Multiple sequence alignment - TraesCS2A01G478100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G478100 chr2A 100.000 4520 0 0 1 4520 717136853 717141372 0.000000e+00 8347.0
1 TraesCS2A01G478100 chr2A 97.358 492 13 0 1 492 717122089 717122580 0.000000e+00 837.0
2 TraesCS2A01G478100 chr2D 95.368 4037 149 31 493 4520 579386539 579390546 0.000000e+00 6384.0
3 TraesCS2A01G478100 chr2B 93.512 3622 177 33 929 4520 696670707 696674300 0.000000e+00 5334.0
4 TraesCS2A01G478100 chr2B 93.602 422 22 4 493 912 696670305 696670723 3.840000e-175 625.0
5 TraesCS2A01G478100 chr6A 80.300 2198 352 58 937 3101 36108532 36106383 0.000000e+00 1585.0
6 TraesCS2A01G478100 chr6A 84.279 1005 134 17 929 1931 36252435 36251453 0.000000e+00 959.0
7 TraesCS2A01G478100 chr6A 77.630 675 125 16 2488 3146 36250921 36250257 1.970000e-103 387.0
8 TraesCS2A01G478100 chr6A 82.410 415 67 6 500 911 36252831 36252420 1.550000e-94 357.0
9 TraesCS2A01G478100 chr6A 82.952 393 55 7 3158 3540 36106356 36105966 1.200000e-90 344.0
10 TraesCS2A01G478100 chr6B 80.200 2197 324 70 937 3084 67130635 67128501 0.000000e+00 1544.0
11 TraesCS2A01G478100 chr6B 80.200 2197 324 73 937 3084 67323157 67321023 0.000000e+00 1544.0
12 TraesCS2A01G478100 chr6B 79.436 2198 353 57 937 3101 66970649 66968518 0.000000e+00 1463.0
13 TraesCS2A01G478100 chr6B 84.898 980 124 21 930 1908 68749332 68750288 0.000000e+00 968.0
14 TraesCS2A01G478100 chr6B 84.163 1004 132 24 930 1931 68782816 68781838 0.000000e+00 948.0
15 TraesCS2A01G478100 chr6B 78.320 1250 210 41 1927 3146 66990440 66989222 0.000000e+00 750.0
16 TraesCS2A01G478100 chr6B 77.814 1226 201 49 1927 3122 67228739 67227555 0.000000e+00 691.0
17 TraesCS2A01G478100 chr6B 77.589 1062 197 28 2488 3531 68751196 68752234 5.000000e-169 604.0
18 TraesCS2A01G478100 chr6B 77.767 994 185 25 2555 3531 68780442 68779468 3.030000e-161 579.0
19 TraesCS2A01G478100 chr6B 82.645 484 74 8 2653 3132 67409131 67408654 1.940000e-113 420.0
20 TraesCS2A01G478100 chr6B 82.937 463 58 17 1927 2377 67409797 67409344 9.110000e-107 398.0
21 TraesCS2A01G478100 chr6B 86.084 309 41 2 3233 3540 66989147 66988840 9.370000e-87 331.0
22 TraesCS2A01G478100 chr6B 85.906 298 42 0 3242 3539 67128354 67128057 7.300000e-83 318.0
23 TraesCS2A01G478100 chr6B 80.282 426 75 7 493 912 67131049 67130627 3.390000e-81 313.0
24 TraesCS2A01G478100 chr6B 85.235 298 44 0 3242 3539 67320876 67320579 1.580000e-79 307.0
25 TraesCS2A01G478100 chr6B 80.000 410 76 5 505 911 67258728 67258322 9.510000e-77 298.0
26 TraesCS2A01G478100 chr6B 78.657 417 68 12 500 911 68748946 68749346 1.610000e-64 257.0
27 TraesCS2A01G478100 chr6D 85.500 1000 116 20 937 1931 31753995 31753020 0.000000e+00 1016.0
