGTCATTGTAATATAATCGT 57.476 29.630 0.00 0.00 0.00 3.73
4401 9030 8.502161 TCTCGTGTCATTGTAATATAATCGTG 57.498 34.615 0.00 0.00 0.00 4.35
4402 9031 8.347035 TCTCGTGTCATTGTAATATAATCGTGA 58.653 33.333 0.00 0.00 0.00 4.35
4403 9032 8.859517 TCGTGTCATTGTAATATAATCGTGAA 57.140 30.769 0.00 0.00 0.00 3.18
4404 9033 8.964150 TCGTGTCATTGTAATATAATCGTGAAG 58.036 33.333 0.00 0.00 0.00 3.02
4405 9034 7.736017 CGTGTCATTGTAATATAATCGTGAAGC 59.264 37.037 0.00 0.00 0.00 3.86
4421 9050 5.641636 TCGTGAAGCATACATACAACACAAT 59.358 36.000 0.00 0.00 0.00 2.71
4424 9053 7.960195 CGTGAAGCATACATACAACACAATAAA 59.040 33.333 0.00 0.00 0.00 1.40
4433 9062 6.867816 ACATACAACACAATAAACAATGCCAG 59.132 34.615 0.00 0.00 0.00 4.85
4449 9078 1.470098 GCCAGTGAACACCTGCATAAG 59.530 52.381 10.08 0.00 0.00 1.73
4465 9094 8.370182 ACCTGCATAAGAAGTTTGAAAATTCAT 58.630 29.630 18.56 10.41 37.00 2.57
4466 9095 9.859427 CCTGCATAAGAAGTTTGAAAATTCATA 57.141 29.630 18.56 12.14 37.00 2.15
4482 9111 2.733956 TCATAGTCCCAAAACCATGGC 58.266 47.619 13.04 0.00 39.26 4.40
4485 9114 1.178534 AGTCCCAAAACCATGGCACG 61.179 55.000 13.04 0.00 36.20 5.34
4487 9116 2.656055 CCAAAACCATGGCACGGG 59.344 61.111 13.04 4.86 32.78 5.28
4493 9122 1.691196 AACCATGGCACGGGAATATG 58.309 50.000 13.04 0.00 0.00 1.78
4499 9128 1.003696 TGGCACGGGAATATGTCACAA 59.996 47.619 0.00 0.00 0.00 3.33
4506 9135 4.345257 ACGGGAATATGTCACAAGAGCTAT 59.655 41.667 0.00 0.00 0.00 2.97
4513 9142 2.831526 TGTCACAAGAGCTATGCACCTA 59.168 45.455 0.00 0.00 0.00 3.08
4519 9152 3.760580 AGAGCTATGCACCTAATGGAC 57.239 47.619 0.00 0.00 37.04 4.02
4540 9173 6.992123 TGGACCACATTAATATCATGAGACAC 59.008 38.462 0.09 0.00 0.00 3.67
4541 9174 6.992123 GGACCACATTAATATCATGAGACACA 59.008 38.462 0.09 0.00 0.00 3.72
4542 9175 7.498900 GGACCACATTAATATCATGAGACACAA 59.501 37.037 0.09 0.00 0.00 3.33
4543 9176 8.806429 ACCACATTAATATCATGAGACACAAA 57.194 30.769 0.09 0.00 0.00 2.83
4559 9192 9.500785 TGAGACACAAACATATCATACAAGAAA 57.499 29.630 0.00 0.00 0.00 2.52
4597 9232 9.613428 ATTTTCATATCTCTATTTTGTCGACCA 57.387 29.630 14.12 0.00 0.00 4.02
4610 9245 3.388308 TGTCGACCAAAAATGCAAATGG 58.612 40.909 14.12 8.40 38.91 3.16
4621 9256 6.534475 AAAATGCAAATGGCTCTTCATCTA 57.466 33.333 0.00 0.00 45.15 1.98
4630 9265 9.334947 CAAATGGCTCTTCATCTATTTTCTCTA 57.665 33.333 0.00 0.00 0.00 2.43
4637 9272 9.658799 CTCTTCATCTATTTTCTCTAACCAACA 57.341 33.333 0.00 0.00 0.00 3.33
4668 9309 4.413189 TGGCTATCTTGGATTGATTCCTCA 59.587 41.667 0.00 0.00 45.68 3.86
4684 9325 7.596494 TGATTCCTCATCAAAACTCAATCAAC 58.404 34.615 0.00 0.00 39.11 3.18
4687 9328 4.379813 CCTCATCAAAACTCAATCAACCGG 60.380 45.833 0.00 0.00 0.00 5.28
4688 9329 4.141287 TCATCAAAACTCAATCAACCGGT 58.859 39.130 0.00 0.00 0.00 5.28
4693 9334 4.729227 AAACTCAATCAACCGGTTGTTT 57.271 36.364 38.83 34.01 41.16 2.83
4694 9335 3.982576 ACTCAATCAACCGGTTGTTTC 57.017 42.857 38.83 0.00 41.16 2.78
4695 9336 3.283751 ACTCAATCAACCGGTTGTTTCA 58.716 40.909 38.83 26.35 41.16 2.69
4696 9337 3.066203 ACTCAATCAACCGGTTGTTTCAC 59.934 43.478 38.83 0.00 41.16 3.18
4697 9338 3.283751 TCAATCAACCGGTTGTTTCACT 58.716 40.909 38.83 18.46 41.16 3.41
4698 9339 3.697045 TCAATCAACCGGTTGTTTCACTT 59.303 39.130 38.83 22.77 41.16 3.16
