Multiple sequence alignment - TraesCS2A01G479100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G479100 chr2A 100.000 3496 0 0 1 3496 717418690 717422185 0.000000e+00 6457
1 TraesCS2A01G479100 chr2A 85.549 173 19 5 707 876 104980917 104980748 3.590000e-40 176
2 TraesCS2A01G479100 chr2D 94.955 1903 70 8 706 2600 579821739 579823623 0.000000e+00 2959
3 TraesCS2A01G479100 chr2D 94.578 498 25 1 2999 3496 579823801 579824296 0.000000e+00 769
4 TraesCS2A01G479100 chr2D 91.438 292 23 2 2699 2989 648245389 648245099 1.950000e-107 399
5 TraesCS2A01G479100 chr2D 82.965 452 49 12 4 449 579816183 579816612 1.970000e-102 383
6 TraesCS2A01G479100 chr2D 93.069 101 7 0 2599 2699 579823701 579823801 7.820000e-32 148
7 TraesCS2A01G479100 chr2B 90.820 1928 89 30 706 2601 697767071 697768942 0.000000e+00 2499
8 TraesCS2A01G479100 chr2B 81.897 580 68 14 145 694 697764069 697764641 4.110000e-124 455
9 TraesCS2A01G479100 chr2B 79.080 435 47 25 706 1115 158778083 158777668 3.460000e-65 259
10 TraesCS2A01G479100 chr1A 94.225 935 43 6 847 1781 156549117 156550040 0.000000e+00 1417
11 TraesCS2A01G479100 chr1A 87.611 113 13 1 2600 2711 584507846 584507958 2.830000e-26 130
12 TraesCS2A01G479100 chr5A 93.286 283 18 1 2705 2986 618432459 618432177 1.940000e-112 416
13 TraesCS2A01G479100 chr3A 92.414 290 21 1 2701 2989 648881539 648881250 2.510000e-111 412
14 TraesCS2A01G479100 chr3A 92.334 287 21 1 2703 2988 703773265 703772979 1.170000e-109 407
15 TraesCS2A01G479100 chr3A 92.308 286 22 0 2705 2990 709929673 709929958 1.170000e-109 407
16 TraesCS2A01G479100 chr3A 90.196 102 10 0 2600 2701 629049325 629049426 2.190000e-27 134
17 TraesCS2A01G479100 chr7B 92.334 287 21 1 2705 2990 734380390 734380104 1.170000e-109 407
18 TraesCS2A01G479100 chr5B 92.334 287 21 1 2703 2988 43141338 43141052 1.170000e-109 407
19 TraesCS2A01G479100 chr4A 92.361 288 19 3 2705 2989 690617582 690617295 1.170000e-109 407
20 TraesCS2A01G479100 chr1D 91.986 287 22 1 2703 2988 349468403 349468689 5.440000e-108 401
21 TraesCS2A01G479100 chr1D 84.071 113 15 3 2600 2710 90635671 90635782 4.770000e-19 106
22 TraesCS2A01G479100 chr1D 85.047 107 13 3 2606 2710 307448092 307447987 4.770000e-19 106
23 TraesCS2A01G479100 chr3B 87.619 105 13 0 2606 2710 744582106 744582002 4.740000e-24 122
24 TraesCS2A01G479100 chr3B 89.583 96 10 0 2606 2701 746863145 746863240 4.740000e-24 122
25 TraesCS2A01G479100 chr3D 88.119 101 12 0 2601 2701 560322759 560322659 1.700000e-23 121
26 TraesCS2A01G479100 chr1B 85.849 106 14 1 2606 2710 42060404 42060299 1.030000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G479100 chr2A 717418690 717422185 3495 False 6457 6457 100.000000 1 3496 1 chr2A.!!$F1 3495
1 TraesCS2A01G479100 chr2D 579821739 579824296 2557 False 1292 2959 94.200667 706 3496 3 chr2D.!!$F2 2790
2 TraesCS2A01G479100 chr2B 697764069 697768942 4873 False 1477 2499 86.358500 145 2601 2 chr2B.!!$F1 2456
3 TraesCS2A01G479100 chr1A 156549117 156550040 923 False 1417 1417 94.225000 847 1781 1 chr1A.!!$F1 934

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
326 330 0.105039 AGTGCCCATTAGCGAGCTAC 59.895 55.0 4.05 0.0 34.65 3.58 F
423 427 0.396974 AGCTTGGGTGCAAAGGTTCA 60.397 50.0 0.00 0.0 31.52 3.18 F
1982 4472 0.110056 CTGCGTGATTGTTGCCTGAC 60.110 55.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1707 4191 1.135939 GCAAAATCGTACACGCCCC 59.864 57.895 0.00 0.0 39.60 5.80 R
2041 4531 1.266446 TGGAACATGCGTGAATGTGTG 59.734 47.619 14.17 0.0 39.89 3.82 R
2988 5563 0.107654 ACTCCAATCTTACGCCCTGC 60.108 55.000 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.978343 ATCATTCTTTGAATGTTGCATTGG 57.022 33.333 16.66 0.00 38.03 3.16
25 26 4.691685 TCATTCTTTGAATGTTGCATTGGC 59.308 37.500 16.66 0.00 41.68 4.52
26 27 3.042871 TCTTTGAATGTTGCATTGGCC 57.957 42.857 0.00 0.00 40.13 5.36
27 28 2.367894 TCTTTGAATGTTGCATTGGCCA 59.632 40.909 0.00 0.00 40.13 5.36
28 29 2.166821 TTGAATGTTGCATTGGCCAC 57.833 45.000 3.88 0.00 40.13 5.01
29 30 0.321021 TGAATGTTGCATTGGCCACC 59.679 50.000 3.88 0.00 40.13 4.61
30 31 0.609662 GAATGTTGCATTGGCCACCT 59.390 50.000 3.88 0.00 40.13 4.00
31 32 0.609662 AATGTTGCATTGGCCACCTC 59.390 50.000 3.88 0.00 40.13 3.85
32 33 1.259840 ATGTTGCATTGGCCACCTCC 61.260 55.000 3.88 0.00 40.13 4.30
33 34 1.907807 GTTGCATTGGCCACCTCCA 60.908 57.895 3.88 0.00 40.13 3.86
34 35 1.907807 TTGCATTGGCCACCTCCAC 60.908 57.895 3.88 0.00 40.13 4.02
35 36 2.036256 GCATTGGCCACCTCCACT 59.964 61.111 3.88 0.00 35.50 4.00
36 37 1.302949 GCATTGGCCACCTCCACTA 59.697 57.895 3.88 0.00 35.50 2.74
37 38 1.032114 GCATTGGCCACCTCCACTAC 61.032 60.000 3.88 0.00 35.50 2.73
38 39 0.394352 CATTGGCCACCTCCACTACC 60.394 60.000 3.88 0.00 35.50 3.18
39 40 0.844661 ATTGGCCACCTCCACTACCA 60.845 55.000 3.88 0.00 35.50 3.25
40 41 1.063070 TTGGCCACCTCCACTACCAA 61.063 55.000 3.88 0.00 35.50 3.67
41 42 1.063070 TGGCCACCTCCACTACCAAA 61.063 55.000 0.00 0.00 0.00 3.28
42 43 0.111639 GGCCACCTCCACTACCAAAA 59.888 55.000 0.00 0.00 0.00 2.44
43 44 1.244816 GCCACCTCCACTACCAAAAC 58.755 55.000 0.00 0.00 0.00 2.43
44 45 1.477923 GCCACCTCCACTACCAAAACA 60.478 52.381 0.00 0.00 0.00 2.83
45 46 2.817839 GCCACCTCCACTACCAAAACAT 60.818 50.000 0.00 0.00 0.00 2.71
46 47 3.560453 GCCACCTCCACTACCAAAACATA 60.560 47.826 0.00 0.00 0.00 2.29
47 48 4.855340 CCACCTCCACTACCAAAACATAT 58.145 43.478 0.00 0.00 0.00 1.78
48 49 5.261216 CCACCTCCACTACCAAAACATATT 58.739 41.667 0.00 0.00 0.00 1.28
49 50 5.714806 CCACCTCCACTACCAAAACATATTT 59.285 40.000 0.00 0.00 0.00 1.40
50 51 6.210584 CCACCTCCACTACCAAAACATATTTT 59.789 38.462 0.00 0.00 38.61 1.82
51 52 7.312899 CACCTCCACTACCAAAACATATTTTC 58.687 38.462 0.00 0.00 35.79 2.29
52 53 7.007723 ACCTCCACTACCAAAACATATTTTCA 58.992 34.615 0.00 0.00 35.79 2.69
53 54 7.673926 ACCTCCACTACCAAAACATATTTTCAT 59.326 33.333 0.00 0.00 35.79 2.57
54 55 8.190784 CCTCCACTACCAAAACATATTTTCATC 58.809 37.037 0.00 0.00 35.79 2.92
55 56 8.642935 TCCACTACCAAAACATATTTTCATCA 57.357 30.769 0.00 0.00 35.79 3.07
56 57 8.519526 TCCACTACCAAAACATATTTTCATCAC 58.480 33.333 0.00 0.00 35.79 3.06
57 58 8.303156 CCACTACCAAAACATATTTTCATCACA 58.697 33.333 0.00 0.00 35.79 3.58
58 59 9.345517 CACTACCAAAACATATTTTCATCACAG 57.654 33.333 0.00 0.00 35.79 3.66
59 60 9.077885 ACTACCAAAACATATTTTCATCACAGT 57.922 29.630 0.00 0.00 35.79 3.55
60 61 9.559958 CTACCAAAACATATTTTCATCACAGTC 57.440 33.333 0.00 0.00 35.79 3.51
61 62 7.083858 ACCAAAACATATTTTCATCACAGTCG 58.916 34.615 0.00 0.00 35.79 4.18
62 63 7.083858 CCAAAACATATTTTCATCACAGTCGT 58.916 34.615 0.00 0.00 35.79 4.34
63 64 7.060979 CCAAAACATATTTTCATCACAGTCGTG 59.939 37.037 0.00 0.00 39.04 4.35
64 65 6.801539 AACATATTTTCATCACAGTCGTGT 57.198 33.333 0.00 0.00 44.02 4.49
65 66 7.591057 AAAACATATTTTCATCACAGTCGTGTG 59.409 33.333 0.00 0.00 43.61 3.82
76 77 1.787155 CAGTCGTGTGTTCTACTGTGC 59.213 52.381 0.00 0.00 35.66 4.57
77 78 1.137513 GTCGTGTGTTCTACTGTGCC 58.862 55.000 0.00 0.00 0.00 5.01
78 79 0.318360 TCGTGTGTTCTACTGTGCCG 60.318 55.000 0.00 0.00 0.00 5.69
79 80 0.318360 CGTGTGTTCTACTGTGCCGA 60.318 55.000 0.00 0.00 0.00 5.54
80 81 1.668919 CGTGTGTTCTACTGTGCCGAT 60.669 52.381 0.00 0.00 0.00 4.18
81 82 1.726791 GTGTGTTCTACTGTGCCGATG 59.273 52.381 0.00 0.00 0.00 3.84
82 83 1.616374 TGTGTTCTACTGTGCCGATGA 59.384 47.619 0.00 0.00 0.00 2.92
83 84 2.263077 GTGTTCTACTGTGCCGATGAG 58.737 52.381 0.00 0.00 0.00 2.90
84 85 2.094700 GTGTTCTACTGTGCCGATGAGA 60.095 50.000 0.00 0.00 0.00 3.27
85 86 2.094700 TGTTCTACTGTGCCGATGAGAC 60.095 50.000 0.00 0.00 0.00 3.36
86 87 2.130272 TCTACTGTGCCGATGAGACT 57.870 50.000 0.00 0.00 0.00 3.24
87 88 1.745653 TCTACTGTGCCGATGAGACTG 59.254 52.381 0.00 0.00 0.00 3.51
