Multiple sequence alignment - TraesCS2A01G477900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G477900 chr2A 100.000 8338 0 0 1 8338 716908402 716900065 0.000000e+00 15398.0
1 TraesCS2A01G477900 chr2D 95.796 3687 110 22 3251 6909 579195251 579191582 0.000000e+00 5908.0
2 TraesCS2A01G477900 chr2D 92.330 2047 103 22 748 2756 579197287 579195257 0.000000e+00 2861.0
3 TraesCS2A01G477900 chr2D 91.811 635 26 13 6987 7610 579191439 579190820 0.000000e+00 861.0
4 TraesCS2A01G477900 chr2D 89.721 681 31 10 7676 8338 579190820 579190161 0.000000e+00 833.0
5 TraesCS2A01G477900 chr2B 94.671 3453 111 36 3961 7361 696359660 696356229 0.000000e+00 5289.0
6 TraesCS2A01G477900 chr2B 93.980 1927 94 13 2034 3944 696361652 696359732 0.000000e+00 2896.0
7 TraesCS2A01G477900 chr2B 91.371 1298 70 18 753 2035 696363004 696361734 0.000000e+00 1738.0
8 TraesCS2A01G477900 chr2B 98.237 624 9 2 1 623 89528122 89528744 0.000000e+00 1090.0
9 TraesCS2A01G477900 chr2B 98.055 617 11 1 1 617 250057790 250057175 0.000000e+00 1072.0
10 TraesCS2A01G477900 chr2B 88.500 600 38 10 7359 7927 696356099 696355500 0.000000e+00 697.0
11 TraesCS2A01G477900 chr2B 91.603 262 22 0 8077 8338 696355500 696355239 6.150000e-96 363.0
12 TraesCS2A01G477900 chr2B 92.982 57 3 1 4397 4453 459477451 459477506 1.930000e-11 82.4
13 TraesCS2A01G477900 chr1B 98.068 621 9 2 1 618 649979376 649978756 0.000000e+00 1077.0
14 TraesCS2A01G477900 chr1B 81.818 121 20 1 3061 3179 110971095 110970975 5.330000e-17 100.0
15 TraesCS2A01G477900 chr3A 98.366 612 9 1 1 612 344148239 344148849 0.000000e+00 1074.0
16 TraesCS2A01G477900 chr3A 98.363 611 10 0 1 611 633902664 633902054 0.000000e+00 1074.0
17 TraesCS2A01G477900 chr3A 76.142 197 38 7 3032 3222 700577171 700577364 2.480000e-15 95.3
18 TraesCS2A01G477900 chr7B 98.197 610 11 0 1 610 220147566 220146957 0.000000e+00 1066.0
19 TraesCS2A01G477900 chr7B 97.424 621 12 4 1 619 132144141 132144759 0.000000e+00 1055.0
20 TraesCS2A01G477900 chr5A 98.036 611 12 0 1 611 338225506 338226116 0.000000e+00 1062.0
21 TraesCS2A01G477900 chr5A 84.302 172 23 3 3061 3231 125083355 125083187 1.860000e-36 165.0
22 TraesCS2A01G477900 chr5A 82.828 99 15 2 3231 3328 623663407 623663310 4.150000e-13 87.9
23 TraesCS2A01G477900 chr5A 76.647 167 29 9 3061 3221 454724432 454724594 5.360000e-12 84.2
24 TraesCS2A01G477900 chr5A 82.143 84 10 4 3061 3141 69533969 69534050 5.400000e-07 67.6
25 TraesCS2A01G477900 chr3B 97.419 620 15 1 1 620 375225548 375226166 0.000000e+00 1055.0
26 TraesCS2A01G477900 chr4A 98.529 136 1 1 611 745 140298271 140298136 1.080000e-58 239.0
27 TraesCS2A01G477900 chr4A 78.235 170 26 8 3059 3222 28565010 28565174 1.920000e-16 99.0
28 TraesCS2A01G477900 chr7A 97.037 135 4 0 611 745 540001943 540001809 2.340000e-55 228.0
29 TraesCS2A01G477900 chr7A 96.296 54 1 1 4403 4456 215930419 215930471 4.150000e-13 87.9
30 TraesCS2A01G477900 chr7A 88.235 68 5 3 4391 4455 46514486 46514553 2.500000e-10 78.7
31 TraesCS2A01G477900 chr6D 94.074 135 8 0 611 745 12131659 12131793 1.100000e-48 206.0
32 TraesCS2A01G477900 chr6D 93.333 135 8 1 611 745 454662855 454662722 1.840000e-46 198.0
33 TraesCS2A01G477900 chr6D 92.593 135 10 0 611 745 335061849 335061983 2.370000e-45 195.0
34 TraesCS2A01G477900 chr6D 94.309 123 7 0 623 745 344059589 344059467 1.100000e-43 189.0
35 TraesCS2A01G477900 chr6B 90.226 133 10 1 611 743 690342771 690342900 4.000000e-38 171.0
36 TraesCS2A01G477900 chr6B 96.429 56 1 1 4402 4456 658624891 658624836 3.200000e-14 91.6
37 TraesCS2A01G477900 chr6B 81.319 91 15 2 3256 3345 293512422 293512333 1.160000e-08 73.1
38 TraesCS2A01G477900 chr1D 80.814 172 27 5 3061 3231 262333562 262333728 6.790000e-26 130.0
39 TraesCS2A01G477900 chr1A 93.548 62 3 1 4399 4460 454493547 454493607 3.200000e-14 91.6
40 TraesCS2A01G477900 chr7D 94.643 56 2 1 4405 4460 616168671 616168617 1.490000e-12 86.1
41 TraesCS2A01G477900 chr4B 94.643 56 2 1 4401 4456 620111297 620111351 1.490000e-12 86.1
42 TraesCS2A01G477900 chrUn 79.464 112 17 5 3033 3141 324345743 324345635 3.230000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G477900 chr2A 716900065 716908402 8337 True 15398.00 15398 100.0000 1 8338 1 chr2A.!!$R1 8337
1 TraesCS2A01G477900 chr2D 579190161 579197287 7126 True 2615.75 5908 92.4145 748 8338 4 chr2D.!!$R1 7590
2 TraesCS2A01G477900 chr2B 696355239 696363004 7765 True 2196.60 5289 92.0250 753 8338 5 chr2B.!!$R2 7585
3 TraesCS2A01G477900 chr2B 89528122 89528744 622 False 1090.00 1090 98.2370 1 623 1 chr2B.!!$F1 622
4 TraesCS2A01G477900 chr2B 250057175 250057790 615 True 1072.00 1072 98.0550 1 617 1 chr2B.!!$R1 616
5 TraesCS2A01G477900 chr1B 649978756 649979376 620 True 1077.00 1077 98.0680 1 618 1 chr1B.!!$R2 617
6 TraesCS2A01G477900 chr3A 344148239 344148849 610 False 1074.00 1074 98.3660 1 612 1 chr3A.!!$F1 611
7 TraesCS2A01G477900 chr3A 633902054 633902664 610 True 1074.00 1074 98.3630 1 611 1 chr3A.!!$R1 610
8 TraesCS2A01G477900 chr7B 220146957 220147566 609 True 1066.00 1066 98.1970 1 610 1 chr7B.!!$R1 609
9 TraesCS2A01G477900 chr7B 132144141 132144759 618 False 1055.00 1055 97.4240 1 619 1 chr7B.!!$F1 618
10 TraesCS2A01G477900 chr5A 338225506 338226116 610 False 1062.00 1062 98.0360 1 611 1 chr5A.!!$F2 610
11 TraesCS2A01G477900 chr3B 375225548 375226166 618 False 1055.00 1055 97.4190 1 620 1 chr3B.!!$F1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 646 0.030235 GCCCAAACAACGGAAGACAC 59.970 55.000 0.00 0.00 0.00 3.67 F
680 685 0.102120 CTGGACGCTCTCCTTAGCAG 59.898 60.000 0.00 0.00 42.91 4.24 F
695 700 0.106708 AGCAGGCTGAAAACGAGACA 59.893 50.000 20.86 0.00 0.00 3.41 F
1271 1293 0.110486 ATTTCCGCCTGGTGTGACTT 59.890 50.000 6.49 0.00 36.30 3.01 F
1818 1842 0.250295 CAACCGAGCAGGGAAAGACA 60.250 55.000 0.00 0.00 46.96 3.41 F
2524 2651 0.392336 CAGGGCTCTAGAGTGCATCC 59.608 60.000 20.75 12.46 36.36 3.51 F
2554 2681 1.140312 TTCCTGGCCTTGTTCTGTCT 58.860 50.000 3.32 0.00 0.00 3.41 F
2736 2863 1.262151 GTGCTTGCTTTTGCCATTGTG 59.738 47.619 0.00 0.00 46.87 3.33 F
3048 3177 2.038387 AAATGTAGGGCTACGCTTGG 57.962 50.000 0.00 0.00 38.85 3.61 F
3142 3272 4.134379 TGTGTTTGGCATCAACAAATGT 57.866 36.364 6.33 0.00 39.68 2.71 F
5072 5282 2.285083 ACTAGTCAAACGTGCAAGCAA 58.715 42.857 0.00 0.00 0.00 3.91 F
6164 6391 0.247460 CTCGACTTGTGCTGGATGGA 59.753 55.000 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2509 2636 0.392336 CAGGGGATGCACTCTAGAGC 59.608 60.000 19.97 8.36 0.00 4.09 R