4699 9340 3.708563 ATCAACCGGTTGTTTCACTTG 57.291 42.857 38.83 17.79 41.16 3.16
4700 9341 2.438411 TCAACCGGTTGTTTCACTTGT 58.562 42.857 38.83 4.04 41.16 3.16
4701 9342 2.820787 TCAACCGGTTGTTTCACTTGTT 59.179 40.909 38.83 3.82 41.16 2.83
4702 9343 3.256136 TCAACCGGTTGTTTCACTTGTTT 59.744 39.130 38.83 3.33 41.16 2.83
4703 9344 3.224884 ACCGGTTGTTTCACTTGTTTG 57.775 42.857 0.00 0.00 0.00 2.93
4704 9345 2.559231 ACCGGTTGTTTCACTTGTTTGT 59.441 40.909 0.00 0.00 0.00 2.83
4705 9346 3.006003 ACCGGTTGTTTCACTTGTTTGTT 59.994 39.130 0.00 0.00 0.00 2.83
4706 9347 3.610677 CCGGTTGTTTCACTTGTTTGTTC 59.389 43.478 0.00 0.00 0.00 3.18
4707 9348 3.610677 CGGTTGTTTCACTTGTTTGTTCC 59.389 43.478 0.00 0.00 0.00 3.62
4708 9349 3.930229 GGTTGTTTCACTTGTTTGTTCCC 59.070 43.478 0.00 0.00 0.00 3.97
4709 9350 3.878160 TGTTTCACTTGTTTGTTCCCC 57.122 42.857 0.00 0.00 0.00 4.81
4710 9351 3.165875 TGTTTCACTTGTTTGTTCCCCA 58.834 40.909 0.00 0.00 0.00 4.96
4711 9352 3.772025 TGTTTCACTTGTTTGTTCCCCAT 59.228 39.130 0.00 0.00 0.00 4.00
4712 9353 4.119136 GTTTCACTTGTTTGTTCCCCATG 58.881 43.478 0.00 0.00 0.00 3.66
4713 9354 3.304911 TCACTTGTTTGTTCCCCATGA 57.695 42.857 0.00 0.00 0.00 3.07
4714 9355 3.221771 TCACTTGTTTGTTCCCCATGAG 58.778 45.455 0.00 0.00 0.00 2.90
4715 9356 2.297033 CACTTGTTTGTTCCCCATGAGG 59.703 50.000 0.00 0.00 0.00 3.86
4716 9357 1.273327 CTTGTTTGTTCCCCATGAGGC 59.727 52.381 0.00 0.00 0.00 4.70
4717 9358 0.187117 TGTTTGTTCCCCATGAGGCA 59.813 50.000 0.00 0.00 0.00 4.75
4718 9359 1.203162 TGTTTGTTCCCCATGAGGCAT 60.203 47.619 0.00 0.00 0.00 4.40
4719 9360 1.901833 GTTTGTTCCCCATGAGGCATT 59.098 47.619 0.00 0.00 0.00 3.56
4720 9361 1.559368 TTGTTCCCCATGAGGCATTG 58.441 50.000 0.00 0.00 0.00 2.82
4721 9362 0.703488 TGTTCCCCATGAGGCATTGA 59.297 50.000 0.00 0.00 0.00 2.57
4722 9363 1.076841 TGTTCCCCATGAGGCATTGAA 59.923 47.619 0.00 0.00 0.00 2.69
4723 9364 1.478105 GTTCCCCATGAGGCATTGAAC 59.522 52.381 0.00 0.00 0.00 3.18
4724 9365 1.002069 TCCCCATGAGGCATTGAACT 58.998 50.000 0.00 0.00 0.00 3.01
4725 9366 1.358787 TCCCCATGAGGCATTGAACTT 59.641 47.619 0.00 0.00 0.00 2.66
4726 9367 2.181975 CCCCATGAGGCATTGAACTTT 58.818 47.619 0.00 0.00 0.00 2.66
4727 9368 2.093869 CCCCATGAGGCATTGAACTTTG 60.094 50.000 0.00 0.00 0.00 2.77
4728 9369 2.827322 CCCATGAGGCATTGAACTTTGA 59.173 45.455 0.00 0.00 0.00 2.69
4729 9370 3.258872 CCCATGAGGCATTGAACTTTGAA 59.741 43.478 0.00 0.00 0.00 2.69
4730 9371 4.491676 CCATGAGGCATTGAACTTTGAAG 58.508 43.478 0.00 0.00 0.00 3.02
4731 9372 3.648339 TGAGGCATTGAACTTTGAAGC 57.352 42.857 0.00 0.00 0.00 3.86
4732 9373 2.030893 TGAGGCATTGAACTTTGAAGCG 60.031 45.455 0.00 0.00 0.00 4.68
4733 9374 1.270550 AGGCATTGAACTTTGAAGCGG 59.729 47.619 0.00 0.00 0.00 5.52
4734 9375 1.000274 GGCATTGAACTTTGAAGCGGT 60.000 47.619 0.00 0.00 0.00 5.68
4735 9376 2.053627 GCATTGAACTTTGAAGCGGTG 58.946 47.619 0.00 0.00 0.00 4.94
4736 9377 2.053627 CATTGAACTTTGAAGCGGTGC 58.946 47.619 0.00 0.00 0.00 5.01
4737 9378 1.098869 TTGAACTTTGAAGCGGTGCA 58.901 45.000 0.00 0.00 0.00 4.57
4738 9379 0.380378 TGAACTTTGAAGCGGTGCAC 59.620 50.000 8.80 8.80 0.00 4.57
4739 9380 0.317854 GAACTTTGAAGCGGTGCACC 60.318 55.000 26.78 26.78 0.00 5.01
