Multiple sequence alignment - TraesCS2A01G478900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G478900 chr2A 100.000 3747 0 0 1 3747 717251840 717255586 0.000000e+00 6920.0
1 TraesCS2A01G478900 chr2A 89.296 1420 117 18 1150 2535 717200341 717201759 0.000000e+00 1748.0
2 TraesCS2A01G478900 chr2A 93.534 928 43 7 2836 3747 497980404 497981330 0.000000e+00 1365.0
3 TraesCS2A01G478900 chr2A 97.628 759 18 0 2989 3747 740090532 740089774 0.000000e+00 1303.0
4 TraesCS2A01G478900 chr2A 92.043 930 53 9 2836 3747 749880079 749881005 0.000000e+00 1288.0
5 TraesCS2A01G478900 chr2A 77.381 1428 219 66 1146 2500 83857328 83855932 0.000000e+00 752.0
6 TraesCS2A01G478900 chr2A 77.858 1242 193 50 1143 2322 85291746 85292967 0.000000e+00 695.0
7 TraesCS2A01G478900 chr2A 77.258 1218 197 51 1169 2322 85589899 85591100 3.160000e-180 641.0
8 TraesCS2A01G478900 chr2A 75.853 1143 185 52 1133 2225 83849043 83847942 7.230000e-137 497.0
9 TraesCS2A01G478900 chr2A 94.161 137 8 0 2573 2709 696927363 696927499 3.790000e-50 209.0
10 TraesCS2A01G478900 chr2A 87.770 139 16 1 329 466 31083691 31083553 1.080000e-35 161.0
11 TraesCS2A01G478900 chr2A 85.211 142 18 3 328 468 649006555 649006694 3.900000e-30 143.0
12 TraesCS2A01G478900 chr2A 84.892 139 19 1 330 466 590545014 590545152 5.050000e-29 139.0
13 TraesCS2A01G478900 chr2D 90.708 2077 110 42 554 2573 579739914 579741964 0.000000e+00 2689.0
14 TraesCS2A01G478900 chr2D 89.720 1430 109 22 1142 2535 579571235 579572662 0.000000e+00 1792.0
15 TraesCS2A01G478900 chr2D 77.047 1429 226 65 1144 2500 83157533 83156135 0.000000e+00 728.0
16 TraesCS2A01G478900 chr2D 77.251 1244 200 54 1143 2322 84742974 84744198 0.000000e+00 652.0
17 TraesCS2A01G478900 chr2D 93.636 110 7 0 2710 2819 579741971 579742080 8.330000e-37 165.0
18 TraesCS2A01G478900 chr2D 86.207 145 16 3 329 470 605457337 605457194 1.800000e-33 154.0
19 TraesCS2A01G478900 chr2D 90.217 92 8 1 466 556 534061391 534061482 6.570000e-23 119.0
20 TraesCS2A01G478900 chr2D 91.667 84 7 0 471 554 106145569 106145486 2.360000e-22 117.0
21 TraesCS2A01G478900 chr2B 92.062 1600 96 12 998 2573 697665329 697666921 0.000000e+00 2222.0
22 TraesCS2A01G478900 chr2B 88.584 1419 129 18 1150 2535 697546707 697548125 0.000000e+00 1692.0
23 TraesCS2A01G478900 chr2B 77.607 1237 207 45 1133 2322 135026390 135025177 0.000000e+00 686.0
24 TraesCS2A01G478900 chr2B 83.663 404 33 16 550 933 697664902 697665292 2.140000e-92 350.0
25 TraesCS2A01G478900 chr2B 80.178 338 37 13 1 328 697664601 697664918 3.770000e-55 226.0
26 TraesCS2A01G478900 chr2B 82.927 82 13 1 47 128 780010805 780010885 5.190000e-09 73.1
27 TraesCS2A01G478900 chr1A 93.427 928 45 7 2836 3747 105280353 105281280 0.000000e+00 1362.0
28 TraesCS2A01G478900 chr1A 97.622 757 18 0 2991 3747 534888894 534888138 0.000000e+00 1299.0
29 TraesCS2A01G478900 chr1A 98.551 138 2 0 2573 2710 335836534 335836397 1.040000e-60 244.0
30 TraesCS2A01G478900 chr1A 94.656 131 6 1 2583 2712 430185793 430185663 6.350000e-48 202.0
31 TraesCS2A01G478900 chr1A 100.000 28 0 0 2949 2976 540208068 540208095 7.000000e-03 52.8
32 TraesCS2A01G478900 chr6A 92.926 933 47 8 2834 3747 600976586 600975654 0.000000e+00 1339.0
33 TraesCS2A01G478900 chr6A 97.647 765 18 0 2983 3747 270292883 270293647 0.000000e+00 1314.0
34 TraesCS2A01G478900 chr6A 97.760 759 17 0 2989 3747 594813752 594812994 0.000000e+00 1308.0
35 TraesCS2A01G478900 chr6A 98.540 137 2 0 2573 2709 330376537 330376673 3.740000e-60 243.0
36 TraesCS2A01G478900 chr6A 86.806 144 17 2 327 468 48707557 48707700 3.870000e-35 159.0
37 TraesCS2A01G478900 chr5A 92.719 934 48 8 2832 3747 697707320 697708251 0.000000e+00 1330.0
38 TraesCS2A01G478900 chr5A 92.497 933 48 10 2834 3747 503477849 503476920 0.000000e+00 1315.0
39 TraesCS2A01G478900 chr5A 87.234 141 15 2 329 466 647359554 647359694 1.390000e-34 158.0
40 TraesCS2A01G478900 chr7A 97.641 763 18 0 2985 3747 722007896 722007134 0.000000e+00 1310.0
41 TraesCS2A01G478900 chr7A 97.810 137 3 0 2573 2709 664429179 664429315 1.740000e-58 237.0
42 TraesCS2A01G478900 chr7A 90.805 87 8 0 469 555 42435058 42434972 2.360000e-22 117.0
43 TraesCS2A01G478900 chr7A 89.362 94 9 1 2836 2929 594887832 594887924 2.360000e-22 117.0
44 TraesCS2A01G478900 chr7A 84.821 112 16 1 2836 2947 627155675 627155565 1.100000e-20 111.0
45 TraesCS2A01G478900 chrUn 97.628 759 18 0 2989 3747 374403185 374403943 0.000000e+00 1303.0
46 TraesCS2A01G478900 chr5B 86.251 931 97 13 2840 3747 91532072 91531150 0.000000e+00 981.0
47 TraesCS2A01G478900 chr5B 92.857 84 6 0 471 554 229081754 229081671 5.080000e-24 122.0
48 TraesCS2A01G478900 chr4B 88.772 570 43 11 2836 3387 399145628 399145062 0.000000e+00 678.0
49 TraesCS2A01G478900 chr4B 85.714 105 15 0 2834 2938 508819461 508819357 1.100000e-20 111.0
50 TraesCS2A01G478900 chr7B 97.810 137 3 0 2573 2709 657528486 657528622 1.740000e-58 237.0
51 TraesCS2A01G478900 chr1B 97.810 137 3 0 2573 2709 563557986 563557850 1.740000e-58 237.0
52 TraesCS2A01G478900 chr1B 92.701 137 10 0 2573 2709 299981538 299981402 8.210000e-47 198.0
53 TraesCS2A01G478900 chr1B 85.906 149 18 2 321 466 167585772 167585920 5.010000e-34 156.0
54 TraesCS2A01G478900 chr1B 79.839 124 22 3 1 122 2554439 2554317 1.850000e-13 87.9
55 TraesCS2A01G478900 chr1B 79.839 124 22 3 1 122 2611172 2611050 1.850000e-13 87.9
56 TraesCS2A01G478900 chr1B 100.000 28 0 0 2951 2978 623400341 623400314 7.000000e-03 52.8
57 TraesCS2A01G478900 chr4A 94.891 137 7 0 2573 2709 541884863 541884999 8.150000e-52 215.0
58 TraesCS2A01G478900 chr4A 89.247 93 10 0 467 559 489062521 489062613 2.360000e-22 117.0
59 TraesCS2A01G478900 chr6D 89.286 140 13 2 329 466 69292944 69292805 1.380000e-39 174.0
60 TraesCS2A01G478900 chr6D 85.333 150 20 1 321 468 353057945 353057796 1.800000e-33 154.0
61 TraesCS2A01G478900 chr4D 87.857 140 15 1 329 466 455634901 455634762 2.990000e-36 163.0
62 TraesCS2A01G478900 chr5D 87.324 142 16 1 329 468 2689105 2689246 1.080000e-35 161.0
63 TraesCS2A01G478900 chr5D 92.857 84 6 0 471 554 479382765 479382682 5.080000e-24 122.0
64 TraesCS2A01G478900 chr7D 86.806 144 17 1 325 466 75346784 75346927 3.870000e-35 159.0
65 TraesCS2A01G478900 chr7D 86.713 143 17 1 329 469 428501753 428501611 1.390000e-34 158.0
66 TraesCS2A01G478900 chr7D 91.954 87 7 0 469 555 42795277 42795191 5.080000e-24 122.0
67 TraesCS2A01G478900 chr7D 92.857 84 6 0 471 554 385518473 385518390 5.080000e-24 122.0
68 TraesCS2A01G478900 chr7D 91.111 90 7 1 466 554 73143572 73143483 1.830000e-23 121.0
69 TraesCS2A01G478900 chr1D 86.395 147 18 1 322 466 318585619 318585765 3.870000e-35 159.0
70 TraesCS2A01G478900 chr1D 86.239 109 14 1 2839 2947 226832195 226832088 2.360000e-22 117.0
71 TraesCS2A01G478900 chr3D 91.860 86 7 0 467 552 612265052 612265137 1.830000e-23 121.0
72 TraesCS2A01G478900 chr3B 82.353 68 12 0 94 161 18741114 18741047 4.040000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G478900 chr2A 717251840 717255586 3746 False 6920.000000 6920 100.000 1 3747 1 chr2A.!!$F8 3746
1 TraesCS2A01G478900 chr2A 717200341 717201759 1418 False 1748.000000 1748 89.296 1150 2535 1 chr2A.!!$F7 1385
2 TraesCS2A01G478900 chr2A 497980404 497981330 926 False 1365.000000 1365 93.534 2836 3747 1 chr2A.!!$F3 911
3 TraesCS2A01G478900 chr2A 740089774 740090532 758 True 1303.000000 1303 97.628 2989 3747 1 chr2A.!!$R4 758
4 TraesCS2A01G478900 chr2A 749880079 749881005 926 False 1288.000000 1288 92.043 2836 3747 1 chr2A.!!$F9 911
5 TraesCS2A01G478900 chr2A 83855932 83857328 1396 True 752.000000 752 77.381 1146 2500 1 chr2A.!!$R3 1354
6 TraesCS2A01G478900 chr2A 85291746 85292967 1221 False 695.000000 695 77.858 1143 2322 1 chr2A.!!$F1 1179
7 TraesCS2A01G478900 chr2A 85589899 85591100 1201 False 641.000000 641 77.258 1169 2322 1 chr2A.!!$F2 1153
8 TraesCS2A01G478900 chr2A 83847942 83849043 1101 True 497.000000 497 75.853 1133 2225 1 chr2A.!!$R2 1092
9 TraesCS2A01G478900 chr2D 579571235 579572662 1427 False 1792.000000 1792 89.720 1142 2535 1 chr2D.!!$F3 1393
10 TraesCS2A01G478900 chr2D 579739914 579742080 2166 False 1427.000000 2689 92.172 554 2819 2 chr2D.!!$F4 2265
11 TraesCS2A01G478900 chr2D 83156135 83157533 1398 True 728.000000 728 77.047 1144 2500 1 chr2D.!!$R1 1356