88 89 1.474478 CTACTGTGCCGATGAGACTGT 59.526 52.381 0.00 0.00 0.00 3.55
89 90 0.681733 ACTGTGCCGATGAGACTGTT 59.318 50.000 0.00 0.00 0.00 3.16
90 91 1.073964 CTGTGCCGATGAGACTGTTG 58.926 55.000 0.00 0.00 0.00 3.33
91 92 0.678950 TGTGCCGATGAGACTGTTGA 59.321 50.000 0.00 0.00 0.00 3.18
92 93 1.071605 GTGCCGATGAGACTGTTGAC 58.928 55.000 0.00 0.00 0.00 3.18
93 94 0.678950 TGCCGATGAGACTGTTGACA 59.321 50.000 0.00 0.00 0.00 3.58
94 95 1.071605 GCCGATGAGACTGTTGACAC 58.928 55.000 0.00 0.00 0.00 3.67
95 96 1.605457 GCCGATGAGACTGTTGACACA 60.605 52.381 0.00 0.00 0.00 3.72
96 97 2.932622 GCCGATGAGACTGTTGACACAT 60.933 50.000 0.00 0.00 30.39 3.21
97 98 2.926200 CCGATGAGACTGTTGACACATC 59.074 50.000 0.00 0.00 34.67 3.06
98 99 3.367806 CCGATGAGACTGTTGACACATCT 60.368 47.826 0.00 3.12 35.34 2.90
99 100 4.240888 CGATGAGACTGTTGACACATCTT 58.759 43.478 0.00 0.00 35.34 2.40
100 101 4.325741 CGATGAGACTGTTGACACATCTTC 59.674 45.833 0.00 3.10 35.34 2.87
101 102 3.995199 TGAGACTGTTGACACATCTTCC 58.005 45.455 0.00 0.00 30.39 3.46
102 103 3.643320 TGAGACTGTTGACACATCTTCCT 59.357 43.478 0.00 0.00 30.39 3.36
103 104 4.241681 GAGACTGTTGACACATCTTCCTC 58.758 47.826 0.00 0.00 30.39 3.71
104 105 2.989840 GACTGTTGACACATCTTCCTCG 59.010 50.000 0.00 0.00 30.39 4.63
105 106 2.628178 ACTGTTGACACATCTTCCTCGA 59.372 45.455 0.00 0.00 30.39 4.04
106 107 2.989840 CTGTTGACACATCTTCCTCGAC 59.010 50.000 0.00 0.00 30.39 4.20
107 108 2.288825 TGTTGACACATCTTCCTCGACC 60.289 50.000 0.00 0.00 0.00 4.79
108 109 0.526211 TGACACATCTTCCTCGACCG 59.474 55.000 0.00 0.00 0.00 4.79
109 110 0.526662 GACACATCTTCCTCGACCGT 59.473 55.000 0.00 0.00 0.00 4.83
110 111 0.243907 ACACATCTTCCTCGACCGTG 59.756 55.000 0.00 0.00 0.00 4.94
111 112 1.078759 CACATCTTCCTCGACCGTGC 61.079 60.000 0.00 0.00 0.00 5.34
112 113 1.874019 CATCTTCCTCGACCGTGCG 60.874 63.158 0.00 0.00 0.00 5.34
113 114 3.701604 ATCTTCCTCGACCGTGCGC 62.702 63.158 0.00 0.00 0.00 6.09
114 115 4.421479 CTTCCTCGACCGTGCGCT 62.421 66.667 9.73 0.00 0.00 5.92
115 116 4.415332 TTCCTCGACCGTGCGCTC 62.415 66.667 9.73 3.51 0.00 5.03
118 119 4.700365 CTCGACCGTGCGCTCACA 62.700 66.667 9.73 0.00 43.28 3.58
119 120 3.971453 CTCGACCGTGCGCTCACAT 62.971 63.158 9.73 0.00 43.28 3.21
120 121 3.842126 CGACCGTGCGCTCACATG 61.842 66.667 9.73 0.00 43.28 3.21
121 122 4.152625 GACCGTGCGCTCACATGC 62.153 66.667 9.73 0.00 43.28 4.06
122 123 4.986645 ACCGTGCGCTCACATGCA 62.987 61.111 9.73 0.00 43.28 3.96
123 124 3.725459 CCGTGCGCTCACATGCAA 61.725 61.111 9.73 0.00 43.75 4.08
124 125 2.481919 CGTGCGCTCACATGCAAT 59.518 55.556 9.73 0.00 43.75 3.56
125 126 1.154169 CGTGCGCTCACATGCAATT 60.154 52.632 9.73 0.00 43.75 2.32
126 127 0.730155 CGTGCGCTCACATGCAATTT 60.730 50.000 9.73 0.00 43.75 1.82
127 128 0.711670 GTGCGCTCACATGCAATTTG 59.288 50.000 9.73 0.00 43.75 2.32
128 129 0.388778 TGCGCTCACATGCAATTTGG 60.389 50.000 9.73 0.00 38.34 3.28
129 130 0.109179 GCGCTCACATGCAATTTGGA 60.109 50.000 0.00 0.00 0.00 3.53
130 131 1.904144 CGCTCACATGCAATTTGGAG 58.096 50.000 0.00 0.00 0.00 3.86
131 132 1.636988 GCTCACATGCAATTTGGAGC 58.363 50.000 11.60 11.60 0.00 4.70
132 133 1.738030 GCTCACATGCAATTTGGAGCC 60.738 52.381 14.51 0.00 0.00 4.70
133 134 0.896923 TCACATGCAATTTGGAGCCC 59.103 50.000 0.00 0.00 0.00 5.19
134 135 0.108041 CACATGCAATTTGGAGCCCC 60.108 55.000 0.00 0.00 0.00 5.80
135 136 1.266867 ACATGCAATTTGGAGCCCCC 61.267 55.000 0.00 0.00 0.00 5.40
165 166 4.808077 CAATTGTGCTGCCTATGTCTAG 57.192 45.455 0.00 0.00 0.00 2.43
179 180 3.146847 ATGTCTAGTACATCGATGCCGA 58.853 45.455 25.11 11.20 46.15 5.54
181 182 6.387972 ATGTCTAGTACATCGATGCCGAGC 62.388 50.000 25.11 15.55 46.15 5.03
197 198 2.190578 GCTGTGGGCTTATCCGCT 59.809 61.111 0.00 0.00 38.11 5.52
198 199 2.182842 GCTGTGGGCTTATCCGCTG 61.183 63.158 0.00 0.00 38.11 5.18
199 200 1.522092 CTGTGGGCTTATCCGCTGA 59.478 57.895 0.00 0.00 38.14 4.26
200 201 0.107456 CTGTGGGCTTATCCGCTGAT 59.893 55.000 0.00 0.00 38.14 2.90
201 202 0.179048 TGTGGGCTTATCCGCTGATG 60.179 55.000 0.20 0.00 38.11 3.07
202 203 0.886490 GTGGGCTTATCCGCTGATGG 60.886 60.000 0.20 0.00 34.64 3.51
205 206 0.607489 GGCTTATCCGCTGATGGCAT 60.607 55.000 0.00 0.00 41.91 4.40
207 208 2.426522 GCTTATCCGCTGATGGCATTA 58.573 47.619 0.00 0.00 41.91 1.90
208 209 2.160417 GCTTATCCGCTGATGGCATTAC 59.840 50.000 0.00 0.00 41.91 1.89
210 211 2.175878 ATCCGCTGATGGCATTACTC 57.824 50.000 0.00 0.00 41.91 2.59
212 213 0.886490 CCGCTGATGGCATTACTCCC 60.886 60.000 0.00 0.00 41.91 4.30
213 214 0.107456 CGCTGATGGCATTACTCCCT 59.893 55.000 0.00 0.00 41.91 4.20
226 228 4.755266 TTACTCCCTCCTTGTCTTATGC 57.245 45.455 0.00 0.00 0.00 3.14
252 254 8.155747 AGAGAAGCTCAAGTCGATAGTGATCG 62.156 46.154 0.91 0.91 43.46 3.69
264 266 2.457366 AGTGATCGTCGCTTTCCTTT 57.543 45.000 0.00 0.00 32.48 3.11
269 271 0.320421 TCGTCGCTTTCCTTTGGGAG 60.320 55.000 0.00 0.00 43.29 4.30
272 274 2.418197 CGTCGCTTTCCTTTGGGAGATA 60.418 50.000 0.00 0.00 43.29 1.98
275 277 2.880890 CGCTTTCCTTTGGGAGATATGG 59.119 50.000 0.00 0.00 43.29 2.74
280 282 6.406288 GCTTTCCTTTGGGAGATATGGAAAAG 60.406 42.308 0.00 0.00 43.29 2.27
281 283 4.536765 TCCTTTGGGAGATATGGAAAAGC 58.463 43.478 0.00 0.00 36.57 3.51
289 293 4.336713 GGAGATATGGAAAAGCAGGAACAC 59.663 45.833 0.00 0.00 0.00 3.32
290 294 5.184892 AGATATGGAAAAGCAGGAACACT 57.815 39.130 0.00 0.00 0.00 3.55
300 304 1.404315 GCAGGAACACTAGGGTCTTCG 60.404 57.143 0.00 0.00 0.00 3.79
303 307 0.606604 GAACACTAGGGTCTTCGGCA 59.393 55.000 0.00 0.00 0.00 5.69
309 313 1.482593 CTAGGGTCTTCGGCAATGAGT 59.517 52.381 0.00 0.00 0.00 3.41
326 330 0.105039 AGTGCCCATTAGCGAGCTAC 59.895 55.000 4.05 0.00 34.65 3.58
328 332 1.067582 GCCCATTAGCGAGCTACGT 59.932 57.895 4.05 0.00 44.60 3.57
350 354 1.599419 GGTCGCAACATTGTTGTGGAC 60.599 52.381 31.82 29.98 35.83 4.02
363 367 3.100671 GTTGTGGACATCCTCCTCTAGT 58.899 50.000 0.00 0.00 40.26 2.57
370 374 1.833630 CATCCTCCTCTAGTGTTGGCA 59.166 52.381 0.00 0.00 0.00 4.92
372 376 2.551270 TCCTCCTCTAGTGTTGGCATT 58.449 47.619 0.00 0.00 0.00 3.56
418 422 1.682854 TCTTGAAGCTTGGGTGCAAAG 59.317 47.619 2.10 0.00 34.99 2.77
419 423 0.752054 TTGAAGCTTGGGTGCAAAGG 59.248 50.000 2.10 0.00 34.99 3.11
423 427 0.396974 AGCTTGGGTGCAAAGGTTCA 60.397 50.000 0.00 0.00 31.52 3.18
449 453 0.933097 CGCTATAGCTGCCACACAAG 59.067 55.000 21.98 0.00 39.32 3.16
455 459 2.276732 AGCTGCCACACAAGTGTTAT 57.723 45.000 2.55 0.00 44.39 1.89
456 460 3.417069 AGCTGCCACACAAGTGTTATA 57.583 42.857 2.55 0.00 44.39 0.98
457 461 3.750371 AGCTGCCACACAAGTGTTATAA 58.250 40.909 2.55 0.00 44.39 0.98
458 462 4.141287 AGCTGCCACACAAGTGTTATAAA 58.859 39.130 2.55 0.00 44.39 1.40
459 463 4.023193 AGCTGCCACACAAGTGTTATAAAC 60.023 41.667 2.55 0.00 44.39 2.01
463 467 4.557895 GCCACACAAGTGTTATAAACCACC 60.558 45.833 2.55 0.00 44.39 4.61
471 475 4.788617 AGTGTTATAAACCACCTCCTCCAT 59.211 41.667 3.30 0.00 0.00 3.41
487 491 3.367630 CCTCCATTTTTACATGTTTGCGC 59.632 43.478 2.30 0.00 0.00 6.09
489 493 5.378292 TCCATTTTTACATGTTTGCGCTA 57.622 34.783 9.73 0.00 0.00 4.26
493 497 6.804295 CCATTTTTACATGTTTGCGCTACTTA 59.196 34.615 9.73 0.00 0.00 2.24
494 498 7.008266 CCATTTTTACATGTTTGCGCTACTTAG 59.992 37.037 9.73 4.12 0.00 2.18
495 499 4.593597 TTACATGTTTGCGCTACTTAGC 57.406 40.909 9.73 0.00 45.62 3.09
507 511 2.101082 GCTACTTAGCGCTTCTTACCCT 59.899 50.000 18.68 0.00 39.82 4.34
528 532 5.221244 CCCTCGATTTGTTTCAGAACCTTTT 60.221 40.000 0.00 0.00 34.80 2.27
532 536 6.094881 TCGATTTGTTTCAGAACCTTTTGAGT 59.905 34.615 0.00 0.00 34.80 3.41
557 586 5.299531 ACTTTAGAGAGTTTTTCAACCCTGC 59.700 40.000 0.00 0.00 32.70 4.85
561 590 4.134563 GAGAGTTTTTCAACCCTGCTGTA 58.865 43.478 0.00 0.00 32.70 2.74
589 618 3.006323 TGCAACTGAACTTTTGTTGTGGT 59.994 39.130 0.00 0.00 43.66 4.16