4740 9381 1.034838 AACTTTGAAGCGGTGCACCA 61.035 50.000 34.16 12.97 35.14 4.17
4741 9382 0.823356 ACTTTGAAGCGGTGCACCAT 60.823 50.000 34.16 20.15 35.14 3.55
4742 9383 0.109597 CTTTGAAGCGGTGCACCATC 60.110 55.000 34.16 26.62 35.14 3.51
4743 9384 1.523154 TTTGAAGCGGTGCACCATCC 61.523 55.000 34.16 21.27 35.14 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.530744 TCTGAATGCGCTTACGGTCT 59.469 50.000 9.73 0.00 40.57 3.85
8 9 1.398041 TGCACATCTGAATGCGCTTAC 59.602 47.619 9.73 0.00 45.13 2.34
110 115 4.096003 CCCACATCGCCCCTTCGT 62.096 66.667 0.00 0.00 0.00 3.85
113 118 4.115199 GCTCCCACATCGCCCCTT 62.115 66.667 0.00 0.00 0.00 3.95
132 137 1.066645 GTTAATCCCCTCGGTCGTTGT 60.067 52.381 0.00 0.00 0.00 3.32
138 143 0.251073 CCAACGTTAATCCCCTCGGT 59.749 55.000 0.00 0.00 0.00 4.69
139 144 0.538118 TCCAACGTTAATCCCCTCGG 59.462 55.000 0.00 0.00 0.00 4.63
140 145 1.206371 AGTCCAACGTTAATCCCCTCG 59.794 52.381 0.00 0.00 0.00 4.63
177 182 1.553308 GGCGTTACTAGTAACTGCCG 58.447 55.000 36.90 27.84 45.57 5.69
223 229 6.487668 CACCCTCATCAATGCTATGATACAAA 59.512 38.462 4.78 0.00 37.96 2.83
229 235 2.107031 CCCACCCTCATCAATGCTATGA 59.893 50.000 0.00 0.00 32.56 2.15
261 267 1.014804 TGGCAATGGAGGGGGTTTAT 58.985 50.000 0.00 0.00 0.00 1.40
269 275 1.108776 CCTTGTCATGGCAATGGAGG 58.891 55.000 14.15 7.32 34.30 4.30
276 282 1.971167 GCGAACCCTTGTCATGGCA 60.971 57.895 0.00 0.00 0.00 4.92
336 342 1.077930 CCCTAGGTCTCGTGTCCGA 60.078 63.158 8.29 0.00 41.73 4.55
349 355 5.801380 CTCTCTTAGAGGTAGTAGCCCTAG 58.199 50.000 9.58 0.00 38.67 3.02
377 383 4.579869 ACACTTGGATTTAGCGACTTCAT 58.420 39.130 0.00 0.00 0.00 2.57
386 392 5.334879 GCACCTGTGTAACACTTGGATTTAG 60.335 44.000 0.00 0.00 45.67 1.85
392 398 0.951558 GGCACCTGTGTAACACTTGG 59.048 55.000 0.00 0.00 45.67 3.61
394 400 0.179468 ACGGCACCTGTGTAACACTT 59.821 50.000 0.00 0.00 45.67 3.16
406 412 0.459063 CGGAACCTAACTACGGCACC 60.459 60.000 0.00 0.00 0.00 5.01
439 445 2.586648 TCTGACAGTGAGTGCTAGGA 57.413 50.000 1.59 0.00 0.00 2.94
445 451 2.156504 GCAACGAATCTGACAGTGAGTG 59.843 50.000 1.59 0.00 0.00 3.51
526 533 3.532102 AGAACCAACTCTAGGTGGGATT 58.468 45.455 18.13 4.41 41.61 3.01
583 591 4.882842 ACAAACCAACCAGTCTTTTTGT 57.117 36.364 0.00 0.00 33.44 2.83
588 596 7.648039 TGTTTATAACAAACCAACCAGTCTT 57.352 32.000 0.00 0.00 38.72 3.01
594 602 6.483640 TGCCAAATGTTTATAACAAACCAACC 59.516 34.615 0.00 0.00 45.86 3.77
781 3603 1.614317 CGAAGTGGGCCAATTCTTCCT 60.614 52.381 35.24 14.17 36.48 3.36
797 3619 1.355066 GGCTGCGGAAGAAGACGAAG 61.355 60.000 0.00 0.00 40.08 3.79
798 3620 1.374252 GGCTGCGGAAGAAGACGAA 60.374 57.895 0.00 0.00 40.08 3.85
799 3621 2.261671 GGCTGCGGAAGAAGACGA 59.738 61.111 0.00 0.00 40.08 4.20
802 3624 2.347490 GGTGGCTGCGGAAGAAGA 59.653 61.111 0.00 0.00 40.08 2.87
803 3625 3.121030 CGGTGGCTGCGGAAGAAG 61.121 66.667 0.00 0.00 40.88 2.85
866 3688 1.369209 CGCGCACCAACTGACTTTG 60.369 57.895 8.75 0.00 0.00 2.77
952 3779 3.502211 GGCAAAGGAAAGACAGATCGAAA 59.498 43.478 0.00 0.00 0.00 3.46
968 3795 0.825010 AGCAGACCTGGTTGGCAAAG 60.825 55.000 20.88 0.00 38.24 2.77
1534 4925 0.985490 ATCTTCTCCTGGGAGGGTGC 60.985 60.000 15.66 0.00 42.20 5.01