12 TraesCS2A01G478900 chr2D 84742974 84744198 1224 False 652.000000 652 77.251 1143 2322 1 chr2D.!!$F1 1179
13 TraesCS2A01G478900 chr2B 697546707 697548125 1418 False 1692.000000 1692 88.584 1150 2535 1 chr2B.!!$F1 1385
14 TraesCS2A01G478900 chr2B 697664601 697666921 2320 False 932.666667 2222 85.301 1 2573 3 chr2B.!!$F3 2572
15 TraesCS2A01G478900 chr2B 135025177 135026390 1213 True 686.000000 686 77.607 1133 2322 1 chr2B.!!$R1 1189
16 TraesCS2A01G478900 chr1A 105280353 105281280 927 False 1362.000000 1362 93.427 2836 3747 1 chr1A.!!$F1 911
17 TraesCS2A01G478900 chr1A 534888138 534888894 756 True 1299.000000 1299 97.622 2991 3747 1 chr1A.!!$R3 756
18 TraesCS2A01G478900 chr6A 600975654 600976586 932 True 1339.000000 1339 92.926 2834 3747 1 chr6A.!!$R2 913
19 TraesCS2A01G478900 chr6A 270292883 270293647 764 False 1314.000000 1314 97.647 2983 3747 1 chr6A.!!$F2 764
20 TraesCS2A01G478900 chr6A 594812994 594813752 758 True 1308.000000 1308 97.760 2989 3747 1 chr6A.!!$R1 758
21 TraesCS2A01G478900 chr5A 697707320 697708251 931 False 1330.000000 1330 92.719 2832 3747 1 chr5A.!!$F2 915
22 TraesCS2A01G478900 chr5A 503476920 503477849 929 True 1315.000000 1315 92.497 2834 3747 1 chr5A.!!$R1 913
23 TraesCS2A01G478900 chr7A 722007134 722007896 762 True 1310.000000 1310 97.641 2985 3747 1 chr7A.!!$R3 762
24 TraesCS2A01G478900 chrUn 374403185 374403943 758 False 1303.000000 1303 97.628 2989 3747 1 chrUn.!!$F1 758
25 TraesCS2A01G478900 chr5B 91531150 91532072 922 True 981.000000 981 86.251 2840 3747 1 chr5B.!!$R1 907
26 TraesCS2A01G478900 chr4B 399145062 399145628 566 True 678.000000 678 88.772 2836 3387 1 chr4B.!!$R1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.035725 TACAACCTCTCGCTCCTCGA 60.036 55.0 0.00 0.0 46.29 4.04 F
396 406 0.036765 TCACCCCTATGAACGCACAC 60.037 55.0 0.00 0.0 0.00 3.82 F
1055 1099 0.166597 TCGCGACAACGTACTACCAG 59.833 55.0 3.71 0.0 41.98 4.00 F
2611 2808 0.037326 ACCAGTGCACGACGATGAAT 60.037 50.0 12.01 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1108 1159 0.468214 CCTGTCTCCTCCATCGGCTA 60.468 60.000 0.00 0.0 0.00 3.93 R
1611 1725 2.039624 GGGAGCTCCAGAGGGTCA 59.960 66.667 33.29 0.0 37.91 4.02 R
2702 2899 0.034863 AACATACACCGCCCGGAATT 60.035 50.000 14.44 0.0 38.96 2.17 R
3482 3708 2.145397 TGTAGGAAGGATGTCGAGCT 57.855 50.000 0.00 0.0 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.348594 GCACTTCAACGCCGCTATC 59.651 57.895 0.00 0.00 0.00 2.08
92 93 2.579787 CGGCGCTACAACCTCTCG 60.580 66.667 7.64 0.00 0.00 4.04
100 101 0.035725 TACAACCTCTCGCTCCTCGA 60.036 55.000 0.00 0.00 46.29 4.04
131 132 2.863809 CTGGCGGAGGGCTAAATTTAT 58.136 47.619 0.00 0.00 42.94 1.40
133 134 1.886542 GGCGGAGGGCTAAATTTATGG 59.113 52.381 0.00 0.00 42.94 2.74
137 138 4.319177 CGGAGGGCTAAATTTATGGAGAG 58.681 47.826 0.00 0.00 0.00 3.20
139 140 3.744660 AGGGCTAAATTTATGGAGAGCG 58.255 45.455 0.00 0.00 0.00 5.03
180 190 0.457851 CACGCAAAACCCCAACTTCA 59.542 50.000 0.00 0.00 0.00 3.02
188 198 2.185004 ACCCCAACTTCATTGACGAG 57.815 50.000 0.00 0.00 41.23 4.18
190 200 0.804989 CCCAACTTCATTGACGAGCC 59.195 55.000 0.00 0.00 41.23 4.70
191 201 1.522668 CCAACTTCATTGACGAGCCA 58.477 50.000 0.00 0.00 41.23 4.75
192 202 1.197721 CCAACTTCATTGACGAGCCAC 59.802 52.381 0.00 0.00 41.23 5.01
194 204 0.317160 ACTTCATTGACGAGCCACGA 59.683 50.000 7.86 0.00 45.77 4.35
196 206 1.014044 TTCATTGACGAGCCACGAGC 61.014 55.000 7.86 0.00 45.77 5.03
206 216 1.805945 GCCACGAGCTTGTACGAGG 60.806 63.158 6.21 5.44 41.59 4.63
228 238 4.221422 GCGCTCCATCCCGCTACA 62.221 66.667 0.00 0.00 46.14 2.74
229 239 2.499205 CGCTCCATCCCGCTACAA 59.501 61.111 0.00 0.00 0.00 2.41
230 240 1.883084 CGCTCCATCCCGCTACAAC 60.883 63.158 0.00 0.00 0.00 3.32
231 241 1.883084 GCTCCATCCCGCTACAACG 60.883 63.158 0.00 0.00 0.00 4.10
232 242 1.883084 CTCCATCCCGCTACAACGC 60.883 63.158 0.00 0.00 0.00 4.84
273 283 3.453070 GAGGTGGCGCAGGAGATCC 62.453 68.421 10.83 0.00 0.00 3.36
279 289 4.271816 CGCAGGAGATCCCGGACG 62.272 72.222 0.73 0.00 40.87 4.79
296 306 2.049063 GAGAACGCCGACAGCTGT 60.049 61.111 21.88 21.88 40.39 4.40
298 308 4.077188 GAACGCCGACAGCTGTGC 62.077 66.667 27.27 21.26 40.39 4.57
309 319 4.072088 GCTGTGCGTCGTTTCGGG 62.072 66.667 0.00 0.00 0.00 5.14
324 334 4.834911 GGGGTTCCGTGTCCATTT 57.165 55.556 0.00 0.00 0.00 2.32
325 335 3.045518 GGGGTTCCGTGTCCATTTT 57.954 52.632 0.00 0.00 0.00 1.82
326 336 0.601057 GGGGTTCCGTGTCCATTTTG 59.399 55.000 0.00 0.00 0.00 2.44
327 337 0.601057 GGGTTCCGTGTCCATTTTGG 59.399 55.000 0.00 0.00 39.43 3.28
328 338 1.324383 GGTTCCGTGTCCATTTTGGT 58.676 50.000 0.00 0.00 39.03 3.67
329 339 1.684450 GGTTCCGTGTCCATTTTGGTT 59.316 47.619 0.00 0.00 39.03 3.67
330 340 2.101750 GGTTCCGTGTCCATTTTGGTTT 59.898 45.455 0.00 0.00 39.03 3.27
331 341 3.431068 GGTTCCGTGTCCATTTTGGTTTT 60.431 43.478 0.00 0.00 39.03 2.43
332 342 4.185394 GTTCCGTGTCCATTTTGGTTTTT 58.815 39.130 0.00 0.00 39.03 1.94
354 364 7.439204 TTTTTAACACAATACAGACGCAAAC 57.561 32.000 0.00 0.00 0.00 2.93
356 366 1.070175 ACACAATACAGACGCAAACGC 60.070 47.619 0.00 0.00 45.53 4.84
357 367 1.194547 CACAATACAGACGCAAACGCT 59.805 47.619 0.00 0.00 45.53 5.07
358 368 1.459592 ACAATACAGACGCAAACGCTC 59.540 47.619 0.00 0.00 45.53 5.03
359 369 1.459209 CAATACAGACGCAAACGCTCA 59.541 47.619 0.00 0.00 45.53 4.26
360 370 2.010145 ATACAGACGCAAACGCTCAT 57.990 45.000 0.00 0.00 45.53 2.90
361 371 1.067693 TACAGACGCAAACGCTCATG 58.932 50.000 0.00 0.00 45.53 3.07
362 372 1.510623 CAGACGCAAACGCTCATGC 60.511 57.895 0.00 0.00 45.53 4.06
363 373 1.960763 AGACGCAAACGCTCATGCA 60.961 52.632 0.00 0.00 45.53 3.96
364 374 1.135315 GACGCAAACGCTCATGCAT 59.865 52.632 0.00 0.00 45.53 3.96
365 375 0.373370 GACGCAAACGCTCATGCATA 59.627 50.000 0.00 0.00 45.53 3.14
366 376 0.096976 ACGCAAACGCTCATGCATAC 59.903 50.000 0.00 0.00 45.53 2.39
367 377 0.920766 CGCAAACGCTCATGCATACG 60.921 55.000 12.73 12.73 42.68 3.06
368 378 1.196130 GCAAACGCTCATGCATACGC 61.196 55.000 13.88 11.41 42.12 4.42
377 387 4.825377 TGCATACGCGCATACACT 57.175 50.000 5.73 0.00 42.97 3.55
378 388 2.588731 TGCATACGCGCATACACTC 58.411 52.632 5.73 0.00 42.97 3.51
379 389 0.179124 TGCATACGCGCATACACTCA 60.179 50.000 5.73 0.00 42.97 3.41
380 390 0.229753 GCATACGCGCATACACTCAC 59.770 55.000 5.73 0.00 0.00 3.51
381 391 0.852777 CATACGCGCATACACTCACC 59.147 55.000 5.73 0.00 0.00 4.02
382 392 0.249322 ATACGCGCATACACTCACCC 60.249 55.000 5.73 0.00 0.00 4.61
383 393 2.287457 TACGCGCATACACTCACCCC 62.287 60.000 5.73 0.00 0.00 4.95
384 394 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
385 395 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
386 396 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
387 397 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
388 398 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
389 399 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
390 400 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
391 401 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
392 402 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
393 403 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
394 404 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
395 405 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
396 406 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
397 407 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
398 408 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
399 409 0.321210 CCCCTATGAACGCACACACA 60.321 55.000 0.00 0.00 0.00 3.72
400 410 0.796312 CCCTATGAACGCACACACAC 59.204 55.000 0.00 0.00 0.00 3.82
401 411 1.507562 CCTATGAACGCACACACACA 58.492 50.000 0.00 0.00 0.00 3.72
402 412 1.194547 CCTATGAACGCACACACACAC 59.805 52.381 0.00 0.00 0.00 3.82
403 413 1.194547 CTATGAACGCACACACACACC 59.805 52.381 0.00 0.00 0.00 4.16
404 414 0.746204 ATGAACGCACACACACACCA 60.746 50.000 0.00 0.00 0.00 4.17
405 415 0.746204 TGAACGCACACACACACCAT 60.746 50.000 0.00 0.00 0.00 3.55
406 416 1.222300 GAACGCACACACACACCATA 58.778 50.000 0.00 0.00 0.00 2.74
407 417 1.804151 GAACGCACACACACACCATAT 59.196 47.619 0.00 0.00 0.00 1.78
408 418 1.438651 ACGCACACACACACCATATC 58.561 50.000 0.00 0.00 0.00 1.63
409 419 1.001974 ACGCACACACACACCATATCT 59.998 47.619 0.00 0.00 0.00 1.98
410 420 1.660607 CGCACACACACACCATATCTC 59.339 52.381 0.00 0.00 0.00 2.75
411 421 2.675032 CGCACACACACACCATATCTCT 60.675 50.000 0.00 0.00 0.00 3.10