28 TraesCS2A01G478100 chr6D 76.710 1228 225 45 1927 3130 31752993 31751803 1.070000e-175 627.0
29 TraesCS2A01G478100 chr6D 82.328 481 69 10 1914 2384 23439011 23438537 1.960000e-108 403.0
30 TraesCS2A01G478100 chr6D 82.328 481 69 10 1914 2384 31769132 31768658 1.960000e-108 403.0
31 TraesCS2A01G478100 chr6D 87.625 299 37 0 3241 3539 31767854 31767556 9.310000e-92 348.0
32 TraesCS2A01G478100 chr6D 81.604 424 73 5 493 912 31754409 31753987 3.350000e-91 346.0
33 TraesCS2A01G478100 chr6D 87.291 299 38 0 3241 3539 23437733 23437435 4.330000e-90 342.0
34 TraesCS2A01G478100 chr6D 80.482 415 72 7 500 911 23440404 23439996 4.390000e-80 309.0
35 TraesCS2A01G478100 chr6D 80.482 415 72 7 500 911 31770521 31770113 4.390000e-80 309.0
36 TraesCS2A01G478100 chr1A 96.813 502 14 2 1 501 275698812 275698312 0.000000e+00 837.0
37 TraesCS2A01G478100 chr1A 75.587 213 39 10 2427 2637 206794139 206794340 4.810000e-15 93.5
38 TraesCS2A01G478100 chr3A 97.160 493 12 2 1 492 203730072 203729581 0.000000e+00 832.0
39 TraesCS2A01G478100 chr3A 96.964 494 13 2 1 493 392646765 392646273 0.000000e+00 828.0
40 TraesCS2A01G478100 chr3A 96.957 493 13 2 1 492 612179790 612179299 0.000000e+00 826.0
41 TraesCS2A01G478100 chr7A 96.787 498 14 2 1 496 348222165 348221668 0.000000e+00 830.0
42 TraesCS2A01G478100 chr7A 96.957 493 14 1 1 492 81334752 81335244 0.000000e+00 826.0
43 TraesCS2A01G478100 chr7A 96.957 493 14 1 1 492 341256503 341256995 0.000000e+00 826.0
44 TraesCS2A01G478100 chr7A 95.882 510 20 1 1 509 417895716 417895207 0.000000e+00 824.0
45 TraesCS2A01G478100 chr7A 94.872 39 2 0 2576 2614 518572017 518571979 1.360000e-05 62.1
46 TraesCS2A01G478100 chrUn 82.796 372 59 4 2775 3145 100622395 100622762 1.210000e-85 327.0
47 TraesCS2A01G478100 chr1D 79.845 129 24 2 2510 2637 154020763 154020636 4.810000e-15 93.5
48 TraesCS2A01G478100 chr1B 79.845 129 24 2 2510 2637 223799626 223799499 4.810000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G478100 chr2A 717136853 717141372 4519 False 8347.000000 8347 100.000000 1 4520 1 chr2A.!!$F2 4519
1 TraesCS2A01G478100 chr2D 579386539 579390546 4007 False 6384.000000 6384 95.368000 493 4520 1 chr2D.!!$F1 4027
2 TraesCS2A01G478100 chr2B 696670305 696674300 3995 False 2979.500000 5334 93.557000 493 4520 2 chr2B.!!$F1 4027
3 TraesCS2A01G478100 chr6A 36105966 36108532 2566 True 964.500000 1585 81.626000 937 3540 2 chr6A.!!$R1 2603
4 TraesCS2A01G478100 chr6A 36250257 36252831 2574 True 567.666667 959 81.439667 500 3146 3 chr6A.!!$R2 2646
5 TraesCS2A01G478100 chr6B 66968518 66970649 2131 True 1463.000000 1463 79.436000 937 3101 1 chr6B.!!$R1 2164