1812 5203 1.132527 TCAAAGTCCTCCTTCTCCCCA 60.133 52.381 0.00 0.00 31.27 4.96
2118 5512 8.971073 CCAAGATAAATTTCCTTGTTATGGAGT 58.029 33.333 21.67 0.00 36.47 3.85
2145 5539 1.547675 CCAGTGGCAAGGTGGTAATGT 60.548 52.381 0.00 0.00 0.00 2.71
2256 5653 2.046892 CTCGCTCACCAAGTGGGG 60.047 66.667 1.69 0.00 42.91 4.96
2544 5949 5.539979 TGCAACTTATGTTTGTGCAATCAT 58.460 33.333 11.64 11.64 32.25 2.45
2605 6023 9.636879 TGACTATAGTTGTAGCTAGTATCTACG 57.363 37.037 6.88 0.00 39.30 3.51
2764 6183 7.018149 TGCCCCCATTATATTCAGTACTACAAT 59.982 37.037 0.00 0.00 0.00 2.71
2784 6205 6.493189 TCCTATTGAAAATATTTTGCCCCC 57.507 37.500 17.98 4.14 0.00 5.40
2799 6220 9.706691 CTTCAAAGTAGTAACACTTCCTATTGA 57.293 33.333 0.00 0.00 37.78 2.57
2964 6393 0.172578 CTTGATGCATGCCTGGTGTG 59.827 55.000 16.68 0.00 0.00 3.82
3130 6618 2.701951 GTCTTACATTATGGGACGGGGA 59.298 50.000 0.00 0.00 0.00 4.81
3132 6620 2.750948 CGTCTTACATTATGGGACGGG 58.249 52.381 20.50 4.10 43.69 5.28
3150 6638 8.331730 AGTAAATGCCTACTATTGAAAAACGT 57.668 30.769 0.00 0.00 30.13 3.99
3328 6824 6.412072 CACTTGCGTTTTCTCTTCTTTAACAG 59.588 38.462 0.00 0.00 0.00 3.16
3469 6974 6.163476 AGATGTAGCATTACTCGTGTTTTGA 58.837 36.000 0.00 0.00 0.00 2.69
3529 7615 6.334202 ACAAAACAGAACTTATCCGCAAAAA 58.666 32.000 0.00 0.00 0.00 1.94
3530 7616 5.897050 ACAAAACAGAACTTATCCGCAAAA 58.103 33.333 0.00 0.00 0.00 2.44
3531 7617 5.508200 ACAAAACAGAACTTATCCGCAAA 57.492 34.783 0.00 0.00 0.00 3.68
3532 7618 6.811253 ATACAAAACAGAACTTATCCGCAA 57.189 33.333 0.00 0.00 0.00 4.85
3533 7619 6.401688 CGAATACAAAACAGAACTTATCCGCA 60.402 38.462 0.00 0.00 0.00 5.69
3534 7620 5.957796 CGAATACAAAACAGAACTTATCCGC 59.042 40.000 0.00 0.00 0.00 5.54
3535 7621 7.285783 TCGAATACAAAACAGAACTTATCCG 57.714 36.000 0.00 0.00 0.00 4.18
3536 7622 8.879759 TGATCGAATACAAAACAGAACTTATCC 58.120 33.333 0.00 0.00 0.00 2.59
3615 7733 6.183360 ACCAAATCCCCGCAAAAAGAATATAG 60.183 38.462 0.00 0.00 0.00 1.31
3618 7736 3.835395 ACCAAATCCCCGCAAAAAGAATA 59.165 39.130 0.00 0.00 0.00 1.75
3619 7737 2.637382 ACCAAATCCCCGCAAAAAGAAT 59.363 40.909 0.00 0.00 0.00 2.40
3666 7794 6.323266 CCTCCGTCTCATAATATAAGAACGG 58.677 44.000 4.33 4.33 36.21 4.44
3669 7797 7.239438 ACTCCCTCCGTCTCATAATATAAGAA 58.761 38.462 0.00 0.00 0.00 2.52
3682 7810 3.735720 ACTAAACTACTCCCTCCGTCT 57.264 47.619 0.00 0.00 0.00 4.18
3720 7848 1.133637 TGCCTAGCAAAGGGACAACAA 60.134 47.619 7.20 0.00 46.65 2.83
3780 7916 6.115446 AGGAAAGCGTGATAGATGAATGAAA 58.885 36.000 0.00 0.00 0.00 2.69
3930 8548 8.880750 GGAGGTAGTACATTAGAACAATTTGAC 58.119 37.037 2.79 0.00 0.00 3.18
3976 8594 9.797556 CGGTCGTATATAGATGAAATATCCAAA 57.202 33.333 0.00 0.00 0.00 3.28
3977 8595 9.181061 TCGGTCGTATATAGATGAAATATCCAA 57.819 33.333 0.00 0.00 0.00 3.53
3978 8596 8.741603 TCGGTCGTATATAGATGAAATATCCA 57.258 34.615 0.00 0.00 0.00 3.41
3979 8597 9.828852 GATCGGTCGTATATAGATGAAATATCC 57.171 37.037 0.00 0.00 0.00 2.59
3983 8601 9.833917 TCTAGATCGGTCGTATATAGATGAAAT 57.166 33.333 0.00 0.00 0.00 2.17
3984 8602 9.662947 TTCTAGATCGGTCGTATATAGATGAAA 57.337 33.333 0.00 0.00 29.77 2.69
3985 8603 9.662947 TTTCTAGATCGGTCGTATATAGATGAA 57.337 33.333 0.00 0.00 29.77 2.57