2524 2651 1.005924 AGGCCAGGAAATTGTACAGGG 59.994 52.381 5.01 0.00 0.00 4.45 R
2603 2730 4.096984 ACGCATGATCAAATTTTCTCTCCC 59.903 41.667 0.00 0.00 0.00 4.30 R
2884 3013 3.620488 TGCACCAATTCCTTATGAGACC 58.380 45.455 0.00 0.00 0.00 3.85 R
3611 3745 1.202348 GCAGCCCCTGTTCACAAATAC 59.798 52.381 0.00 0.00 33.43 1.89 R
4410 4609 1.063912 CAAGCTTTGCATATTCGCGGA 59.936 47.619 6.13 0.00 33.35 5.54 R
4487 4686 5.862845 TCTCTCTTTTCTTCTGCACATCTT 58.137 37.500 0.00 0.00 0.00 2.40 R
4568 4767 5.989477 AGCAACAGGAGTACAATAGCAATA 58.011 37.500 0.00 0.00 0.00 1.90 R
4773 4981 8.621286 CATGTTACACTAAAGGAAACAGAAACT 58.379 33.333 0.00 0.00 33.90 2.66 R
5106 5316 1.625315 CTGATCACTGGACCAAGGTCA 59.375 52.381 20.03 8.75 46.20 4.02 R
6940 7258 0.250684 TGCTGAATTTCAGGCGACCA 60.251 50.000 24.09 12.49 44.43 4.02 R
7926 8459 0.106708 GGTGTCACTCTGCTCCACAA 59.893 55.000 2.35 0.00 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
223 227 5.049954 GCATGTCTACGGTGTACAAGAAAAA 60.050 40.000 0.00 0.00 0.00 1.94
468 472 5.072600 TGGTCAACTCCCTTTAGTGTACAAT 59.927 40.000 0.00 0.00 0.00 2.71
634 639 2.017138 AAAAACAGCCCAAACAACGG 57.983 45.000 0.00 0.00 0.00 4.44
635 640 1.187087 AAAACAGCCCAAACAACGGA 58.813 45.000 0.00 0.00 0.00 4.69
636 641 1.187087 AAACAGCCCAAACAACGGAA 58.813 45.000 0.00 0.00 0.00 4.30
637 642 0.744281 AACAGCCCAAACAACGGAAG 59.256 50.000 0.00 0.00 0.00 3.46
638 643 0.106918 ACAGCCCAAACAACGGAAGA 60.107 50.000 0.00 0.00 0.00 2.87
639 644 0.310854 CAGCCCAAACAACGGAAGAC 59.689 55.000 0.00 0.00 0.00 3.01
640 645 0.106918 AGCCCAAACAACGGAAGACA 60.107 50.000 0.00 0.00 0.00 3.41
641 646 0.030235 GCCCAAACAACGGAAGACAC 59.970 55.000 0.00 0.00 0.00 3.67
642 647 1.384525 CCCAAACAACGGAAGACACA 58.615 50.000 0.00 0.00 0.00 3.72
643 648 1.333619 CCCAAACAACGGAAGACACAG 59.666 52.381 0.00 0.00 0.00 3.66
644 649 2.285083 CCAAACAACGGAAGACACAGA 58.715 47.619 0.00 0.00 0.00 3.41
645 650 2.031683 CCAAACAACGGAAGACACAGAC 59.968 50.000 0.00 0.00 0.00 3.51
646 651 2.675844 CAAACAACGGAAGACACAGACA 59.324 45.455 0.00 0.00 0.00 3.41
647 652 2.684001 ACAACGGAAGACACAGACAA 57.316 45.000 0.00 0.00 0.00 3.18
648 653 2.550978 ACAACGGAAGACACAGACAAG 58.449 47.619 0.00 0.00 0.00 3.16
649 654 1.261619 CAACGGAAGACACAGACAAGC 59.738 52.381 0.00 0.00 0.00 4.01
650 655 0.464036 ACGGAAGACACAGACAAGCA 59.536 50.000 0.00 0.00 0.00 3.91
651 656 1.143305 CGGAAGACACAGACAAGCAG 58.857 55.000 0.00 0.00 0.00 4.24
652 657 1.269778 CGGAAGACACAGACAAGCAGA 60.270 52.381 0.00 0.00 0.00 4.26
653 658 2.411904 GGAAGACACAGACAAGCAGAG 58.588 52.381 0.00 0.00 0.00 3.35
654 659 2.036475 GGAAGACACAGACAAGCAGAGA 59.964 50.000 0.00 0.00 0.00 3.10
655 660 3.493350 GGAAGACACAGACAAGCAGAGAA 60.493 47.826 0.00 0.00 0.00 2.87
656 661 4.314121 GAAGACACAGACAAGCAGAGAAT 58.686 43.478 0.00 0.00 0.00 2.40
657 662 3.924144 AGACACAGACAAGCAGAGAATC 58.076 45.455 0.00 0.00 0.00 2.52
658 663 2.665537 GACACAGACAAGCAGAGAATCG 59.334 50.000 0.00 0.00 42.67 3.34
659 664 1.998315 CACAGACAAGCAGAGAATCGG 59.002 52.381 0.00 0.00 42.67 4.18
660 665 1.066573 ACAGACAAGCAGAGAATCGGG 60.067 52.381 0.00 0.00 42.67 5.14
661 666 0.107945 AGACAAGCAGAGAATCGGGC 60.108 55.000 0.00 0.00 42.67 6.13
664 669 2.906458 AGCAGAGAATCGGGCTGG 59.094 61.111 0.00 0.00 46.20 4.85
665 670 1.687146 AGCAGAGAATCGGGCTGGA 60.687 57.895 0.00 0.00 46.20 3.86
666 671 1.522580 GCAGAGAATCGGGCTGGAC 60.523 63.158 0.00 0.00 42.67 4.02
667 672 1.227089 CAGAGAATCGGGCTGGACG 60.227 63.158 0.00 0.00 42.67 4.79
668 673 2.586357 GAGAATCGGGCTGGACGC 60.586 66.667 0.00 0.00 38.13 5.19
669 674 3.077556 AGAATCGGGCTGGACGCT 61.078 61.111 0.00 0.00 39.13 5.07
670 675 2.586357 GAATCGGGCTGGACGCTC 60.586 66.667 0.00 0.00 39.13 5.03
671 676 3.077556 AATCGGGCTGGACGCTCT 61.078 61.111 0.00 0.00 36.79 4.09
672 677 2.962697 GAATCGGGCTGGACGCTCTC 62.963 65.000 0.00 0.00 36.79 3.20
675 680 3.394836 GGGCTGGACGCTCTCCTT 61.395 66.667 0.00 0.00 40.26 3.36
676 681 2.058595 GGGCTGGACGCTCTCCTTA 61.059 63.158 0.00 0.00 40.26 2.69
677 682 1.439644 GGCTGGACGCTCTCCTTAG 59.560 63.158 0.00 0.00 40.26 2.18
678 683 1.227118 GCTGGACGCTCTCCTTAGC 60.227 63.158 0.00 0.00 40.26 3.09
679 684 1.949847 GCTGGACGCTCTCCTTAGCA 61.950 60.000 0.00 0.00 42.91 3.49
680 685 0.102120 CTGGACGCTCTCCTTAGCAG 59.898 60.000 0.00 0.00 42.91 4.24
681 686 1.323271 TGGACGCTCTCCTTAGCAGG 61.323 60.000 0.00 0.00 42.91 4.85
682 687 1.227118 GACGCTCTCCTTAGCAGGC 60.227 63.158 0.00 0.00 42.91 4.85
683 688 1.671901 GACGCTCTCCTTAGCAGGCT 61.672 60.000 0.00 0.00 42.91 4.58
684 689 1.227205 CGCTCTCCTTAGCAGGCTG 60.227 63.158 10.94 10.94 42.91 4.85
685 690 1.670949 CGCTCTCCTTAGCAGGCTGA 61.671 60.000 20.86 0.00 42.91 4.26
686 691 0.539051 GCTCTCCTTAGCAGGCTGAA 59.461 55.000 20.86 3.26 42.30 3.02
687 692 1.065854 GCTCTCCTTAGCAGGCTGAAA 60.066 52.381 20.86 10.54 42.30 2.69
688 693 2.616510 GCTCTCCTTAGCAGGCTGAAAA 60.617 50.000 20.86 10.16 42.30 2.29
689 694 3.006247 CTCTCCTTAGCAGGCTGAAAAC 58.994 50.000 20.86 0.00 40.58 2.43
690 695 1.734465 CTCCTTAGCAGGCTGAAAACG 59.266 52.381 20.86 5.41 40.58 3.60
691 696 1.346395 TCCTTAGCAGGCTGAAAACGA 59.654 47.619 20.86 7.65 40.58 3.85
692 697 1.734465 CCTTAGCAGGCTGAAAACGAG 59.266 52.381 20.86 6.26 31.53 4.18
693 698 2.612972 CCTTAGCAGGCTGAAAACGAGA 60.613 50.000 20.86 0.00 31.53 4.04
694 699 2.080286 TAGCAGGCTGAAAACGAGAC 57.920 50.000 20.86 0.00 0.00 3.36
695 700 0.106708 AGCAGGCTGAAAACGAGACA 59.893 50.000 20.86 0.00 0.00 3.41
696 701 0.514691 GCAGGCTGAAAACGAGACAG 59.485 55.000 20.86 0.00 35.14 3.51
701 706 2.670401 CTGAAAACGAGACAGCCAAC 57.330 50.000 0.00 0.00 0.00 3.77
702 707 2.213499 CTGAAAACGAGACAGCCAACT 58.787 47.619 0.00 0.00 0.00 3.16
703 708 2.210116 TGAAAACGAGACAGCCAACTC 58.790 47.619 0.00 0.00 0.00 3.01
704 709 2.158957 TGAAAACGAGACAGCCAACTCT 60.159 45.455 0.00 0.00 0.00 3.24
705 710 2.156343 AAACGAGACAGCCAACTCTC 57.844 50.000 0.00 0.00 0.00 3.20
706 711 0.318762 AACGAGACAGCCAACTCTCC 59.681 55.000 0.00 0.00 30.80 3.71
707 712 0.827925 ACGAGACAGCCAACTCTCCA 60.828 55.000 0.00 0.00 30.80 3.86
708 713 0.318441 CGAGACAGCCAACTCTCCAA 59.682 55.000 0.00 0.00 30.80 3.53
709 714 1.802069 GAGACAGCCAACTCTCCAAC 58.198 55.000 0.00 0.00 0.00 3.77
710 715 1.070758 GAGACAGCCAACTCTCCAACA 59.929 52.381 0.00 0.00 0.00 3.33
711 716 1.202698 AGACAGCCAACTCTCCAACAC 60.203 52.381 0.00 0.00 0.00 3.32
712 717 0.532862 ACAGCCAACTCTCCAACACG 60.533 55.000 0.00 0.00 0.00 4.49
713 718 0.249868 CAGCCAACTCTCCAACACGA 60.250 55.000 0.00 0.00 0.00 4.35