698 729 3.134127 GCTGCCGCCTTAACCCAG 61.134 66.667 0.00 0.00 0.00 4.45
699 730 3.134127 CTGCCGCCTTAACCCAGC 61.134 66.667 0.00 0.00 0.00 4.85
704 735 3.890674 GCCTTAACCCAGCGAGTG 58.109 61.111 0.00 0.00 0.00 3.51
742 3191 4.489810 CGAGAGAACTTGTAAGACATGCT 58.510 43.478 0.00 0.00 0.00 3.79
760 3209 5.488561 ACATGCTTAAAATGGGAAGGGAAAT 59.511 36.000 0.00 0.00 0.00 2.17
770 3219 8.448068 AAATGGGAAGGGAAATAAATGAAAGA 57.552 30.769 0.00 0.00 0.00 2.52
771 3220 8.448068 AATGGGAAGGGAAATAAATGAAAGAA 57.552 30.769 0.00 0.00 0.00 2.52
772 3221 7.480760 TGGGAAGGGAAATAAATGAAAGAAG 57.519 36.000 0.00 0.00 0.00 2.85
773 3222 7.016296 TGGGAAGGGAAATAAATGAAAGAAGT 58.984 34.615 0.00 0.00 0.00 3.01
817 3270 3.468770 TCGAAACGGGAAAGAATTGTCA 58.531 40.909 0.00 0.00 0.00 3.58
825 3279 1.841663 AAAGAATTGTCACGCGCGCT 61.842 50.000 32.58 14.89 0.00 5.92
1391 3845 3.739810 GTCCTGGACGACTTGTAAGTTTC 59.260 47.826 11.71 0.00 39.88 2.78
1428 3882 0.589229 CATGCTACTCGACGACCGAC 60.589 60.000 0.00 0.00 43.23 4.79
1603 4087 7.176589 TGACCACAACTAACTTTGGAAAAAT 57.823 32.000 0.00 0.00 33.02 1.82
1626 4110 8.995027 AATATGGCCACAGTAAATAGATCAAA 57.005 30.769 8.16 0.00 0.00 2.69
1707 4191 5.072741 TCATTCAAGTGGAAGAAAGGGAAG 58.927 41.667 0.00 0.00 39.30 3.46
1829 4313 4.041740 ACGTACACTGGCTATGTATGTG 57.958 45.455 19.26 9.70 46.26 3.21
1890 4377 5.894807 CGTCGTCAAACAAAAGTTTAGACTC 59.105 40.000 14.96 10.28 34.21 3.36
1919 4409 4.948621 AGTACAGTACATGACAGGTACCTC 59.051 45.833 23.01 12.81 41.55 3.85
1982 4472 0.110056 CTGCGTGATTGTTGCCTGAC 60.110 55.000 0.00 0.00 0.00 3.51
1983 4473 1.154413 GCGTGATTGTTGCCTGACG 60.154 57.895 0.00 0.00 0.00 4.35
1984 4474 1.841663 GCGTGATTGTTGCCTGACGT 61.842 55.000 0.00 0.00 0.00 4.34
1985 4475 1.424403 CGTGATTGTTGCCTGACGTA 58.576 50.000 0.00 0.00 0.00 3.57
1986 4476 1.390123 CGTGATTGTTGCCTGACGTAG 59.610 52.381 0.00 0.00 0.00 3.51
2030 4520 3.057315 CCCAAGTCACATTTTGCTCGATT 60.057 43.478 0.00 0.00 0.00 3.34
2041 4531 0.109781 TGCTCGATTGGCGCTTTTTC 60.110 50.000 7.64 0.00 40.61 2.29
2138 4634 1.223211 CGGATACATGTGGGGTGCA 59.777 57.895 9.11 0.00 0.00 4.57
2323 4819 2.342279 CCACCACGACACGTCCAT 59.658 61.111 0.00 0.00 38.32 3.41
2387 4883 0.749091 ACCACGACGATGACCGGATA 60.749 55.000 9.46 0.00 43.93 2.59
2506 5002 2.624364 GGTACTCCTAGGTAGCTTCTGC 59.376 54.545 9.08 0.00 37.26 4.26
2507 5003 1.783071 ACTCCTAGGTAGCTTCTGCC 58.217 55.000 9.08 0.00 40.80 4.85
2509 5005 2.292587 ACTCCTAGGTAGCTTCTGCCTT 60.293 50.000 9.08 0.00 43.90 4.35
2510 5006 2.364002 CTCCTAGGTAGCTTCTGCCTTC 59.636 54.545 9.08 0.00 43.90 3.46
2511 5007 2.023888 TCCTAGGTAGCTTCTGCCTTCT 60.024 50.000 9.08 0.00 43.90 2.85
2512 5008 2.102252 CCTAGGTAGCTTCTGCCTTCTG 59.898 54.545 8.70 1.39 43.90 3.02
2594 5090 1.404035 TCGATGTGTATGGACGGTGAG 59.596 52.381 0.00 0.00 0.00 3.51
2604 5179 1.972075 TGGACGGTGAGTGGAATACAA 59.028 47.619 0.00 0.00 0.00 2.41
2635 5210 2.159572 CGTCGTTTTAATTCCAGGCAGG 60.160 50.000 0.00 0.00 39.47 4.85
2647 5222 2.092753 TCCAGGCAGGAATGAAGATGTC 60.093 50.000 0.00 0.00 45.65 3.06
2657 5232 4.511826 GGAATGAAGATGTCACCGGTAATC 59.488 45.833 6.87 11.39 39.72 1.75
2660 5235 5.515797 TGAAGATGTCACCGGTAATCTAG 57.484 43.478 20.84 4.30 0.00 2.43
2663 5238 4.533815 AGATGTCACCGGTAATCTAGACA 58.466 43.478 21.24 21.24 39.90 3.41
2718 5293 6.850752 CCCATTATAAGAGGGTGTTTGTTT 57.149 37.500 14.77 0.00 37.81 2.83
2719 5294 6.863275 CCCATTATAAGAGGGTGTTTGTTTC 58.137 40.000 14.77 0.00 37.81 2.78
2720 5295 6.127451 CCCATTATAAGAGGGTGTTTGTTTCC 60.127 42.308 14.77 0.00 37.81 3.13
2721 5296 6.435904 CCATTATAAGAGGGTGTTTGTTTCCA 59.564 38.462 0.00 0.00 0.00 3.53
2722 5297 7.362920 CCATTATAAGAGGGTGTTTGTTTCCAG 60.363 40.741 0.00 0.00 0.00 3.86
2723 5298 3.662759 AAGAGGGTGTTTGTTTCCAGA 57.337 42.857 0.00 0.00 0.00 3.86
2724 5299 3.214696 AGAGGGTGTTTGTTTCCAGAG 57.785 47.619 0.00 0.00 0.00 3.35
2725 5300 2.777692 AGAGGGTGTTTGTTTCCAGAGA 59.222 45.455 0.00 0.00 0.00 3.10
2726 5301 2.879026 GAGGGTGTTTGTTTCCAGAGAC 59.121 50.000 0.00 0.00 0.00 3.36
2727 5302 2.509964 AGGGTGTTTGTTTCCAGAGACT 59.490 45.455 0.00 0.00 0.00 3.24
2728 5303 3.053619 AGGGTGTTTGTTTCCAGAGACTT 60.054 43.478 0.00 0.00 0.00 3.01
2729 5304 4.165372 AGGGTGTTTGTTTCCAGAGACTTA 59.835 41.667 0.00 0.00 0.00 2.24
2730 5305 5.070685 GGGTGTTTGTTTCCAGAGACTTAT 58.929 41.667 0.00 0.00 0.00 1.73
2731 5306 5.535030 GGGTGTTTGTTTCCAGAGACTTATT 59.465 40.000 0.00 0.00 0.00 1.40
2732 5307 6.438763 GGTGTTTGTTTCCAGAGACTTATTG 58.561 40.000 0.00 0.00 0.00 1.90
2733 5308 6.438763 GTGTTTGTTTCCAGAGACTTATTGG 58.561 40.000 0.00 0.00 0.00 3.16
2734 5309 6.039382 GTGTTTGTTTCCAGAGACTTATTGGT 59.961 38.462 2.67 0.00 33.65 3.67
2735 5310 6.605594 TGTTTGTTTCCAGAGACTTATTGGTT 59.394 34.615 2.67 0.00 33.65 3.67
2736 5311 7.123547 TGTTTGTTTCCAGAGACTTATTGGTTT 59.876 33.333 2.67 0.00 33.65 3.27
2737 5312 8.626526 GTTTGTTTCCAGAGACTTATTGGTTTA 58.373 33.333 2.67 0.00 33.65 2.01
2738 5313 7.979444 TGTTTCCAGAGACTTATTGGTTTAG 57.021 36.000 2.67 0.00 33.65 1.85
2739 5314 6.940298 TGTTTCCAGAGACTTATTGGTTTAGG 59.060 38.462 2.67 0.00 33.65 2.69
2740 5315 5.693769 TCCAGAGACTTATTGGTTTAGGG 57.306 43.478 2.67 0.00 33.65 3.53
2741 5316 5.347124 TCCAGAGACTTATTGGTTTAGGGA 58.653 41.667 2.67 0.00 33.65 4.20
2742 5317 5.189145 TCCAGAGACTTATTGGTTTAGGGAC 59.811 44.000 2.67 0.00 33.65 4.46
2743 5318 5.189934 CCAGAGACTTATTGGTTTAGGGACT 59.810 44.000 0.00 0.00 46.37 3.85
2744 5319 6.296489 CCAGAGACTTATTGGTTTAGGGACTT 60.296 42.308 0.00 0.00 41.75 3.01
2745 5320 7.093024 CCAGAGACTTATTGGTTTAGGGACTTA 60.093 40.741 0.00 0.00 41.75 2.24
2746 5321 8.319146 CAGAGACTTATTGGTTTAGGGACTTAA 58.681 37.037 0.00 0.00 41.75 1.85
2747 5322 8.887393 AGAGACTTATTGGTTTAGGGACTTAAA 58.113 33.333 0.00 0.00 41.75 1.52
2748 5323 9.511272 GAGACTTATTGGTTTAGGGACTTAAAA 57.489 33.333 0.00 0.00 41.75 1.52
2749 5324 9.871175 AGACTTATTGGTTTAGGGACTTAAAAA 57.129 29.630 0.00 0.00 41.75 1.94
2785 5360 7.996098 TTTCCATCTAAACTAAACAAGAGGG 57.004 36.000 0.00 0.00 0.00 4.30
2786 5361 6.945636 TCCATCTAAACTAAACAAGAGGGA 57.054 37.500 0.75 0.75 34.49 4.20
2787 5362 6.708285 TCCATCTAAACTAAACAAGAGGGAC 58.292 40.000 0.75 0.00 32.37 4.46
2789 5364 7.017254 TCCATCTAAACTAAACAAGAGGGACTT 59.983 37.037 0.75 0.00 41.55 3.01
2790 5365 8.319146 CCATCTAAACTAAACAAGAGGGACTTA 58.681 37.037 0.00 0.00 41.55 2.24
2791 5366 9.892130 CATCTAAACTAAACAAGAGGGACTTAT 57.108 33.333 0.00 0.00 41.55 1.73
2794 5369 9.819267 CTAAACTAAACAAGAGGGACTTATAGG 57.181 37.037 0.00 0.00 41.55 2.57
2795 5370 6.809976 ACTAAACAAGAGGGACTTATAGGG 57.190 41.667 0.00 0.00 41.55 3.53
2796 5371 6.509386 ACTAAACAAGAGGGACTTATAGGGA 58.491 40.000 0.00 0.00 41.55 4.20
2797 5372 5.695424 AAACAAGAGGGACTTATAGGGAC 57.305 43.478 0.00 0.00 41.55 4.46
2798 5373 4.628661 ACAAGAGGGACTTATAGGGACT 57.371 45.455 0.00 0.00 41.55 3.85
2799 5374 4.961585 ACAAGAGGGACTTATAGGGACTT 58.038 43.478 0.00 0.00 41.55 3.01
2800 5375 6.101274 ACAAGAGGGACTTATAGGGACTTA 57.899 41.667 0.00 0.00 41.55 2.24
2801 5376 6.509386 ACAAGAGGGACTTATAGGGACTTAA 58.491 40.000 0.00 0.00 41.55 1.85
2802 5377 6.964086 ACAAGAGGGACTTATAGGGACTTAAA 59.036 38.462 0.00 0.00 41.55 1.52
2803 5378 7.125963 ACAAGAGGGACTTATAGGGACTTAAAG 59.874 40.741 0.00 0.00 41.55 1.85
2804 5379 6.754178 AGAGGGACTTATAGGGACTTAAAGT 58.246 40.000 0.00 0.00 42.31 2.66
2805 5380 6.612049 AGAGGGACTTATAGGGACTTAAAGTG 59.388 42.308 0.00 0.00 40.60 3.16
2806 5381 5.666265 AGGGACTTATAGGGACTTAAAGTGG 59.334 44.000 0.00 0.00 40.60 4.00
2807 5382 5.163227 GGGACTTATAGGGACTTAAAGTGGG 60.163 48.000 0.00 0.00 40.60 4.61
2808 5383 5.366460 GACTTATAGGGACTTAAAGTGGGC 58.634 45.833 0.00 0.00 40.60 5.36