6 TraesCS2A01G478100 chr6B 67320579 67323157 2578 True 925.500000 1544 82.717500 937 3539 2 chr6B.!!$R6 2602
7 TraesCS2A01G478100 chr6B 68779468 68782816 3348 True 763.500000 948 80.965000 930 3531 2 chr6B.!!$R8 2601
8 TraesCS2A01G478100 chr6B 67128057 67131049 2992 True 725.000000 1544 82.129333 493 3539 3 chr6B.!!$R5 3046
9 TraesCS2A01G478100 chr6B 67227555 67228739 1184 True 691.000000 691 77.814000 1927 3122 1 chr6B.!!$R2 1195
10 TraesCS2A01G478100 chr6B 68748946 68752234 3288 False 609.666667 968 80.381333 500 3531 3 chr6B.!!$F1 3031
11 TraesCS2A01G478100 chr6B 66988840 66990440 1600 True 540.500000 750 82.202000 1927 3540 2 chr6B.!!$R4 1613
12 TraesCS2A01G478100 chr6B 67408654 67409797 1143 True 409.000000 420 82.791000 1927 3132 2 chr6B.!!$R7 1205
13 TraesCS2A01G478100 chr6D 31751803 31754409 2606 True 663.000000 1016 81.271333 493 3130 3 chr6D.!!$R2 2637
14 TraesCS2A01G478100 chr6D 31767556 31770521 2965 True 353.333333 403 83.478333 500 3539 3 chr6D.!!$R3 3039
15 TraesCS2A01G478100 chr6D 23437435 23440404 2969 True 351.333333 403 83.367000 500 3539 3 chr6D.!!$R1 3039
16 TraesCS2A01G478100 chr1A 275698312 275698812 500 True 837.000000 837 96.813000 1 501 1 chr1A.!!$R1 500
17 TraesCS2A01G478100 chr7A 417895207 417895716 509 True 824.000000 824 95.882000 1 509 1 chr7A.!!$R2 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 928 0.263765 AGTACCTCCCTTATCCCGCA 59.736 55.0 0.00 0.00 0.00 5.69 F
980 990 6.311735 TGTCACTATGTATGACCTATGCCTA 58.688 40.0 2.87 0.00 44.91 3.93 F
2181 3109 2.493278 CACATTTTGACAGGTGGGATCC 59.507 50.0 1.92 1.92 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2182 3110 0.594602 GTGAATCAACAGCAGCAGCA 59.405 50.0 3.17 0.0 45.49 4.41 R
2183 3111 0.879765 AGTGAATCAACAGCAGCAGC 59.120 50.0 0.00 0.0 42.56 5.25 R
3927 4925 0.400213 CCAAGTACCCCACTCTTGCA 59.600 55.0 0.00 0.0 36.04 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 6.551601 TGAAGTAGGGAAAAATTGGCTTTACA 59.448 34.615 0.00 0.00 0.00 2.41
121 122 7.095481 CCAGCCAAATATGCATATAGTATAGCG 60.095 40.741 19.39 11.77 0.00 4.26
218 219 7.871853 ACGTTAATGTTGCAGACTTTTTAGAT 58.128 30.769 0.00 0.00 0.00 1.98
232 233 8.532819 AGACTTTTTAGATGACGATTAAGGAGT 58.467 33.333 0.00 0.00 0.00 3.85
263 265 4.948004 TCGTGGTTCTATACTCAGTGATGT 59.052 41.667 0.00 0.00 0.00 3.06
304 306 2.572104 ACTTATCTTCCAAGCCTTCCGT 59.428 45.455 0.00 0.00 0.00 4.69
349 352 9.788960 GCCTTAAGCCATATTATTGTAATAAGC 57.211 33.333 0.00 2.05 33.06 3.09
416 419 6.776744 TCTGCTATAAATCCTCCGAGTACTA 58.223 40.000 0.00 0.00 0.00 1.82
776 779 8.621532 AGTGTGTCATGTAAGATAAACACAAT 57.378 30.769 12.61 9.82 45.84 2.71
792 795 5.059404 ACACAATAATTTGGGAAGCTTCG 57.941 39.130 19.91 4.88 38.63 3.79