714 719 0.468226 AGCCAACTCTCCAACACGAA 59.532 50.000 0.00 0.00 0.00 3.85
715 720 1.072331 AGCCAACTCTCCAACACGAAT 59.928 47.619 0.00 0.00 0.00 3.34
716 721 1.464997 GCCAACTCTCCAACACGAATC 59.535 52.381 0.00 0.00 0.00 2.52
717 722 2.872038 GCCAACTCTCCAACACGAATCT 60.872 50.000 0.00 0.00 0.00 2.40
718 723 3.403038 CCAACTCTCCAACACGAATCTT 58.597 45.455 0.00 0.00 0.00 2.40
719 724 4.566004 CCAACTCTCCAACACGAATCTTA 58.434 43.478 0.00 0.00 0.00 2.10
720 725 4.994852 CCAACTCTCCAACACGAATCTTAA 59.005 41.667 0.00 0.00 0.00 1.85
721 726 5.468746 CCAACTCTCCAACACGAATCTTAAA 59.531 40.000 0.00 0.00 0.00 1.52
722 727 6.347725 CCAACTCTCCAACACGAATCTTAAAG 60.348 42.308 0.00 0.00 0.00 1.85
723 728 4.691216 ACTCTCCAACACGAATCTTAAAGC 59.309 41.667 0.00 0.00 0.00 3.51
724 729 4.637276 TCTCCAACACGAATCTTAAAGCA 58.363 39.130 0.00 0.00 0.00 3.91
725 730 5.060506 TCTCCAACACGAATCTTAAAGCAA 58.939 37.500 0.00 0.00 0.00 3.91
726 731 5.179368 TCTCCAACACGAATCTTAAAGCAAG 59.821 40.000 0.00 0.00 35.38 4.01
728 733 5.529430 TCCAACACGAATCTTAAAGCAAGAA 59.471 36.000 0.00 0.00 46.29 2.52
729 734 6.038825 TCCAACACGAATCTTAAAGCAAGAAA 59.961 34.615 0.00 0.00 46.29 2.52
730 735 6.863126 CCAACACGAATCTTAAAGCAAGAAAT 59.137 34.615 0.00 0.00 46.29 2.17
731 736 8.020819 CCAACACGAATCTTAAAGCAAGAAATA 58.979 33.333 0.00 0.00 46.29 1.40
732 737 9.393249 CAACACGAATCTTAAAGCAAGAAATAA 57.607 29.630 0.00 0.00 46.29 1.40
734 739 9.774742 ACACGAATCTTAAAGCAAGAAATAATC 57.225 29.630 0.00 0.00 46.29 1.75
735 740 9.773328 CACGAATCTTAAAGCAAGAAATAATCA 57.227 29.630 0.00 0.00 46.29 2.57
741 746 8.342634 TCTTAAAGCAAGAAATAATCATACGGC 58.657 33.333 0.00 0.00 40.40 5.68
742 747 6.699575 AAAGCAAGAAATAATCATACGGCT 57.300 33.333 0.00 0.00 0.00 5.52
743 748 5.679734 AGCAAGAAATAATCATACGGCTG 57.320 39.130 0.00 0.00 0.00 4.85
744 749 5.368145 AGCAAGAAATAATCATACGGCTGA 58.632 37.500 0.00 0.00 0.00 4.26
745 750 6.000219 AGCAAGAAATAATCATACGGCTGAT 59.000 36.000 0.00 0.00 37.47 2.90
746 751 6.488006 AGCAAGAAATAATCATACGGCTGATT 59.512 34.615 15.98 15.98 45.44 2.57
747 752 7.661437 AGCAAGAAATAATCATACGGCTGATTA 59.339 33.333 18.42 18.42 46.60 1.75
880 895 1.125384 CGAATACGACACCAACAACCG 59.875 52.381 0.00 0.00 42.66 4.44
936 955 3.680920 TTCCTCCCTCCCTCCTCGC 62.681 68.421 0.00 0.00 0.00 5.03
1051 1070 4.806339 CGCTCCCCTCCCTCCCTT 62.806 72.222 0.00 0.00 0.00 3.95
1061 1080 2.285442 CCTCCCTTCCTCCCCGTT 60.285 66.667 0.00 0.00 0.00 4.44
1067 1086 1.597461 CTTCCTCCCCGTTCTCCAC 59.403 63.158 0.00 0.00 0.00 4.02
1230 1252 1.077716 CCGGAACCCCCAATCTGTC 60.078 63.158 0.00 0.00 34.14 3.51
1231 1253 1.682849 CGGAACCCCCAATCTGTCA 59.317 57.895 0.00 0.00 34.14 3.58
1246 1268 6.459066 CAATCTGTCATTCCTATCCGTGTAT 58.541 40.000 0.00 0.00 0.00 2.29
1249 1271 3.386402 TGTCATTCCTATCCGTGTATGCA 59.614 43.478 0.00 0.00 0.00 3.96
1271 1293 0.110486 ATTTCCGCCTGGTGTGACTT 59.890 50.000 6.49 0.00 36.30 3.01
1284 1306 1.911269 TGACTTACTGCCGCCTCCA 60.911 57.895 0.00 0.00 0.00 3.86
1417 1439 2.017559 CTCCCAATCGGTCGACCCTC 62.018 65.000 28.52 4.51 0.00 4.30
1474 1497 2.322999 GATGTGACGCGGGCATTTCC 62.323 60.000 12.47 0.00 0.00 3.13
1585 1608 4.335647 CCTGGCTGGCGGAACACT 62.336 66.667 12.17 0.00 0.00 3.55
1717 1740 2.584835 ATTGGTTCCTGCTGCAGTAA 57.415 45.000 26.41 15.98 0.00 2.24
1818 1842 0.250295 CAACCGAGCAGGGAAAGACA 60.250 55.000 0.00 0.00 46.96 3.41
1868 1899 4.630069 CCGTGGTCTAGGTTAGTTTTCATG 59.370 45.833 0.00 0.00 0.00 3.07
1869 1900 5.235516 CGTGGTCTAGGTTAGTTTTCATGT 58.764 41.667 0.00 0.00 0.00 3.21
1872 1903 6.879458 GTGGTCTAGGTTAGTTTTCATGTCAT 59.121 38.462 0.00 0.00 0.00 3.06
1890 1921 4.404073 TGTCATTACACTTGTTTTTGGCCT 59.596 37.500 3.32 0.00 0.00 5.19
1902 1933 1.952193 TTTGGCCTTTTTCTGCTTGC 58.048 45.000 3.32 0.00 0.00 4.01
1903 1934 0.829333 TTGGCCTTTTTCTGCTTGCA 59.171 45.000 3.32 0.00 0.00 4.08
1905 1936 1.417145 TGGCCTTTTTCTGCTTGCATT 59.583 42.857 3.32 0.00 0.00 3.56
1907 1938 1.802365 GCCTTTTTCTGCTTGCATTGG 59.198 47.619 0.00 0.00 0.00 3.16
1908 1939 2.807837 GCCTTTTTCTGCTTGCATTGGT 60.808 45.455 0.00 0.00 0.00 3.67
1955 1986 4.092237 CCGCAATCGTGTTAGTTGTTGATA 59.908 41.667 0.00 0.00 0.00 2.15
1965 1996 1.877443 AGTTGTTGATACACGGGCAAC 59.123 47.619 0.00 0.00 41.57 4.17
2039 2156 7.431249 TGTAATAACACTATTCCGCTAGAAGG 58.569 38.462 0.00 0.00 38.07 3.46
2049 2166 5.927281 TTCCGCTAGAAGGTATACAAACT 57.073 39.130 5.01 3.08 0.00 2.66
2115 2236 5.874810 TCCTCATGTATGCAGTTTAAGACAC 59.125 40.000 0.00 0.00 0.00 3.67
2117 2238 5.474825 TCATGTATGCAGTTTAAGACACGA 58.525 37.500 0.00 0.00 0.00 4.35
2143 2264 7.923414 ATTCTATTTTCCACACCTTCTACAC 57.077 36.000 0.00 0.00 0.00 2.90
2224 2347 6.929049 TGTGAAGTGACATTTTCTTCGTAGAT 59.071 34.615 0.00 0.00 39.97 1.98
2264 2387 7.385778 TGGCTATTTAACAAACTGGATGTAC 57.614 36.000 0.00 0.00 0.00 2.90
2330 2457 1.823250 GCTTGTGGAATGGGGTCACTT 60.823 52.381 0.00 0.00 33.04 3.16
2396 2523 4.654724 ACCTTTAGTATTAGGGAGCCACTC 59.345 45.833 0.00 0.00 35.79 3.51
2414 2541 1.523711 CGGCGTATGTGCTGGGATT 60.524 57.895 0.00 0.00 37.59 3.01
2524 2651 0.392336 CAGGGCTCTAGAGTGCATCC 59.608 60.000 20.75 12.46 36.36 3.51
2541 2668 3.290710 CATCCCCTGTACAATTTCCTGG 58.709 50.000 0.00 0.00 0.00 4.45
2546 2673 2.493278 CCTGTACAATTTCCTGGCCTTG 59.507 50.000 3.32 0.68 0.00 3.61
2554 2681 1.140312 TTCCTGGCCTTGTTCTGTCT 58.860 50.000 3.32 0.00 0.00 3.41
2626 2753 4.096984 GGGAGAGAAAATTTGATCATGCGT 59.903 41.667 0.00 0.00 0.00 5.24
2627 2754 5.393461 GGGAGAGAAAATTTGATCATGCGTT 60.393 40.000 0.00 0.00 0.00 4.84
2678 2805 2.643551 CCCATAGCTGTTACTTGTGGG 58.356 52.381 0.00 0.00 37.76 4.61
2736 2863 1.262151 GTGCTTGCTTTTGCCATTGTG 59.738 47.619 0.00 0.00 46.87 3.33
2752 2879 3.902881 TTGTGTTCTTGCCCAATTTGT 57.097 38.095 0.00 0.00 0.00 2.83
2819 2948 3.436704 GTGCATGTGTTCTTGCTTAGCTA 59.563 43.478 5.60 0.00 42.66 3.32
2821 2950 4.083324 TGCATGTGTTCTTGCTTAGCTAAC 60.083 41.667 5.60 8.06 42.66 2.34
2822 2951 4.083324 GCATGTGTTCTTGCTTAGCTAACA 60.083 41.667 5.60 10.50 40.22 2.41
2866 2995 6.934083 TGCTGTATTTCTCGCCATGATTATTA 59.066 34.615 0.00 0.00 0.00 0.98
2867 2996 7.607607 TGCTGTATTTCTCGCCATGATTATTAT 59.392 33.333 0.00 0.00 0.00 1.28
2874 3003 7.984422 TCTCGCCATGATTATTATGACAAAT 57.016 32.000 0.00 0.00 0.00 2.32
2994 3123 3.840124 CAGGAATACTGTAGGGGAACC 57.160 52.381 0.00 0.00 46.90 3.62
3021 3150 8.307483 CCCTATGGTATGTGTAGTAGATTCTTG 58.693 40.741 0.00 0.00 0.00 3.02
3044 3173 7.894376 TGTAATATAAAATGTAGGGCTACGC 57.106 36.000 0.00 0.00 38.85 4.42
3046 3175 8.152246 TGTAATATAAAATGTAGGGCTACGCTT 58.848 33.333 0.00 0.00 38.85 4.68