412 422 3.428862 CGCACACACACACCATATCTCTA 60.429 47.826 0.00 0.00 0.00 2.43
413 423 4.697514 GCACACACACACCATATCTCTAT 58.302 43.478 0.00 0.00 0.00 1.98
414 424 4.509230 GCACACACACACCATATCTCTATG 59.491 45.833 0.00 0.00 35.47 2.23
415 425 5.682212 GCACACACACACCATATCTCTATGA 60.682 44.000 0.00 0.00 37.51 2.15
416 426 5.981915 CACACACACACCATATCTCTATGAG 59.018 44.000 0.00 0.00 37.51 2.90
417 427 5.658634 ACACACACACCATATCTCTATGAGT 59.341 40.000 0.00 0.00 37.51 3.41
418 428 6.833933 ACACACACACCATATCTCTATGAGTA 59.166 38.462 0.00 0.00 37.51 2.59
419 429 7.142021 CACACACACCATATCTCTATGAGTAC 58.858 42.308 0.00 0.00 37.51 2.73
420 430 6.265649 ACACACACCATATCTCTATGAGTACC 59.734 42.308 0.00 0.00 37.51 3.34
421 431 6.491745 CACACACCATATCTCTATGAGTACCT 59.508 42.308 0.00 0.00 37.51 3.08
422 432 6.717540 ACACACCATATCTCTATGAGTACCTC 59.282 42.308 0.00 0.00 37.51 3.85
423 433 6.151985 CACACCATATCTCTATGAGTACCTCC 59.848 46.154 0.00 0.00 37.51 4.30
424 434 5.355630 CACCATATCTCTATGAGTACCTCCG 59.644 48.000 0.00 0.00 37.51 4.63
425 435 5.251005 ACCATATCTCTATGAGTACCTCCGA 59.749 44.000 0.00 0.00 37.51 4.55
426 436 6.181190 CCATATCTCTATGAGTACCTCCGAA 58.819 44.000 0.00 0.00 37.51 4.30
427 437 6.659668 CCATATCTCTATGAGTACCTCCGAAA 59.340 42.308 0.00 0.00 37.51 3.46
428 438 7.148154 CCATATCTCTATGAGTACCTCCGAAAG 60.148 44.444 0.00 0.00 37.51 2.62
429 439 5.369409 TCTCTATGAGTACCTCCGAAAGA 57.631 43.478 0.00 0.00 0.00 2.52
430 440 5.124645 TCTCTATGAGTACCTCCGAAAGAC 58.875 45.833 0.00 0.00 0.00 3.01
431 441 5.104444 TCTCTATGAGTACCTCCGAAAGACT 60.104 44.000 0.00 0.00 0.00 3.24
432 442 4.882427 TCTATGAGTACCTCCGAAAGACTG 59.118 45.833 0.00 0.00 0.00 3.51
433 443 3.150458 TGAGTACCTCCGAAAGACTGA 57.850 47.619 0.00 0.00 0.00 3.41
434 444 3.082548 TGAGTACCTCCGAAAGACTGAG 58.917 50.000 0.00 0.00 0.00 3.35
435 445 1.819903 AGTACCTCCGAAAGACTGAGC 59.180 52.381 0.00 0.00 0.00 4.26
436 446 1.819903 GTACCTCCGAAAGACTGAGCT 59.180 52.381 0.00 0.00 0.00 4.09
437 447 2.217510 ACCTCCGAAAGACTGAGCTA 57.782 50.000 0.00 0.00 0.00 3.32
438 448 2.526432 ACCTCCGAAAGACTGAGCTAA 58.474 47.619 0.00 0.00 0.00 3.09
439 449 2.231721 ACCTCCGAAAGACTGAGCTAAC 59.768 50.000 0.00 0.00 0.00 2.34
440 450 2.231478 CCTCCGAAAGACTGAGCTAACA 59.769 50.000 0.00 0.00 0.00 2.41
441 451 3.118956 CCTCCGAAAGACTGAGCTAACAT 60.119 47.826 0.00 0.00 0.00 2.71
442 452 4.098044 CCTCCGAAAGACTGAGCTAACATA 59.902 45.833 0.00 0.00 0.00 2.29
443 453 5.221342 CCTCCGAAAGACTGAGCTAACATAT 60.221 44.000 0.00 0.00 0.00 1.78
444 454 6.016192 CCTCCGAAAGACTGAGCTAACATATA 60.016 42.308 0.00 0.00 0.00 0.86
445 455 7.342769 TCCGAAAGACTGAGCTAACATATAA 57.657 36.000 0.00 0.00 0.00 0.98
446 456 7.952671 TCCGAAAGACTGAGCTAACATATAAT 58.047 34.615 0.00 0.00 0.00 1.28
447 457 8.421784 TCCGAAAGACTGAGCTAACATATAATT 58.578 33.333 0.00 0.00 0.00 1.40
448 458 9.046296 CCGAAAGACTGAGCTAACATATAATTT 57.954 33.333 0.00 0.00 0.00 1.82
468 478 9.932207 ATAATTTTGAGATTTGCAAAGTCATCA 57.068 25.926 21.50 16.69 34.65 3.07
469 479 8.665643 AATTTTGAGATTTGCAAAGTCATCAA 57.334 26.923 21.50 20.21 34.65 2.57
470 480 7.703298 TTTTGAGATTTGCAAAGTCATCAAG 57.297 32.000 21.50 0.00 34.65 3.02
471 481 6.638096 TTGAGATTTGCAAAGTCATCAAGA 57.362 33.333 21.50 8.84 34.65 3.02
472 482 6.638096 TGAGATTTGCAAAGTCATCAAGAA 57.362 33.333 18.19 0.00 34.65 2.52
473 483 7.223260 TGAGATTTGCAAAGTCATCAAGAAT 57.777 32.000 18.19 0.00 34.65 2.40
474 484 8.339344 TGAGATTTGCAAAGTCATCAAGAATA 57.661 30.769 18.19 0.00 34.65 1.75
475 485 8.795513 TGAGATTTGCAAAGTCATCAAGAATAA 58.204 29.630 18.19 0.00 34.65 1.40
476 486 9.798994 GAGATTTGCAAAGTCATCAAGAATAAT 57.201 29.630 18.19 0.00 34.65 1.28
477 487 9.582431 AGATTTGCAAAGTCATCAAGAATAATG 57.418 29.630 18.19 0.00 34.65 1.90
478 488 7.585286 TTTGCAAAGTCATCAAGAATAATGC 57.415 32.000 8.05 0.00 37.62 3.56
479 489 5.334319 TGCAAAGTCATCAAGAATAATGCG 58.666 37.500 0.00 0.00 39.01 4.73
480 490 5.123661 TGCAAAGTCATCAAGAATAATGCGA 59.876 36.000 0.00 0.00 39.01 5.10
481 491 5.680229 GCAAAGTCATCAAGAATAATGCGAG 59.320 40.000 0.00 0.00 31.02 5.03
482 492 5.415415 AAGTCATCAAGAATAATGCGAGC 57.585 39.130 0.00 0.00 0.00 5.03
483 493 4.445453 AGTCATCAAGAATAATGCGAGCA 58.555 39.130 0.00 0.00 0.00 4.26
484 494 5.061853 AGTCATCAAGAATAATGCGAGCAT 58.938 37.500 4.52 4.52 38.46 3.79
485 495 5.178996 AGTCATCAAGAATAATGCGAGCATC 59.821 40.000 11.26 0.00 35.31 3.91
486 496 5.049886 GTCATCAAGAATAATGCGAGCATCA 60.050 40.000 11.26 0.00 35.31 3.07
487 497 5.178809 TCATCAAGAATAATGCGAGCATCAG 59.821 40.000 11.26 0.00 35.31 2.90
488 498 3.811497 TCAAGAATAATGCGAGCATCAGG 59.189 43.478 11.26 0.00 35.31 3.86
489 499 3.758755 AGAATAATGCGAGCATCAGGA 57.241 42.857 11.26 0.00 35.31 3.86
490 500 3.397482 AGAATAATGCGAGCATCAGGAC 58.603 45.455 11.26 3.22 35.31 3.85
491 501 3.070734 AGAATAATGCGAGCATCAGGACT 59.929 43.478 11.26 5.26 35.31 3.85
492 502 2.988010 TAATGCGAGCATCAGGACTT 57.012 45.000 11.26 0.00 35.31 3.01
493 503 1.376543 AATGCGAGCATCAGGACTTG 58.623 50.000 11.26 0.00 35.31 3.16
494 504 0.538584 ATGCGAGCATCAGGACTTGA 59.461 50.000 4.52 0.00 40.85 3.02
495 505 0.321346 TGCGAGCATCAGGACTTGAA 59.679 50.000 0.00 0.00 39.77 2.69
496 506 0.723981 GCGAGCATCAGGACTTGAAC 59.276 55.000 0.00 0.00 39.77 3.18
497 507 1.363744 CGAGCATCAGGACTTGAACC 58.636 55.000 0.00 0.00 39.77 3.62
498 508 1.743996 GAGCATCAGGACTTGAACCC 58.256 55.000 0.00 0.00 39.77 4.11
499 509 1.280421 GAGCATCAGGACTTGAACCCT 59.720 52.381 0.00 0.00 39.77 4.34
503 513 3.329300 CAGGACTTGAACCCTGGTG 57.671 57.895 0.00 0.00 44.68 4.17
504 514 0.250901 CAGGACTTGAACCCTGGTGG 60.251 60.000 0.00 0.00 44.68 4.61
517 527 2.701551 CCTGGTGGGTTAGGGATATCA 58.298 52.381 4.83 0.00 0.00 2.15
518 528 3.260205 CCTGGTGGGTTAGGGATATCAT 58.740 50.000 4.83 0.00 0.00 2.45
519 529 3.657727 CCTGGTGGGTTAGGGATATCATT 59.342 47.826 4.83 0.00 0.00 2.57
520 530 4.507335 CCTGGTGGGTTAGGGATATCATTG 60.507 50.000 4.83 0.00 0.00 2.82
521 531 4.051478 TGGTGGGTTAGGGATATCATTGT 58.949 43.478 4.83 0.00 0.00 2.71
522 532 4.104102 TGGTGGGTTAGGGATATCATTGTC 59.896 45.833 4.83 0.00 0.00 3.18
523 533 4.506802 GGTGGGTTAGGGATATCATTGTCC 60.507 50.000 4.83 1.47 32.53 4.02
532 542 5.825593 GGATATCATTGTCCCTCTAACCA 57.174 43.478 4.83 0.00 0.00 3.67
533 543 6.380079 GGATATCATTGTCCCTCTAACCAT 57.620 41.667 4.83 0.00 0.00 3.55
534 544 6.410540 GGATATCATTGTCCCTCTAACCATC 58.589 44.000 4.83 0.00 0.00 3.51
535 545 4.713792 ATCATTGTCCCTCTAACCATCC 57.286 45.455 0.00 0.00 0.00 3.51
536 546 3.459828 TCATTGTCCCTCTAACCATCCA 58.540 45.455 0.00 0.00 0.00 3.41
537 547 3.849574 TCATTGTCCCTCTAACCATCCAA 59.150 43.478 0.00 0.00 0.00 3.53
538 548 3.713826 TTGTCCCTCTAACCATCCAAC 57.286 47.619 0.00 0.00 0.00 3.77
539 549 2.915869 TGTCCCTCTAACCATCCAACT 58.084 47.619 0.00 0.00 0.00 3.16
540 550 4.069312 TGTCCCTCTAACCATCCAACTA 57.931 45.455 0.00 0.00 0.00 2.24
541 551 3.773119 TGTCCCTCTAACCATCCAACTAC 59.227 47.826 0.00 0.00 0.00 2.73
542 552 3.773119 GTCCCTCTAACCATCCAACTACA 59.227 47.826 0.00 0.00 0.00 2.74
543 553 4.030913 TCCCTCTAACCATCCAACTACAG 58.969 47.826 0.00 0.00 0.00 2.74
544 554 3.134804 CCCTCTAACCATCCAACTACAGG 59.865 52.174 0.00 0.00 0.00 4.00
545 555 3.775316 CCTCTAACCATCCAACTACAGGT 59.225 47.826 0.00 0.00 0.00 4.00
546 556 4.225267 CCTCTAACCATCCAACTACAGGTT 59.775 45.833 0.00 0.00 44.23 3.50
565 575 3.120130 GGTTGATTCGCGTGTCCATTTTA 60.120 43.478 5.77 0.00 0.00 1.52
577 587 4.583073 GTGTCCATTTTAGGGTTGAGTGTT 59.417 41.667 0.00 0.00 0.00 3.32
590 600 1.271543 TGAGTGTTGGAGATGCCCTTG 60.272 52.381 0.00 0.00 34.97 3.61
605 615 0.404040 CCTTGGCTCCAAAGGTGGTA 59.596 55.000 2.69 0.00 46.11 3.25
608 618 2.032965 TGGCTCCAAAGGTGGTAGTA 57.967 50.000 0.00 0.00 46.11 1.82
618 628 3.097342 AGGTGGTAGTAGTTCGTCCAT 57.903 47.619 0.00 0.00 0.00 3.41
621 631 2.756760 GTGGTAGTAGTTCGTCCATCCA 59.243 50.000 0.00 0.00 0.00 3.41
684 716 0.969917 TTTGTTGGCCACACAGTGCT 60.970 50.000 3.88 0.00 33.98 4.40
841 876 8.863086 CCATCATGTTGAATAACCATTATCCTT 58.137 33.333 5.30 0.00 35.92 3.36
872 909 1.061131 CGGCTAACTTCATCAACGCAG 59.939 52.381 0.00 0.00 0.00 5.18
877 914 0.723414 ACTTCATCAACGCAGCATCG 59.277 50.000 0.00 0.00 0.00 3.84
878 915 0.723414 CTTCATCAACGCAGCATCGT 59.277 50.000 0.00 0.00 45.58 3.73
879 916 0.721154 TTCATCAACGCAGCATCGTC 59.279 50.000 3.80 0.00 42.46 4.20
880 917 0.389687 TCATCAACGCAGCATCGTCA 60.390 50.000 3.80 0.00 42.46 4.35