848 852 9.677567 TGTGATAACTTTGCTGTAAAAGAAATC 57.322 29.630 10.58 11.41 39.12 2.17
919 928 0.263765 AGTACCTCCCTTATCCCGCA 59.736 55.000 0.00 0.00 0.00 5.69
980 990 6.311735 TGTCACTATGTATGACCTATGCCTA 58.688 40.000 2.87 0.00 44.91 3.93
2181 3109 2.493278 CACATTTTGACAGGTGGGATCC 59.507 50.000 1.92 1.92 0.00 3.36
2182 3110 2.379907 ACATTTTGACAGGTGGGATCCT 59.620 45.455 12.58 0.00 38.51 3.24
2303 3234 4.878968 TGGACTGAACCCTATCACTCATA 58.121 43.478 0.00 0.00 0.00 2.15
2632 3576 3.989817 GGCAAGCCAAAAACTACTGATTG 59.010 43.478 6.14 0.00 35.81 2.67
3122 4103 4.877823 CACATAAGACTGCAGGATTAGCAA 59.122 41.667 19.93 0.00 42.17 3.91
3132 4113 6.263168 ACTGCAGGATTAGCAATACCAATAAC 59.737 38.462 19.93 0.00 42.17 1.89
3133 4114 6.364701 TGCAGGATTAGCAATACCAATAACT 58.635 36.000 0.00 0.00 39.39 2.24
3134 4115 6.262944 TGCAGGATTAGCAATACCAATAACTG 59.737 38.462 0.00 0.00 39.39 3.16
3135 4116 6.263168 GCAGGATTAGCAATACCAATAACTGT 59.737 38.462 0.00 0.00 0.00 3.55
3136 4117 7.444183 GCAGGATTAGCAATACCAATAACTGTA 59.556 37.037 0.00 0.00 0.00 2.74
3137 4118 8.774586 CAGGATTAGCAATACCAATAACTGTAC 58.225 37.037 0.00 0.00 0.00 2.90
3138 4119 8.491134 AGGATTAGCAATACCAATAACTGTACA 58.509 33.333 0.00 0.00 0.00 2.90
3139 4120 9.284968 GGATTAGCAATACCAATAACTGTACAT 57.715 33.333 0.00 0.00 0.00 2.29
3141 4122 9.845740 ATTAGCAATACCAATAACTGTACATGA 57.154 29.630 0.00 0.00 0.00 3.07
3142 4123 9.674068 TTAGCAATACCAATAACTGTACATGAA 57.326 29.630 0.00 0.00 0.00 2.57
3143 4124 8.752005 AGCAATACCAATAACTGTACATGAAT 57.248 30.769 0.00 0.00 0.00 2.57
3144 4125 9.189156 AGCAATACCAATAACTGTACATGAATT 57.811 29.630 0.00 0.00 0.00 2.17
3145 4126 9.450807 GCAATACCAATAACTGTACATGAATTC 57.549 33.333 0.00 0.00 0.00 2.17
3146 4127 9.950680 CAATACCAATAACTGTACATGAATTCC 57.049 33.333 0.00 0.00 0.00 3.01
3147 4128 9.693739 AATACCAATAACTGTACATGAATTCCA 57.306 29.630 0.00 0.00 0.00 3.53
3148 4129 7.391148 ACCAATAACTGTACATGAATTCCAC 57.609 36.000 0.00 0.00 0.00 4.02
3149 4130 6.093495 ACCAATAACTGTACATGAATTCCACG 59.907 38.462 0.00 0.00 0.00 4.94
3150 4131 6.093495 CCAATAACTGTACATGAATTCCACGT 59.907 38.462 0.00 0.00 0.00 4.49
3151 4132 7.279090 CCAATAACTGTACATGAATTCCACGTA 59.721 37.037 0.00 0.00 0.00 3.57
3152 4133 8.661257 CAATAACTGTACATGAATTCCACGTAA 58.339 33.333 0.00 0.00 0.00 3.18
3153 4134 8.780846 ATAACTGTACATGAATTCCACGTAAA 57.219 30.769 0.00 0.00 0.00 2.01
3154 4135 7.499321 AACTGTACATGAATTCCACGTAAAA 57.501 32.000 0.00 0.00 0.00 1.52
3155 4136 7.499321 ACTGTACATGAATTCCACGTAAAAA 57.501 32.000 0.00 0.00 0.00 1.94
3231 4213 4.127566 ACATTGACCAAATTAGGCATGC 57.872 40.909 9.90 9.90 0.00 4.06
3260 4258 2.223735 CCATGCAGGATGAATCACAAGC 60.224 50.000 0.00 0.00 39.69 4.01