3048 3177 2.038387 AAATGTAGGGCTACGCTTGG 57.962 50.000 0.00 0.00 38.85 3.61
3142 3272 4.134379 TGTGTTTGGCATCAACAAATGT 57.866 36.364 6.33 0.00 39.68 2.71
3159 3289 4.355543 AATGTAGCACTTGCATAAACCG 57.644 40.909 3.62 0.00 45.16 4.44
3213 3346 7.363431 CAGTATTTGAAAAAGAGGTCTCAACC 58.637 38.462 0.55 0.00 46.87 3.77
3427 3561 4.530161 ACAGGATATAGAGATGGGCTCAAC 59.470 45.833 0.00 0.00 46.45 3.18
3532 3666 8.463930 AAGTACCATGTATCATTGTAAATGGG 57.536 34.615 14.66 0.00 41.77 4.00
4108 4305 4.202245 TCTCCCTGAACCTTGATTTACG 57.798 45.455 0.00 0.00 0.00 3.18
4378 4577 4.320494 CCAATACAGGTGTTCTTGCTGTTC 60.320 45.833 0.00 0.00 0.00 3.18
4467 4666 5.730550 TGATAGAAGAAGCGTGTTAATGGT 58.269 37.500 0.00 0.00 0.00 3.55
4487 4686 8.862325 AATGGTATGTGTTCTCTTGTATTGAA 57.138 30.769 0.00 0.00 0.00 2.69
4500 4699 7.118825 TCTCTTGTATTGAAAGATGTGCAGAAG 59.881 37.037 0.00 0.00 33.34 2.85
4727 4935 8.324191 TCTAATCATGACTTCCTGAATAACCT 57.676 34.615 0.00 0.00 0.00 3.50
4960 5168 8.664748 AGAACCATGGTAGAGTTCTACGACTTT 61.665 40.741 20.12 0.00 46.32 2.66
4973 5181 5.916318 TCTACGACTTTTACCCAAGACAAA 58.084 37.500 0.00 0.00 0.00 2.83
5072 5282 2.285083 ACTAGTCAAACGTGCAAGCAA 58.715 42.857 0.00 0.00 0.00 3.91
5129 5339 2.567615 ACCTTGGTCCAGTGATCAGTAC 59.432 50.000 1.86 0.00 31.96 2.73
5296 5507 6.963117 TTGAAGGGGTAAAAGGAGATCTTA 57.037 37.500 0.00 0.00 34.78 2.10
5320 5531 5.880901 TGAAGTTTAGATCTCCAAAAGGCT 58.119 37.500 0.00 0.00 0.00 4.58
5322 5533 4.013050 AGTTTAGATCTCCAAAAGGCTGC 58.987 43.478 0.00 0.00 0.00 5.25
5443 5654 5.004448 TCTTCGTATAGCCTCTGTATGGAG 58.996 45.833 0.00 0.00 0.00 3.86
5454 5665 4.465660 CCTCTGTATGGAGTATGATCCCAG 59.534 50.000 0.00 0.00 38.72 4.45
5519 5730 5.147330 TGACATATGGTATAGCCTTTCCG 57.853 43.478 7.80 0.00 38.35 4.30
5539 5750 5.502079 TCCGGAAACATATTAGCTTTTGGA 58.498 37.500 0.00 0.00 0.00 3.53
5568 5781 5.583495 ACTGTACGTCATGAGCTTTAGATC 58.417 41.667 0.00 0.00 0.00 2.75
5663 5882 3.426159 CCACTGCCATGTTCGTGATTAAC 60.426 47.826 6.97 0.00 0.00 2.01
6164 6391 0.247460 CTCGACTTGTGCTGGATGGA 59.753 55.000 0.00 0.00 0.00 3.41
6223 6450 0.467844 TGCCTGTGTGCAATTCCTGT 60.468 50.000 0.00 0.00 38.56 4.00
6425 6652 5.126067 AGATAGAATTGGACGACCATTTGG 58.874 41.667 16.69 0.00 46.34 3.28
6865 7101 2.857748 CAAGGTCTGAAAACGTTTTGGC 59.142 45.455 29.67 17.59 0.00 4.52
6884 7121 4.643463 TGGCGAAAATGTCAAACCTAGTA 58.357 39.130 0.00 0.00 0.00 1.82
6925 7243 9.606631 GCTAGATATTGGAATATAACCTGAAGG 57.393 37.037 0.00 0.00 35.01 3.46
6944 7262 9.436957 CCTGAAGGTAAACACATATATATGGTC 57.563 37.037 23.44 9.20 38.00 4.02
6945 7263 9.140286 CTGAAGGTAAACACATATATATGGTCG 57.860 37.037 23.44 14.82 38.00 4.79
6946 7264 7.601130 TGAAGGTAAACACATATATATGGTCGC 59.399 37.037 23.44 10.32 38.00 5.19
6947 7265 6.403878 AGGTAAACACATATATATGGTCGCC 58.596 40.000 23.44 16.80 38.00 5.54
6959 7301 0.250684 TGGTCGCCTGAAATTCAGCA 60.251 50.000 17.03 6.79 42.98 4.41
6962 7304 2.094545 GGTCGCCTGAAATTCAGCATTT 60.095 45.455 17.03 0.00 42.98 2.32
6964 7306 3.365820 GTCGCCTGAAATTCAGCATTTTG 59.634 43.478 17.03 4.14 42.98 2.44
6972 7314 7.225145 CCTGAAATTCAGCATTTTGAAGTTGAA 59.775 33.333 17.03 0.00 43.10 2.69
7051 7397 2.104253 GGTGGGTATCAACGTGCCG 61.104 63.158 0.00 0.00 0.00 5.69
7057 7403 1.066752 TATCAACGTGCCGATCCCG 59.933 57.895 0.00 0.00 0.00 5.14
7087 7433 0.317479 CGTTCTTCTCCTTCACGGGT 59.683 55.000 0.00 0.00 0.00 5.28
7105 7451 0.448197 GTAGCAAAGCTTCCTTCGCC 59.552 55.000 0.00 0.00 40.44 5.54
7140 7486 1.950973 TACGGTGCGCCTGCTAATCA 61.951 55.000 15.69 0.00 43.34 2.57
7141 7487 1.889105 CGGTGCGCCTGCTAATCAT 60.889 57.895 15.69 0.00 43.34 2.45
7142 7488 1.835483 CGGTGCGCCTGCTAATCATC 61.835 60.000 15.69 0.00 43.34 2.92
7143 7489 0.533755 GGTGCGCCTGCTAATCATCT 60.534 55.000 9.68 0.00 43.34 2.90
7144 7490 0.864455 GTGCGCCTGCTAATCATCTC 59.136 55.000 4.18 0.00 43.34 2.75
7145 7491 0.465287 TGCGCCTGCTAATCATCTCA 59.535 50.000 4.18 0.00 43.34 3.27
7146 7492 1.071228 TGCGCCTGCTAATCATCTCAT 59.929 47.619 4.18 0.00 43.34 2.90
7147 7493 2.149578 GCGCCTGCTAATCATCTCATT 58.850 47.619 0.00 0.00 38.39 2.57
7149 7495 3.608707 GCGCCTGCTAATCATCTCATTTG 60.609 47.826 0.00 0.00 38.39 2.32
7158 7504 7.997223 TGCTAATCATCTCATTTGATCCTTCTT 59.003 33.333 0.00 0.00 32.72 2.52
7166 7514 5.752650 TCATTTGATCCTTCTTCAGCAGAT 58.247 37.500 0.00 0.00 0.00 2.90
7170 7518 5.946942 TGATCCTTCTTCAGCAGATTACT 57.053 39.130 0.00 0.00 0.00 2.24
7171 7519 5.668471 TGATCCTTCTTCAGCAGATTACTG 58.332 41.667 0.00 0.00 45.91 2.74
7172 7520 5.423290 TGATCCTTCTTCAGCAGATTACTGA 59.577 40.000 0.00 0.00 46.03 3.41
7173 7521 5.078411 TCCTTCTTCAGCAGATTACTGAC 57.922 43.478 0.00 0.00 43.64 3.51
7174 7522 4.081420 TCCTTCTTCAGCAGATTACTGACC 60.081 45.833 0.00 0.00 43.64 4.02
7175 7523 4.081198 CCTTCTTCAGCAGATTACTGACCT 60.081 45.833 0.00 0.00 43.64 3.85
7176 7524 5.127845 CCTTCTTCAGCAGATTACTGACCTA 59.872 44.000 0.00 0.00 43.64 3.08
7177 7525 5.584253 TCTTCAGCAGATTACTGACCTAC 57.416 43.478 0.00 0.00 43.64 3.18
7178 7526 5.016831 TCTTCAGCAGATTACTGACCTACA 58.983 41.667 0.00 0.00 43.64 2.74
7179 7527 5.480422 TCTTCAGCAGATTACTGACCTACAA 59.520 40.000 0.00 0.00 43.64 2.41
7182 7530 6.806751 TCAGCAGATTACTGACCTACAATAC 58.193 40.000 0.00 0.00 46.03 1.89
7184 7532 7.041721 CAGCAGATTACTGACCTACAATACAA 58.958 38.462 0.00 0.00 46.03 2.41
7187 7535 7.710907 GCAGATTACTGACCTACAATACAATCA 59.289 37.037 0.00 0.00 46.03 2.57
7198 7546 4.539726 ACAATACAATCACATCTGGGCAT 58.460 39.130 0.00 0.00 0.00 4.40
7199 7547 5.693961 ACAATACAATCACATCTGGGCATA 58.306 37.500 0.00 0.00 0.00 3.14
7200 7548 6.128486 ACAATACAATCACATCTGGGCATAA 58.872 36.000 0.00 0.00 0.00 1.90
7201 7549 6.263842 ACAATACAATCACATCTGGGCATAAG 59.736 38.462 0.00 0.00 0.00 1.73
7205 7553 6.367983 ACAATCACATCTGGGCATAAGTAAT 58.632 36.000 0.00 0.00 0.00 1.89
7351 7703 4.268687 GTGAAGTCACCCGAGCTG 57.731 61.111 0.00 0.00 40.85 4.24
7458 7942 0.109597 GTCTTTCATTGTGCTGCCGG 60.110 55.000 0.00 0.00 0.00 6.13
7496 7984 2.251869 TTAGACGACCGAATCACACG 57.748 50.000 0.00 0.00 0.00 4.49
7502 7992 2.227968 GACCGAATCACACGCACAGC 62.228 60.000 0.00 0.00 0.00 4.40
7531 8021 6.350949 GCATGTATTTGTACAGGGACCAAATT 60.351 38.462 0.00 0.00 39.04 1.82
7590 8080 1.462731 AACTTGCAGCCAAATCGCCA 61.463 50.000 0.00 0.00 0.00 5.69
7613 8103 4.962836 GGCATGGCGGCTGGCTAT 62.963 66.667 21.03 9.26 44.62 2.97
7623 8113 1.593750 GCTGGCTATGACTGAGCGG 60.594 63.158 0.00 0.00 41.06 5.52
7625 8115 2.280457 GGCTATGACTGAGCGGCC 60.280 66.667 0.00 0.00 41.06 6.13
