Multiple sequence alignment - TraesCS2A01G477000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G477000 chr2A 100.000 2594 0 0 1 2594 716423886 716426479 0.000000e+00 4791.0
1 TraesCS2A01G477000 chr2A 99.343 2283 13 2 1 2282 716300587 716302868 0.000000e+00 4132.0
2 TraesCS2A01G477000 chr2A 99.168 2285 15 3 1 2282 716340353 716342636 0.000000e+00 4111.0
3 TraesCS2A01G477000 chr2A 99.124 2283 19 1 1 2282 716392836 716395118 0.000000e+00 4104.0
4 TraesCS2A01G477000 chr2A 99.791 1435 3 0 163 1597 716252206 716253640 0.000000e+00 2634.0
5 TraesCS2A01G477000 chr2A 89.565 1380 107 24 693 2060 716247793 716249147 0.000000e+00 1716.0
6 TraesCS2A01G477000 chr2A 98.830 684 8 0 1599 2282 716254127 716254810 0.000000e+00 1219.0
7 TraesCS2A01G477000 chr2A 81.509 265 49 0 2306 2570 754565870 754565606 4.350000e-53 219.0
8 TraesCS2A01G477000 chr2A 83.761 234 24 12 402 628 716247557 716247783 2.620000e-50 209.0
9 TraesCS2A01G477000 chr2B 88.683 1723 145 26 578 2282 695683961 695685651 0.000000e+00 2056.0
10 TraesCS2A01G477000 chr2B 90.056 1438 101 21 402 1830 695731829 695733233 0.000000e+00 1825.0
11 TraesCS2A01G477000 chr2B 89.383 1281 87 26 563 1828 695692643 695693889 0.000000e+00 1567.0
12 TraesCS2A01G477000 chr2B 86.529 1455 107 35 413 1829 695688186 695689589 0.000000e+00 1519.0
13 TraesCS2A01G477000 chr2B 85.375 253 28 7 149 400 403120088 403120332 1.190000e-63 254.0
14 TraesCS2A01G477000 chr2B 87.324 71 9 0 1913 1983 695733245 695733315 5.950000e-12 82.4
15 TraesCS2A01G477000 chr2D 90.026 762 54 11 492 1235 578875148 578875905 0.000000e+00 966.0
16 TraesCS2A01G477000 chr2D 85.603 257 25 10 149 400 335144996 335145245 2.560000e-65 259.0
17 TraesCS2A01G477000 chr2D 88.732 71 8 0 1913 1983 578876680 578876750 1.280000e-13 87.9
18 TraesCS2A01G477000 chr7A 87.952 249 30 0 2306 2554 161215853 161215605 7.020000e-76 294.0
19 TraesCS2A01G477000 chr7A 81.315 289 54 0 2306 2594 69564691 69564403 4.320000e-58 235.0
20 TraesCS2A01G477000 chr7A 80.969 289 55 0 2306 2594 69600539 69600251 2.010000e-56 230.0
21 TraesCS2A01G477000 chr7A 80.328 244 48 0 2306 2549 733748925 733749168 4.410000e-43 185.0
22 TraesCS2A01G477000 chr3D 87.402 254 27 5 149 400 30369140 30368890 1.170000e-73 287.0
23 TraesCS2A01G477000 chr3D 82.099 162 26 3 2085 2244 528611687 528611527 4.500000e-28 135.0
24 TraesCS2A01G477000 chr5D 85.271 258 31 4 149 399 113396167 113396424 2.560000e-65 259.0
25 TraesCS2A01G477000 chr6D 84.556 259 34 4 149 402 368114176 368114433 4.290000e-63 252.0
26 TraesCS2A01G477000 chr6D 84.354 147 21 2 2099 2244 147691282 147691137 2.690000e-30 143.0
27 TraesCS2A01G477000 chr6D 82.432 148 23 3 2099 2244 428647310 428647456 2.710000e-25 126.0
28 TraesCS2A01G477000 chr6D 80.864 162 27 4 2085 2244 65763382 65763541 9.750000e-25 124.0
29 TraesCS2A01G477000 chr3A 82.699 289 37 1 2306 2594 710896743 710897018 7.170000e-61 244.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G477000 chr2A 716423886 716426479 2593 False 4791.00 4791 100.000000 1 2594 1 chr2A.!!$F4 2593
1 TraesCS2A01G477000 chr2A 716300587 716302868 2281 False 4132.00 4132 99.343000 1 2282 1 chr2A.!!$F1 2281