3278 4276 1.227089 CAGGGCTCGACGGATCTTG 60.227 63.158 0.00 0.00 0.00 3.02
3345 4343 1.937899 CACATGCTGAAGATGATCGCA 59.062 47.619 0.00 0.00 34.89 5.10
3390 4388 2.489722 GGAATGCTTCTCTGGGACAAAC 59.510 50.000 0.00 0.00 38.70 2.93
3415 4413 4.258702 ACACTATCGCATACCTTCATCC 57.741 45.455 0.00 0.00 0.00 3.51
3590 4588 2.369860 TGCATTGCAATGGGGTTTTGTA 59.630 40.909 34.23 9.99 34.76 2.41
3655 4653 3.996150 AACATGAAACTGAACAGCCTG 57.004 42.857 0.00 0.00 0.00 4.85
3678 4676 3.442977 ACTGTGGAACTAGGCTACTAACG 59.557 47.826 0.00 0.00 38.04 3.18
3680 4678 3.828451 TGTGGAACTAGGCTACTAACGTT 59.172 43.478 5.88 5.88 38.04 3.99
3744 4742 5.770663 ACGCTACTGGATCTATGATAGTTGT 59.229 40.000 0.00 0.00 0.00 3.32
3751 4749 5.157781 GGATCTATGATAGTTGTGTCGAGC 58.842 45.833 0.00 0.00 0.00 5.03
3758 4756 0.666577 AGTTGTGTCGAGCGGCTTAC 60.667 55.000 2.97 6.71 0.00 2.34
3798 4796 5.303845 TCATCTCATCCAATCTCGAGAACAT 59.696 40.000 20.91 6.06 37.99 2.71
3823 4821 0.103026 CGCCTCAATCGTCCTGATGA 59.897 55.000 0.00 0.00 37.39 2.92
3894 4892 1.674221 GCTTCAGAGTGAACGGCAGAT 60.674 52.381 0.00 0.00 32.21 2.90
3927 4925 4.143333 ACGTCCCGCGCAATAGCT 62.143 61.111 8.75 0.00 46.11 3.32
4113 5111 2.719354 GAAACAACGGCGCCACTT 59.281 55.556 28.98 14.29 0.00 3.16
4265 5263 5.259632 TCTAGGGTCTAGAACAACAGGTAC 58.740 45.833 10.60 0.00 0.00 3.34
4298 5296 3.510360 ACGTATGAGTTCTGCCAGTACTT 59.490 43.478 5.42 0.00 0.00 2.24
4305 5303 2.433868 TCTGCCAGTACTTGTCGAAC 57.566 50.000 0.00 0.00 0.00 3.95
4425 5424 1.668151 GTTTGCCGTCGGAGAGCTT 60.668 57.895 17.49 0.00 36.95 3.74
4437 5436 1.387539 GAGAGCTTGGGCCAGAAATC 58.612 55.000 6.23 4.13 39.73 2.17
4450 5449 2.096496 CCAGAAATCACTTCGATGGCAC 59.904 50.000 3.12 0.00 39.22 5.01
4451 5450 2.743664 CAGAAATCACTTCGATGGCACA 59.256 45.455 3.12 0.00 40.65 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.686484 AGCCAATTTTTCCCTACTTCAAAT 57.314 33.333 0.00 0.00 0.00 2.32
67 68 7.255486 GGAAAGCTCTATGGTTACTGTTTTTGT 60.255 37.037 0.00 0.00 35.02 2.83
121 122 7.013655 ACACATAGAGAATAATGGAATGCAACC 59.986 37.037 6.38 6.38 0.00 3.77
218 219 5.865552 CGACCTAAAAACTCCTTAATCGTCA 59.134 40.000 0.00 0.00 0.00 4.35
232 233 7.039504 ACTGAGTATAGAACCACGACCTAAAAA 60.040 37.037 0.00 0.00 0.00 1.94
263 265 1.967779 TGAGTCCATCAACTCCAACGA 59.032 47.619 0.00 0.00 44.17 3.85
304 306 5.864418 AGGCCATCTAGTAACGATAACAA 57.136 39.130 5.01 0.00 0.00 2.83
776 779 3.055963 TCGTACCGAAGCTTCCCAAATTA 60.056 43.478 20.62 0.73 31.06 1.40
847 851 9.832445 ATTTATTTTAGACTTCGGCTATGAAGA 57.168 29.630 16.91 0.00 46.64 2.87
850 854 9.832445 AGAATTTATTTTAGACTTCGGCTATGA 57.168 29.630 0.00 0.00 0.00 2.15
980 990 1.850345 TGTTGTGGAGAAGGGGTCTTT 59.150 47.619 0.00 0.00 36.41 2.52