7626 8116 2.801631 GGCTATGACTGAGCGGCCT 61.802 63.158 0.00 0.00 41.06 5.19
7628 8118 1.593750 CTATGACTGAGCGGCCTGC 60.594 63.158 11.02 11.02 46.98 4.85
7639 8129 4.002797 GGCCTGCCGATCAAAGTT 57.997 55.556 0.00 0.00 0.00 2.66
7640 8130 1.803289 GGCCTGCCGATCAAAGTTC 59.197 57.895 0.00 0.00 0.00 3.01
7641 8131 0.960364 GGCCTGCCGATCAAAGTTCA 60.960 55.000 0.00 0.00 0.00 3.18
7642 8132 0.881118 GCCTGCCGATCAAAGTTCAA 59.119 50.000 0.00 0.00 0.00 2.69
7644 8134 2.922335 GCCTGCCGATCAAAGTTCAAAC 60.922 50.000 0.00 0.00 0.00 2.93
7645 8135 2.293122 CCTGCCGATCAAAGTTCAAACA 59.707 45.455 0.00 0.00 0.00 2.83
7646 8136 3.558505 CTGCCGATCAAAGTTCAAACAG 58.441 45.455 0.00 0.00 0.00 3.16
7651 8141 3.555518 GATCAAAGTTCAAACAGTCGGC 58.444 45.455 0.00 0.00 0.00 5.54
7653 8143 1.329292 CAAAGTTCAAACAGTCGGCGA 59.671 47.619 4.99 4.99 0.00 5.54
7654 8144 0.935196 AAGTTCAAACAGTCGGCGAC 59.065 50.000 31.33 31.33 0.00 5.19
7655 8145 0.179094 AGTTCAAACAGTCGGCGACA 60.179 50.000 37.71 16.66 34.60 4.35
7656 8146 0.865769 GTTCAAACAGTCGGCGACAT 59.134 50.000 37.71 24.50 34.60 3.06
7657 8147 1.136336 GTTCAAACAGTCGGCGACATC 60.136 52.381 37.71 15.24 34.60 3.06
7658 8148 1.006825 TCAAACAGTCGGCGACATCG 61.007 55.000 37.71 27.40 43.27 3.84
7659 8149 1.736645 AAACAGTCGGCGACATCGG 60.737 57.895 37.71 25.78 40.23 4.18
7803 8330 1.900486 GCCCTGTAAGTCAGTACCTGT 59.100 52.381 0.00 0.00 42.19 4.00
7811 8338 4.634012 AAGTCAGTACCTGTGGCAAATA 57.366 40.909 0.00 0.00 32.61 1.40
7812 8339 4.634012 AGTCAGTACCTGTGGCAAATAA 57.366 40.909 0.00 0.00 32.61 1.40
7813 8340 4.324267 AGTCAGTACCTGTGGCAAATAAC 58.676 43.478 0.00 0.00 32.61 1.89
7814 8341 3.439129 GTCAGTACCTGTGGCAAATAACC 59.561 47.826 0.00 0.00 32.61 2.85
7815 8342 2.752903 CAGTACCTGTGGCAAATAACCC 59.247 50.000 0.00 0.00 0.00 4.11
7816 8343 2.647802 AGTACCTGTGGCAAATAACCCT 59.352 45.455 0.00 0.00 0.00 4.34
7817 8344 1.923356 ACCTGTGGCAAATAACCCTG 58.077 50.000 0.00 0.00 0.00 4.45
7818 8345 1.185315 CCTGTGGCAAATAACCCTGG 58.815 55.000 0.00 0.00 0.00 4.45
7819 8346 1.272425 CCTGTGGCAAATAACCCTGGA 60.272 52.381 0.00 0.00 0.00 3.86
7820 8347 2.094675 CTGTGGCAAATAACCCTGGAG 58.905 52.381 0.00 0.00 0.00 3.86
7821 8348 0.817654 GTGGCAAATAACCCTGGAGC 59.182 55.000 0.00 0.00 0.00 4.70
7822 8349 0.407528 TGGCAAATAACCCTGGAGCA 59.592 50.000 0.00 0.00 0.00 4.26
7823 8350 1.203112 TGGCAAATAACCCTGGAGCAA 60.203 47.619 0.00 0.00 0.00 3.91
7824 8351 1.899142 GGCAAATAACCCTGGAGCAAA 59.101 47.619 0.00 0.00 0.00 3.68
7825 8352 2.501316 GGCAAATAACCCTGGAGCAAAT 59.499 45.455 0.00 0.00 0.00 2.32
7837 8364 4.384537 CCTGGAGCAAATCATCTAAGACCA 60.385 45.833 0.00 0.00 0.00 4.02
7842 8369 6.096001 GGAGCAAATCATCTAAGACCATGTTT 59.904 38.462 0.00 0.00 0.00 2.83
7939 8472 1.668294 CGGAGTTGTGGAGCAGAGT 59.332 57.895 0.00 0.00 0.00 3.24
7945 8478 0.106708 TTGTGGAGCAGAGTGACACC 59.893 55.000 0.84 0.00 0.00 4.16
7959 8497 1.339631 TGACACCGGGCCTAAATCTTG 60.340 52.381 6.32 0.00 0.00 3.02
7981 8519 9.330063 TCTTGATAGTGTGGCAAATAATCTAAG 57.670 33.333 0.00 0.00 0.00 2.18
7984 8522 3.065371 AGTGTGGCAAATAATCTAAGCGC 59.935 43.478 0.00 0.00 0.00 5.92
7991 8529 4.513318 GCAAATAATCTAAGCGCCTTCTCT 59.487 41.667 2.29 0.00 0.00 3.10
7993 8531 5.537300 AATAATCTAAGCGCCTTCTCTGA 57.463 39.130 2.29 0.00 0.00 3.27
8007 8545 6.529220 GCCTTCTCTGATGATACCTAAACAT 58.471 40.000 0.00 0.00 0.00 2.71
8102 8645 9.990360 TCATGATAGAAAACTTGTGTGTACTAA 57.010 29.630 0.00 0.00 0.00 2.24
8116 8660 5.468746 GTGTGTACTAAATCAAACTGAGGCA 59.531 40.000 0.00 0.00 0.00 4.75
8262 8806 9.717942 ATTATCTTTGTTATGCTATCAGTCTCC 57.282 33.333 0.00 0.00 0.00 3.71
8293 8837 3.864243 TGGTAAAACGACACTGTCACTT 58.136 40.909 9.84 0.00 32.09 3.16
8313 8857 2.920724 TTTCATCCACACGGACTTGA 57.079 45.000 0.00 0.00 46.79 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
223 227 0.700564 ACCTGACAGGGATGTGCAAT 59.299 50.000 25.34 0.00 40.58 3.56
301 305 4.562394 CGCATGGATATGTTTTGACAAACC 59.438 41.667 0.00 0.00 41.60 3.27
468 472 3.244181 GGAAAAGGTAAGTACGTGGTCCA 60.244 47.826 0.00 0.00 32.46 4.02
620 625 0.310854 GTCTTCCGTTGTTTGGGCTG 59.689 55.000 0.00 0.00 0.00 4.85
621 626 0.106918 TGTCTTCCGTTGTTTGGGCT 60.107 50.000 0.00 0.00 0.00 5.19
622 627 0.030235 GTGTCTTCCGTTGTTTGGGC 59.970 55.000 0.00 0.00 0.00 5.36
623 628 1.333619 CTGTGTCTTCCGTTGTTTGGG 59.666 52.381 0.00 0.00 0.00 4.12
624 629 2.031683 GTCTGTGTCTTCCGTTGTTTGG 59.968 50.000 0.00 0.00 0.00 3.28
625 630 2.675844 TGTCTGTGTCTTCCGTTGTTTG 59.324 45.455 0.00 0.00 0.00 2.93
626 631 2.980568 TGTCTGTGTCTTCCGTTGTTT 58.019 42.857 0.00 0.00 0.00 2.83
627 632 2.684001 TGTCTGTGTCTTCCGTTGTT 57.316 45.000 0.00 0.00 0.00 2.83
628 633 2.550978 CTTGTCTGTGTCTTCCGTTGT 58.449 47.619 0.00 0.00 0.00 3.32
629 634 1.261619 GCTTGTCTGTGTCTTCCGTTG 59.738 52.381 0.00 0.00 0.00 4.10
630 635 1.134521 TGCTTGTCTGTGTCTTCCGTT 60.135 47.619 0.00 0.00 0.00 4.44
631 636 0.464036 TGCTTGTCTGTGTCTTCCGT 59.536 50.000 0.00 0.00 0.00 4.69
632 637 1.143305 CTGCTTGTCTGTGTCTTCCG 58.857 55.000 0.00 0.00 0.00 4.30
633 638 2.036475 TCTCTGCTTGTCTGTGTCTTCC 59.964 50.000 0.00 0.00 0.00 3.46
634 639 3.377346 TCTCTGCTTGTCTGTGTCTTC 57.623 47.619 0.00 0.00 0.00 2.87
635 640 3.827008 TTCTCTGCTTGTCTGTGTCTT 57.173 42.857 0.00 0.00 0.00 3.01
636 641 3.613671 CGATTCTCTGCTTGTCTGTGTCT 60.614 47.826 0.00 0.00 0.00 3.41
637 642 2.665537 CGATTCTCTGCTTGTCTGTGTC 59.334 50.000 0.00 0.00 0.00 3.67
638 643 2.611473 CCGATTCTCTGCTTGTCTGTGT 60.611 50.000 0.00 0.00 0.00 3.72
639 644 1.998315 CCGATTCTCTGCTTGTCTGTG 59.002 52.381 0.00 0.00 0.00 3.66
640 645 1.066573 CCCGATTCTCTGCTTGTCTGT 60.067 52.381 0.00 0.00 0.00 3.41
641 646 1.649664 CCCGATTCTCTGCTTGTCTG 58.350 55.000 0.00 0.00 0.00 3.51
642 647 0.107945 GCCCGATTCTCTGCTTGTCT 60.108 55.000 0.00 0.00 0.00 3.41
643 648 0.107945 AGCCCGATTCTCTGCTTGTC 60.108 55.000 0.00 0.00 0.00 3.18
644 649 0.392193 CAGCCCGATTCTCTGCTTGT 60.392 55.000 0.00 0.00 30.08 3.16
645 650 1.094073 CCAGCCCGATTCTCTGCTTG 61.094 60.000 0.00 0.00 30.08 4.01
646 651 1.222936 CCAGCCCGATTCTCTGCTT 59.777 57.895 0.00 0.00 30.08 3.91
647 652 1.687146 TCCAGCCCGATTCTCTGCT 60.687 57.895 0.00 0.00 33.52 4.24
648 653 1.522580 GTCCAGCCCGATTCTCTGC 60.523 63.158 0.00 0.00 0.00 4.26
649 654 1.227089 CGTCCAGCCCGATTCTCTG 60.227 63.158 0.00 0.00 0.00 3.35
650 655 3.082579 GCGTCCAGCCCGATTCTCT 62.083 63.158 0.00 0.00 40.81 3.10
651 656 2.586357 GCGTCCAGCCCGATTCTC 60.586 66.667 0.00 0.00 40.81 2.87
673 678 2.413453 GTCTCGTTTTCAGCCTGCTAAG 59.587 50.000 0.00 0.00 0.00 2.18