3986 8604 9.662947 TTTTCTAGATCGGTCGTATATAGATGA 57.337 33.333 0.00 0.00 29.77 2.92
4012 8630 9.739276 TCACAATTATAAGGATGTTCTGACTTT 57.261 29.630 0.00 0.00 0.00 2.66
4013 8631 9.739276 TTCACAATTATAAGGATGTTCTGACTT 57.261 29.630 0.00 0.00 0.00 3.01
4014 8632 9.167311 GTTCACAATTATAAGGATGTTCTGACT 57.833 33.333 0.00 0.00 0.00 3.41
4015 8633 8.116753 CGTTCACAATTATAAGGATGTTCTGAC 58.883 37.037 0.00 0.00 0.00 3.51
4016 8634 8.038351 TCGTTCACAATTATAAGGATGTTCTGA 58.962 33.333 0.00 0.00 0.00 3.27
4017 8635 8.196802 TCGTTCACAATTATAAGGATGTTCTG 57.803 34.615 0.00 0.00 0.00 3.02
4018 8636 8.786826 TTCGTTCACAATTATAAGGATGTTCT 57.213 30.769 0.00 0.00 0.00 3.01
4019 8637 8.122952 CCTTCGTTCACAATTATAAGGATGTTC 58.877 37.037 0.00 0.00 35.14 3.18
4020 8638 7.067008 CCCTTCGTTCACAATTATAAGGATGTT 59.933 37.037 0.00 0.00 35.14 2.71
4021 8639 6.542370 CCCTTCGTTCACAATTATAAGGATGT 59.458 38.462 0.00 0.00 35.14 3.06
4022 8640 6.765989 TCCCTTCGTTCACAATTATAAGGATG 59.234 38.462 0.00 0.00 35.14 3.51
4023 8641 6.895782 TCCCTTCGTTCACAATTATAAGGAT 58.104 36.000 0.00 0.00 35.14 3.24
4024 8642 6.070424 ACTCCCTTCGTTCACAATTATAAGGA 60.070 38.462 0.00 0.00 35.14 3.36
4025 8643 6.113411 ACTCCCTTCGTTCACAATTATAAGG 58.887 40.000 0.00 0.00 33.37 2.69
4026 8644 7.980099 ACTACTCCCTTCGTTCACAATTATAAG 59.020 37.037 0.00 0.00 0.00 1.73
4027 8645 7.844009 ACTACTCCCTTCGTTCACAATTATAA 58.156 34.615 0.00 0.00 0.00 0.98
4028 8646 7.414222 ACTACTCCCTTCGTTCACAATTATA 57.586 36.000 0.00 0.00 0.00 0.98
4029 8647 6.295719 ACTACTCCCTTCGTTCACAATTAT 57.704 37.500 0.00 0.00 0.00 1.28
4030 8648 5.733620 ACTACTCCCTTCGTTCACAATTA 57.266 39.130 0.00 0.00 0.00 1.40
4031 8649 4.618920 ACTACTCCCTTCGTTCACAATT 57.381 40.909 0.00 0.00 0.00 2.32
4032 8650 4.283722 AGAACTACTCCCTTCGTTCACAAT 59.716 41.667 0.00 0.00 38.50 2.71
4033 8651 3.640029 AGAACTACTCCCTTCGTTCACAA 59.360 43.478 0.00 0.00 38.50 3.33
4034 8652 3.005472 CAGAACTACTCCCTTCGTTCACA 59.995 47.826 0.00 0.00 38.50 3.58
4035 8653 3.005578 ACAGAACTACTCCCTTCGTTCAC 59.994 47.826 0.00 0.00 38.50 3.18
4036 8654 3.228453 ACAGAACTACTCCCTTCGTTCA 58.772 45.455 0.00 0.00 38.50 3.18
4037 8655 3.938289 ACAGAACTACTCCCTTCGTTC 57.062 47.619 0.00 0.00 36.81 3.95
4038 8656 4.405548 AGTACAGAACTACTCCCTTCGTT 58.594 43.478 0.00 0.00 36.36 3.85
4039 8657 4.009002 GAGTACAGAACTACTCCCTTCGT 58.991 47.826 0.00 0.00 39.07 3.85
4040 8658 4.008330 TGAGTACAGAACTACTCCCTTCG 58.992 47.826 0.00 0.00 41.40 3.79
4041 8659 6.532988 AATGAGTACAGAACTACTCCCTTC 57.467 41.667 0.00 0.00 41.40 3.46
4042 8660 6.936968 AAATGAGTACAGAACTACTCCCTT 57.063 37.500 0.00 0.00 41.40 3.95
4043 8661 8.062536 AGATAAATGAGTACAGAACTACTCCCT 58.937 37.037 0.00 0.00 41.40 4.20
4044 8662 8.240267 AGATAAATGAGTACAGAACTACTCCC 57.760 38.462 0.00 0.00 41.40 4.30
4070 8688 6.000219 AGACAAGTGATACAAGCAGATTTGT 59.000 36.000 0.00 0.00 43.34 2.83
4077 8695 3.660501 ACGAGACAAGTGATACAAGCA 57.339 42.857 0.00 0.00 0.00 3.91
4082 8700 5.633601 TGACAATCAACGAGACAAGTGATAC 59.366 40.000 0.00 0.00 0.00 2.24
4103 8721 3.253188 TGCTTATTCAGGTGCAAGTTGAC 59.747 43.478 7.16 2.08 32.12 3.18
4147 8765 1.134367 GCAATCGAAAGGGGTAAAGCC 59.866 52.381 0.00 0.00 0.00 4.35
4148 8766 1.816224 TGCAATCGAAAGGGGTAAAGC 59.184 47.619 0.00 0.00 0.00 3.51