2809 5384 4.786454 ACTTATAGGGACTTAAAGTGGGCA 59.214 41.667 0.00 0.00 39.58 5.36
2810 5385 5.432060 ACTTATAGGGACTTAAAGTGGGCAT 59.568 40.000 0.00 0.00 39.58 4.40
2811 5386 4.881157 ATAGGGACTTAAAGTGGGCATT 57.119 40.909 0.00 0.00 41.75 3.56
2812 5387 3.542969 AGGGACTTAAAGTGGGCATTT 57.457 42.857 0.00 0.00 27.25 2.32
2813 5388 3.165071 AGGGACTTAAAGTGGGCATTTG 58.835 45.455 0.00 0.00 27.25 2.32
2814 5389 3.161866 GGGACTTAAAGTGGGCATTTGA 58.838 45.455 0.00 0.00 0.00 2.69
2815 5390 3.193479 GGGACTTAAAGTGGGCATTTGAG 59.807 47.826 0.00 0.00 31.53 3.02
2816 5391 4.079253 GGACTTAAAGTGGGCATTTGAGA 58.921 43.478 7.52 0.00 30.26 3.27
2817 5392 4.082733 GGACTTAAAGTGGGCATTTGAGAC 60.083 45.833 7.52 2.89 30.26 3.36
2818 5393 4.729868 ACTTAAAGTGGGCATTTGAGACT 58.270 39.130 7.52 0.00 30.26 3.24
2819 5394 5.140454 ACTTAAAGTGGGCATTTGAGACTT 58.860 37.500 7.52 0.00 30.26 3.01
2820 5395 6.303839 ACTTAAAGTGGGCATTTGAGACTTA 58.696 36.000 7.52 0.00 30.26 2.24
2821 5396 6.948309 ACTTAAAGTGGGCATTTGAGACTTAT 59.052 34.615 7.52 0.00 30.26 1.73
2822 5397 5.649782 AAAGTGGGCATTTGAGACTTATG 57.350 39.130 0.00 0.00 0.00 1.90
2823 5398 4.574674 AGTGGGCATTTGAGACTTATGA 57.425 40.909 0.00 0.00 0.00 2.15
2824 5399 4.922206 AGTGGGCATTTGAGACTTATGAA 58.078 39.130 0.00 0.00 0.00 2.57
2825 5400 5.324409 AGTGGGCATTTGAGACTTATGAAA 58.676 37.500 0.00 0.00 0.00 2.69
2826 5401 5.954150 AGTGGGCATTTGAGACTTATGAAAT 59.046 36.000 0.00 0.00 0.00 2.17
2827 5402 7.118723 AGTGGGCATTTGAGACTTATGAAATA 58.881 34.615 0.00 0.00 0.00 1.40
2828 5403 7.615365 AGTGGGCATTTGAGACTTATGAAATAA 59.385 33.333 0.00 0.00 36.20 1.40
2843 5418 8.609617 TTATGAAATAAGACTCTCAAGGAGGA 57.390 34.615 0.00 0.00 38.94 3.71
2844 5419 6.935240 TGAAATAAGACTCTCAAGGAGGAA 57.065 37.500 0.00 0.00 45.83 3.36
2845 5420 6.702329 TGAAATAAGACTCTCAAGGAGGAAC 58.298 40.000 0.00 0.00 45.83 3.62
2846 5421 6.498651 TGAAATAAGACTCTCAAGGAGGAACT 59.501 38.462 0.00 0.00 45.83 3.01
2847 5422 6.943899 AATAAGACTCTCAAGGAGGAACTT 57.056 37.500 0.00 0.00 45.83 2.66
2848 5423 8.437274 AAATAAGACTCTCAAGGAGGAACTTA 57.563 34.615 0.00 0.00 45.83 2.24
2849 5424 8.616799 AATAAGACTCTCAAGGAGGAACTTAT 57.383 34.615 0.00 0.00 45.83 1.73
2850 5425 9.716556 AATAAGACTCTCAAGGAGGAACTTATA 57.283 33.333 14.82 0.00 45.83 0.98
2851 5426 7.654022 AAGACTCTCAAGGAGGAACTTATAG 57.346 40.000 0.00 0.00 45.83 1.31
2852 5427 6.133356 AGACTCTCAAGGAGGAACTTATAGG 58.867 44.000 0.00 0.00 45.83 2.57
2853 5428 5.212745 ACTCTCAAGGAGGAACTTATAGGG 58.787 45.833 0.00 0.00 45.83 3.53
2854 5429 5.043281 ACTCTCAAGGAGGAACTTATAGGGA 60.043 44.000 0.00 0.00 45.83 4.20
2855 5430 5.209659 TCTCAAGGAGGAACTTATAGGGAC 58.790 45.833 0.00 0.00 41.55 4.46
2856 5431 5.043281 TCTCAAGGAGGAACTTATAGGGACT 60.043 44.000 0.00 0.00 41.55 3.85
2857 5432 5.600749 TCAAGGAGGAACTTATAGGGACTT 58.399 41.667 0.00 0.00 41.55 3.01
2858 5433 6.748969 TCAAGGAGGAACTTATAGGGACTTA 58.251 40.000 0.00 0.00 41.55 2.24
2859 5434 7.371043 TCAAGGAGGAACTTATAGGGACTTAT 58.629 38.462 0.00 0.00 41.55 1.73
2860 5435 8.517047 TCAAGGAGGAACTTATAGGGACTTATA 58.483 37.037 0.00 0.00 41.55 0.98
2861 5436 8.808092 CAAGGAGGAACTTATAGGGACTTATAG 58.192 40.741 0.00 0.00 41.55 1.31
2862 5437 8.071235 AGGAGGAACTTATAGGGACTTATAGT 57.929 38.462 0.00 0.00 41.55 2.12
2863 5438 8.521301 AGGAGGAACTTATAGGGACTTATAGTT 58.479 37.037 0.00 0.00 41.55 2.24
2864 5439 8.586744 GGAGGAACTTATAGGGACTTATAGTTG 58.413 40.741 0.00 0.00 41.55 3.16
2865 5440 9.145442 GAGGAACTTATAGGGACTTATAGTTGT 57.855 37.037 0.00 0.00 41.55 3.32
2900 5475 9.621629 TTTTTAGTCAATGTTAAGTCTCAGGAA 57.378 29.630 0.00 0.00 0.00 3.36
2901 5476 8.603242 TTTAGTCAATGTTAAGTCTCAGGAAC 57.397 34.615 0.00 0.00 0.00 3.62
2902 5477 5.552178 AGTCAATGTTAAGTCTCAGGAACC 58.448 41.667 0.00 0.00 0.00 3.62
2903 5478 5.071788 AGTCAATGTTAAGTCTCAGGAACCA 59.928 40.000 0.00 0.00 0.00 3.67
2904 5479 5.763204 GTCAATGTTAAGTCTCAGGAACCAA 59.237 40.000 0.00 0.00 0.00 3.67
2905 5480 6.262273 GTCAATGTTAAGTCTCAGGAACCAAA 59.738 38.462 0.00 0.00 0.00 3.28
2906 5481 6.262273 TCAATGTTAAGTCTCAGGAACCAAAC 59.738 38.462 0.00 0.00 0.00 2.93
2907 5482 5.105567 TGTTAAGTCTCAGGAACCAAACA 57.894 39.130 0.00 0.00 0.00 2.83
2908 5483 5.123227 TGTTAAGTCTCAGGAACCAAACAG 58.877 41.667 0.00 0.00 0.00 3.16
2909 5484 2.938956 AGTCTCAGGAACCAAACAGG 57.061 50.000 0.00 0.00 45.67 4.00
2924 5499 6.803154 CCAAACAGGTAGAGACTTTTTAGG 57.197 41.667 0.00 0.00 0.00 2.69
2925 5500 5.705905 CCAAACAGGTAGAGACTTTTTAGGG 59.294 44.000 0.00 0.00 0.00 3.53
2926 5501 6.465321 CCAAACAGGTAGAGACTTTTTAGGGA 60.465 42.308 0.00 0.00 0.00 4.20
2927 5502 5.741962 ACAGGTAGAGACTTTTTAGGGAC 57.258 43.478 0.00 0.00 0.00 4.46
2928 5503 5.404395 ACAGGTAGAGACTTTTTAGGGACT 58.596 41.667 0.00 0.00 46.37 3.85
2929 5504 5.845065 ACAGGTAGAGACTTTTTAGGGACTT 59.155 40.000 0.00 0.00 41.75 3.01
2930 5505 6.166982 CAGGTAGAGACTTTTTAGGGACTTG 58.833 44.000 0.00 0.00 41.75 3.16
2931 5506 6.014499 CAGGTAGAGACTTTTTAGGGACTTGA 60.014 42.308 0.00 0.00 41.75 3.02
2932 5507 6.211785 AGGTAGAGACTTTTTAGGGACTTGAG 59.788 42.308 0.00 0.00 41.75 3.02
2933 5508 6.210984 GGTAGAGACTTTTTAGGGACTTGAGA 59.789 42.308 0.00 0.00 41.75 3.27
2934 5509 6.104146 AGAGACTTTTTAGGGACTTGAGAC 57.896 41.667 0.00 0.00 41.75 3.36
2935 5510 5.841783 AGAGACTTTTTAGGGACTTGAGACT 59.158 40.000 0.00 0.00 41.75 3.24
2936 5511 6.327887 AGAGACTTTTTAGGGACTTGAGACTT 59.672 38.462 0.00 0.00 41.75 3.01
2937 5512 7.509659 AGAGACTTTTTAGGGACTTGAGACTTA 59.490 37.037 0.00 0.00 41.75 2.24
2938 5513 8.208575 AGACTTTTTAGGGACTTGAGACTTAT 57.791 34.615 0.00 0.00 41.75 1.73
2939 5514 9.322769 AGACTTTTTAGGGACTTGAGACTTATA 57.677 33.333 0.00 0.00 41.75 0.98
2940 5515 9.939802 GACTTTTTAGGGACTTGAGACTTATAA 57.060 33.333 0.00 0.00 41.75 0.98
2941 5516 9.945904 ACTTTTTAGGGACTTGAGACTTATAAG 57.054 33.333 11.05 11.05 41.75 1.73
2942 5517 9.945904 CTTTTTAGGGACTTGAGACTTATAAGT 57.054 33.333 18.05 18.05 40.66 2.24
2944 5519 9.720769 TTTTAGGGACTTGAGACTTATAAGTTG 57.279 33.333 18.96 9.81 38.78 3.16
2945 5520 6.301169 AGGGACTTGAGACTTATAAGTTGG 57.699 41.667 18.96 10.07 34.84 3.77
2946 5521 5.189934 AGGGACTTGAGACTTATAAGTTGGG 59.810 44.000 18.96 10.37 34.84 4.12
2947 5522 5.189145 GGGACTTGAGACTTATAAGTTGGGA 59.811 44.000 18.96 6.15 39.88 4.37
2948 5523 6.107343 GGACTTGAGACTTATAAGTTGGGAC 58.893 44.000 18.96 6.39 39.88 4.46
2949 5524 6.295688 GGACTTGAGACTTATAAGTTGGGACA 60.296 42.308 18.96 11.68 39.88 4.02
2983 5558 8.865590 TTTAAAACTTATGAACCAAACAGAGC 57.134 30.769 0.00 0.00 0.00 4.09
2984 5559 5.453567 AAACTTATGAACCAAACAGAGCC 57.546 39.130 0.00 0.00 0.00 4.70
2985 5560 4.373156 ACTTATGAACCAAACAGAGCCT 57.627 40.909 0.00 0.00 0.00 4.58
2986 5561 5.499004 ACTTATGAACCAAACAGAGCCTA 57.501 39.130 0.00 0.00 0.00 3.93
2987 5562 5.876357 ACTTATGAACCAAACAGAGCCTAA 58.124 37.500 0.00 0.00 0.00 2.69
2988 5563 5.940470 ACTTATGAACCAAACAGAGCCTAAG 59.060 40.000 0.00 0.00 0.00 2.18
2989 5564 2.504367 TGAACCAAACAGAGCCTAAGC 58.496 47.619 0.00 0.00 40.32 3.09
2990 5565 2.158682 TGAACCAAACAGAGCCTAAGCA 60.159 45.455 0.00 0.00 43.56 3.91
2991 5566 2.191128 ACCAAACAGAGCCTAAGCAG 57.809 50.000 0.00 0.00 43.56 4.24
2992 5567 1.271597 ACCAAACAGAGCCTAAGCAGG 60.272 52.381 0.00 0.00 45.77 4.85
2993 5568 1.457346 CAAACAGAGCCTAAGCAGGG 58.543 55.000 0.00 0.00 42.88 4.45
3014 5589 5.104485 AGGGCGTAAGATTGGAGTTAAATCT 60.104 40.000 2.56 0.00 44.40 2.40
3016 5591 5.502606 GCGTAAGATTGGAGTTAAATCTGC 58.497 41.667 2.56 0.00 42.26 4.26
3130 5705 5.644206 TGTATGTGTGTTTGTGTTAGTGTGT 59.356 36.000 0.00 0.00 0.00 3.72
3131 5706 4.411993 TGTGTGTTTGTGTTAGTGTGTG 57.588 40.909 0.00 0.00 0.00 3.82
3132 5707 4.065789 TGTGTGTTTGTGTTAGTGTGTGA 58.934 39.130 0.00 0.00 0.00 3.58