674 679 2.224185 TGTCTCGTTTTCAGCCTGCTAA 60.224 45.455 0.00 0.00 0.00 3.09
675 680 1.343142 TGTCTCGTTTTCAGCCTGCTA 59.657 47.619 0.00 0.00 0.00 3.49
676 681 0.106708 TGTCTCGTTTTCAGCCTGCT 59.893 50.000 0.00 0.00 0.00 4.24
677 682 0.514691 CTGTCTCGTTTTCAGCCTGC 59.485 55.000 0.00 0.00 0.00 4.85
678 683 0.514691 GCTGTCTCGTTTTCAGCCTG 59.485 55.000 5.25 0.00 45.76 4.85
679 684 2.919971 GCTGTCTCGTTTTCAGCCT 58.080 52.632 5.25 0.00 45.76 4.58
682 687 2.213499 AGTTGGCTGTCTCGTTTTCAG 58.787 47.619 0.00 0.00 0.00 3.02
683 688 2.158957 AGAGTTGGCTGTCTCGTTTTCA 60.159 45.455 0.00 0.00 36.03 2.69
684 689 2.476997 GAGAGTTGGCTGTCTCGTTTTC 59.523 50.000 0.00 0.00 36.03 2.29
685 690 2.484889 GAGAGTTGGCTGTCTCGTTTT 58.515 47.619 0.00 0.00 36.03 2.43
686 691 1.270358 GGAGAGTTGGCTGTCTCGTTT 60.270 52.381 5.60 0.00 40.24 3.60
687 692 0.318762 GGAGAGTTGGCTGTCTCGTT 59.681 55.000 5.60 0.00 40.24 3.85
688 693 0.827925 TGGAGAGTTGGCTGTCTCGT 60.828 55.000 5.60 0.00 40.24 4.18
689 694 0.318441 TTGGAGAGTTGGCTGTCTCG 59.682 55.000 5.60 0.00 40.24 4.04
690 695 1.070758 TGTTGGAGAGTTGGCTGTCTC 59.929 52.381 3.58 3.58 38.84 3.36
691 696 1.131638 TGTTGGAGAGTTGGCTGTCT 58.868 50.000 0.00 0.00 35.57 3.41
692 697 1.230324 GTGTTGGAGAGTTGGCTGTC 58.770 55.000 0.00 0.00 34.59 3.51
693 698 0.532862 CGTGTTGGAGAGTTGGCTGT 60.533 55.000 0.00 0.00 0.00 4.40
694 699 0.249868 TCGTGTTGGAGAGTTGGCTG 60.250 55.000 0.00 0.00 0.00 4.85
695 700 0.468226 TTCGTGTTGGAGAGTTGGCT 59.532 50.000 0.00 0.00 0.00 4.75
696 701 1.464997 GATTCGTGTTGGAGAGTTGGC 59.535 52.381 0.00 0.00 0.00 4.52
697 702 3.045601 AGATTCGTGTTGGAGAGTTGG 57.954 47.619 0.00 0.00 0.00 3.77
698 703 6.539649 TTTAAGATTCGTGTTGGAGAGTTG 57.460 37.500 0.00 0.00 0.00 3.16
699 704 5.179555 GCTTTAAGATTCGTGTTGGAGAGTT 59.820 40.000 0.00 0.00 0.00 3.01
700 705 4.691216 GCTTTAAGATTCGTGTTGGAGAGT 59.309 41.667 0.00 0.00 0.00 3.24
701 706 4.690748 TGCTTTAAGATTCGTGTTGGAGAG 59.309 41.667 0.00 0.00 0.00 3.20
702 707 4.637276 TGCTTTAAGATTCGTGTTGGAGA 58.363 39.130 0.00 0.00 0.00 3.71
703 708 5.179368 TCTTGCTTTAAGATTCGTGTTGGAG 59.821 40.000 0.00 0.00 40.43 3.86
704 709 5.060506 TCTTGCTTTAAGATTCGTGTTGGA 58.939 37.500 0.00 0.00 40.43 3.53
705 710 5.356882 TCTTGCTTTAAGATTCGTGTTGG 57.643 39.130 0.00 0.00 40.43 3.77
706 711 7.858052 ATTTCTTGCTTTAAGATTCGTGTTG 57.142 32.000 0.00 0.00 44.54 3.33
708 713 9.774742 GATTATTTCTTGCTTTAAGATTCGTGT 57.225 29.630 0.00 0.00 44.54 4.49
709 714 9.773328 TGATTATTTCTTGCTTTAAGATTCGTG 57.227 29.630 0.00 0.00 44.54 4.35
715 720 8.342634 GCCGTATGATTATTTCTTGCTTTAAGA 58.657 33.333 0.00 0.00 43.53 2.10
716 721 8.345565 AGCCGTATGATTATTTCTTGCTTTAAG 58.654 33.333 0.00 0.00 37.76 1.85
717 722 8.128582 CAGCCGTATGATTATTTCTTGCTTTAA 58.871 33.333 0.00 0.00 0.00 1.52
718 723 7.497579 TCAGCCGTATGATTATTTCTTGCTTTA 59.502 33.333 0.00 0.00 0.00 1.85
719 724 6.318648 TCAGCCGTATGATTATTTCTTGCTTT 59.681 34.615 0.00 0.00 0.00 3.51
720 725 5.822519 TCAGCCGTATGATTATTTCTTGCTT 59.177 36.000 0.00 0.00 0.00 3.91
721 726 5.368145 TCAGCCGTATGATTATTTCTTGCT 58.632 37.500 0.00 0.00 0.00 3.91
722 727 5.673337 TCAGCCGTATGATTATTTCTTGC 57.327 39.130 0.00 0.00 0.00 4.01
842 851 1.479323 TCGTTGTACTATCTGCCACCC 59.521 52.381 0.00 0.00 0.00 4.61
843 852 2.953466 TCGTTGTACTATCTGCCACC 57.047 50.000 0.00 0.00 0.00 4.61
844 853 4.440103 CGTATTCGTTGTACTATCTGCCAC 59.560 45.833 0.00 0.00 0.00 5.01
846 855 4.674211 GTCGTATTCGTTGTACTATCTGCC 59.326 45.833 0.00 0.00 38.33 4.85
848 857 5.680229 GGTGTCGTATTCGTTGTACTATCTG 59.320 44.000 0.00 0.00 38.33 2.90
849 858 5.355071 TGGTGTCGTATTCGTTGTACTATCT 59.645 40.000 0.00 0.00 38.33 1.98
851 860 5.565592 TGGTGTCGTATTCGTTGTACTAT 57.434 39.130 0.00 0.00 38.33 2.12
852 861 5.153513 GTTGGTGTCGTATTCGTTGTACTA 58.846 41.667 0.00 0.00 38.33 1.82
853 862 3.921119 TGGTGTCGTATTCGTTGTACT 57.079 42.857 0.00 0.00 38.33 2.73
1051 1070 2.284405 GGTGGAGAACGGGGAGGA 60.284 66.667 0.00 0.00 0.00 3.71
1061 1080 4.741239 GGCCTCAGGGGGTGGAGA 62.741 72.222 0.00 0.00 32.87 3.71
1230 1252 4.568956 TGATGCATACACGGATAGGAATG 58.431 43.478 0.00 0.00 0.00 2.67
1231 1253 4.890158 TGATGCATACACGGATAGGAAT 57.110 40.909 0.00 0.00 0.00 3.01
1246 1268 1.001020 ACCAGGCGGAAATGATGCA 60.001 52.632 0.00 0.00 35.59 3.96
1249 1271 0.327924 TCACACCAGGCGGAAATGAT 59.672 50.000 2.43 0.00 35.59 2.45
1310 1332 3.701604 GAAGTCGCCGCCGATGAGT 62.702 63.158 0.00 0.00 46.38 3.41
1395 1417 2.056223 GTCGACCGATTGGGAGGGA 61.056 63.158 3.51 0.00 40.75 4.20
1427 1449 4.607955 TCGACAGCTATAAAATCGACCAG 58.392 43.478 0.00 0.00 36.92 4.00
1666 1689 6.896860 TGGTTTCTATTGATGGACATTGGAAT 59.103 34.615 0.00 0.00 32.50 3.01
1674 1697 8.682936 ATAACTGATGGTTTCTATTGATGGAC 57.317 34.615 0.00 0.00 39.17 4.02
1717 1740 3.006110 CACCACCAATGAAGCACAGAATT 59.994 43.478 0.00 0.00 0.00 2.17
1818 1842 1.425066 TCACCCCAAGCATCTTTCAGT 59.575 47.619 0.00 0.00 0.00 3.41
1868 1899 4.944048 AGGCCAAAAACAAGTGTAATGAC 58.056 39.130 5.01 0.00 0.00 3.06
1869 1900 5.606348 AAGGCCAAAAACAAGTGTAATGA 57.394 34.783 5.01 0.00 0.00 2.57
1872 1903 6.370166 CAGAAAAAGGCCAAAAACAAGTGTAA 59.630 34.615 5.01 0.00 0.00 2.41
1890 1921 5.528043 TCTAACCAATGCAAGCAGAAAAA 57.472 34.783 0.00 0.00 0.00 1.94
1932 1963 2.222213 TCAACAACTAACACGATTGCGG 59.778 45.455 0.00 0.00 43.17 5.69
1934 1965 5.788531 GTGTATCAACAACTAACACGATTGC 59.211 40.000 0.00 0.00 37.36 3.56
1965 1996 0.461548 TCATCAGACTAGCTTGCGGG 59.538 55.000 0.00 0.00 0.00 6.13
1971 2002 4.599041 AGAGTGAACTCATCAGACTAGCT 58.401 43.478 12.76 0.00 45.21 3.32
1972 2003 4.640201 AGAGAGTGAACTCATCAGACTAGC 59.360 45.833 12.76 0.00 45.21 3.42
1973 2004 6.037500 CAGAGAGAGTGAACTCATCAGACTAG 59.962 46.154 12.76 0.00 45.21 2.57
1974 2005 5.879777 CAGAGAGAGTGAACTCATCAGACTA 59.120 44.000 12.76 0.00 45.21 2.59
2039 2156 6.395629 TCTGCTTACTGACCAGTTTGTATAC 58.604 40.000 8.06 0.00 42.54 1.47
2049 2166 6.767902 GGATGATTTATTCTGCTTACTGACCA 59.232 38.462 0.00 0.00 0.00 4.02
2115 2236 8.979574 GTAGAAGGTGTGGAAAATAGAATATCG 58.020 37.037 0.00 0.00 0.00 2.92
2117 2238 9.614792 GTGTAGAAGGTGTGGAAAATAGAATAT 57.385 33.333 0.00 0.00 0.00 1.28
2129 2250 1.609061 CCTGCAGTGTAGAAGGTGTGG 60.609 57.143 13.81 0.00 0.00 4.17
2143 2264 1.434622 GGCATCGACATGTCCTGCAG 61.435 60.000 32.45 17.03 36.83 4.41
2224 2347 3.951563 AGCCAATATAACCAAGAGGCA 57.048 42.857 0.00 0.00 42.90 4.75
2330 2457 4.330944 AGATACGTATTCGCCCATTTGA 57.669 40.909 9.92 0.00 41.18 2.69
2396 2523 1.095228 AAATCCCAGCACATACGCCG 61.095 55.000 0.00 0.00 0.00 6.46
2414 2541 1.278699 GCAGGGAAATTGAATGGGCAA 59.721 47.619 0.00 0.00 0.00 4.52