4149 8767 5.123227 TCTATGCAATCGAAAGGGGTAAAG 58.877 41.667 0.00 0.00 0.00 1.85
4150 8768 5.105567 TCTATGCAATCGAAAGGGGTAAA 57.894 39.130 0.00 0.00 0.00 2.01
4151 8769 4.764050 TCTATGCAATCGAAAGGGGTAA 57.236 40.909 0.00 0.00 0.00 2.85
4152 8770 4.448210 GTTCTATGCAATCGAAAGGGGTA 58.552 43.478 0.00 0.00 29.22 3.69
4153 8771 3.279434 GTTCTATGCAATCGAAAGGGGT 58.721 45.455 0.00 0.00 29.22 4.95
4154 8772 2.287915 CGTTCTATGCAATCGAAAGGGG 59.712 50.000 0.00 0.00 29.22 4.79
4155 8773 2.287915 CCGTTCTATGCAATCGAAAGGG 59.712 50.000 15.27 8.80 41.61 3.95
4156 8774 3.194861 TCCGTTCTATGCAATCGAAAGG 58.805 45.455 16.29 16.29 44.86 3.11
4157 8775 4.857871 TTCCGTTCTATGCAATCGAAAG 57.142 40.909 0.00 0.00 29.22 2.62
4158 8776 5.811399 ATTTCCGTTCTATGCAATCGAAA 57.189 34.783 0.00 0.00 29.22 3.46
4159 8777 5.813157 TGTATTTCCGTTCTATGCAATCGAA 59.187 36.000 0.00 0.00 0.00 3.71
4160 8778 5.353111 TGTATTTCCGTTCTATGCAATCGA 58.647 37.500 0.00 0.00 0.00 3.59
4161 8779 5.651172 TGTATTTCCGTTCTATGCAATCG 57.349 39.130 0.00 0.00 0.00 3.34
4162 8780 6.038271 AGGTTGTATTTCCGTTCTATGCAATC 59.962 38.462 0.00 0.00 0.00 2.67
4163 8781 5.885912 AGGTTGTATTTCCGTTCTATGCAAT 59.114 36.000 0.00 0.00 0.00 3.56
4164 8782 5.250200 AGGTTGTATTTCCGTTCTATGCAA 58.750 37.500 0.00 0.00 0.00 4.08
4165 8783 4.839121 AGGTTGTATTTCCGTTCTATGCA 58.161 39.130 0.00 0.00 0.00 3.96
4166 8784 6.018180 CCTTAGGTTGTATTTCCGTTCTATGC 60.018 42.308 0.00 0.00 0.00 3.14
4167 8785 6.018180 GCCTTAGGTTGTATTTCCGTTCTATG 60.018 42.308 0.00 0.00 0.00 2.23
4168 8786 6.053650 GCCTTAGGTTGTATTTCCGTTCTAT 58.946 40.000 0.00 0.00 0.00 1.98
4169 8787 5.046448 TGCCTTAGGTTGTATTTCCGTTCTA 60.046 40.000 0.00 0.00 0.00 2.10
4170 8788 4.259356 GCCTTAGGTTGTATTTCCGTTCT 58.741 43.478 0.00 0.00 0.00 3.01
4171 8789 4.004982 TGCCTTAGGTTGTATTTCCGTTC 58.995 43.478 0.00 0.00 0.00 3.95
4172 8790 4.007659 CTGCCTTAGGTTGTATTTCCGTT 58.992 43.478 0.00 0.00 0.00 4.44
4173 8791 3.606687 CTGCCTTAGGTTGTATTTCCGT 58.393 45.455 0.00 0.00 0.00 4.69
4174 8792 2.943033 CCTGCCTTAGGTTGTATTTCCG 59.057 50.000 0.00 0.00 42.00 4.30
4186 8804 5.283457 AGCAGTTATAAGACCTGCCTTAG 57.717 43.478 18.11 0.00 41.46 2.18
4187 8805 5.693769 AAGCAGTTATAAGACCTGCCTTA 57.306 39.130 18.11 0.00 41.46 2.69
4188 8806 4.576330 AAGCAGTTATAAGACCTGCCTT 57.424 40.909 18.11 11.46 41.46 4.35
4189 8807 4.019321 TGAAAGCAGTTATAAGACCTGCCT 60.019 41.667 18.11 7.21 41.46 4.75
4190 8808 4.261801 TGAAAGCAGTTATAAGACCTGCC 58.738 43.478 18.11 8.01 41.46 4.85
4191 8809 5.731686 GCATGAAAGCAGTTATAAGACCTGC 60.732 44.000 15.33 15.33 40.91 4.85
4192 8810 5.355071 TGCATGAAAGCAGTTATAAGACCTG 59.645 40.000 0.00 0.00 40.11 4.00
4193 8811 5.500234 TGCATGAAAGCAGTTATAAGACCT 58.500 37.500 0.00 0.00 40.11 3.85
4194 8812 5.818136 TGCATGAAAGCAGTTATAAGACC 57.182 39.130 0.00 0.00 40.11 3.85
4248 8867 3.072944 CTTAGCATCAGGGCTATCAAGC 58.927 50.000 0.00 0.00 45.18 4.01
4249 8868 3.072184 ACCTTAGCATCAGGGCTATCAAG 59.928 47.826 0.00 0.00 45.18 3.02
4250 8869 3.048600 ACCTTAGCATCAGGGCTATCAA 58.951 45.455 0.00 0.00 45.18 2.57
4252 8871 5.428184 AATACCTTAGCATCAGGGCTATC 57.572 43.478 0.00 0.00 45.18 2.08