3133 5708 4.083749 TGTGTGTTTGTGTTAGTGTGTGAC 60.084 41.667 0.00 0.00 0.00 3.67
3286 5861 6.545666 TGTGTATTAAATGGACTTATGGCTGG 59.454 38.462 0.00 0.00 0.00 4.85
3384 5959 9.506018 AAGTAAGCCTCATAAAATTTTGCAAAT 57.494 25.926 13.65 0.00 0.00 2.32
3418 5993 6.509997 GCAATTTTGAACAGGCAACAACTTAG 60.510 38.462 0.00 0.00 41.41 2.18
3483 6058 7.659159 ACGCATTTTTCGTATTTAAATTTCCG 58.341 30.769 5.91 7.07 38.52 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.128117 GCCAATGCAACATTCAAAGAATGATT 60.128 34.615 22.42 11.06 36.11 2.57
1 2 5.353123 GCCAATGCAACATTCAAAGAATGAT 59.647 36.000 22.42 10.89 36.11 2.45
2 3 4.691685 GCCAATGCAACATTCAAAGAATGA 59.308 37.500 22.42 4.46 37.47 2.57
3 4 4.142773 GGCCAATGCAACATTCAAAGAATG 60.143 41.667 15.95 15.95 40.13 2.67
4 5 4.004982 GGCCAATGCAACATTCAAAGAAT 58.995 39.130 0.00 0.00 40.13 2.40
5 6 3.181457 TGGCCAATGCAACATTCAAAGAA 60.181 39.130 0.61 0.00 40.13 2.52
6 7 2.367894 TGGCCAATGCAACATTCAAAGA 59.632 40.909 0.61 0.00 40.13 2.52
7 8 2.481185 GTGGCCAATGCAACATTCAAAG 59.519 45.455 7.24 0.00 41.41 2.77
8 9 2.492012 GTGGCCAATGCAACATTCAAA 58.508 42.857 7.24 0.00 41.41 2.69
9 10 1.270732 GGTGGCCAATGCAACATTCAA 60.271 47.619 7.24 0.00 43.75 2.69
10 11 0.321021 GGTGGCCAATGCAACATTCA 59.679 50.000 7.24 0.00 43.75 2.57
11 12 0.609662 AGGTGGCCAATGCAACATTC 59.390 50.000 7.24 0.00 43.75 2.67
12 13 0.609662 GAGGTGGCCAATGCAACATT 59.390 50.000 7.24 0.00 43.75 2.71
13 14 1.259840 GGAGGTGGCCAATGCAACAT 61.260 55.000 7.24 0.00 43.75 2.71
14 15 1.907807 GGAGGTGGCCAATGCAACA 60.908 57.895 7.24 0.00 43.75 3.33
15 16 1.907807 TGGAGGTGGCCAATGCAAC 60.908 57.895 7.24 0.00 41.01 4.17
16 17 1.907807 GTGGAGGTGGCCAATGCAA 60.908 57.895 7.24 0.00 40.20 4.08
17 18 1.496444 TAGTGGAGGTGGCCAATGCA 61.496 55.000 7.24 8.41 40.20 3.96
18 19 1.032114 GTAGTGGAGGTGGCCAATGC 61.032 60.000 7.24 5.18 40.20 3.56
19 20 0.394352 GGTAGTGGAGGTGGCCAATG 60.394 60.000 7.24 0.00 40.20 2.82
20 21 0.844661 TGGTAGTGGAGGTGGCCAAT 60.845 55.000 7.24 0.00 40.20 3.16
21 22 1.063070 TTGGTAGTGGAGGTGGCCAA 61.063 55.000 7.24 0.00 40.20 4.52
22 23 1.063070 TTTGGTAGTGGAGGTGGCCA 61.063 55.000 0.00 0.00 35.02 5.36
23 24 0.111639 TTTTGGTAGTGGAGGTGGCC 59.888 55.000 0.00 0.00 0.00 5.36
24 25 1.244816 GTTTTGGTAGTGGAGGTGGC 58.755 55.000 0.00 0.00 0.00 5.01
25 26 2.649531 TGTTTTGGTAGTGGAGGTGG 57.350 50.000 0.00 0.00 0.00 4.61
26 27 6.834168 AAATATGTTTTGGTAGTGGAGGTG 57.166 37.500 0.00 0.00 0.00 4.00
27 28 7.007723 TGAAAATATGTTTTGGTAGTGGAGGT 58.992 34.615 4.76 0.00 37.65 3.85
28 29 7.461182 TGAAAATATGTTTTGGTAGTGGAGG 57.539 36.000 4.76 0.00 37.65 4.30
29 30 8.739039 TGATGAAAATATGTTTTGGTAGTGGAG 58.261 33.333 4.76 0.00 37.65 3.86
30 31 8.519526 GTGATGAAAATATGTTTTGGTAGTGGA 58.480 33.333 4.76 0.00 37.65 4.02
31 32 8.303156 TGTGATGAAAATATGTTTTGGTAGTGG 58.697 33.333 4.76 0.00 37.65 4.00
32 33 9.345517 CTGTGATGAAAATATGTTTTGGTAGTG 57.654 33.333 4.76 0.00 37.65 2.74
33 34 9.077885 ACTGTGATGAAAATATGTTTTGGTAGT 57.922 29.630 4.76 0.00 37.65 2.73
34 35 9.559958 GACTGTGATGAAAATATGTTTTGGTAG 57.440 33.333 4.76 0.00 37.65 3.18
35 36 8.233868 CGACTGTGATGAAAATATGTTTTGGTA 58.766 33.333 4.76 0.00 37.65 3.25
36 37 7.083858 CGACTGTGATGAAAATATGTTTTGGT 58.916 34.615 4.76 0.00 37.65 3.67
37 38 7.083858 ACGACTGTGATGAAAATATGTTTTGG 58.916 34.615 4.76 0.00 37.65 3.28
56 57 1.787155 GCACAGTAGAACACACGACTG 59.213 52.381 0.00 0.00 44.69 3.51
57 58 1.269621 GGCACAGTAGAACACACGACT 60.270 52.381 0.00 0.00 0.00 4.18
58 59 1.137513 GGCACAGTAGAACACACGAC 58.862 55.000 0.00 0.00 0.00 4.34
59 60 0.318360 CGGCACAGTAGAACACACGA 60.318 55.000 0.00 0.00 0.00 4.35
60 61 0.318360 TCGGCACAGTAGAACACACG 60.318 55.000 0.00 0.00 0.00 4.49
61 62 1.726791 CATCGGCACAGTAGAACACAC 59.273 52.381 0.00 0.00 0.00 3.82
62 63 1.616374 TCATCGGCACAGTAGAACACA 59.384 47.619 0.00 0.00 0.00 3.72
63 64 2.094700 TCTCATCGGCACAGTAGAACAC 60.095 50.000 0.00 0.00 0.00 3.32
64 65 2.094700 GTCTCATCGGCACAGTAGAACA 60.095 50.000 0.00 0.00 0.00 3.18
65 66 2.164624 AGTCTCATCGGCACAGTAGAAC 59.835 50.000 0.00 0.00 0.00 3.01
66 67 2.164422 CAGTCTCATCGGCACAGTAGAA 59.836 50.000 0.00 0.00 0.00 2.10
67 68 1.745653 CAGTCTCATCGGCACAGTAGA 59.254 52.381 0.00 0.00 0.00 2.59
68 69 1.474478 ACAGTCTCATCGGCACAGTAG 59.526 52.381 0.00 0.00 0.00 2.57
69 70 1.545841 ACAGTCTCATCGGCACAGTA 58.454 50.000 0.00 0.00 0.00 2.74
70 71 0.681733 AACAGTCTCATCGGCACAGT 59.318 50.000 0.00 0.00 0.00 3.55
71 72 1.073964 CAACAGTCTCATCGGCACAG 58.926 55.000 0.00 0.00 0.00 3.66
72 73 0.678950 TCAACAGTCTCATCGGCACA 59.321 50.000 0.00 0.00 0.00 4.57
73 74 1.071605 GTCAACAGTCTCATCGGCAC 58.928 55.000 0.00 0.00 0.00 5.01
74 75 0.678950 TGTCAACAGTCTCATCGGCA 59.321 50.000 0.00 0.00 0.00 5.69
75 76 1.071605 GTGTCAACAGTCTCATCGGC 58.928 55.000 0.00 0.00 0.00 5.54
76 77 2.438868 TGTGTCAACAGTCTCATCGG 57.561 50.000 0.00 0.00 0.00 4.18
77 78 3.842820 AGATGTGTCAACAGTCTCATCG 58.157 45.455 6.07 0.00 40.39 3.84
78 79 4.629200 GGAAGATGTGTCAACAGTCTCATC 59.371 45.833 4.24 4.24 40.39 2.92
79 80 4.285517 AGGAAGATGTGTCAACAGTCTCAT 59.714 41.667 0.12 0.00 40.39 2.90
80 81 3.643320 AGGAAGATGTGTCAACAGTCTCA 59.357 43.478 0.12 0.00 40.39 3.27
81 82 4.241681 GAGGAAGATGTGTCAACAGTCTC 58.758 47.826 0.12 0.00 40.39 3.36
82 83 3.305676 CGAGGAAGATGTGTCAACAGTCT 60.306 47.826 0.00 0.00 40.39 3.24
83 84 2.989840 CGAGGAAGATGTGTCAACAGTC 59.010 50.000 0.00 0.00 40.39 3.51
84 85 2.628178 TCGAGGAAGATGTGTCAACAGT 59.372 45.455 0.00 0.00 40.39 3.55
85 86 2.989840 GTCGAGGAAGATGTGTCAACAG 59.010 50.000 0.00 0.00 40.39 3.16
86 87 2.288825 GGTCGAGGAAGATGTGTCAACA 60.289 50.000 0.00 0.00 41.58 3.33
87 88 2.338500 GGTCGAGGAAGATGTGTCAAC 58.662 52.381 0.00 0.00 0.00 3.18
88 89 1.067846 CGGTCGAGGAAGATGTGTCAA 60.068 52.381 0.00 0.00 0.00 3.18
89 90 0.526211 CGGTCGAGGAAGATGTGTCA 59.474 55.000 0.00 0.00 0.00 3.58
90 91 0.526662 ACGGTCGAGGAAGATGTGTC 59.473 55.000 0.00 0.00 0.00 3.67
91 92 0.243907 CACGGTCGAGGAAGATGTGT 59.756 55.000 0.00 0.00 0.00 3.72
92 93 1.078759 GCACGGTCGAGGAAGATGTG 61.079 60.000 0.00 0.00 34.57 3.21
93 94 1.215647 GCACGGTCGAGGAAGATGT 59.784 57.895 0.00 0.00 0.00 3.06
94 95 1.874019 CGCACGGTCGAGGAAGATG 60.874 63.158 0.00 0.00 0.00 2.90
95 96 2.490217 CGCACGGTCGAGGAAGAT 59.510 61.111 0.00 0.00 0.00 2.40
96 97 4.415332 GCGCACGGTCGAGGAAGA 62.415 66.667 0.30 0.00 0.00 2.87
97 98 4.421479 AGCGCACGGTCGAGGAAG 62.421 66.667 11.47 0.00 0.00 3.46
98 99 4.415332 GAGCGCACGGTCGAGGAA 62.415 66.667 11.47 0.00 32.85 3.36
108 109 0.711670 CAAATTGCATGTGAGCGCAC 59.288 50.000 14.25 14.25 45.35 5.34
109 110 0.388778 CCAAATTGCATGTGAGCGCA 60.389 50.000 11.47 0.00 37.31 6.09
110 111 0.109179 TCCAAATTGCATGTGAGCGC 60.109 50.000 0.00 0.00 37.31 5.92
111 112 1.904144 CTCCAAATTGCATGTGAGCG 58.096 50.000 0.00 0.00 37.31 5.03
112 113 1.636988 GCTCCAAATTGCATGTGAGC 58.363 50.000 11.13 11.13 35.50 4.26
113 114 1.134907 GGGCTCCAAATTGCATGTGAG 60.135 52.381 0.00 0.00 0.00 3.51
114 115 0.896923 GGGCTCCAAATTGCATGTGA 59.103 50.000 0.00 0.00 0.00 3.58
115 116 0.108041 GGGGCTCCAAATTGCATGTG 60.108 55.000 0.00 0.00 0.00 3.21
116 117 1.266867 GGGGGCTCCAAATTGCATGT 61.267 55.000 4.16 0.00 35.00 3.21
117 118 1.523524 GGGGGCTCCAAATTGCATG 59.476 57.895 4.16 0.00 35.00 4.06
118 119 4.055178 GGGGGCTCCAAATTGCAT 57.945 55.556 4.16 0.00 35.00 3.96
134 135 4.781959 CACAATTGCGCGCCAGGG 62.782 66.667 30.77 18.08 0.00 4.45
143 144 5.456621 ACTAGACATAGGCAGCACAATTGC 61.457 45.833 5.05 0.00 40.17 3.56
165 166 0.249073 ACAGCTCGGCATCGATGTAC 60.249 55.000 25.47 17.55 45.04 2.90
181 182 0.107456 ATCAGCGGATAAGCCCACAG 59.893 55.000 0.00 0.00 38.01 3.66
195 196 1.544314 GGAGGGAGTAATGCCATCAGC 60.544 57.143 2.82 0.00 37.93 4.26
196 197 2.053244 AGGAGGGAGTAATGCCATCAG 58.947 52.381 2.82 0.00 37.93 2.90