1948 2841 8.948631 AAGATCTTTCTCATAAAGACGCAATA 57.051 30.769 0.88 0.00 38.88 1.90
2130 3055 9.856488 TCTGTGTGTGAAACTTCTATAAGATAC 57.144 33.333 0.00 0.00 38.04 2.24
2181 3109 0.879090 TGAATCAACAGCAGCAGCAG 59.121 50.000 3.17 0.00 45.49 4.24
2182 3110 0.594602 GTGAATCAACAGCAGCAGCA 59.405 50.000 3.17 0.00 45.49 4.41
2183 3111 0.879765 AGTGAATCAACAGCAGCAGC 59.120 50.000 0.00 0.00 42.56 5.25
2303 3234 5.114780 CAGTAGACATACAGCTTGCTTGAT 58.885 41.667 0.00 0.00 34.07 2.57
2632 3576 5.500645 AAATGGACTTTAGCCGCTAATTC 57.499 39.130 13.58 12.31 0.00 2.17
2987 3968 1.338674 CGGTCATTGTTGCCCTCTGTA 60.339 52.381 0.00 0.00 0.00 2.74
3122 4103 9.120538 GTGGAATTCATGTACAGTTATTGGTAT 57.879 33.333 7.93 0.00 0.00 2.73
3191 4173 0.959867 TTGATGTGGATGCACACCCG 60.960 55.000 23.18 0.00 40.62 5.28
3260 4258 1.227089 CAAGATCCGTCGAGCCCTG 60.227 63.158 0.00 0.00 0.00 4.45
3278 4276 2.037251 TCTCTGTGGTACAACTCCTTGC 59.963 50.000 1.23 0.00 44.16 4.01
3334 4332 2.357009 GCCATTCACTTGCGATCATCTT 59.643 45.455 0.00 0.00 0.00 2.40
3345 4343 3.726557 TTCAGATCCTGCCATTCACTT 57.273 42.857 0.00 0.00 0.00 3.16
3390 4388 4.682787 TGAAGGTATGCGATAGTGTTGAG 58.317 43.478 0.00 0.00 39.35 3.02
3415 4413 1.569493 CAAAGTTGAGTGACGCCCG 59.431 57.895 0.00 0.00 0.00 6.13
3568 4566 1.807742 CAAAACCCCATTGCAATGCAG 59.192 47.619 30.15 24.32 40.61 4.41
3624 4622 6.486253 TCAGTTTCATGTTTGACTAGATGC 57.514 37.500 0.00 0.00 0.00 3.91
3655 4653 4.438472 CGTTAGTAGCCTAGTTCCACAGTC 60.438 50.000 0.00 0.00 0.00 3.51
3678 4676 7.860373 TGTAGAACTTTTGCATGTTCATGTAAC 59.140 33.333 21.48 14.25 43.38 2.50
3680 4678 7.503521 TGTAGAACTTTTGCATGTTCATGTA 57.496 32.000 21.48 7.01 43.38 2.29
3744 4742 0.530744 ATTCTGTAAGCCGCTCGACA 59.469 50.000 7.62 7.62 0.00 4.35
3751 4749 0.931005 GGCGAAGATTCTGTAAGCCG 59.069 55.000 6.31 0.00 33.43 5.52
3758 4756 4.573607 TGAGATGAAATGGCGAAGATTCTG 59.426 41.667 0.00 0.00 0.00 3.02
3798 4796 1.063649 GACGATTGAGGCGCTCGTA 59.936 57.895 19.64 3.43 44.89 3.43
3927 4925 0.400213 CCAAGTACCCCACTCTTGCA 59.600 55.000 0.00 0.00 36.04 4.08
3933 4931 1.140134 ATGCCACCAAGTACCCCACT 61.140 55.000 0.00 0.00 40.05 4.00
4121 5119 8.258007 TCTTCAGTGAATACTACAAACCTATGG 58.742 37.037 5.91 0.00 34.74 2.74
4265 5263 1.336517 ACTCATACGTGTGGTTGTCGG 60.337 52.381 12.66 0.00 0.00 4.79
4305 5303 3.502455 ATGGTGATGCAGCACGCG 61.502 61.111 27.18 3.53 44.62 6.01
4425 5424 0.690192 TCGAAGTGATTTCTGGCCCA 59.310 50.000 0.00 0.00 33.44 5.36
4437 5436 3.845775 CGTTTTATTGTGCCATCGAAGTG 59.154 43.478 0.00 0.00 0.00 3.16
4450 5449 8.060020 TGCAAGATTTTGAGAACGTTTTATTG 57.940 30.769 0.46 0.00 36.36 1.90
4451 5450 8.641499 TTGCAAGATTTTGAGAACGTTTTATT 57.359 26.923 0.46 0.00 36.36 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.