882 919 0.390340 ATCAACGCAGCATCGTCACT 60.390 50.000 3.80 0.00 42.46 3.41
886 923 2.010145 ACGCAGCATCGTCACTTTAT 57.990 45.000 0.00 0.00 38.44 1.40
933 974 3.056749 ACGGTGAGACTGCTAACTTTAGG 60.057 47.826 0.00 0.00 0.00 2.69
935 976 4.142138 CGGTGAGACTGCTAACTTTAGGAT 60.142 45.833 0.00 0.00 30.53 3.24
936 977 5.624738 CGGTGAGACTGCTAACTTTAGGATT 60.625 44.000 0.00 0.00 30.53 3.01
939 980 7.822822 GGTGAGACTGCTAACTTTAGGATTAAA 59.177 37.037 0.00 0.00 30.53 1.52
1037 1078 2.165030 TCCCGTAGATCGTCAAAGGTTC 59.835 50.000 0.00 0.00 37.94 3.62
1040 1081 1.582502 GTAGATCGTCAAAGGTTCGCG 59.417 52.381 0.00 0.00 0.00 5.87
1049 1090 0.854705 AAAGGTTCGCGACAACGTAC 59.145 50.000 9.15 2.32 41.98 3.67
1055 1099 0.166597 TCGCGACAACGTACTACCAG 59.833 55.000 3.71 0.00 41.98 4.00
1080 1124 2.436115 GCGCAACCCCACCTAGTC 60.436 66.667 0.30 0.00 0.00 2.59
1082 1126 2.939261 CGCAACCCCACCTAGTCGT 61.939 63.158 0.00 0.00 0.00 4.34
1085 1129 2.939261 AACCCCACCTAGTCGTGCG 61.939 63.158 0.00 0.00 32.10 5.34
1108 1159 1.913262 TGCAGTGTCCCGGTGATCT 60.913 57.895 0.00 0.00 0.00 2.75
1109 1160 0.613572 TGCAGTGTCCCGGTGATCTA 60.614 55.000 0.00 0.00 0.00 1.98
1120 1171 0.605589 GGTGATCTAGCCGATGGAGG 59.394 60.000 0.00 0.00 30.84 4.30
1121 1172 1.621992 GTGATCTAGCCGATGGAGGA 58.378 55.000 0.00 0.00 30.84 3.71
1281 1362 2.609920 GACCTCTCCTCCCCGGAT 59.390 66.667 0.73 0.00 42.12 4.18
1398 1479 2.504244 GAGCTCGTCCACCGTTCG 60.504 66.667 0.00 0.00 37.94 3.95
1474 1588 1.893919 GCCCGACTTCTTCTGCTCCT 61.894 60.000 0.00 0.00 0.00 3.69
1611 1725 2.439883 GAGTACCGCGACCTCCCT 60.440 66.667 8.23 0.00 0.00 4.20
1632 1746 4.787280 CCTCTGGAGCTCCCCGGT 62.787 72.222 29.95 0.00 34.21 5.28
1705 1825 4.111016 CGGTCTACGCGCACCTGA 62.111 66.667 17.54 0.00 34.82 3.86
1862 2006 4.025401 CGTCCGGCCAAGCACAAC 62.025 66.667 2.24 0.00 0.00 3.32
1864 2008 4.196778 TCCGGCCAAGCACAACCA 62.197 61.111 2.24 0.00 0.00 3.67
2528 2720 1.876416 GCTCGCCAAGGTGAAGTAACA 60.876 52.381 3.69 0.00 33.98 2.41
2535 2727 3.318017 CAAGGTGAAGTAACAGACGGAG 58.682 50.000 0.00 0.00 0.00 4.63
2573 2770 0.734253 TGTTTGTTGGCGTGTTGTGC 60.734 50.000 0.00 0.00 0.00 4.57
2575 2772 2.874010 TTTGTTGGCGTGTTGTGCGG 62.874 55.000 0.00 0.00 0.00 5.69
2577 2774 3.578272 TTGGCGTGTTGTGCGGAC 61.578 61.111 0.00 0.00 0.00 4.79
2580 2777 4.349871 GCGTGTTGTGCGGACGAC 62.350 66.667 19.69 19.69 37.04 4.34
2581 2778 2.657296 CGTGTTGTGCGGACGACT 60.657 61.111 25.44 0.00 37.38 4.18
2582 2779 1.370778 CGTGTTGTGCGGACGACTA 60.371 57.895 25.44 11.34 37.38 2.59
2583 2780 0.935831 CGTGTTGTGCGGACGACTAA 60.936 55.000 25.44 6.21 37.38 2.24
2584 2781 1.425412 GTGTTGTGCGGACGACTAAT 58.575 50.000 25.44 0.00 37.38 1.73
2585 2782 1.796459 GTGTTGTGCGGACGACTAATT 59.204 47.619 25.44 0.00 37.38 1.40
2586 2783 2.222445 GTGTTGTGCGGACGACTAATTT 59.778 45.455 25.44 0.00 37.38 1.82
2587 2784 3.429543 GTGTTGTGCGGACGACTAATTTA 59.570 43.478 25.44 4.05 37.38 1.40
2588 2785 3.676172 TGTTGTGCGGACGACTAATTTAG 59.324 43.478 25.44 1.79 37.38 1.85
2589 2786 3.853831 TGTGCGGACGACTAATTTAGA 57.146 42.857 10.39 0.00 0.00 2.10
2590 2787 3.504863 TGTGCGGACGACTAATTTAGAC 58.495 45.455 10.39 3.33 0.00 2.59
2591 2788 2.529090 GTGCGGACGACTAATTTAGACG 59.471 50.000 21.13 21.13 46.46 4.18
2592 2789 2.419673 TGCGGACGACTAATTTAGACGA 59.580 45.455 26.80 8.36 44.50 4.20
2593 2790 2.780557 GCGGACGACTAATTTAGACGAC 59.219 50.000 26.80 21.74 44.50 4.34
2597 2794 4.979388 GACGACTAATTTAGACGACCAGT 58.021 43.478 26.80 10.43 44.50 4.00
2598 2795 4.730657 ACGACTAATTTAGACGACCAGTG 58.269 43.478 26.80 4.83 44.50 3.66
2599 2796 3.546670 CGACTAATTTAGACGACCAGTGC 59.453 47.826 19.03 0.00 44.50 4.40
2600 2797 4.491676 GACTAATTTAGACGACCAGTGCA 58.508 43.478 10.39 0.00 0.00 4.57
2601 2798 4.243270 ACTAATTTAGACGACCAGTGCAC 58.757 43.478 9.40 9.40 0.00 4.57
2602 2799 1.710013 ATTTAGACGACCAGTGCACG 58.290 50.000 12.01 6.45 0.00 5.34
2603 2800 0.669619 TTTAGACGACCAGTGCACGA 59.330 50.000 12.01 0.00 0.00 4.35
2604 2801 0.039798 TTAGACGACCAGTGCACGAC 60.040 55.000 12.01 0.00 0.00 4.34
2605 2802 2.178892 TAGACGACCAGTGCACGACG 62.179 60.000 12.01 16.92 0.00 5.12
2606 2803 3.531920 GACGACCAGTGCACGACGA 62.532 63.158 24.88 0.00 0.00 4.20
2607 2804 2.126463 CGACCAGTGCACGACGAT 60.126 61.111 12.01 0.00 0.00 3.73
2608 2805 2.436539 CGACCAGTGCACGACGATG 61.437 63.158 12.01 3.42 0.00 3.84
2609 2806 1.080772 GACCAGTGCACGACGATGA 60.081 57.895 12.01 0.00 0.00 2.92
2610 2807 0.666274 GACCAGTGCACGACGATGAA 60.666 55.000 12.01 0.00 0.00 2.57
2611 2808 0.037326 ACCAGTGCACGACGATGAAT 60.037 50.000 12.01 0.00 0.00 2.57
2612 2809 0.647410 CCAGTGCACGACGATGAATC 59.353 55.000 12.01 0.00 0.00 2.52
2613 2810 0.647410 CAGTGCACGACGATGAATCC 59.353 55.000 12.01 0.00 0.00 3.01
2614 2811 0.460284 AGTGCACGACGATGAATCCC 60.460 55.000 12.01 0.00 0.00 3.85
2615 2812 0.739462 GTGCACGACGATGAATCCCA 60.739 55.000 0.00 0.00 0.00 4.37
2616 2813 0.460109 TGCACGACGATGAATCCCAG 60.460 55.000 0.00 0.00 0.00 4.45
2617 2814 1.766143 GCACGACGATGAATCCCAGC 61.766 60.000 0.00 0.00 0.00 4.85
2618 2815 1.144057 ACGACGATGAATCCCAGCC 59.856 57.895 0.00 0.00 0.00 4.85
2619 2816 1.143838 CGACGATGAATCCCAGCCA 59.856 57.895 0.00 0.00 0.00 4.75
2620 2817 1.154205 CGACGATGAATCCCAGCCAC 61.154 60.000 0.00 0.00 0.00 5.01
2621 2818 0.815615 GACGATGAATCCCAGCCACC 60.816 60.000 0.00 0.00 0.00 4.61
2622 2819 1.889105 CGATGAATCCCAGCCACCG 60.889 63.158 0.00 0.00 0.00 4.94
2623 2820 1.526887 GATGAATCCCAGCCACCGA 59.473 57.895 0.00 0.00 0.00 4.69
2624 2821 0.107214 GATGAATCCCAGCCACCGAA 60.107 55.000 0.00 0.00 0.00 4.30
2625 2822 0.331278 ATGAATCCCAGCCACCGAAA 59.669 50.000 0.00 0.00 0.00 3.46
2626 2823 0.608035 TGAATCCCAGCCACCGAAAC 60.608 55.000 0.00 0.00 0.00 2.78
2627 2824 0.322546 GAATCCCAGCCACCGAAACT 60.323 55.000 0.00 0.00 0.00 2.66
2628 2825 0.322546 AATCCCAGCCACCGAAACTC 60.323 55.000 0.00 0.00 0.00 3.01
2629 2826 2.521958 ATCCCAGCCACCGAAACTCG 62.522 60.000 0.00 0.00 40.07 4.18
2630 2827 2.030562 CCAGCCACCGAAACTCGT 59.969 61.111 0.00 0.00 38.40 4.18
2631 2828 2.027625 CCAGCCACCGAAACTCGTC 61.028 63.158 0.00 0.00 38.40 4.20
2632 2829 2.027625 CAGCCACCGAAACTCGTCC 61.028 63.158 0.00 0.00 38.40 4.79
2633 2830 2.029964 GCCACCGAAACTCGTCCA 59.970 61.111 0.00 0.00 38.40 4.02
2634 2831 2.315386 GCCACCGAAACTCGTCCAC 61.315 63.158 0.00 0.00 38.40 4.02
2635 2832 1.068417 CCACCGAAACTCGTCCACA 59.932 57.895 0.00 0.00 38.40 4.17
2636 2833 0.944311 CCACCGAAACTCGTCCACAG 60.944 60.000 0.00 0.00 38.40 3.66
2637 2834 1.300697 ACCGAAACTCGTCCACAGC 60.301 57.895 0.00 0.00 38.40 4.40
2638 2835 2.027625 CCGAAACTCGTCCACAGCC 61.028 63.158 0.00 0.00 38.40 4.85
2639 2836 2.027625 CGAAACTCGTCCACAGCCC 61.028 63.158 0.00 0.00 34.72 5.19
2640 2837 1.070786 GAAACTCGTCCACAGCCCA 59.929 57.895 0.00 0.00 0.00 5.36
2641 2838 0.321653 GAAACTCGTCCACAGCCCAT 60.322 55.000 0.00 0.00 0.00 4.00
2642 2839 0.981183 AAACTCGTCCACAGCCCATA 59.019 50.000 0.00 0.00 0.00 2.74
2643 2840 0.249398 AACTCGTCCACAGCCCATAC 59.751 55.000 0.00 0.00 0.00 2.39
2644 2841 0.614979 ACTCGTCCACAGCCCATACT 60.615 55.000 0.00 0.00 0.00 2.12
2645 2842 0.103208 CTCGTCCACAGCCCATACTC 59.897 60.000 0.00 0.00 0.00 2.59
2646 2843 0.324368 TCGTCCACAGCCCATACTCT 60.324 55.000 0.00 0.00 0.00 3.24
2647 2844 0.179100 CGTCCACAGCCCATACTCTG 60.179 60.000 0.00 0.00 36.45 3.35
2648 2845 0.905357 GTCCACAGCCCATACTCTGT 59.095 55.000 0.00 0.00 43.67 3.41
2649 2846 1.279271 GTCCACAGCCCATACTCTGTT 59.721 52.381 0.00 0.00 41.19 3.16
2650 2847 1.555075 TCCACAGCCCATACTCTGTTC 59.445 52.381 0.00 0.00 41.19 3.18
2651 2848 1.645034 CACAGCCCATACTCTGTTCG 58.355 55.000 0.00 0.00 41.19 3.95
2652 2849 0.108138 ACAGCCCATACTCTGTTCGC 60.108 55.000 0.00 0.00 40.32 4.70
2653 2850 0.176680 CAGCCCATACTCTGTTCGCT 59.823 55.000 0.00 0.00 0.00 4.93
2654 2851 0.176680 AGCCCATACTCTGTTCGCTG 59.823 55.000 0.00 0.00 0.00 5.18
2655 2852 0.811616 GCCCATACTCTGTTCGCTGG 60.812 60.000 0.00 0.00 0.00 4.85
2656 2853 0.824109 CCCATACTCTGTTCGCTGGA 59.176 55.000 0.00 0.00 0.00 3.86
2657 2854 1.414181 CCCATACTCTGTTCGCTGGAT 59.586 52.381 0.00 0.00 0.00 3.41
2658 2855 2.158900 CCCATACTCTGTTCGCTGGATT 60.159 50.000 0.00 0.00 0.00 3.01
2659 2856 3.535561 CCATACTCTGTTCGCTGGATTT 58.464 45.455 0.00 0.00 0.00 2.17
2660 2857 4.442893 CCCATACTCTGTTCGCTGGATTTA 60.443 45.833 0.00 0.00 0.00 1.40