2504 2631 1.407936 GATGCACTCTAGAGCCCTGA 58.592 55.000 19.97 0.00 0.00 3.86
2509 2636 0.392336 CAGGGGATGCACTCTAGAGC 59.608 60.000 19.97 8.36 0.00 4.09
2524 2651 1.005924 AGGCCAGGAAATTGTACAGGG 59.994 52.381 5.01 0.00 0.00 4.45
2541 2668 4.335594 ACAAAGTTACAGACAGAACAAGGC 59.664 41.667 0.00 0.00 0.00 4.35
2546 2673 9.783256 ATTAACAAACAAAGTTACAGACAGAAC 57.217 29.630 0.00 0.00 31.67 3.01
2554 2681 7.767261 AGCAGACATTAACAAACAAAGTTACA 58.233 30.769 0.00 0.00 31.67 2.41
2582 2709 9.542462 TCTCCCGAGTTTATATTACAAAGAATG 57.458 33.333 0.00 0.00 0.00 2.67
2603 2730 4.096984 ACGCATGATCAAATTTTCTCTCCC 59.903 41.667 0.00 0.00 0.00 4.30
2627 2754 7.950512 TCTGCATCCAAAGAACATAAGAAAAA 58.049 30.769 0.00 0.00 0.00 1.94
2678 2805 8.730680 TCTGATGGCTTTAGAACAAAAGTATTC 58.269 33.333 0.00 0.00 38.48 1.75
2736 2863 4.058721 AGTCAACAAATTGGGCAAGAAC 57.941 40.909 0.00 0.00 36.39 3.01
2752 2879 6.146216 CGCCACAACAACAATAAATAGTCAA 58.854 36.000 0.00 0.00 0.00 3.18
2801 2930 6.824305 AATGTTAGCTAAGCAAGAACACAT 57.176 33.333 6.38 1.18 33.34 3.21
2819 2948 5.768317 CACCGTTACCAATCTTCAAATGTT 58.232 37.500 0.00 0.00 0.00 2.71
2821 2950 4.082787 AGCACCGTTACCAATCTTCAAATG 60.083 41.667 0.00 0.00 0.00 2.32
2822 2951 4.079253 AGCACCGTTACCAATCTTCAAAT 58.921 39.130 0.00 0.00 0.00 2.32
2884 3013 3.620488 TGCACCAATTCCTTATGAGACC 58.380 45.455 0.00 0.00 0.00 3.85
2957 3086 9.457436 AGTATTCCTGTCCAAAACGTATATTTT 57.543 29.630 0.00 0.00 31.87 1.82
2994 3123 6.954684 AGAATCTACTACACATACCATAGGGG 59.045 42.308 0.00 0.00 44.81 4.79
3074 3204 6.600882 TCTAAAAAGACCACGGTATTCTCT 57.399 37.500 0.00 0.00 0.00 3.10
3083 3213 4.023193 ACCATGCTTTCTAAAAAGACCACG 60.023 41.667 2.21 0.00 43.90 4.94
3142 3272 4.196626 ACTACGGTTTATGCAAGTGCTA 57.803 40.909 4.69 0.00 42.66 3.49
3427 3561 8.244494 AGTGTGATATAAATTATGCAGTAGCG 57.756 34.615 0.00 0.00 46.23 4.26
3532 3666 7.488150 CGAGAATTAAAGCATTTTAAAGGACCC 59.512 37.037 0.00 0.00 40.91 4.46
3611 3745 1.202348 GCAGCCCCTGTTCACAAATAC 59.798 52.381 0.00 0.00 33.43 1.89
3619 3753 1.602311 CATCATAGCAGCCCCTGTTC 58.398 55.000 0.00 0.00 33.43 3.18
3735 3871 6.408869 AGAAGCAAATTATCAAACCCAATGG 58.591 36.000 0.00 0.00 37.80 3.16
3964 4161 5.941555 ATGAGAACCAGGTAACCTAAGAG 57.058 43.478 0.00 0.00 29.64 2.85
4108 4305 2.924290 GTCGATGCAGGAAAGTGTACTC 59.076 50.000 0.00 0.00 0.00 2.59
4206 4403 6.100279 TGCATGGATATCCTTGTTTCTAGAGT 59.900 38.462 28.90 0.00 41.65 3.24
4378 4577 5.820131 ACATGCCATTAACACGAATACATG 58.180 37.500 0.00 0.00 37.93 3.21
4409 4608 1.378531 AGCTTTGCATATTCGCGGAA 58.621 45.000 6.13 0.00 33.35 4.30
4410 4609 1.063912 CAAGCTTTGCATATTCGCGGA 59.936 47.619 6.13 0.00 33.35 5.54
4467 4666 9.725019 ACATCTTTCAATACAAGAGAACACATA 57.275 29.630 0.00 0.00 33.74 2.29
4487 4686 5.862845 TCTCTCTTTTCTTCTGCACATCTT 58.137 37.500 0.00 0.00 0.00 2.40
4500 4699 8.485976 AGTTATAACTGCACATCTCTCTTTTC 57.514 34.615 17.35 0.00 37.98 2.29
4568 4767 5.989477 AGCAACAGGAGTACAATAGCAATA 58.011 37.500 0.00 0.00 0.00 1.90
4773 4981 8.621286 CATGTTACACTAAAGGAAACAGAAACT 58.379 33.333 0.00 0.00 33.90 2.66
5072 5282 5.705905 GCTGTTCCAGAATTAACTACAAGGT 59.294 40.000 0.00 0.00 32.44 3.50
5086 5296 3.920231 AGCATCATTAGCTGTTCCAGA 57.080 42.857 0.00 0.00 41.61 3.86
5106 5316 1.625315 CTGATCACTGGACCAAGGTCA 59.375 52.381 20.03 8.75 46.20 4.02
5109 5319 2.567169 TGTACTGATCACTGGACCAAGG 59.433 50.000 0.00 0.00 0.00 3.61
5275 5486 7.138054 TCATAAGATCTCCTTTTACCCCTTC 57.862 40.000 0.00 0.00 36.34 3.46
5296 5507 6.376581 CAGCCTTTTGGAGATCTAAACTTCAT 59.623 38.462 0.00 0.00 44.07 2.57
5320 5531 7.870445 GTCCAATTTTAAACAGGTAATCAAGCA 59.130 33.333 0.00 0.00 0.00 3.91
5322 5533 8.293867 TCGTCCAATTTTAAACAGGTAATCAAG 58.706 33.333 0.00 0.00 0.00 3.02
5473 5684 8.681806 TCAACAGTTCATCATCACTAAAAACAA 58.318 29.630 0.00 0.00 0.00 2.83
5481 5692 6.541278 CCATATGTCAACAGTTCATCATCACT 59.459 38.462 1.24 0.00 0.00 3.41
5482 5693 6.317140 ACCATATGTCAACAGTTCATCATCAC 59.683 38.462 1.24 0.00 0.00 3.06
5483 5694 6.417258 ACCATATGTCAACAGTTCATCATCA 58.583 36.000 1.24 0.00 0.00 3.07
5484 5695 6.932356 ACCATATGTCAACAGTTCATCATC 57.068 37.500 1.24 0.00 0.00 2.92
5519 5730 8.303876 TCAAACTCCAAAAGCTAATATGTTTCC 58.696 33.333 0.00 0.00 0.00 3.13
5568 5781 5.824624 ACCATTGCAATGACTATGAAGGTAG 59.175 40.000 35.47 18.41 38.70 3.18
5751 5970 6.976934 AGCCTCCAAAAAGAAAATTGACTA 57.023 33.333 0.00 0.00 0.00 2.59
5949 6176 4.649674 ACAACTCTGGTCACTGTTTCTCTA 59.350 41.667 0.00 0.00 0.00 2.43
6164 6391 8.950007 TTCTTAAAATTACCACAATCTCCCTT 57.050 30.769 0.00 0.00 0.00 3.95
6223 6450 2.621338 GCGCATAGCTATCAGGCATAA 58.379 47.619 2.34 0.00 44.04 1.90
6418 6645 7.944061 TCAATCAGATATAACAAGCCAAATGG 58.056 34.615 0.00 0.00 38.53 3.16
6425 6652 7.283127 TCCAGGTTTCAATCAGATATAACAAGC 59.717 37.037 0.00 0.00 0.00 4.01
6627 6854 2.886523 CCTATGAGCTCACAGGAGAGAG 59.113 54.545 33.48 7.24 43.09 3.20
6677 6909 2.213499 CCATACCTGAGGACGATTTGC 58.787 52.381 4.99 0.00 0.00 3.68
6865 7101 6.780706 ACACTACTAGGTTTGACATTTTCG 57.219 37.500 0.00 0.00 0.00 3.46
6884 7121 9.113838 CCAATATCTAGCAAGAAACAATACACT 57.886 33.333 0.00 0.00 34.73 3.55
6925 7243 7.094631 TCAGGCGACCATATATATGTGTTTAC 58.905 38.462 19.11 11.03 31.82 2.01
6936 7254 4.065088 GCTGAATTTCAGGCGACCATATA 58.935 43.478 24.09 0.00 44.43 0.86
6939 7257 1.098050 GCTGAATTTCAGGCGACCAT 58.902 50.000 24.09 0.00 44.43 3.55
6940 7258 0.250684 TGCTGAATTTCAGGCGACCA 60.251 50.000 24.09 12.49 44.43 4.02
6941 7259 1.098050 ATGCTGAATTTCAGGCGACC 58.902 50.000 24.09 10.34 44.43 4.79
6942 7260 2.927553 AATGCTGAATTTCAGGCGAC 57.072 45.000 24.09 10.65 44.43 5.19
6943 7261 3.255395 TCAAAATGCTGAATTTCAGGCGA 59.745 39.130 24.09 8.93 44.43 5.54
6944 7262 3.577667 TCAAAATGCTGAATTTCAGGCG 58.422 40.909 24.09 4.44 44.43 5.52
6945 7263 4.992951 ACTTCAAAATGCTGAATTTCAGGC 59.007 37.500 24.09 17.29 44.43 4.85
6946 7264 6.702723 TCAACTTCAAAATGCTGAATTTCAGG 59.297 34.615 24.09 9.45 44.43 3.86
6947 7265 7.703298 TCAACTTCAAAATGCTGAATTTCAG 57.297 32.000 19.92 19.92 46.90 3.02
6972 7314 8.989980 GCAGTACTCTTCTTGTTTATGTTAACT 58.010 33.333 7.22 0.00 0.00 2.24
7069 7415 2.674462 GCTACCCGTGAAGGAGAAGAAC 60.674 54.545 0.00 0.00 45.00 3.01
7087 7433 1.019278 CGGCGAAGGAAGCTTTGCTA 61.019 55.000 0.00 0.00 41.98 3.49
7105 7451 3.612860 CACCGTAGAAATTCAAGTCTCCG 59.387 47.826 0.00 0.00 0.00 4.63
7140 7486 5.752650 TGCTGAAGAAGGATCAAATGAGAT 58.247 37.500 0.00 0.00 0.00 2.75
7141 7487 5.046087 TCTGCTGAAGAAGGATCAAATGAGA 60.046 40.000 0.00 0.00 29.54 3.27