197 198 2.173356 CAAGGAGGGAGTAATGCCATCA 59.827 50.000 2.82 0.00 37.93 3.07
198 199 2.173569 ACAAGGAGGGAGTAATGCCATC 59.826 50.000 2.82 0.00 35.57 3.51
199 200 2.173569 GACAAGGAGGGAGTAATGCCAT 59.826 50.000 2.82 0.00 0.00 4.40
200 201 1.559682 GACAAGGAGGGAGTAATGCCA 59.440 52.381 2.82 0.00 0.00 4.92
201 202 1.840635 AGACAAGGAGGGAGTAATGCC 59.159 52.381 0.00 0.00 0.00 4.40
202 203 3.636153 AAGACAAGGAGGGAGTAATGC 57.364 47.619 0.00 0.00 0.00 3.56
205 206 4.101114 TGCATAAGACAAGGAGGGAGTAA 58.899 43.478 0.00 0.00 0.00 2.24
207 208 2.503356 CTGCATAAGACAAGGAGGGAGT 59.497 50.000 0.00 0.00 0.00 3.85
208 209 2.768527 TCTGCATAAGACAAGGAGGGAG 59.231 50.000 0.00 0.00 0.00 4.30
210 211 2.768527 TCTCTGCATAAGACAAGGAGGG 59.231 50.000 0.00 0.00 0.00 4.30
212 213 3.870419 GCTTCTCTGCATAAGACAAGGAG 59.130 47.826 7.55 0.00 32.95 3.69
213 214 3.517100 AGCTTCTCTGCATAAGACAAGGA 59.483 43.478 7.55 0.00 32.95 3.36
226 228 4.095632 TCACTATCGACTTGAGCTTCTCTG 59.904 45.833 0.00 0.00 0.00 3.35
252 254 2.115343 ATCTCCCAAAGGAAAGCGAC 57.885 50.000 0.00 0.00 43.40 5.19
255 257 4.170468 TCCATATCTCCCAAAGGAAAGC 57.830 45.455 0.00 0.00 43.40 3.51
261 263 4.340381 CCTGCTTTTCCATATCTCCCAAAG 59.660 45.833 0.00 0.00 0.00 2.77
264 266 3.122480 TCCTGCTTTTCCATATCTCCCA 58.878 45.455 0.00 0.00 0.00 4.37
269 271 5.529060 CCTAGTGTTCCTGCTTTTCCATATC 59.471 44.000 0.00 0.00 0.00 1.63
272 274 3.562176 CCCTAGTGTTCCTGCTTTTCCAT 60.562 47.826 0.00 0.00 0.00 3.41
275 277 3.075148 GACCCTAGTGTTCCTGCTTTTC 58.925 50.000 0.00 0.00 0.00 2.29
280 282 1.404315 CGAAGACCCTAGTGTTCCTGC 60.404 57.143 0.00 0.00 41.96 4.85
281 283 1.204941 CCGAAGACCCTAGTGTTCCTG 59.795 57.143 0.00 0.00 41.96 3.86
289 293 1.482593 ACTCATTGCCGAAGACCCTAG 59.517 52.381 0.00 0.00 0.00 3.02
290 294 1.207089 CACTCATTGCCGAAGACCCTA 59.793 52.381 0.00 0.00 0.00 3.53
303 307 1.959042 CTCGCTAATGGGCACTCATT 58.041 50.000 0.72 0.72 40.15 2.57
309 313 1.067416 CGTAGCTCGCTAATGGGCA 59.933 57.895 0.00 0.00 0.00 5.36
317 321 3.862402 CGACCGACGTAGCTCGCT 61.862 66.667 0.45 0.00 44.19 4.93
319 323 3.656243 TTGCGACCGACGTAGCTCG 62.656 63.158 8.76 8.76 40.88 5.03
326 330 0.721155 CAACAATGTTGCGACCGACG 60.721 55.000 13.51 0.00 45.66 5.12
328 332 0.306228 CACAACAATGTTGCGACCGA 59.694 50.000 24.32 0.00 37.82 4.69
350 354 1.833630 TGCCAACACTAGAGGAGGATG 59.166 52.381 0.00 0.00 0.00 3.51
370 374 3.189618 TGAAGATCGAGCATGAGCAAT 57.810 42.857 2.38 0.00 45.49 3.56
372 376 2.093816 ACTTGAAGATCGAGCATGAGCA 60.094 45.455 2.38 0.00 45.49 4.26
449 453 4.563140 TGGAGGAGGTGGTTTATAACAC 57.437 45.455 0.00 0.00 36.89 3.32
455 459 5.954757 TGTAAAAATGGAGGAGGTGGTTTA 58.045 37.500 0.00 0.00 0.00 2.01
456 460 4.810345 TGTAAAAATGGAGGAGGTGGTTT 58.190 39.130 0.00 0.00 0.00 3.27
457 461 4.463050 TGTAAAAATGGAGGAGGTGGTT 57.537 40.909 0.00 0.00 0.00 3.67
458 462 4.202673 ACATGTAAAAATGGAGGAGGTGGT 60.203 41.667 0.00 0.00 31.46 4.16
459 463 4.344104 ACATGTAAAAATGGAGGAGGTGG 58.656 43.478 0.00 0.00 31.46 4.61
463 467 4.858692 CGCAAACATGTAAAAATGGAGGAG 59.141 41.667 0.00 0.00 31.46 3.69
471 475 5.854338 GCTAAGTAGCGCAAACATGTAAAAA 59.146 36.000 11.47 0.00 39.82 1.94
487 491 3.548415 CGAGGGTAAGAAGCGCTAAGTAG 60.548 52.174 12.05 0.00 0.00 2.57
489 493 1.134560 CGAGGGTAAGAAGCGCTAAGT 59.865 52.381 12.05 0.00 0.00 2.24
493 497 0.824759 AATCGAGGGTAAGAAGCGCT 59.175 50.000 2.64 2.64 0.00 5.92
494 498 1.327764 CAAATCGAGGGTAAGAAGCGC 59.672 52.381 0.00 0.00 0.00 5.92
495 499 2.618053 ACAAATCGAGGGTAAGAAGCG 58.382 47.619 0.00 0.00 0.00 4.68
497 501 5.932303 TCTGAAACAAATCGAGGGTAAGAAG 59.068 40.000 0.00 0.00 0.00 2.85
499 503 5.477607 TCTGAAACAAATCGAGGGTAAGA 57.522 39.130 0.00 0.00 0.00 2.10
500 504 5.106673 GGTTCTGAAACAAATCGAGGGTAAG 60.107 44.000 0.00 0.00 37.10 2.34
502 506 4.041198 AGGTTCTGAAACAAATCGAGGGTA 59.959 41.667 8.34 0.00 37.10 3.69
503 507 3.146847 GGTTCTGAAACAAATCGAGGGT 58.853 45.455 0.00 0.00 37.10 4.34
504 508 3.412386 AGGTTCTGAAACAAATCGAGGG 58.588 45.455 8.34 0.00 37.10 4.30
507 511 6.094881 ACTCAAAAGGTTCTGAAACAAATCGA 59.905 34.615 8.34 0.00 37.10 3.59
528 532 7.713942 GGGTTGAAAAACTCTCTAAAGTACTCA 59.286 37.037 0.00 0.00 30.93 3.41
532 536 6.485648 GCAGGGTTGAAAAACTCTCTAAAGTA 59.514 38.462 0.00 0.00 30.93 2.24
557 586 3.206150 AGTTCAGTTGCACTGGTTACAG 58.794 45.455 13.87 0.00 45.94 2.74
561 590 3.258123 ACAAAAGTTCAGTTGCACTGGTT 59.742 39.130 13.87 5.54 45.94 3.67
610 639 8.318412 ACACAACATAGATTTACCATGTCACTA 58.682 33.333 0.00 0.00 31.82 2.74
611 640 7.168219 ACACAACATAGATTTACCATGTCACT 58.832 34.615 0.00 0.00 31.82 3.41
647 676 7.253983 CCAAAAGCTCGAAGACCTTTTTAAAAC 60.254 37.037 0.00 0.00 46.49 2.43
652 681 3.699538 ACCAAAAGCTCGAAGACCTTTTT 59.300 39.130 8.94 0.00 46.49 1.94
698 729 4.767255 CTCCCACTGGCCACTCGC 62.767 72.222 0.00 0.00 0.00 5.03
699 730 4.087892 CCTCCCACTGGCCACTCG 62.088 72.222 0.00 0.00 0.00 4.18
700 731 3.721706 CCCTCCCACTGGCCACTC 61.722 72.222 0.00 0.00 0.00 3.51
701 732 4.270153 TCCCTCCCACTGGCCACT 62.270 66.667 0.00 0.00 0.00 4.00
702 733 3.721706 CTCCCTCCCACTGGCCAC 61.722 72.222 0.00 0.00 0.00 5.01
721 3170 7.891183 TTAAGCATGTCTTACAAGTTCTCTC 57.109 36.000 8.52 0.00 37.02 3.20
760 3209 8.857694 ACCGGAGAAAATACTTCTTTCATTTA 57.142 30.769 9.46 0.00 35.62 1.40
768 3217 2.167900 CCCGACCGGAGAAAATACTTCT 59.832 50.000 9.46 0.00 37.50 2.85
770 3219 2.181975 TCCCGACCGGAGAAAATACTT 58.818 47.619 9.46 0.00 34.86 2.24
771 3220 1.856629 TCCCGACCGGAGAAAATACT 58.143 50.000 9.46 0.00 34.86 2.12
772 3221 2.752121 GATCCCGACCGGAGAAAATAC 58.248 52.381 9.46 0.00 46.60 1.89
773 3222 1.338973 CGATCCCGACCGGAGAAAATA 59.661 52.381 9.46 0.00 46.60 1.40
825 3279 0.834687 GGAGCGGATATGGTGGGGTA 60.835 60.000 0.00 0.00 0.00 3.69
1347 3801 3.532155 GAGGCGACGAGGAGGCAT 61.532 66.667 0.00 0.00 35.18 4.40
1391 3845 3.693578 GCATGGAAGGAAGAAGAGAAAGG 59.306 47.826 0.00 0.00 0.00 3.11
1517 3975 3.444388 GGCACTGTCTTAGTAGCTAGTGT 59.556 47.826 11.53 0.00 37.60 3.55
1518 3976 3.487711 CGGCACTGTCTTAGTAGCTAGTG 60.488 52.174 11.53 7.91 37.60 2.74
1603 4087 8.815565 TTTTTGATCTATTTACTGTGGCCATA 57.184 30.769 9.72 4.92 0.00 2.74
1626 4110 1.351017 TCCTTTGCCGTCTCCAGATTT 59.649 47.619 0.00 0.00 0.00 2.17
1707 4191 1.135939 GCAAAATCGTACACGCCCC 59.864 57.895 0.00 0.00 39.60 5.80
1890 4377 6.223852 ACCTGTCATGTACTGTACTTTGAAG 58.776 40.000 17.98 16.57 0.00 3.02
1919 4409 8.664798 TCTGATCAAGACGTTGTTTATTTATGG 58.335 33.333 0.00 0.00 34.98 2.74
1983 4473 4.371855 TCATCCTGATCAACGTCACTAC 57.628 45.455 0.00 0.00 0.00 2.73
1984 4474 5.351458 CATTCATCCTGATCAACGTCACTA 58.649 41.667 0.00 0.00 0.00 2.74
1985 4475 3.961480 TTCATCCTGATCAACGTCACT 57.039 42.857 0.00 0.00 0.00 3.41
1986 4476 3.242543 GCATTCATCCTGATCAACGTCAC 60.243 47.826 0.00 0.00 0.00 3.67
1987 4477 2.938451 GCATTCATCCTGATCAACGTCA 59.062 45.455 0.00 0.00 0.00 4.35
1988 4478 2.289002 GGCATTCATCCTGATCAACGTC 59.711 50.000 0.00 0.00 0.00 4.34
1989 4479 2.292267 GGCATTCATCCTGATCAACGT 58.708 47.619 0.00 0.00 0.00 3.99
2008 4498 1.879380 TCGAGCAAAATGTGACTTGGG 59.121 47.619 0.00 0.00 0.00 4.12
2013 4503 2.253603 GCCAATCGAGCAAAATGTGAC 58.746 47.619 0.00 0.00 0.00 3.67
2030 4520 1.406898 TGAATGTGTGAAAAAGCGCCA 59.593 42.857 2.29 0.00 0.00 5.69
2041 4531 1.266446 TGGAACATGCGTGAATGTGTG 59.734 47.619 14.17 0.00 39.89 3.82
2305 4801 3.876589 ATGGACGTGTCGTGGTGGC 62.877 63.158 0.00 0.00 41.37 5.01
2323 4819 2.735772 GGCTCCTGATCCGGCTTGA 61.736 63.158 0.00 0.00 0.00 3.02
2459 4955 4.702081 GCCTGCGACGACGAGTGT 62.702 66.667 12.29 0.00 42.66 3.55
2594 5090 2.679930 CGGGAGGAGGTTTGTATTCCAC 60.680 54.545 0.00 0.00 33.32 4.02
2604 5179 1.341080 TAAAACGACGGGAGGAGGTT 58.659 50.000 0.00 0.00 0.00 3.50