2661 2858 5.300752 CCATACTCTGTTCGCTGGATTTAT 58.699 41.667 0.00 0.00 0.00 1.40
2662 2859 5.760253 CCATACTCTGTTCGCTGGATTTATT 59.240 40.000 0.00 0.00 0.00 1.40
2663 2860 6.293081 CCATACTCTGTTCGCTGGATTTATTG 60.293 42.308 0.00 0.00 0.00 1.90
2664 2861 4.579869 ACTCTGTTCGCTGGATTTATTGT 58.420 39.130 0.00 0.00 0.00 2.71
2665 2862 4.631813 ACTCTGTTCGCTGGATTTATTGTC 59.368 41.667 0.00 0.00 0.00 3.18
2666 2863 3.616821 TCTGTTCGCTGGATTTATTGTCG 59.383 43.478 0.00 0.00 0.00 4.35
2667 2864 3.331150 TGTTCGCTGGATTTATTGTCGT 58.669 40.909 0.00 0.00 0.00 4.34
2668 2865 3.749088 TGTTCGCTGGATTTATTGTCGTT 59.251 39.130 0.00 0.00 0.00 3.85
2669 2866 4.142988 TGTTCGCTGGATTTATTGTCGTTC 60.143 41.667 0.00 0.00 0.00 3.95
2670 2867 3.591023 TCGCTGGATTTATTGTCGTTCA 58.409 40.909 0.00 0.00 0.00 3.18
2671 2868 4.188462 TCGCTGGATTTATTGTCGTTCAT 58.812 39.130 0.00 0.00 0.00 2.57
2672 2869 4.033932 TCGCTGGATTTATTGTCGTTCATG 59.966 41.667 0.00 0.00 0.00 3.07
2673 2870 4.601019 GCTGGATTTATTGTCGTTCATGG 58.399 43.478 0.00 0.00 0.00 3.66
2674 2871 4.335315 GCTGGATTTATTGTCGTTCATGGA 59.665 41.667 0.00 0.00 0.00 3.41
2675 2872 5.009010 GCTGGATTTATTGTCGTTCATGGAT 59.991 40.000 0.00 0.00 0.00 3.41
2676 2873 6.618287 TGGATTTATTGTCGTTCATGGATC 57.382 37.500 0.00 0.00 0.00 3.36
2677 2874 5.236263 TGGATTTATTGTCGTTCATGGATCG 59.764 40.000 0.00 0.00 0.00 3.69
2678 2875 5.334105 GGATTTATTGTCGTTCATGGATCGG 60.334 44.000 0.00 0.00 0.00 4.18
2679 2876 1.299541 ATTGTCGTTCATGGATCGGC 58.700 50.000 0.00 0.00 31.23 5.54
2680 2877 0.742990 TTGTCGTTCATGGATCGGCC 60.743 55.000 0.00 0.00 29.74 6.13
2688 2885 4.883240 TGGATCGGCCACATGATG 57.117 55.556 2.24 0.00 43.33 3.07
2689 2886 1.914475 TGGATCGGCCACATGATGT 59.086 52.632 2.24 0.00 43.33 3.06
2690 2887 0.179048 TGGATCGGCCACATGATGTC 60.179 55.000 2.24 0.00 43.33 3.06
2691 2888 1.224069 GGATCGGCCACATGATGTCG 61.224 60.000 2.24 2.98 36.34 4.35
2692 2889 0.530650 GATCGGCCACATGATGTCGT 60.531 55.000 2.24 0.00 0.00 4.34
2693 2890 0.811219 ATCGGCCACATGATGTCGTG 60.811 55.000 2.24 0.80 38.76 4.35
2694 2891 1.741401 CGGCCACATGATGTCGTGT 60.741 57.895 2.24 2.10 46.18 4.49
2699 2896 3.304041 ACATGATGTCGTGTGTGCA 57.696 47.368 7.05 0.00 43.82 4.57
2700 2897 1.150827 ACATGATGTCGTGTGTGCAG 58.849 50.000 7.05 0.00 43.82 4.41
2701 2898 0.179207 CATGATGTCGTGTGTGCAGC 60.179 55.000 0.00 0.00 0.00 5.25
2702 2899 0.603439 ATGATGTCGTGTGTGCAGCA 60.603 50.000 0.00 0.00 33.01 4.41
2703 2900 0.813210 TGATGTCGTGTGTGCAGCAA 60.813 50.000 0.00 0.00 0.00 3.91
2704 2901 0.518636 GATGTCGTGTGTGCAGCAAT 59.481 50.000 0.00 0.00 0.00 3.56
2705 2902 0.953727 ATGTCGTGTGTGCAGCAATT 59.046 45.000 0.00 0.00 0.00 2.32
2706 2903 0.307453 TGTCGTGTGTGCAGCAATTC 59.693 50.000 0.00 0.00 0.00 2.17
2707 2904 0.385974 GTCGTGTGTGCAGCAATTCC 60.386 55.000 0.00 0.00 0.00 3.01
2708 2905 1.440850 CGTGTGTGCAGCAATTCCG 60.441 57.895 0.00 0.00 0.00 4.30
2716 2913 4.344865 AGCAATTCCGGGCGGTGT 62.345 61.111 0.00 0.00 36.47 4.16
2728 2925 0.732538 GGCGGTGTATGTTTGCTTGC 60.733 55.000 0.00 0.00 0.00 4.01
2732 2929 2.061028 GGTGTATGTTTGCTTGCTTGC 58.939 47.619 0.00 0.00 0.00 4.01
2735 2932 0.728803 TATGTTTGCTTGCTTGCGCG 60.729 50.000 0.00 0.00 39.65 6.86
2768 2965 2.499289 AGGCTCGTCTGACTTTGATGAT 59.501 45.455 6.21 0.00 0.00 2.45
2819 3016 1.154093 CACTTCTGCGCTGCATTGG 60.154 57.895 9.73 0.00 38.13 3.16
2820 3017 2.338015 ACTTCTGCGCTGCATTGGG 61.338 57.895 9.73 0.00 38.13 4.12
2821 3018 2.033911 TTCTGCGCTGCATTGGGA 59.966 55.556 9.73 0.00 38.13 4.37
2822 3019 1.378911 TTCTGCGCTGCATTGGGAT 60.379 52.632 9.73 0.00 38.13 3.85
2823 3020 0.107263 TTCTGCGCTGCATTGGGATA 60.107 50.000 9.73 0.00 38.13 2.59
2824 3021 0.533531 TCTGCGCTGCATTGGGATAG 60.534 55.000 9.73 0.00 38.13 2.08
2825 3022 2.126417 CTGCGCTGCATTGGGATAGC 62.126 60.000 9.73 0.00 38.13 2.97
2826 3023 2.188829 GCGCTGCATTGGGATAGCA 61.189 57.895 0.00 0.00 35.98 3.49
2829 3026 4.585070 TGCATTGGGATAGCAGCC 57.415 55.556 0.00 0.00 33.75 4.85
2830 3027 1.152694 TGCATTGGGATAGCAGCCC 60.153 57.895 2.86 2.86 46.22 5.19
2918 3118 2.991434 GATACAATCGGCGCTAGAGA 57.009 50.000 7.64 2.33 0.00 3.10
2930 3130 1.730121 CGCTAGAGACGGTTTTGCGTA 60.730 52.381 0.00 0.00 37.62 4.42
2935 3135 1.862827 GAGACGGTTTTGCGTACAGTT 59.137 47.619 0.00 0.00 0.00 3.16
2938 3138 1.738908 ACGGTTTTGCGTACAGTTGTT 59.261 42.857 0.00 0.00 0.00 2.83
2943 3143 0.464735 TTGCGTACAGTTGTTGCCCT 60.465 50.000 0.00 0.00 0.00 5.19
2947 3147 1.270094 CGTACAGTTGTTGCCCTCAGA 60.270 52.381 0.00 0.00 0.00 3.27
2949 3149 0.179018 ACAGTTGTTGCCCTCAGACC 60.179 55.000 0.00 0.00 0.00 3.85
2966 3166 3.375438 CCCGAAATTGGGCTGCAA 58.625 55.556 0.50 0.00 43.70 4.08
2967 3167 1.670590 CCCGAAATTGGGCTGCAAA 59.329 52.632 0.50 0.00 43.70 3.68
2968 3168 0.390209 CCCGAAATTGGGCTGCAAAG 60.390 55.000 0.50 0.00 43.70 2.77
2969 3169 0.318120 CCGAAATTGGGCTGCAAAGT 59.682 50.000 0.50 0.00 0.00 2.66
2970 3170 1.421382 CGAAATTGGGCTGCAAAGTG 58.579 50.000 0.50 0.00 0.00 3.16
2971 3171 1.799544 GAAATTGGGCTGCAAAGTGG 58.200 50.000 0.50 0.00 0.00 4.00
2976 3176 3.688159 GGCTGCAAAGTGGGCCAG 61.688 66.667 6.40 0.00 43.59 4.85
2977 3177 2.914097 GCTGCAAAGTGGGCCAGT 60.914 61.111 6.40 7.51 0.00 4.00
2978 3178 1.603455 GCTGCAAAGTGGGCCAGTA 60.603 57.895 15.67 0.00 0.00 2.74
2979 3179 1.589716 GCTGCAAAGTGGGCCAGTAG 61.590 60.000 15.67 11.67 0.00 2.57
2980 3180 0.036732 CTGCAAAGTGGGCCAGTAGA 59.963 55.000 15.67 0.00 0.00 2.59
2981 3181 0.698238 TGCAAAGTGGGCCAGTAGAT 59.302 50.000 15.67 1.02 0.00 1.98
2982 3182 1.075374 TGCAAAGTGGGCCAGTAGATT 59.925 47.619 15.67 2.20 0.00 2.40
2984 3184 2.795329 CAAAGTGGGCCAGTAGATTGT 58.205 47.619 15.67 0.00 0.00 2.71
2987 3187 2.200081 AGTGGGCCAGTAGATTGTGAT 58.800 47.619 13.44 0.00 0.00 3.06
3354 3580 4.448210 GTGTCAAACACTGGGTCTTCTTA 58.552 43.478 3.03 0.00 45.27 2.10
3369 3595 3.939592 TCTTCTTACTCGCTCTCGATGAA 59.060 43.478 0.00 0.00 44.56 2.57
3482 3708 0.758310 TTGGAGCACACCAAATGCCA 60.758 50.000 7.41 0.00 45.36 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 4.143333 TTGTAGCGCCGCTCCTCC 62.143 66.667 18.06 2.63 40.44 4.30
74 75 2.886124 GAGAGGTTGTAGCGCCGC 60.886 66.667 2.29 0.00 0.00 6.53
79 80 0.101579 GAGGAGCGAGAGGTTGTAGC 59.898 60.000 0.00 0.00 45.11 3.58
80 81 0.378962 CGAGGAGCGAGAGGTTGTAG 59.621 60.000 0.00 0.00 45.11 2.74
114 115 2.814336 CTCCATAAATTTAGCCCTCCGC 59.186 50.000 3.94 0.00 37.98 5.54
116 117 4.075682 GCTCTCCATAAATTTAGCCCTCC 58.924 47.826 3.94 0.00 0.00 4.30
119 120 2.226674 GCGCTCTCCATAAATTTAGCCC 59.773 50.000 0.00 0.00 0.00 5.19
123 124 1.525197 CGCGCGCTCTCCATAAATTTA 59.475 47.619 30.48 0.00 0.00 1.40
156 157 3.310307 GGGGTTTTGCGTGGCCAT 61.310 61.111 9.72 0.00 0.00 4.40
165 175 3.067461 TCGTCAATGAAGTTGGGGTTTTG 59.933 43.478 0.00 0.00 38.39 2.44
167 177 2.884639 CTCGTCAATGAAGTTGGGGTTT 59.115 45.455 0.00 0.00 38.39 3.27
188 198 1.805945 CCTCGTACAAGCTCGTGGC 60.806 63.158 1.36 0.00 42.19 5.01
190 200 1.805945 GGCCTCGTACAAGCTCGTG 60.806 63.158 0.00 0.00 0.00 4.35
191 201 2.572284 GGCCTCGTACAAGCTCGT 59.428 61.111 0.00 0.00 0.00 4.18
192 202 2.579787 CGGCCTCGTACAAGCTCG 60.580 66.667 0.00 0.00 0.00 5.03
194 204 4.796231 CGCGGCCTCGTACAAGCT 62.796 66.667 7.05 0.00 38.89 3.74
215 225 2.185867 GCGTTGTAGCGGGATGGA 59.814 61.111 0.00 0.00 0.00 3.41
230 240 1.410737 CCATCTACACCACGAACGCG 61.411 60.000 3.53 3.53 44.79 6.01
231 241 0.108992 TCCATCTACACCACGAACGC 60.109 55.000 0.00 0.00 0.00 4.84
232 242 1.625616 GTCCATCTACACCACGAACG 58.374 55.000 0.00 0.00 0.00 3.95
233 243 1.200716 TCGTCCATCTACACCACGAAC 59.799 52.381 0.00 0.00 36.59 3.95
234 244 1.471287 CTCGTCCATCTACACCACGAA 59.529 52.381 0.00 0.00 38.90 3.85
235 245 1.092348 CTCGTCCATCTACACCACGA 58.908 55.000 0.00 0.00 37.85 4.35
236 246 0.100682 CCTCGTCCATCTACACCACG 59.899 60.000 0.00 0.00 0.00 4.94
237 247 1.405821 CTCCTCGTCCATCTACACCAC 59.594 57.143 0.00 0.00 0.00 4.16
238 248 1.685180 CCTCCTCGTCCATCTACACCA 60.685 57.143 0.00 0.00 0.00 4.17
239 249 1.033574 CCTCCTCGTCCATCTACACC 58.966 60.000 0.00 0.00 0.00 4.16
289 299 2.585869 CGAAACGACGCACAGCTGT 61.586 57.895 15.25 15.25 0.00 4.40
296 306 2.662527 GAACCCCGAAACGACGCA 60.663 61.111 0.00 0.00 0.00 5.24
309 319 1.324383 ACCAAAATGGACACGGAACC 58.676 50.000 2.85 0.00 40.96 3.62
330 340 6.194876 CGTTTGCGTCTGTATTGTGTTAAAAA 59.805 34.615 0.00 0.00 0.00 1.94
331 341 5.677612 CGTTTGCGTCTGTATTGTGTTAAAA 59.322 36.000 0.00 0.00 0.00 1.52