4253 8872 5.280727 GGAAATACCTTAGCATCAGGGCTAT 60.281 44.000 0.00 0.00 45.18 2.97
4254 8873 4.041691 GGAAATACCTTAGCATCAGGGCTA 59.958 45.833 0.00 0.00 44.25 3.93
4256 8875 3.149981 GGAAATACCTTAGCATCAGGGC 58.850 50.000 1.35 0.00 35.46 5.19
4299 8927 2.292292 GGAAAAACAAGCAGGTAAGCGA 59.708 45.455 0.00 0.00 40.15 4.93
4350 8978 3.490439 TGTTGCTCCAAGAGAATCACA 57.510 42.857 0.00 0.00 37.82 3.58
4364 8993 3.990092 TGACACGAGAAAGTATGTTGCT 58.010 40.909 0.00 0.00 0.00 3.91
4380 9009 8.547894 TGCTTCACGATTATATTACAATGACAC 58.452 33.333 0.00 0.00 0.00 3.67
4381 9010 8.655651 TGCTTCACGATTATATTACAATGACA 57.344 30.769 0.00 0.00 0.00 3.58
4393 9022 7.494298 TGTGTTGTATGTATGCTTCACGATTAT 59.506 33.333 0.00 0.00 0.00 1.28
4394 9023 6.814146 TGTGTTGTATGTATGCTTCACGATTA 59.186 34.615 0.00 0.00 0.00 1.75
4395 9024 5.641636 TGTGTTGTATGTATGCTTCACGATT 59.358 36.000 0.00 0.00 0.00 3.34
4396 9025 5.175127 TGTGTTGTATGTATGCTTCACGAT 58.825 37.500 0.00 0.00 0.00 3.73
4397 9026 4.561105 TGTGTTGTATGTATGCTTCACGA 58.439 39.130 0.00 0.00 0.00 4.35
4398 9027 4.919677 TGTGTTGTATGTATGCTTCACG 57.080 40.909 0.00 0.00 0.00 4.35
4399 9028 9.061610 GTTTATTGTGTTGTATGTATGCTTCAC 57.938 33.333 0.00 0.00 0.00 3.18
4400 9029 8.787852 TGTTTATTGTGTTGTATGTATGCTTCA 58.212 29.630 0.00 0.00 0.00 3.02
4401 9030 9.619316 TTGTTTATTGTGTTGTATGTATGCTTC 57.381 29.630 0.00 0.00 0.00 3.86
4403 9032 9.571810 CATTGTTTATTGTGTTGTATGTATGCT 57.428 29.630 0.00 0.00 0.00 3.79
4404 9033 8.320295 GCATTGTTTATTGTGTTGTATGTATGC 58.680 33.333 0.00 0.00 0.00 3.14
4405 9034 8.806634 GGCATTGTTTATTGTGTTGTATGTATG 58.193 33.333 0.00 0.00 0.00 2.39
4415 9044 5.163468 TGTTCACTGGCATTGTTTATTGTGT 60.163 36.000 4.67 0.00 0.00 3.72
4421 9050 3.317711 CAGGTGTTCACTGGCATTGTTTA 59.682 43.478 4.67 0.00 32.38 2.01
4424 9053 1.321474 CAGGTGTTCACTGGCATTGT 58.679 50.000 4.67 0.00 32.38 2.71
4433 9062 5.008613 TCAAACTTCTTATGCAGGTGTTCAC 59.991 40.000 0.00 0.00 0.00 3.18
4449 9078 9.541143 TTTTGGGACTATGAATTTTCAAACTTC 57.459 29.630 0.00 0.00 41.13 3.01
4468 9097 1.905843 CCGTGCCATGGTTTTGGGA 60.906 57.895 14.67 0.00 37.24 4.37
4469 9098 2.656055 CCGTGCCATGGTTTTGGG 59.344 61.111 14.67 4.39 37.24 4.12
4482 9111 2.609459 GCTCTTGTGACATATTCCCGTG 59.391 50.000 0.00 0.00 0.00 4.94
4485 9114 4.453819 GCATAGCTCTTGTGACATATTCCC 59.546 45.833 0.00 0.00 0.00 3.97
4487 9116 5.049818 GGTGCATAGCTCTTGTGACATATTC 60.050 44.000 0.00 0.00 0.00 1.75
4493 9122 2.393271 AGGTGCATAGCTCTTGTGAC 57.607 50.000 0.00 0.00 0.00 3.67
4499 9128 2.370189 GGTCCATTAGGTGCATAGCTCT 59.630 50.000 0.00 0.00 35.90 4.09
4506 9135 2.897271 AATGTGGTCCATTAGGTGCA 57.103 45.000 0.00 0.00 42.03 4.57
4513 9142 8.219868 TGTCTCATGATATTAATGTGGTCCATT 58.780 33.333 0.00 0.00 45.68 3.16
4519 9152 8.676401 TGTTTGTGTCTCATGATATTAATGTGG 58.324 33.333 0.00 0.00 0.00 4.17
4533 9166 9.500785 TTTCTTGTATGATATGTTTGTGTCTCA 57.499 29.630 0.00 0.00 0.00 3.27
4597 9232 5.801380 AGATGAAGAGCCATTTGCATTTTT 58.199 33.333 0.00 0.00 44.83 1.94
4610 9245 8.608317 GTTGGTTAGAGAAAATAGATGAAGAGC 58.392 37.037 0.00 0.00 0.00 4.09
4621 9256 7.373493 CAATGCTTCTGTTGGTTAGAGAAAAT 58.627 34.615 0.00 0.00 35.89 1.82
4659 9300 7.309377 GGTTGATTGAGTTTTGATGAGGAATCA 60.309 37.037 0.00 0.00 43.79 2.57