2635 5210 5.360591 AGATTACCGGTGACATCTTCATTC 58.639 41.667 19.93 0.00 36.32 2.67
2639 5214 5.067413 TGTCTAGATTACCGGTGACATCTTC 59.933 44.000 23.33 16.53 30.78 2.87
2647 5222 9.537192 TTATTTTACATGTCTAGATTACCGGTG 57.463 33.333 19.93 0.00 0.00 4.94
2699 5274 6.843752 TCTGGAAACAAACACCCTCTTATAA 58.156 36.000 0.00 0.00 42.06 0.98
2700 5275 6.271391 TCTCTGGAAACAAACACCCTCTTATA 59.729 38.462 0.00 0.00 42.06 0.98
2701 5276 5.073144 TCTCTGGAAACAAACACCCTCTTAT 59.927 40.000 0.00 0.00 42.06 1.73
2702 5277 4.410883 TCTCTGGAAACAAACACCCTCTTA 59.589 41.667 0.00 0.00 42.06 2.10
2703 5278 3.202151 TCTCTGGAAACAAACACCCTCTT 59.798 43.478 0.00 0.00 42.06 2.85
2704 5279 2.777692 TCTCTGGAAACAAACACCCTCT 59.222 45.455 0.00 0.00 42.06 3.69
2705 5280 2.879026 GTCTCTGGAAACAAACACCCTC 59.121 50.000 0.00 0.00 42.06 4.30
2706 5281 2.509964 AGTCTCTGGAAACAAACACCCT 59.490 45.455 0.00 0.00 42.06 4.34
2707 5282 2.932261 AGTCTCTGGAAACAAACACCC 58.068 47.619 0.00 0.00 42.06 4.61
2708 5283 6.438763 CAATAAGTCTCTGGAAACAAACACC 58.561 40.000 0.00 0.00 42.06 4.16
2709 5284 6.039382 ACCAATAAGTCTCTGGAAACAAACAC 59.961 38.462 3.25 0.00 42.06 3.32
2710 5285 6.126409 ACCAATAAGTCTCTGGAAACAAACA 58.874 36.000 3.25 0.00 42.06 2.83
2711 5286 6.635030 ACCAATAAGTCTCTGGAAACAAAC 57.365 37.500 3.25 0.00 42.06 2.93
2712 5287 7.654022 AAACCAATAAGTCTCTGGAAACAAA 57.346 32.000 3.25 0.00 42.06 2.83
2713 5288 7.447238 CCTAAACCAATAAGTCTCTGGAAACAA 59.553 37.037 3.25 0.00 42.06 2.83
2714 5289 6.940298 CCTAAACCAATAAGTCTCTGGAAACA 59.060 38.462 3.25 0.00 39.59 2.83
2715 5290 6.374613 CCCTAAACCAATAAGTCTCTGGAAAC 59.625 42.308 3.25 0.00 34.16 2.78
2716 5291 6.273730 TCCCTAAACCAATAAGTCTCTGGAAA 59.726 38.462 3.25 0.00 34.16 3.13
2717 5292 5.788533 TCCCTAAACCAATAAGTCTCTGGAA 59.211 40.000 3.25 0.00 34.16 3.53
2718 5293 5.189145 GTCCCTAAACCAATAAGTCTCTGGA 59.811 44.000 3.25 0.00 34.16 3.86
2719 5294 5.189934 AGTCCCTAAACCAATAAGTCTCTGG 59.810 44.000 0.00 0.00 36.24 3.86
2720 5295 6.301169 AGTCCCTAAACCAATAAGTCTCTG 57.699 41.667 0.00 0.00 0.00 3.35
2721 5296 6.954352 AAGTCCCTAAACCAATAAGTCTCT 57.046 37.500 0.00 0.00 0.00 3.10
2722 5297 9.511272 TTTTAAGTCCCTAAACCAATAAGTCTC 57.489 33.333 0.00 0.00 0.00 3.36
2723 5298 9.871175 TTTTTAAGTCCCTAAACCAATAAGTCT 57.129 29.630 0.00 0.00 0.00 3.24
2759 5334 9.025041 CCCTCTTGTTTAGTTTAGATGGAAATT 57.975 33.333 0.00 0.00 0.00 1.82
2760 5335 8.390921 TCCCTCTTGTTTAGTTTAGATGGAAAT 58.609 33.333 0.00 0.00 31.31 2.17
2761 5336 7.664318 GTCCCTCTTGTTTAGTTTAGATGGAAA 59.336 37.037 0.00 0.00 34.58 3.13
2762 5337 7.017254 AGTCCCTCTTGTTTAGTTTAGATGGAA 59.983 37.037 0.00 0.00 34.58 3.53
2763 5338 6.500751 AGTCCCTCTTGTTTAGTTTAGATGGA 59.499 38.462 0.00 0.00 31.63 3.41
2764 5339 6.712276 AGTCCCTCTTGTTTAGTTTAGATGG 58.288 40.000 0.00 0.00 0.00 3.51
2765 5340 9.892130 ATAAGTCCCTCTTGTTTAGTTTAGATG 57.108 33.333 0.00 0.00 37.56 2.90
2768 5343 9.819267 CCTATAAGTCCCTCTTGTTTAGTTTAG 57.181 37.037 0.00 0.00 37.56 1.85
2769 5344 8.765517 CCCTATAAGTCCCTCTTGTTTAGTTTA 58.234 37.037 0.00 0.00 37.56 2.01
2770 5345 7.460082 TCCCTATAAGTCCCTCTTGTTTAGTTT 59.540 37.037 0.00 0.00 37.56 2.66
2771 5346 6.964086 TCCCTATAAGTCCCTCTTGTTTAGTT 59.036 38.462 0.00 0.00 37.56 2.24
2772 5347 6.383436 GTCCCTATAAGTCCCTCTTGTTTAGT 59.617 42.308 0.00 0.00 37.56 2.24
2773 5348 6.612049 AGTCCCTATAAGTCCCTCTTGTTTAG 59.388 42.308 0.00 0.00 37.56 1.85
2774 5349 6.509386 AGTCCCTATAAGTCCCTCTTGTTTA 58.491 40.000 0.00 0.00 37.56 2.01
2775 5350 5.351405 AGTCCCTATAAGTCCCTCTTGTTT 58.649 41.667 0.00 0.00 37.56 2.83
2776 5351 4.961585 AGTCCCTATAAGTCCCTCTTGTT 58.038 43.478 0.00 0.00 37.56 2.83
2777 5352 4.628661 AGTCCCTATAAGTCCCTCTTGT 57.371 45.455 0.00 0.00 37.56 3.16
2778 5353 7.125963 ACTTTAAGTCCCTATAAGTCCCTCTTG 59.874 40.741 0.00 0.00 37.56 3.02
2779 5354 7.125963 CACTTTAAGTCCCTATAAGTCCCTCTT 59.874 40.741 0.00 0.00 39.89 2.85
2780 5355 6.612049 CACTTTAAGTCCCTATAAGTCCCTCT 59.388 42.308 0.00 0.00 0.00 3.69
2781 5356 6.183360 CCACTTTAAGTCCCTATAAGTCCCTC 60.183 46.154 0.00 0.00 0.00 4.30
2782 5357 5.666265 CCACTTTAAGTCCCTATAAGTCCCT 59.334 44.000 0.00 0.00 0.00 4.20
2783 5358 5.163227 CCCACTTTAAGTCCCTATAAGTCCC 60.163 48.000 0.00 0.00 0.00 4.46
2784 5359 5.686913 GCCCACTTTAAGTCCCTATAAGTCC 60.687 48.000 0.00 0.00 0.00 3.85
2785 5360 5.104652 TGCCCACTTTAAGTCCCTATAAGTC 60.105 44.000 0.00 0.00 0.00 3.01
2786 5361 4.786454 TGCCCACTTTAAGTCCCTATAAGT 59.214 41.667 0.00 0.00 0.00 2.24
2787 5362 5.367945 TGCCCACTTTAAGTCCCTATAAG 57.632 43.478 0.00 0.00 0.00 1.73
2788 5363 5.987019 ATGCCCACTTTAAGTCCCTATAA 57.013 39.130 0.00 0.00 0.00 0.98
2789 5364 5.987019 AATGCCCACTTTAAGTCCCTATA 57.013 39.130 0.00 0.00 0.00 1.31
2790 5365 4.881157 AATGCCCACTTTAAGTCCCTAT 57.119 40.909 0.00 0.00 0.00 2.57
2791 5366 4.043561 TCAAATGCCCACTTTAAGTCCCTA 59.956 41.667 0.00 0.00 0.00 3.53
2792 5367 3.165071 CAAATGCCCACTTTAAGTCCCT 58.835 45.455 0.00 0.00 0.00 4.20
2793 5368 3.161866 TCAAATGCCCACTTTAAGTCCC 58.838 45.455 0.00 0.00 0.00 4.46
2794 5369 4.079253 TCTCAAATGCCCACTTTAAGTCC 58.921 43.478 0.00 0.00 0.00 3.85
2795 5370 4.762251 AGTCTCAAATGCCCACTTTAAGTC 59.238 41.667 0.00 0.00 0.00 3.01
2796 5371 4.729868 AGTCTCAAATGCCCACTTTAAGT 58.270 39.130 0.00 0.00 0.00 2.24
2797 5372 5.712152 AAGTCTCAAATGCCCACTTTAAG 57.288 39.130 0.00 0.00 0.00 1.85
2798 5373 6.945435 TCATAAGTCTCAAATGCCCACTTTAA 59.055 34.615 0.00 0.00 0.00 1.52
2799 5374 6.480763 TCATAAGTCTCAAATGCCCACTTTA 58.519 36.000 0.00 0.00 0.00 1.85
2800 5375 5.324409 TCATAAGTCTCAAATGCCCACTTT 58.676 37.500 0.00 0.00 0.00 2.66
2801 5376 4.922206 TCATAAGTCTCAAATGCCCACTT 58.078 39.130 0.00 0.00 0.00 3.16
2802 5377 4.574674 TCATAAGTCTCAAATGCCCACT 57.425 40.909 0.00 0.00 0.00 4.00
2803 5378 5.643379 TTTCATAAGTCTCAAATGCCCAC 57.357 39.130 0.00 0.00 0.00 4.61
2804 5379 7.833682 TCTTATTTCATAAGTCTCAAATGCCCA 59.166 33.333 3.93 0.00 42.21 5.36
2805 5380 8.131731 GTCTTATTTCATAAGTCTCAAATGCCC 58.868 37.037 3.93 0.00 42.21 5.36
2806 5381 8.897752 AGTCTTATTTCATAAGTCTCAAATGCC 58.102 33.333 3.93 0.00 42.21 4.40
2814 5389 9.261035 TCCTTGAGAGTCTTATTTCATAAGTCT 57.739 33.333 0.00 3.77 41.61 3.24
2815 5390 9.528018 CTCCTTGAGAGTCTTATTTCATAAGTC 57.472 37.037 0.00 0.00 37.60 3.01
2816 5391 8.482128 CCTCCTTGAGAGTCTTATTTCATAAGT 58.518 37.037 0.00 0.00 41.47 2.24
2817 5392 8.700051 TCCTCCTTGAGAGTCTTATTTCATAAG 58.300 37.037 0.00 0.00 41.47 1.73
2818 5393 8.609617 TCCTCCTTGAGAGTCTTATTTCATAA 57.390 34.615 0.00 0.00 41.47 1.90
2819 5394 8.478877 GTTCCTCCTTGAGAGTCTTATTTCATA 58.521 37.037 0.00 0.00 41.47 2.15
2820 5395 7.181845 AGTTCCTCCTTGAGAGTCTTATTTCAT 59.818 37.037 0.00 0.00 41.47 2.57
2821 5396 6.498651 AGTTCCTCCTTGAGAGTCTTATTTCA 59.501 38.462 0.00 0.00 41.47 2.69
2822 5397 6.941857 AGTTCCTCCTTGAGAGTCTTATTTC 58.058 40.000 0.00 0.00 41.47 2.17
2823 5398 6.943899 AGTTCCTCCTTGAGAGTCTTATTT 57.056 37.500 0.00 0.00 41.47 1.40
2824 5399 6.943899 AAGTTCCTCCTTGAGAGTCTTATT 57.056 37.500 0.00 0.00 41.47 1.40
2825 5400 9.362151 CTATAAGTTCCTCCTTGAGAGTCTTAT 57.638 37.037 0.00 0.00 41.47 1.73
2826 5401 7.780745 CCTATAAGTTCCTCCTTGAGAGTCTTA 59.219 40.741 0.00 0.00 41.47 2.10
2827 5402 6.609616 CCTATAAGTTCCTCCTTGAGAGTCTT 59.390 42.308 0.00 0.00 41.47 3.01
2828 5403 6.133356 CCTATAAGTTCCTCCTTGAGAGTCT 58.867 44.000 0.00 0.00 41.47 3.24
2829 5404 5.303333 CCCTATAAGTTCCTCCTTGAGAGTC 59.697 48.000 0.00 0.00 41.47 3.36
2830 5405 5.043281 TCCCTATAAGTTCCTCCTTGAGAGT 60.043 44.000 0.00 0.00 41.47 3.24
2831 5406 5.303333 GTCCCTATAAGTTCCTCCTTGAGAG 59.697 48.000 0.00 0.00 42.83 3.20
2832 5407 5.043281 AGTCCCTATAAGTTCCTCCTTGAGA 60.043 44.000 0.00 0.00 0.00 3.27
2833 5408 5.212745 AGTCCCTATAAGTTCCTCCTTGAG 58.787 45.833 0.00 0.00 0.00 3.02