332 342 5.199000 CGTTTGCGTCTGTATTGTGTTAAA 58.801 37.500 0.00 0.00 0.00 1.52
333 343 4.763874 CGTTTGCGTCTGTATTGTGTTAA 58.236 39.130 0.00 0.00 0.00 2.01
334 344 3.363182 GCGTTTGCGTCTGTATTGTGTTA 60.363 43.478 0.00 0.00 40.81 2.41
335 345 2.601266 GCGTTTGCGTCTGTATTGTGTT 60.601 45.455 0.00 0.00 40.81 3.32
336 346 1.070175 GCGTTTGCGTCTGTATTGTGT 60.070 47.619 0.00 0.00 40.81 3.72
337 347 1.591248 GCGTTTGCGTCTGTATTGTG 58.409 50.000 0.00 0.00 40.81 3.33
349 359 1.196130 GCGTATGCATGAGCGTTTGC 61.196 55.000 10.16 1.48 46.23 3.68
350 360 0.920766 CGCGTATGCATGAGCGTTTG 60.921 55.000 29.83 12.14 46.48 2.93
351 361 1.348250 CGCGTATGCATGAGCGTTT 59.652 52.632 29.83 0.35 46.48 3.60
352 362 3.005898 CGCGTATGCATGAGCGTT 58.994 55.556 29.83 1.05 46.48 4.84
361 371 0.229753 GTGAGTGTATGCGCGTATGC 59.770 55.000 20.45 18.97 37.91 3.14
362 372 0.852777 GGTGAGTGTATGCGCGTATG 59.147 55.000 20.45 0.00 0.00 2.39
363 373 0.249322 GGGTGAGTGTATGCGCGTAT 60.249 55.000 15.52 15.52 0.00 3.06
364 374 1.140161 GGGTGAGTGTATGCGCGTA 59.860 57.895 8.43 4.92 0.00 4.42
365 375 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
366 376 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
367 377 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
368 378 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
369 379 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
370 380 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
371 381 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
372 382 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
373 383 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
374 384 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
375 385 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
376 386 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
377 387 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
378 388 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
379 389 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
380 390 0.321210 TGTGTGTGCGTTCATAGGGG 60.321 55.000 0.00 0.00 0.00 4.79
381 391 0.796312 GTGTGTGTGCGTTCATAGGG 59.204 55.000 0.00 0.00 0.00 3.53
382 392 1.194547 GTGTGTGTGTGCGTTCATAGG 59.805 52.381 0.00 0.00 0.00 2.57
383 393 1.194547 GGTGTGTGTGTGCGTTCATAG 59.805 52.381 0.00 0.00 0.00 2.23
384 394 1.222300 GGTGTGTGTGTGCGTTCATA 58.778 50.000 0.00 0.00 0.00 2.15
385 395 0.746204 TGGTGTGTGTGTGCGTTCAT 60.746 50.000 0.00 0.00 0.00 2.57
386 396 0.746204 ATGGTGTGTGTGTGCGTTCA 60.746 50.000 0.00 0.00 0.00 3.18
387 397 1.222300 TATGGTGTGTGTGTGCGTTC 58.778 50.000 0.00 0.00 0.00 3.95
388 398 1.804151 GATATGGTGTGTGTGTGCGTT 59.196 47.619 0.00 0.00 0.00 4.84
389 399 1.001974 AGATATGGTGTGTGTGTGCGT 59.998 47.619 0.00 0.00 0.00 5.24
390 400 1.660607 GAGATATGGTGTGTGTGTGCG 59.339 52.381 0.00 0.00 0.00 5.34
391 401 2.977914 AGAGATATGGTGTGTGTGTGC 58.022 47.619 0.00 0.00 0.00 4.57
392 402 5.906073 TCATAGAGATATGGTGTGTGTGTG 58.094 41.667 0.00 0.00 0.00 3.82
393 403 5.658634 ACTCATAGAGATATGGTGTGTGTGT 59.341 40.000 0.31 0.00 33.32 3.72
394 404 6.154203 ACTCATAGAGATATGGTGTGTGTG 57.846 41.667 0.31 0.00 33.32 3.82
395 405 6.265649 GGTACTCATAGAGATATGGTGTGTGT 59.734 42.308 0.31 0.00 33.32 3.72
396 406 6.491745 AGGTACTCATAGAGATATGGTGTGTG 59.508 42.308 0.31 0.00 33.32 3.82
397 407 6.615617 AGGTACTCATAGAGATATGGTGTGT 58.384 40.000 0.31 0.00 33.32 3.72
415 425 2.555670 AGCTCAGTCTTTCGGAGGTACT 60.556 50.000 0.00 0.00 44.46 2.73
416 426 1.819903 AGCTCAGTCTTTCGGAGGTAC 59.180 52.381 0.00 0.00 44.46 3.34
417 427 2.217510 AGCTCAGTCTTTCGGAGGTA 57.782 50.000 0.00 0.00 44.46 3.08
418 428 2.217510 TAGCTCAGTCTTTCGGAGGT 57.782 50.000 0.00 0.00 46.85 3.85
419 429 2.231478 TGTTAGCTCAGTCTTTCGGAGG 59.769 50.000 0.00 0.00 38.48 4.30
420 430 3.577649 TGTTAGCTCAGTCTTTCGGAG 57.422 47.619 0.00 0.00 40.44 4.63
421 431 5.854010 ATATGTTAGCTCAGTCTTTCGGA 57.146 39.130 0.00 0.00 0.00 4.55
422 432 8.594881 AATTATATGTTAGCTCAGTCTTTCGG 57.405 34.615 0.00 0.00 0.00 4.30
442 452 9.932207 TGATGACTTTGCAAATCTCAAAATTAT 57.068 25.926 13.23 0.92 33.60 1.28
443 453 9.761504 TTGATGACTTTGCAAATCTCAAAATTA 57.238 25.926 13.23 0.00 33.60 1.40
444 454 8.665643 TTGATGACTTTGCAAATCTCAAAATT 57.334 26.923 13.23 1.94 33.60 1.82
445 455 8.145767 TCTTGATGACTTTGCAAATCTCAAAAT 58.854 29.630 13.23 2.27 33.60 1.82
446 456 7.490840 TCTTGATGACTTTGCAAATCTCAAAA 58.509 30.769 13.23 12.96 33.60 2.44
447 457 7.041635 TCTTGATGACTTTGCAAATCTCAAA 57.958 32.000 13.23 7.84 33.04 2.69
448 458 6.638096 TCTTGATGACTTTGCAAATCTCAA 57.362 33.333 13.23 16.08 0.00 3.02
449 459 6.638096 TTCTTGATGACTTTGCAAATCTCA 57.362 33.333 13.23 15.90 0.00 3.27
450 460 9.798994 ATTATTCTTGATGACTTTGCAAATCTC 57.201 29.630 13.23 10.77 0.00 2.75
451 461 9.582431 CATTATTCTTGATGACTTTGCAAATCT 57.418 29.630 13.23 0.29 0.00 2.40
452 462 8.325997 GCATTATTCTTGATGACTTTGCAAATC 58.674 33.333 13.23 12.52 0.00 2.17
453 463 7.009815 CGCATTATTCTTGATGACTTTGCAAAT 59.990 33.333 13.23 3.03 0.00 2.32
454 464 6.308524 CGCATTATTCTTGATGACTTTGCAAA 59.691 34.615 12.14 12.14 0.00 3.68
455 465 5.801444 CGCATTATTCTTGATGACTTTGCAA 59.199 36.000 0.00 0.00 0.00 4.08
456 466 5.123661 TCGCATTATTCTTGATGACTTTGCA 59.876 36.000 0.00 0.00 0.00 4.08
457 467 5.572211 TCGCATTATTCTTGATGACTTTGC 58.428 37.500 0.00 0.00 0.00 3.68
458 468 5.680229 GCTCGCATTATTCTTGATGACTTTG 59.320 40.000 0.00 0.00 0.00 2.77
459 469 5.355071 TGCTCGCATTATTCTTGATGACTTT 59.645 36.000 0.00 0.00 0.00 2.66
460 470 4.877823 TGCTCGCATTATTCTTGATGACTT 59.122 37.500 0.00 0.00 0.00 3.01
461 471 4.445453 TGCTCGCATTATTCTTGATGACT 58.555 39.130 0.00 0.00 0.00 3.41
462 472 4.801147 TGCTCGCATTATTCTTGATGAC 57.199 40.909 0.00 0.00 0.00 3.06
463 473 5.058490 TGATGCTCGCATTATTCTTGATGA 58.942 37.500 5.79 0.00 36.70 2.92
464 474 5.352643 TGATGCTCGCATTATTCTTGATG 57.647 39.130 5.79 0.00 36.70 3.07
465 475 4.454847 CCTGATGCTCGCATTATTCTTGAT 59.545 41.667 5.79 0.00 36.70 2.57
466 476 3.811497 CCTGATGCTCGCATTATTCTTGA 59.189 43.478 5.79 0.00 36.70 3.02
467 477 3.811497 TCCTGATGCTCGCATTATTCTTG 59.189 43.478 5.79 0.00 36.70 3.02
468 478 3.812053 GTCCTGATGCTCGCATTATTCTT 59.188 43.478 5.79 0.00 36.70 2.52
469 479 3.070734 AGTCCTGATGCTCGCATTATTCT 59.929 43.478 5.79 0.02 36.70 2.40
470 480 3.397482 AGTCCTGATGCTCGCATTATTC 58.603 45.455 5.79 0.00 36.70 1.75
471 481 3.482156 AGTCCTGATGCTCGCATTATT 57.518 42.857 5.79 0.00 36.70 1.40
472 482 3.136763 CAAGTCCTGATGCTCGCATTAT 58.863 45.455 5.79 0.00 36.70 1.28
473 483 2.168313 TCAAGTCCTGATGCTCGCATTA 59.832 45.455 5.79 0.89 36.70 1.90
474 484 1.065926 TCAAGTCCTGATGCTCGCATT 60.066 47.619 5.79 0.00 36.70 3.56
475 485 0.538584 TCAAGTCCTGATGCTCGCAT 59.461 50.000 3.70 3.70 39.69 4.73
476 486 0.321346 TTCAAGTCCTGATGCTCGCA 59.679 50.000 0.00 0.00 32.78 5.10
477 487 0.723981 GTTCAAGTCCTGATGCTCGC 59.276 55.000 0.00 0.00 32.78 5.03
478 488 1.363744 GGTTCAAGTCCTGATGCTCG 58.636 55.000 0.00 0.00 32.78 5.03
479 489 1.280421 AGGGTTCAAGTCCTGATGCTC 59.720 52.381 0.00 0.00 32.78 4.26
480 490 1.366319 AGGGTTCAAGTCCTGATGCT 58.634 50.000 0.00 0.00 32.78 3.79
481 491 3.965888 AGGGTTCAAGTCCTGATGC 57.034 52.632 0.00 0.00 32.78 3.91
486 496 2.155065 CCACCAGGGTTCAAGTCCT 58.845 57.895 0.00 0.00 0.00 3.85
487 497 4.821935 CCACCAGGGTTCAAGTCC 57.178 61.111 0.00 0.00 0.00 3.85
497 507 2.701551 TGATATCCCTAACCCACCAGG 58.298 52.381 0.00 0.00 43.78 4.45
498 508 4.104738 ACAATGATATCCCTAACCCACCAG 59.895 45.833 0.00 0.00 0.00 4.00
499 509 4.051478 ACAATGATATCCCTAACCCACCA 58.949 43.478 0.00 0.00 0.00 4.17
500 510 4.506802 GGACAATGATATCCCTAACCCACC 60.507 50.000 0.00 0.00 0.00 4.61
501 511 4.652822 GGACAATGATATCCCTAACCCAC 58.347 47.826 0.00 0.00 0.00 4.61
502 512 4.993705 GGACAATGATATCCCTAACCCA 57.006 45.455 0.00 0.00 0.00 4.51
510 520 5.825593 TGGTTAGAGGGACAATGATATCC 57.174 43.478 0.00 0.00 0.00 2.59
511 521 6.013379 TGGATGGTTAGAGGGACAATGATATC 60.013 42.308 0.00 0.00 0.00 1.63
512 522 5.851693 TGGATGGTTAGAGGGACAATGATAT 59.148 40.000 0.00 0.00 0.00 1.63
513 523 5.223655 TGGATGGTTAGAGGGACAATGATA 58.776 41.667 0.00 0.00 0.00 2.15
514 524 4.047166 TGGATGGTTAGAGGGACAATGAT 58.953 43.478 0.00 0.00 0.00 2.45
515 525 3.459828 TGGATGGTTAGAGGGACAATGA 58.540 45.455 0.00 0.00 0.00 2.57
516 526 3.931907 TGGATGGTTAGAGGGACAATG 57.068 47.619 0.00 0.00 0.00 2.82
517 527 3.852578 AGTTGGATGGTTAGAGGGACAAT 59.147 43.478 0.00 0.00 0.00 2.71