7142 7488 5.183969 TCTGCTGAAGAAGGATCAAATGAG 58.816 41.667 0.00 0.00 29.54 2.90
7143 7489 5.169992 TCTGCTGAAGAAGGATCAAATGA 57.830 39.130 0.00 0.00 29.54 2.57
7144 7490 6.452494 AATCTGCTGAAGAAGGATCAAATG 57.548 37.500 0.00 0.00 38.79 2.32
7145 7491 7.282675 CAGTAATCTGCTGAAGAAGGATCAAAT 59.717 37.037 0.00 0.00 38.79 2.32
7146 7492 6.596888 CAGTAATCTGCTGAAGAAGGATCAAA 59.403 38.462 0.00 0.00 38.79 2.69
7147 7493 6.070596 TCAGTAATCTGCTGAAGAAGGATCAA 60.071 38.462 0.00 0.00 39.70 2.57
7149 7495 5.752955 GTCAGTAATCTGCTGAAGAAGGATC 59.247 44.000 0.00 0.00 43.57 3.36
7158 7504 5.939764 ATTGTAGGTCAGTAATCTGCTGA 57.060 39.130 0.00 0.00 41.10 4.26
7166 7514 8.758829 AGATGTGATTGTATTGTAGGTCAGTAA 58.241 33.333 0.00 0.00 0.00 2.24
7170 7518 6.348498 CCAGATGTGATTGTATTGTAGGTCA 58.652 40.000 0.00 0.00 0.00 4.02
7171 7519 5.760253 CCCAGATGTGATTGTATTGTAGGTC 59.240 44.000 0.00 0.00 0.00 3.85
7172 7520 5.684704 CCCAGATGTGATTGTATTGTAGGT 58.315 41.667 0.00 0.00 0.00 3.08
7173 7521 4.516698 GCCCAGATGTGATTGTATTGTAGG 59.483 45.833 0.00 0.00 0.00 3.18
7174 7522 5.125356 TGCCCAGATGTGATTGTATTGTAG 58.875 41.667 0.00 0.00 0.00 2.74
7175 7523 5.109500 TGCCCAGATGTGATTGTATTGTA 57.891 39.130 0.00 0.00 0.00 2.41
7176 7524 3.966979 TGCCCAGATGTGATTGTATTGT 58.033 40.909 0.00 0.00 0.00 2.71
7177 7525 6.263842 ACTTATGCCCAGATGTGATTGTATTG 59.736 38.462 0.00 0.00 0.00 1.90
7178 7526 6.367983 ACTTATGCCCAGATGTGATTGTATT 58.632 36.000 0.00 0.00 0.00 1.89
7179 7527 5.945310 ACTTATGCCCAGATGTGATTGTAT 58.055 37.500 0.00 0.00 0.00 2.29
7182 7530 6.889301 ATTACTTATGCCCAGATGTGATTG 57.111 37.500 0.00 0.00 0.00 2.67
7184 7532 7.998383 TGTTAATTACTTATGCCCAGATGTGAT 59.002 33.333 0.00 0.00 0.00 3.06
7187 7535 6.260050 CGTGTTAATTACTTATGCCCAGATGT 59.740 38.462 0.00 0.00 0.00 3.06
7198 7546 9.669887 ATCCATGTTTACCGTGTTAATTACTTA 57.330 29.630 0.00 0.00 0.00 2.24
7199 7547 7.982761 TCCATGTTTACCGTGTTAATTACTT 57.017 32.000 0.00 0.00 0.00 2.24
7200 7548 7.414762 GCATCCATGTTTACCGTGTTAATTACT 60.415 37.037 0.00 0.00 0.00 2.24
7201 7549 6.689669 GCATCCATGTTTACCGTGTTAATTAC 59.310 38.462 0.00 0.00 0.00 1.89
7205 7553 3.125487 CGCATCCATGTTTACCGTGTTAA 59.875 43.478 0.00 0.00 0.00 2.01
7351 7703 6.601613 TGGGTTTATTTCCACATACATGAGTC 59.398 38.462 0.00 0.00 0.00 3.36
7458 7942 9.760077 TCGTCTAATCTGGGATTTTCTTATTAC 57.240 33.333 0.00 0.00 0.00 1.89
7496 7984 2.163010 ACAAATACATGCTCTGCTGTGC 59.837 45.455 10.33 10.33 0.00 4.57
7502 7992 4.572389 GTCCCTGTACAAATACATGCTCTG 59.428 45.833 0.00 0.00 40.57 3.35
7531 8021 3.312146 CGAGCCATTGCATGTACACATTA 59.688 43.478 0.00 0.00 41.13 1.90
7553 8043 6.128200 TGCAAGTTCAGTGACAATGTGATATC 60.128 38.462 2.39 0.00 0.00 1.63
7607 8097 2.501128 GCCGCTCAGTCATAGCCA 59.499 61.111 0.00 0.00 36.60 4.75
7623 8113 0.881118 TTGAACTTTGATCGGCAGGC 59.119 50.000 0.00 0.00 0.00 4.85
7625 8115 3.003689 ACTGTTTGAACTTTGATCGGCAG 59.996 43.478 0.00 0.00 0.00 4.85
7626 8116 2.948979 ACTGTTTGAACTTTGATCGGCA 59.051 40.909 0.00 0.00 0.00 5.69
7628 8118 3.363970 CCGACTGTTTGAACTTTGATCGG 60.364 47.826 0.00 0.00 40.44 4.18
7629 8119 3.799035 CCGACTGTTTGAACTTTGATCG 58.201 45.455 0.00 0.00 0.00 3.69
7630 8120 3.555518 GCCGACTGTTTGAACTTTGATC 58.444 45.455 0.00 0.00 0.00 2.92
7631 8121 2.032030 CGCCGACTGTTTGAACTTTGAT 60.032 45.455 0.00 0.00 0.00 2.57
7632 8122 1.329292 CGCCGACTGTTTGAACTTTGA 59.671 47.619 0.00 0.00 0.00 2.69
7633 8123 1.329292 TCGCCGACTGTTTGAACTTTG 59.671 47.619 0.00 0.00 0.00 2.77
7634 8124 1.329599 GTCGCCGACTGTTTGAACTTT 59.670 47.619 10.56 0.00 0.00 2.66
7635 8125 0.935196 GTCGCCGACTGTTTGAACTT 59.065 50.000 10.56 0.00 0.00 2.66
7636 8126 0.179094 TGTCGCCGACTGTTTGAACT 60.179 50.000 19.12 0.00 33.15 3.01
7637 8127 0.865769 ATGTCGCCGACTGTTTGAAC 59.134 50.000 19.12 0.00 33.15 3.18
7638 8128 1.144969 GATGTCGCCGACTGTTTGAA 58.855 50.000 19.12 0.00 33.15 2.69
7639 8129 1.006825 CGATGTCGCCGACTGTTTGA 61.007 55.000 19.12 0.00 33.15 2.69
7640 8130 1.416049 CGATGTCGCCGACTGTTTG 59.584 57.895 19.12 3.77 33.15 2.93
7641 8131 1.736645 CCGATGTCGCCGACTGTTT 60.737 57.895 19.12 0.53 38.18 2.83
7642 8132 2.126071 CCGATGTCGCCGACTGTT 60.126 61.111 19.12 3.17 38.18 3.16
7662 8152 2.114411 GCCTCAAAACCCCGGTGA 59.886 61.111 0.00 0.00 0.00 4.02
7803 8330 0.407528 TGCTCCAGGGTTATTTGCCA 59.592 50.000 0.00 0.00 0.00 4.92
7811 8338 4.228210 TCTTAGATGATTTGCTCCAGGGTT 59.772 41.667 0.00 0.00 0.00 4.11
7812 8339 3.782523 TCTTAGATGATTTGCTCCAGGGT 59.217 43.478 0.00 0.00 0.00 4.34
7813 8340 4.133078 GTCTTAGATGATTTGCTCCAGGG 58.867 47.826 0.00 0.00 0.00 4.45
7814 8341 4.133078 GGTCTTAGATGATTTGCTCCAGG 58.867 47.826 0.00 0.00 0.00 4.45
7815 8342 4.774124 TGGTCTTAGATGATTTGCTCCAG 58.226 43.478 0.00 0.00 0.00 3.86
7816 8343 4.842531 TGGTCTTAGATGATTTGCTCCA 57.157 40.909 0.00 0.00 0.00 3.86
7817 8344 5.128919 ACATGGTCTTAGATGATTTGCTCC 58.871 41.667 0.00 0.00 0.00 4.70
7818 8345 6.690194 AACATGGTCTTAGATGATTTGCTC 57.310 37.500 0.00 0.00 0.00 4.26
7819 8346 6.127535 CCAAACATGGTCTTAGATGATTTGCT 60.128 38.462 0.00 0.00 0.00 3.91
7820 8347 6.038356 CCAAACATGGTCTTAGATGATTTGC 58.962 40.000 0.00 0.00 0.00 3.68
7821 8348 7.161773 ACCAAACATGGTCTTAGATGATTTG 57.838 36.000 0.00 0.00 37.74 2.32
7822 8349 8.877864 TTACCAAACATGGTCTTAGATGATTT 57.122 30.769 3.33 0.00 42.99 2.17
7823 8350 9.125026 GATTACCAAACATGGTCTTAGATGATT 57.875 33.333 3.33 0.00 42.99 2.57
7824 8351 7.721399 GGATTACCAAACATGGTCTTAGATGAT 59.279 37.037 3.33 0.00 42.99 2.45
7825 8352 7.054124 GGATTACCAAACATGGTCTTAGATGA 58.946 38.462 3.33 0.00 42.99 2.92
7926 8459 0.106708 GGTGTCACTCTGCTCCACAA 59.893 55.000 2.35 0.00 0.00 3.33
7939 8472 0.988832 AAGATTTAGGCCCGGTGTCA 59.011 50.000 0.00 0.00 0.00 3.58
7945 8478 3.809832 CACACTATCAAGATTTAGGCCCG 59.190 47.826 0.00 0.00 0.00 6.13
7959 8497 6.593978 CGCTTAGATTATTTGCCACACTATC 58.406 40.000 0.00 0.00 0.00 2.08
7981 8519 1.342819 AGGTATCATCAGAGAAGGCGC 59.657 52.381 0.00 0.00 0.00 6.53
7984 8522 6.933521 CCATGTTTAGGTATCATCAGAGAAGG 59.066 42.308 0.00 0.00 0.00 3.46
7991 8529 5.725551 AACCCCATGTTTAGGTATCATCA 57.274 39.130 0.00 0.00 31.47 3.07
7993 8531 6.059484 CGTTAACCCCATGTTTAGGTATCAT 58.941 40.000 0.00 0.00 38.42 2.45
8007 8545 2.372504 TGAACATCTTCCGTTAACCCCA 59.627 45.455 0.00 0.00 0.00 4.96
8044 8582 5.890985 TCTTCCATTGTTTTCTGAAAGGTCA 59.109 36.000 2.75 2.53 0.00 4.02
8102 8645 5.549742 TTTTTGGATGCCTCAGTTTGATT 57.450 34.783 0.00 0.00 0.00 2.57
8262 8806 3.242478 TGTCGTTTTACCAAAGTCTTGCG 60.242 43.478 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.