2834 5409 5.222278 AGTCCCTATAAGTTCCTCCTTGA 57.778 43.478 0.00 0.00 0.00 3.02
2835 5410 5.959583 AAGTCCCTATAAGTTCCTCCTTG 57.040 43.478 0.00 0.00 0.00 3.61
2836 5411 8.521301 ACTATAAGTCCCTATAAGTTCCTCCTT 58.479 37.037 0.00 0.00 0.00 3.36
2837 5412 8.071235 ACTATAAGTCCCTATAAGTTCCTCCT 57.929 38.462 0.00 0.00 0.00 3.69
2838 5413 8.586744 CAACTATAAGTCCCTATAAGTTCCTCC 58.413 40.741 0.00 0.00 0.00 4.30
2839 5414 9.145442 ACAACTATAAGTCCCTATAAGTTCCTC 57.855 37.037 0.00 0.00 0.00 3.71
2874 5449 9.621629 TTCCTGAGACTTAACATTGACTAAAAA 57.378 29.630 0.00 0.00 0.00 1.94
2875 5450 9.052759 GTTCCTGAGACTTAACATTGACTAAAA 57.947 33.333 0.00 0.00 0.00 1.52
2876 5451 7.660208 GGTTCCTGAGACTTAACATTGACTAAA 59.340 37.037 0.00 0.00 0.00 1.85
2877 5452 7.159372 GGTTCCTGAGACTTAACATTGACTAA 58.841 38.462 0.00 0.00 0.00 2.24
2878 5453 6.269077 TGGTTCCTGAGACTTAACATTGACTA 59.731 38.462 0.00 0.00 0.00 2.59
2879 5454 5.071788 TGGTTCCTGAGACTTAACATTGACT 59.928 40.000 0.00 0.00 0.00 3.41
2880 5455 5.305585 TGGTTCCTGAGACTTAACATTGAC 58.694 41.667 0.00 0.00 0.00 3.18
2881 5456 5.560722 TGGTTCCTGAGACTTAACATTGA 57.439 39.130 0.00 0.00 0.00 2.57
2882 5457 6.039270 TGTTTGGTTCCTGAGACTTAACATTG 59.961 38.462 0.00 0.00 0.00 2.82
2883 5458 6.126409 TGTTTGGTTCCTGAGACTTAACATT 58.874 36.000 0.00 0.00 0.00 2.71
2884 5459 5.690865 TGTTTGGTTCCTGAGACTTAACAT 58.309 37.500 0.00 0.00 0.00 2.71
2885 5460 5.105567 TGTTTGGTTCCTGAGACTTAACA 57.894 39.130 0.00 0.00 0.00 2.41
2886 5461 4.515567 CCTGTTTGGTTCCTGAGACTTAAC 59.484 45.833 0.00 0.00 0.00 2.01
2887 5462 4.714632 CCTGTTTGGTTCCTGAGACTTAA 58.285 43.478 0.00 0.00 0.00 1.85
2888 5463 4.351874 CCTGTTTGGTTCCTGAGACTTA 57.648 45.455 0.00 0.00 0.00 2.24
2889 5464 3.214696 CCTGTTTGGTTCCTGAGACTT 57.785 47.619 0.00 0.00 0.00 3.01
2890 5465 2.938956 CCTGTTTGGTTCCTGAGACT 57.061 50.000 0.00 0.00 0.00 3.24
2901 5476 5.705905 CCCTAAAAAGTCTCTACCTGTTTGG 59.294 44.000 0.00 0.00 42.93 3.28
2902 5477 6.427242 GTCCCTAAAAAGTCTCTACCTGTTTG 59.573 42.308 0.00 0.00 0.00 2.93
2903 5478 6.329460 AGTCCCTAAAAAGTCTCTACCTGTTT 59.671 38.462 0.00 0.00 0.00 2.83
2904 5479 5.845065 AGTCCCTAAAAAGTCTCTACCTGTT 59.155 40.000 0.00 0.00 0.00 3.16
2905 5480 5.404395 AGTCCCTAAAAAGTCTCTACCTGT 58.596 41.667 0.00 0.00 0.00 4.00
2906 5481 6.014499 TCAAGTCCCTAAAAAGTCTCTACCTG 60.014 42.308 0.00 0.00 0.00 4.00
2907 5482 6.082707 TCAAGTCCCTAAAAAGTCTCTACCT 58.917 40.000 0.00 0.00 0.00 3.08
2908 5483 6.210984 TCTCAAGTCCCTAAAAAGTCTCTACC 59.789 42.308 0.00 0.00 0.00 3.18
2909 5484 7.039574 AGTCTCAAGTCCCTAAAAAGTCTCTAC 60.040 40.741 0.00 0.00 0.00 2.59
2910 5485 7.011382 AGTCTCAAGTCCCTAAAAAGTCTCTA 58.989 38.462 0.00 0.00 0.00 2.43
2911 5486 5.841783 AGTCTCAAGTCCCTAAAAAGTCTCT 59.158 40.000 0.00 0.00 0.00 3.10
2912 5487 6.104146 AGTCTCAAGTCCCTAAAAAGTCTC 57.896 41.667 0.00 0.00 0.00 3.36
2913 5488 6.502074 AAGTCTCAAGTCCCTAAAAAGTCT 57.498 37.500 0.00 0.00 0.00 3.24
2914 5489 9.939802 TTATAAGTCTCAAGTCCCTAAAAAGTC 57.060 33.333 0.00 0.00 0.00 3.01
2915 5490 9.945904 CTTATAAGTCTCAAGTCCCTAAAAAGT 57.054 33.333 4.18 0.00 0.00 2.66
2916 5491 9.945904 ACTTATAAGTCTCAAGTCCCTAAAAAG 57.054 33.333 12.50 0.00 32.86 2.27
2918 5493 9.720769 CAACTTATAAGTCTCAAGTCCCTAAAA 57.279 33.333 18.28 0.00 38.57 1.52
2919 5494 8.319146 CCAACTTATAAGTCTCAAGTCCCTAAA 58.681 37.037 18.28 0.00 38.57 1.85
2920 5495 7.093024 CCCAACTTATAAGTCTCAAGTCCCTAA 60.093 40.741 18.28 0.00 38.57 2.69
2921 5496 6.383147 CCCAACTTATAAGTCTCAAGTCCCTA 59.617 42.308 18.28 0.00 38.57 3.53
2922 5497 5.189934 CCCAACTTATAAGTCTCAAGTCCCT 59.810 44.000 18.28 0.00 38.57 4.20
2923 5498 5.189145 TCCCAACTTATAAGTCTCAAGTCCC 59.811 44.000 18.28 0.00 38.57 4.46
2924 5499 6.107343 GTCCCAACTTATAAGTCTCAAGTCC 58.893 44.000 18.28 0.00 38.57 3.85
2925 5500 6.698380 TGTCCCAACTTATAAGTCTCAAGTC 58.302 40.000 18.28 7.23 38.57 3.01
2926 5501 6.681729 TGTCCCAACTTATAAGTCTCAAGT 57.318 37.500 18.28 0.00 38.57 3.16
2927 5502 7.979444 TTTGTCCCAACTTATAAGTCTCAAG 57.021 36.000 18.28 6.66 38.57 3.02
2928 5503 8.754991 TTTTTGTCCCAACTTATAAGTCTCAA 57.245 30.769 18.28 14.58 38.57 3.02
2957 5532 9.308318 GCTCTGTTTGGTTCATAAGTTTTAAAA 57.692 29.630 0.00 0.00 0.00 1.52
2958 5533 7.923878 GGCTCTGTTTGGTTCATAAGTTTTAAA 59.076 33.333 0.00 0.00 0.00 1.52
2959 5534 7.286775 AGGCTCTGTTTGGTTCATAAGTTTTAA 59.713 33.333 0.00 0.00 0.00 1.52
2960 5535 6.775629 AGGCTCTGTTTGGTTCATAAGTTTTA 59.224 34.615 0.00 0.00 0.00 1.52
2961 5536 5.598417 AGGCTCTGTTTGGTTCATAAGTTTT 59.402 36.000 0.00 0.00 0.00 2.43
2962 5537 5.140454 AGGCTCTGTTTGGTTCATAAGTTT 58.860 37.500 0.00 0.00 0.00 2.66
2963 5538 4.729868 AGGCTCTGTTTGGTTCATAAGTT 58.270 39.130 0.00 0.00 0.00 2.66
2964 5539 4.373156 AGGCTCTGTTTGGTTCATAAGT 57.627 40.909 0.00 0.00 0.00 2.24
2965 5540 5.163713 GCTTAGGCTCTGTTTGGTTCATAAG 60.164 44.000 0.00 0.00 35.22 1.73
2966 5541 4.700213 GCTTAGGCTCTGTTTGGTTCATAA 59.300 41.667 0.00 0.00 35.22 1.90
2967 5542 4.261801 GCTTAGGCTCTGTTTGGTTCATA 58.738 43.478 0.00 0.00 35.22 2.15
2968 5543 3.084786 GCTTAGGCTCTGTTTGGTTCAT 58.915 45.455 0.00 0.00 35.22 2.57
2969 5544 2.158682 TGCTTAGGCTCTGTTTGGTTCA 60.159 45.455 0.00 0.00 39.59 3.18
2970 5545 2.485814 CTGCTTAGGCTCTGTTTGGTTC 59.514 50.000 0.00 0.00 39.59 3.62
2971 5546 2.508526 CTGCTTAGGCTCTGTTTGGTT 58.491 47.619 0.00 0.00 39.59 3.67
2972 5547 1.271597 CCTGCTTAGGCTCTGTTTGGT 60.272 52.381 0.00 0.00 39.59 3.67
2973 5548 1.457346 CCTGCTTAGGCTCTGTTTGG 58.543 55.000 0.00 0.00 39.59 3.28
2974 5549 1.457346 CCCTGCTTAGGCTCTGTTTG 58.543 55.000 0.00 0.00 39.59 2.93
2975 5550 3.965888 CCCTGCTTAGGCTCTGTTT 57.034 52.632 0.00 0.00 39.59 2.83
2983 5558 2.213499 CAATCTTACGCCCTGCTTAGG 58.787 52.381 0.00 0.00 0.00 2.69
2984 5559 2.158957 TCCAATCTTACGCCCTGCTTAG 60.159 50.000 0.00 0.00 0.00 2.18
2985 5560 1.834896 TCCAATCTTACGCCCTGCTTA 59.165 47.619 0.00 0.00 0.00 3.09
2986 5561 0.618458 TCCAATCTTACGCCCTGCTT 59.382 50.000 0.00 0.00 0.00 3.91
2987 5562 0.179000 CTCCAATCTTACGCCCTGCT 59.821 55.000 0.00 0.00 0.00 4.24
2988 5563 0.107654 ACTCCAATCTTACGCCCTGC 60.108 55.000 0.00 0.00 0.00 4.85
2989 5564 2.403252 AACTCCAATCTTACGCCCTG 57.597 50.000 0.00 0.00 0.00 4.45
2990 5565 4.563140 TTTAACTCCAATCTTACGCCCT 57.437 40.909 0.00 0.00 0.00 5.19
2991 5566 5.007724 CAGATTTAACTCCAATCTTACGCCC 59.992 44.000 0.00 0.00 38.67 6.13
2992 5567 5.504173 GCAGATTTAACTCCAATCTTACGCC 60.504 44.000 0.00 0.00 38.67 5.68
2993 5568 5.502606 GCAGATTTAACTCCAATCTTACGC 58.497 41.667 0.00 0.00 38.67 4.42
2994 5569 5.276868 CGGCAGATTTAACTCCAATCTTACG 60.277 44.000 0.00 0.00 38.67 3.18
2995 5570 5.007724 CCGGCAGATTTAACTCCAATCTTAC 59.992 44.000 0.00 0.00 38.67 2.34
2996 5571 5.123227 CCGGCAGATTTAACTCCAATCTTA 58.877 41.667 0.00 0.00 38.67 2.10
2997 5572 3.947834 CCGGCAGATTTAACTCCAATCTT 59.052 43.478 0.00 0.00 38.67 2.40
2998 5573 3.054361 ACCGGCAGATTTAACTCCAATCT 60.054 43.478 0.00 0.00 40.92 2.40
3103 5678 7.539022 CACACTAACACAAACACACATACAAAA 59.461 33.333 0.00 0.00 0.00 2.44
3130 5705 2.543848 GCGAACTGAACTGAATGTGTCA 59.456 45.455 0.00 0.00 34.17 3.58
3131 5706 2.096218 GGCGAACTGAACTGAATGTGTC 60.096 50.000 0.00 0.00 0.00 3.67
3132 5707 1.873591 GGCGAACTGAACTGAATGTGT 59.126 47.619 0.00 0.00 0.00 3.72
3133 5708 1.197721 GGGCGAACTGAACTGAATGTG 59.802 52.381 0.00 0.00 0.00 3.21
3137 5712 0.534203 GGTGGGCGAACTGAACTGAA 60.534 55.000 0.00 0.00 0.00 3.02
3342 5917 9.507329 GAGGCTTACTTGGATTATTCATATTCA 57.493 33.333 0.00 0.00 0.00 2.57
3384 5959 6.765036 TGCCTGTTCAAAATTGCTTCAAATTA 59.235 30.769 0.00 0.00 0.00 1.40
3385 5960 5.589452 TGCCTGTTCAAAATTGCTTCAAATT 59.411 32.000 0.00 0.00 0.00 1.82
3386 5961 5.124645 TGCCTGTTCAAAATTGCTTCAAAT 58.875 33.333 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.