518 528 3.256704 AGTTGGATGGTTAGAGGGACAA 58.743 45.455 0.00 0.00 0.00 3.18
519 529 2.915869 AGTTGGATGGTTAGAGGGACA 58.084 47.619 0.00 0.00 0.00 4.02
520 530 3.773119 TGTAGTTGGATGGTTAGAGGGAC 59.227 47.826 0.00 0.00 0.00 4.46
521 531 4.030913 CTGTAGTTGGATGGTTAGAGGGA 58.969 47.826 0.00 0.00 0.00 4.20
522 532 3.134804 CCTGTAGTTGGATGGTTAGAGGG 59.865 52.174 0.00 0.00 0.00 4.30
523 533 3.775316 ACCTGTAGTTGGATGGTTAGAGG 59.225 47.826 0.00 0.00 33.91 3.69
524 534 5.422214 AACCTGTAGTTGGATGGTTAGAG 57.578 43.478 0.00 0.00 38.99 2.43
536 546 2.066262 CACGCGAATCAACCTGTAGTT 58.934 47.619 15.93 0.00 40.16 2.24
537 547 1.000506 ACACGCGAATCAACCTGTAGT 59.999 47.619 15.93 0.00 0.00 2.73
538 548 1.654105 GACACGCGAATCAACCTGTAG 59.346 52.381 15.93 0.00 0.00 2.74
539 549 1.670674 GGACACGCGAATCAACCTGTA 60.671 52.381 15.93 0.00 0.00 2.74
540 550 0.949105 GGACACGCGAATCAACCTGT 60.949 55.000 15.93 3.11 0.00 4.00
541 551 0.948623 TGGACACGCGAATCAACCTG 60.949 55.000 15.93 0.00 0.00 4.00
542 552 0.036388 ATGGACACGCGAATCAACCT 60.036 50.000 15.93 0.00 0.00 3.50
543 553 0.802494 AATGGACACGCGAATCAACC 59.198 50.000 15.93 7.81 0.00 3.77
544 554 2.611974 AAATGGACACGCGAATCAAC 57.388 45.000 15.93 0.00 0.00 3.18
545 555 3.126171 CCTAAAATGGACACGCGAATCAA 59.874 43.478 15.93 2.98 0.00 2.57
546 556 2.675844 CCTAAAATGGACACGCGAATCA 59.324 45.455 15.93 5.84 0.00 2.57
547 557 2.031683 CCCTAAAATGGACACGCGAATC 59.968 50.000 15.93 9.73 0.00 2.52
548 558 2.014128 CCCTAAAATGGACACGCGAAT 58.986 47.619 15.93 0.00 0.00 3.34
549 559 1.270947 ACCCTAAAATGGACACGCGAA 60.271 47.619 15.93 0.00 0.00 4.70
550 560 0.322322 ACCCTAAAATGGACACGCGA 59.678 50.000 15.93 0.00 0.00 5.87
551 561 1.135803 CAACCCTAAAATGGACACGCG 60.136 52.381 3.53 3.53 0.00 6.01
552 562 2.156098 TCAACCCTAAAATGGACACGC 58.844 47.619 0.00 0.00 0.00 5.34
565 575 1.271597 GCATCTCCAACACTCAACCCT 60.272 52.381 0.00 0.00 0.00 4.34
595 605 3.006110 TGGACGAACTACTACCACCTTTG 59.994 47.826 0.00 0.00 0.00 2.77
605 615 4.935808 GTGATTTTGGATGGACGAACTACT 59.064 41.667 0.00 0.00 0.00 2.57
608 618 3.081804 GGTGATTTTGGATGGACGAACT 58.918 45.455 0.00 0.00 0.00 3.01
618 628 3.591527 ACATAGGACAGGGTGATTTTGGA 59.408 43.478 0.00 0.00 0.00 3.53
621 631 6.994421 AAAAACATAGGACAGGGTGATTTT 57.006 33.333 0.00 0.00 0.00 1.82
841 876 2.211250 AGTTAGCCGTCTCCACACTA 57.789 50.000 0.00 0.00 0.00 2.74
908 949 2.171840 AGTTAGCAGTCTCACCGTGAT 58.828 47.619 0.62 0.00 0.00 3.06
960 1001 9.841295 GCCATCGGGACCTAAATTATATATTAA 57.159 33.333 0.00 0.00 35.59 1.40
961 1002 9.220906 AGCCATCGGGACCTAAATTATATATTA 57.779 33.333 0.00 0.00 35.59 0.98
962 1003 8.102484 AGCCATCGGGACCTAAATTATATATT 57.898 34.615 0.00 0.00 35.59 1.28
963 1004 7.569111 AGAGCCATCGGGACCTAAATTATATAT 59.431 37.037 0.00 0.00 35.59 0.86
964 1005 6.901300 AGAGCCATCGGGACCTAAATTATATA 59.099 38.462 0.00 0.00 35.59 0.86
965 1006 5.726793 AGAGCCATCGGGACCTAAATTATAT 59.273 40.000 0.00 0.00 35.59 0.86
966 1007 5.091552 AGAGCCATCGGGACCTAAATTATA 58.908 41.667 0.00 0.00 35.59 0.98
967 1008 3.910627 AGAGCCATCGGGACCTAAATTAT 59.089 43.478 0.00 0.00 35.59 1.28
968 1009 3.314693 AGAGCCATCGGGACCTAAATTA 58.685 45.455 0.00 0.00 35.59 1.40
969 1010 2.104963 GAGAGCCATCGGGACCTAAATT 59.895 50.000 0.00 0.00 35.59 1.82
970 1011 1.694696 GAGAGCCATCGGGACCTAAAT 59.305 52.381 0.00 0.00 35.59 1.40
971 1012 1.120530 GAGAGCCATCGGGACCTAAA 58.879 55.000 0.00 0.00 35.59 1.85
972 1013 0.032515 TGAGAGCCATCGGGACCTAA 60.033 55.000 0.00 0.00 35.59 2.69
973 1014 0.188587 ATGAGAGCCATCGGGACCTA 59.811 55.000 0.00 0.00 35.59 3.08
974 1015 0.188587 TATGAGAGCCATCGGGACCT 59.811 55.000 0.00 0.00 36.71 3.85
980 1021 7.039853 AGGATATGTATGATATGAGAGCCATCG 60.040 40.741 0.00 0.00 36.71 3.84
1037 1078 1.400990 GCTGGTAGTACGTTGTCGCG 61.401 60.000 0.00 0.00 41.18 5.87
1040 1081 3.243336 CAGAAGCTGGTAGTACGTTGTC 58.757 50.000 0.00 0.00 0.00 3.18
1049 1090 3.558411 GCGCGCAGAAGCTGGTAG 61.558 66.667 29.10 0.00 39.10 3.18
1108 1159 0.468214 CCTGTCTCCTCCATCGGCTA 60.468 60.000 0.00 0.00 0.00 3.93
1109 1160 1.760086 CCTGTCTCCTCCATCGGCT 60.760 63.158 0.00 0.00 0.00 5.52
1120 1171 3.827898 CCGCTCGGTCCCTGTCTC 61.828 72.222 0.00 0.00 0.00 3.36
1611 1725 2.039624 GGGAGCTCCAGAGGGTCA 59.960 66.667 33.29 0.00 37.91 4.02
1746 1866 3.491964 CCAACTCGTAGAAGGTGTTCACA 60.492 47.826 5.32 0.00 34.82 3.58
2363 2555 3.174265 CCCCCTCCATCAGCTCCC 61.174 72.222 0.00 0.00 0.00 4.30
2528 2720 3.382832 CGCTTCCCACCTCCGTCT 61.383 66.667 0.00 0.00 0.00 4.18
2535 2727 2.438434 CCATGACCGCTTCCCACC 60.438 66.667 0.00 0.00 0.00 4.61
2573 2770 3.181507 TGGTCGTCTAAATTAGTCGTCCG 60.182 47.826 21.75 10.06 43.70 4.79
2575 2772 4.792189 CACTGGTCGTCTAAATTAGTCGTC 59.208 45.833 16.44 12.11 38.25 4.20
2577 2774 3.546670 GCACTGGTCGTCTAAATTAGTCG 59.453 47.826 12.18 12.18 38.40 4.18
2578 2775 4.326548 GTGCACTGGTCGTCTAAATTAGTC 59.673 45.833 10.32 0.00 0.00 2.59
2579 2776 4.243270 GTGCACTGGTCGTCTAAATTAGT 58.757 43.478 10.32 0.00 0.00 2.24
2580 2777 3.303495 CGTGCACTGGTCGTCTAAATTAG 59.697 47.826 16.19 0.00 0.00 1.73
2581 2778 3.057386 TCGTGCACTGGTCGTCTAAATTA 60.057 43.478 16.19 0.00 0.00 1.40
2582 2779 2.066262 CGTGCACTGGTCGTCTAAATT 58.934 47.619 16.19 0.00 0.00 1.82
2583 2780 1.271379 TCGTGCACTGGTCGTCTAAAT 59.729 47.619 16.19 0.00 0.00 1.40
2584 2781 0.669619 TCGTGCACTGGTCGTCTAAA 59.330 50.000 16.19 0.00 0.00 1.85
2585 2782 0.039798 GTCGTGCACTGGTCGTCTAA 60.040 55.000 16.19 0.00 0.00 2.10
2586 2783 1.577922 GTCGTGCACTGGTCGTCTA 59.422 57.895 16.19 0.00 0.00 2.59
2587 2784 2.335369 GTCGTGCACTGGTCGTCT 59.665 61.111 16.19 0.00 0.00 4.18
2588 2785 2.797866 ATCGTCGTGCACTGGTCGTC 62.798 60.000 16.19 0.00 0.00 4.20
2589 2786 2.916052 ATCGTCGTGCACTGGTCGT 61.916 57.895 16.19 3.04 0.00 4.34
2590 2787 2.126463 ATCGTCGTGCACTGGTCG 60.126 61.111 16.19 13.31 0.00 4.79
2591 2788 0.666274 TTCATCGTCGTGCACTGGTC 60.666 55.000 16.19 1.56 0.00 4.02
2592 2789 0.037326 ATTCATCGTCGTGCACTGGT 60.037 50.000 16.19 0.00 0.00 4.00
2593 2790 0.647410 GATTCATCGTCGTGCACTGG 59.353 55.000 16.19 3.75 0.00 4.00
2594 2791 0.647410 GGATTCATCGTCGTGCACTG 59.353 55.000 16.19 8.79 0.00 3.66
2595 2792 0.460284 GGGATTCATCGTCGTGCACT 60.460 55.000 16.19 0.00 0.00 4.40
2596 2793 0.739462 TGGGATTCATCGTCGTGCAC 60.739 55.000 6.82 6.82 0.00 4.57
2597 2794 0.460109 CTGGGATTCATCGTCGTGCA 60.460 55.000 0.00 0.00 0.00 4.57
2598 2795 1.766143 GCTGGGATTCATCGTCGTGC 61.766 60.000 0.00 0.00 0.00 5.34
2599 2796 1.154205 GGCTGGGATTCATCGTCGTG 61.154 60.000 0.00 0.00 0.00 4.35
2600 2797 1.144057 GGCTGGGATTCATCGTCGT 59.856 57.895 0.00 0.00 0.00 4.34
2601 2798 1.143838 TGGCTGGGATTCATCGTCG 59.856 57.895 0.00 0.00 0.00 5.12
2602 2799 0.815615 GGTGGCTGGGATTCATCGTC 60.816 60.000 0.00 0.00 0.00 4.20
2603 2800 1.224592 GGTGGCTGGGATTCATCGT 59.775 57.895 0.00 0.00 0.00 3.73
2604 2801 1.889105 CGGTGGCTGGGATTCATCG 60.889 63.158 0.00 0.00 0.00 3.84
2605 2802 0.107214 TTCGGTGGCTGGGATTCATC 60.107 55.000 0.00 0.00 0.00 2.92
2606 2803 0.331278 TTTCGGTGGCTGGGATTCAT 59.669 50.000 0.00 0.00 0.00 2.57
2607 2804 0.608035 GTTTCGGTGGCTGGGATTCA 60.608 55.000 0.00 0.00 0.00 2.57
2608 2805 0.322546 AGTTTCGGTGGCTGGGATTC 60.323 55.000 0.00 0.00 0.00 2.52
2609 2806 0.322546 GAGTTTCGGTGGCTGGGATT 60.323 55.000 0.00 0.00 0.00 3.01
2610 2807 1.299976 GAGTTTCGGTGGCTGGGAT 59.700 57.895 0.00 0.00 0.00 3.85
2611 2808 2.747686 GAGTTTCGGTGGCTGGGA 59.252 61.111 0.00 0.00 0.00 4.37
2612 2809 2.742372 CGAGTTTCGGTGGCTGGG 60.742 66.667 0.00 0.00 36.00 4.45
2613 2810 2.027625 GACGAGTTTCGGTGGCTGG 61.028 63.158 3.37 0.00 45.59 4.85
2614 2811 2.027625 GGACGAGTTTCGGTGGCTG 61.028 63.158 3.37 0.00 45.59 4.85
2615 2812 2.342648 GGACGAGTTTCGGTGGCT 59.657 61.111 3.37 0.00 45.59 4.75
2616 2813 2.029964 TGGACGAGTTTCGGTGGC 59.970 61.111 3.37 0.00 45.59 5.01
2617 2814 0.944311 CTGTGGACGAGTTTCGGTGG 60.944 60.000 3.37 0.00 45.59 4.61
2618 2815 1.557443 GCTGTGGACGAGTTTCGGTG 61.557 60.000 3.37 0.00 45.59 4.94
2619 2816 1.300697 GCTGTGGACGAGTTTCGGT 60.301 57.895 3.37 0.00 45.59 4.69
2620 2817 2.027625 GGCTGTGGACGAGTTTCGG 61.028 63.158 3.37 0.00 45.59 4.30
2621 2818 2.027625 GGGCTGTGGACGAGTTTCG 61.028 63.158 0.00 0.00 46.93 3.46
2622 2819 0.321653 ATGGGCTGTGGACGAGTTTC 60.322 55.000 0.00 0.00 0.00 2.78
2623 2820 0.981183 TATGGGCTGTGGACGAGTTT 59.019 50.000 0.00 0.00 0.00 2.66
2624 2821 0.249398 GTATGGGCTGTGGACGAGTT 59.751 55.000 0.00 0.00 0.00 3.01