4661 9302 6.349611 CGGTTGATTGAGTTTTGATGAGGAAT 60.350 38.462 0.00 0.00 0.00 3.01
4668 9309 4.340950 ACAACCGGTTGATTGAGTTTTGAT 59.659 37.500 45.25 21.16 42.93 2.57
4673 9314 3.697045 TGAAACAACCGGTTGATTGAGTT 59.303 39.130 45.25 28.43 42.93 3.01
4684 9325 3.224884 ACAAACAAGTGAAACAACCGG 57.775 42.857 0.00 0.00 41.43 5.28
4687 9328 3.930229 GGGGAACAAACAAGTGAAACAAC 59.070 43.478 0.00 0.00 41.43 3.32
4688 9329 3.578716 TGGGGAACAAACAAGTGAAACAA 59.421 39.130 0.00 0.00 41.43 2.83
4693 9334 3.221771 CTCATGGGGAACAAACAAGTGA 58.778 45.455 0.00 0.00 0.00 3.41
4694 9335 2.297033 CCTCATGGGGAACAAACAAGTG 59.703 50.000 5.34 0.00 0.00 3.16
4695 9336 2.597455 CCTCATGGGGAACAAACAAGT 58.403 47.619 5.34 0.00 0.00 3.16
4696 9337 1.273327 GCCTCATGGGGAACAAACAAG 59.727 52.381 18.46 0.00 35.12 3.16
4697 9338 1.337118 GCCTCATGGGGAACAAACAA 58.663 50.000 18.46 0.00 35.12 2.83
4698 9339 0.187117 TGCCTCATGGGGAACAAACA 59.813 50.000 18.46 0.00 35.12 2.83
4699 9340 1.560505 ATGCCTCATGGGGAACAAAC 58.439 50.000 18.46 0.00 39.39 2.93
4700 9341 1.901159 CAATGCCTCATGGGGAACAAA 59.099 47.619 18.46 0.00 39.39 2.83
4701 9342 1.076841 TCAATGCCTCATGGGGAACAA 59.923 47.619 18.46 0.00 39.39 2.83
4702 9343 0.703488 TCAATGCCTCATGGGGAACA 59.297 50.000 18.46 4.82 39.39 3.18
4703 9344 1.478105 GTTCAATGCCTCATGGGGAAC 59.522 52.381 18.46 6.59 39.39 3.62
4704 9345 1.358787 AGTTCAATGCCTCATGGGGAA 59.641 47.619 18.46 4.65 39.39 3.97
4705 9346 1.002069 AGTTCAATGCCTCATGGGGA 58.998 50.000 18.46 6.32 40.52 4.81
4706 9347 1.856629 AAGTTCAATGCCTCATGGGG 58.143 50.000 7.48 7.48 35.12 4.96
4707 9348 2.827322 TCAAAGTTCAATGCCTCATGGG 59.173 45.455 0.00 0.00 38.36 4.00
4708 9349 4.491676 CTTCAAAGTTCAATGCCTCATGG 58.508 43.478 0.00 0.00 0.00 3.66
4709 9350 3.924686 GCTTCAAAGTTCAATGCCTCATG 59.075 43.478 0.00 0.00 0.00 3.07
4710 9351 3.366679 CGCTTCAAAGTTCAATGCCTCAT 60.367 43.478 0.00 0.00 0.00 2.90
4711 9352 2.030893 CGCTTCAAAGTTCAATGCCTCA 60.031 45.455 0.00 0.00 0.00 3.86
4712 9353 2.589014 CGCTTCAAAGTTCAATGCCTC 58.411 47.619 0.00 0.00 0.00 4.70
4713 9354 1.270550 CCGCTTCAAAGTTCAATGCCT 59.729 47.619 0.00 0.00 0.00 4.75
4714 9355 1.000274 ACCGCTTCAAAGTTCAATGCC 60.000 47.619 0.00 0.00 0.00 4.40
4715 9356 2.053627 CACCGCTTCAAAGTTCAATGC 58.946 47.619 0.00 0.00 0.00 3.56
4716 9357 2.053627 GCACCGCTTCAAAGTTCAATG 58.946 47.619 0.00 0.00 0.00 2.82
4717 9358 1.680735 TGCACCGCTTCAAAGTTCAAT 59.319 42.857 0.00 0.00 0.00 2.57
4718 9359 1.098869 TGCACCGCTTCAAAGTTCAA 58.901 45.000 0.00 0.00 0.00 2.69
4719 9360 0.380378 GTGCACCGCTTCAAAGTTCA 59.620 50.000 5.22 0.00 0.00 3.18
4720 9361 0.317854 GGTGCACCGCTTCAAAGTTC 60.318 55.000 22.49 0.00 0.00 3.01
4721 9362 1.034838 TGGTGCACCGCTTCAAAGTT 61.035 50.000 30.07 0.00 39.43 2.66
4722 9363 0.823356 ATGGTGCACCGCTTCAAAGT 60.823 50.000 30.07 5.21 39.43 2.66
4723 9364 0.109597 GATGGTGCACCGCTTCAAAG 60.110 55.000 30.07 0.00 39.43 2.77
4724 9365 1.523154 GGATGGTGCACCGCTTCAAA 61.523 55.000 30.07 11.94 39.43 2.69
4725 9366 1.971167 GGATGGTGCACCGCTTCAA 60.971 57.895 30.07 12.73 39.43 2.69
4726 9367 2.359850 GGATGGTGCACCGCTTCA 60.360 61.111 30.07 13.52 39.43 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.