2625 2822 0.614979 AGTATGGGCTGTGGACGAGT 60.615 55.000 0.00 0.00 0.00 4.18
2626 2823 0.103208 GAGTATGGGCTGTGGACGAG 59.897 60.000 0.00 0.00 0.00 4.18
2627 2824 0.324368 AGAGTATGGGCTGTGGACGA 60.324 55.000 0.00 0.00 0.00 4.20
2628 2825 0.179100 CAGAGTATGGGCTGTGGACG 60.179 60.000 0.00 0.00 0.00 4.79
2629 2826 0.905357 ACAGAGTATGGGCTGTGGAC 59.095 55.000 0.00 0.00 43.26 4.02
2630 2827 1.555075 GAACAGAGTATGGGCTGTGGA 59.445 52.381 0.00 0.00 44.06 4.02
2631 2828 1.740380 CGAACAGAGTATGGGCTGTGG 60.740 57.143 0.00 0.00 44.06 4.17
2632 2829 1.645034 CGAACAGAGTATGGGCTGTG 58.355 55.000 0.00 0.00 44.06 3.66
2633 2830 0.108138 GCGAACAGAGTATGGGCTGT 60.108 55.000 0.00 0.00 46.59 4.40
2634 2831 0.176680 AGCGAACAGAGTATGGGCTG 59.823 55.000 0.33 0.00 34.19 4.85
2635 2832 0.176680 CAGCGAACAGAGTATGGGCT 59.823 55.000 0.00 0.00 35.32 5.19
2636 2833 0.811616 CCAGCGAACAGAGTATGGGC 60.812 60.000 0.00 0.00 0.00 5.36
2637 2834 0.824109 TCCAGCGAACAGAGTATGGG 59.176 55.000 0.00 0.00 0.00 4.00
2638 2835 2.898729 ATCCAGCGAACAGAGTATGG 57.101 50.000 0.00 0.00 0.00 2.74
2639 2836 6.258727 ACAATAAATCCAGCGAACAGAGTATG 59.741 38.462 0.00 0.00 0.00 2.39
2640 2837 6.349300 ACAATAAATCCAGCGAACAGAGTAT 58.651 36.000 0.00 0.00 0.00 2.12
2641 2838 5.730550 ACAATAAATCCAGCGAACAGAGTA 58.269 37.500 0.00 0.00 0.00 2.59
2642 2839 4.579869 ACAATAAATCCAGCGAACAGAGT 58.420 39.130 0.00 0.00 0.00 3.24
2643 2840 4.259970 CGACAATAAATCCAGCGAACAGAG 60.260 45.833 0.00 0.00 0.00 3.35
2644 2841 3.616821 CGACAATAAATCCAGCGAACAGA 59.383 43.478 0.00 0.00 0.00 3.41
2645 2842 3.370978 ACGACAATAAATCCAGCGAACAG 59.629 43.478 0.00 0.00 0.00 3.16
2646 2843 3.331150 ACGACAATAAATCCAGCGAACA 58.669 40.909 0.00 0.00 0.00 3.18
2647 2844 4.142988 TGAACGACAATAAATCCAGCGAAC 60.143 41.667 0.00 0.00 0.00 3.95
2648 2845 3.997681 TGAACGACAATAAATCCAGCGAA 59.002 39.130 0.00 0.00 0.00 4.70
2649 2846 3.591023 TGAACGACAATAAATCCAGCGA 58.409 40.909 0.00 0.00 0.00 4.93
2650 2847 4.274069 CATGAACGACAATAAATCCAGCG 58.726 43.478 0.00 0.00 0.00 5.18
2651 2848 4.335315 TCCATGAACGACAATAAATCCAGC 59.665 41.667 0.00 0.00 0.00 4.85
2652 2849 6.564686 CGATCCATGAACGACAATAAATCCAG 60.565 42.308 0.00 0.00 29.49 3.86
2653 2850 5.236263 CGATCCATGAACGACAATAAATCCA 59.764 40.000 0.00 0.00 29.49 3.41
2654 2851 5.334105 CCGATCCATGAACGACAATAAATCC 60.334 44.000 0.00 0.00 29.49 3.01
2655 2852 5.679906 CCGATCCATGAACGACAATAAATC 58.320 41.667 0.00 0.00 29.49 2.17
2656 2853 4.024048 GCCGATCCATGAACGACAATAAAT 60.024 41.667 0.00 0.00 29.49 1.40
2657 2854 3.311322 GCCGATCCATGAACGACAATAAA 59.689 43.478 0.00 0.00 29.49 1.40
2658 2855 2.869801 GCCGATCCATGAACGACAATAA 59.130 45.455 0.00 0.00 29.49 1.40
2659 2856 2.479837 GCCGATCCATGAACGACAATA 58.520 47.619 0.00 0.00 29.49 1.90
2660 2857 1.299541 GCCGATCCATGAACGACAAT 58.700 50.000 0.00 0.00 29.49 2.71
2661 2858 0.742990 GGCCGATCCATGAACGACAA 60.743 55.000 0.00 0.00 29.49 3.18
2662 2859 1.153449 GGCCGATCCATGAACGACA 60.153 57.895 0.00 0.00 29.49 4.35
2663 2860 1.153449 TGGCCGATCCATGAACGAC 60.153 57.895 0.00 0.00 40.72 4.34
2664 2861 3.304251 TGGCCGATCCATGAACGA 58.696 55.556 0.00 0.00 40.72 3.85
2671 2868 0.179048 GACATCATGTGGCCGATCCA 60.179 55.000 0.00 0.00 44.18 3.41
2672 2869 1.224069 CGACATCATGTGGCCGATCC 61.224 60.000 0.00 0.00 29.16 3.36
2673 2870 0.530650 ACGACATCATGTGGCCGATC 60.531 55.000 0.00 0.00 33.92 3.69
2674 2871 0.811219 CACGACATCATGTGGCCGAT 60.811 55.000 0.00 0.00 33.92 4.18
2675 2872 1.447663 CACGACATCATGTGGCCGA 60.448 57.895 0.00 0.00 33.92 5.54
2676 2873 1.741401 ACACGACATCATGTGGCCG 60.741 57.895 0.00 0.00 40.39 6.13
2677 2874 1.796151 CACACGACATCATGTGGCC 59.204 57.895 0.00 0.00 42.08 5.36
2681 2878 1.150827 CTGCACACACGACATCATGT 58.849 50.000 0.00 0.00 0.00 3.21
2682 2879 0.179207 GCTGCACACACGACATCATG 60.179 55.000 0.00 0.00 0.00 3.07
2683 2880 0.603439 TGCTGCACACACGACATCAT 60.603 50.000 0.00 0.00 0.00 2.45
2684 2881 0.813210 TTGCTGCACACACGACATCA 60.813 50.000 0.00 0.00 0.00 3.07
2685 2882 0.518636 ATTGCTGCACACACGACATC 59.481 50.000 0.00 0.00 0.00 3.06
2686 2883 0.953727 AATTGCTGCACACACGACAT 59.046 45.000 0.00 0.00 0.00 3.06
2687 2884 0.307453 GAATTGCTGCACACACGACA 59.693 50.000 0.00 0.00 0.00 4.35
2688 2885 0.385974 GGAATTGCTGCACACACGAC 60.386 55.000 0.00 0.00 0.00 4.34
2689 2886 1.840630 CGGAATTGCTGCACACACGA 61.841 55.000 0.00 0.00 0.00 4.35
2690 2887 1.440850 CGGAATTGCTGCACACACG 60.441 57.895 0.00 1.42 0.00 4.49
2691 2888 1.081242 CCGGAATTGCTGCACACAC 60.081 57.895 0.00 0.00 0.00 3.82
2692 2889 2.267351 CCCGGAATTGCTGCACACA 61.267 57.895 0.73 0.00 0.00 3.72
2693 2890 2.568090 CCCGGAATTGCTGCACAC 59.432 61.111 0.73 0.00 0.00 3.82
2694 2891 3.372730 GCCCGGAATTGCTGCACA 61.373 61.111 0.73 0.00 0.00 4.57
2695 2892 4.481112 CGCCCGGAATTGCTGCAC 62.481 66.667 0.73 0.00 0.00 4.57
2698 2895 3.814268 CACCGCCCGGAATTGCTG 61.814 66.667 14.44 0.00 38.96 4.41
2699 2896 2.265467 ATACACCGCCCGGAATTGCT 62.265 55.000 14.44 0.00 38.96 3.91
2700 2897 1.822186 ATACACCGCCCGGAATTGC 60.822 57.895 14.44 0.00 38.96 3.56
2701 2898 0.746563 ACATACACCGCCCGGAATTG 60.747 55.000 14.44 4.01 38.96 2.32
2702 2899 0.034863 AACATACACCGCCCGGAATT 60.035 50.000 14.44 0.00 38.96 2.17
2703 2900 0.034863 AAACATACACCGCCCGGAAT 60.035 50.000 14.44 3.34 38.96 3.01
2704 2901 0.956410 CAAACATACACCGCCCGGAA 60.956 55.000 14.44 0.00 38.96 4.30
2705 2902 1.376166 CAAACATACACCGCCCGGA 60.376 57.895 14.44 0.00 38.96 5.14
2706 2903 3.046497 GCAAACATACACCGCCCGG 62.046 63.158 4.96 4.96 42.03 5.73
2707 2904 1.582610 AAGCAAACATACACCGCCCG 61.583 55.000 0.00 0.00 0.00 6.13
2708 2905 0.109319 CAAGCAAACATACACCGCCC 60.109 55.000 0.00 0.00 0.00 6.13
2728 2925 2.788786 CCTTTTATTAATGCCGCGCAAG 59.211 45.455 8.75 0.00 43.62 4.01
2732 2929 2.650608 GAGCCTTTTATTAATGCCGCG 58.349 47.619 0.00 0.00 0.00 6.46
2735 2932 4.574828 TCAGACGAGCCTTTTATTAATGCC 59.425 41.667 0.00 0.00 0.00 4.40
2799 2996 0.453950 CAATGCAGCGCAGAAGTGAC 60.454 55.000 11.47 0.00 43.65 3.67
2802 2999 2.338015 CCCAATGCAGCGCAGAAGT 61.338 57.895 11.47 0.00 43.65 3.01
2829 3026 1.272147 GGCTTGGGATGCCCTTATAGG 60.272 57.143 0.00 0.00 45.70 2.57
2830 3027 2.206576 GGCTTGGGATGCCCTTATAG 57.793 55.000 0.00 0.00 45.70 1.31
2914 3114 1.068127 ACTGTACGCAAAACCGTCTCT 59.932 47.619 0.00 0.00 42.20 3.10
2916 3116 1.595794 CAACTGTACGCAAAACCGTCT 59.404 47.619 0.00 0.00 42.20 4.18
2918 3118 1.371595 ACAACTGTACGCAAAACCGT 58.628 45.000 0.00 0.00 44.62 4.83
2930 3130 0.179018 GGTCTGAGGGCAACAACTGT 60.179 55.000 0.00 0.00 39.74 3.55
2935 3135 3.636231 CGGGGTCTGAGGGCAACA 61.636 66.667 0.00 0.00 39.74 3.33
2938 3138 1.497309 AATTTCGGGGTCTGAGGGCA 61.497 55.000 0.00 0.00 0.00 5.36
2960 3160 1.589716 CTACTGGCCCACTTTGCAGC 61.590 60.000 0.00 0.00 0.00 5.25
2962 3162 0.698238 ATCTACTGGCCCACTTTGCA 59.302 50.000 0.00 0.00 0.00 4.08
2965 3165 2.375174 TCACAATCTACTGGCCCACTTT 59.625 45.455 0.00 0.00 0.00 2.66
2966 3166 1.985159 TCACAATCTACTGGCCCACTT 59.015 47.619 0.00 0.00 0.00 3.16
2967 3167 1.656587 TCACAATCTACTGGCCCACT 58.343 50.000 0.00 0.00 0.00 4.00
2968 3168 2.565841 GATCACAATCTACTGGCCCAC 58.434 52.381 0.00 0.00 0.00 4.61
2969 3169 1.138859 CGATCACAATCTACTGGCCCA 59.861 52.381 0.00 0.00 0.00 5.36
2970 3170 1.412710 TCGATCACAATCTACTGGCCC 59.587 52.381 0.00 0.00 0.00 5.80
2971 3171 2.362397 TCTCGATCACAATCTACTGGCC 59.638 50.000 0.00 0.00 0.00 5.36
2975 3175 5.047660 GGCCTATTCTCGATCACAATCTACT 60.048 44.000 0.00 0.00 0.00 2.57
2976 3176 5.164954 GGCCTATTCTCGATCACAATCTAC 58.835 45.833 0.00 0.00 0.00 2.59
2977 3177 4.220821 GGGCCTATTCTCGATCACAATCTA 59.779 45.833 0.84 0.00 0.00 1.98
2978 3178 3.007398 GGGCCTATTCTCGATCACAATCT 59.993 47.826 0.84 0.00 0.00 2.40
2979 3179 3.244215 TGGGCCTATTCTCGATCACAATC 60.244 47.826 4.53 0.00 0.00 2.67
2980 3180 2.705658 TGGGCCTATTCTCGATCACAAT 59.294 45.455 4.53 0.00 0.00 2.71
2981 3181 2.115427 TGGGCCTATTCTCGATCACAA 58.885 47.619 4.53 0.00 0.00 3.33
2982 3182 1.788229 TGGGCCTATTCTCGATCACA 58.212 50.000 4.53 0.00 0.00 3.58
2984 3184 4.142160 CGAATATGGGCCTATTCTCGATCA 60.142 45.833 20.94 0.62 36.42 2.92
2987 3187 2.496070 CCGAATATGGGCCTATTCTCGA 59.504 50.000 24.84 2.92 36.42 4.04
3369 3595 2.950975 TGTGTCATCTTGCACAACATGT 59.049 40.909 0.00 0.00 41.89 3.21
3482 3708 2.145397 TGTAGGAAGGATGTCGAGCT 57.855 50.000 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.