2 TraesCS2A01G477000 chr2A 716340353 716342636 2283 False 4111.00 4111 99.168000 1 2282 1 chr2A.!!$F2 2281
3 TraesCS2A01G477000 chr2A 716392836 716395118 2282 False 4104.00 4104 99.124000 1 2282 1 chr2A.!!$F3 2281
4 TraesCS2A01G477000 chr2A 716247557 716254810 7253 False 1444.50 2634 92.986750 163 2282 4 chr2A.!!$F5 2119
5 TraesCS2A01G477000 chr2B 695683961 695693889 9928 False 1714.00 2056 88.198333 413 2282 3 chr2B.!!$F2 1869
6 TraesCS2A01G477000 chr2B 695731829 695733315 1486 False 953.70 1825 88.690000 402 1983 2 chr2B.!!$F3 1581
7 TraesCS2A01G477000 chr2D 578875148 578876750 1602 False 526.95 966 89.379000 492 1983 2 chr2D.!!$F2 1491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1480 10621 1.888215 AGTGGACTCGACGTACAAGA 58.112 50.0 2.07 0.0 38.46 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2511 14897 0.032952 CCTCCGAAACCTTGTCGTCA 59.967 55.0 0.0 0.0 36.77 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1480 10621 1.888215 AGTGGACTCGACGTACAAGA 58.112 50.000 2.07 0.00 38.46 3.02
1887 11532 9.093970 GTTTTAGTTTTGACCTAAAAGCACAAT 57.906 29.630 5.78 0.00 42.15 2.71
1924 11569 4.096681 GGAGGGAGTTTTTGGATTTGGAT 58.903 43.478 0.00 0.00 0.00 3.41
2103 14067 5.880054 TGCTACTCCATTTGCTTCTAAAC 57.120 39.130 0.00 0.00 0.00 2.01
2282 14668 7.640240 CGTTTTCTCTTTTCAAGTTGTAAGAGG 59.360 37.037 29.19 18.88 42.33 3.69
2283 14669 8.674607 GTTTTCTCTTTTCAAGTTGTAAGAGGA 58.325 33.333 29.19 24.53 42.33 3.71
2285 14671 8.801882 TTCTCTTTTCAAGTTGTAAGAGGAAA 57.198 30.769 29.19 21.57 42.33 3.13
2287 14673 7.011109 TCTCTTTTCAAGTTGTAAGAGGAAACG 59.989 37.037 29.19 16.51 42.33 3.60
2288 14674 6.596497 TCTTTTCAAGTTGTAAGAGGAAACGT 59.404 34.615 14.82 0.00 0.00 3.99
2289 14675 5.728351 TTCAAGTTGTAAGAGGAAACGTG 57.272 39.130 2.11 0.00 35.48 4.49
2290 14676 4.124238 TCAAGTTGTAAGAGGAAACGTGG 58.876 43.478 2.11 0.00 35.08 4.94
2291 14677 3.121738 AGTTGTAAGAGGAAACGTGGG 57.878 47.619 0.00 0.00 0.00 4.61
2292 14678 2.701951 AGTTGTAAGAGGAAACGTGGGA 59.298 45.455 0.00 0.00 0.00 4.37
2294 14680 1.621814 TGTAAGAGGAAACGTGGGAGG 59.378 52.381 0.00 0.00 0.00 4.30
2295 14681 1.622312 GTAAGAGGAAACGTGGGAGGT 59.378 52.381 0.00 0.00 0.00 3.85
2298 14684 1.831736 AGAGGAAACGTGGGAGGTATG 59.168 52.381 0.00 0.00 0.00 2.39
2299 14685 0.909623 AGGAAACGTGGGAGGTATGG 59.090 55.000 0.00 0.00 0.00 2.74
2300 14686 0.746923 GGAAACGTGGGAGGTATGGC 60.747 60.000 0.00 0.00 0.00 4.40
2301 14687 0.252197 GAAACGTGGGAGGTATGGCT 59.748 55.000 0.00 0.00 0.00 4.75
2302 14688 0.035439 AAACGTGGGAGGTATGGCTG 60.035 55.000 0.00 0.00 0.00 4.85
2303 14689 2.203070 CGTGGGAGGTATGGCTGC 60.203 66.667 0.00 0.00 0.00 5.25
2305 14691 1.302949 GTGGGAGGTATGGCTGCAA 59.697 57.895 0.50 0.00 0.00 4.08
2306 14692 0.749454 GTGGGAGGTATGGCTGCAAG 60.749 60.000 0.50 0.00 0.00 4.01
2307 14693 1.207488 TGGGAGGTATGGCTGCAAGT 61.207 55.000 0.50 0.00 35.30 3.16
2309 14695 0.464554 GGAGGTATGGCTGCAAGTCC 60.465 60.000 0.50 0.00 38.23 3.85
2310 14696 0.253044 GAGGTATGGCTGCAAGTCCA 59.747 55.000 0.50 4.71 38.23 4.02
2311 14697 0.698238 AGGTATGGCTGCAAGTCCAA 59.302 50.000 0.50 0.00 38.23 3.53
2312 14698 0.811281 GGTATGGCTGCAAGTCCAAC 59.189 55.000 0.50 6.24 38.23 3.77
2314 14700 0.676466 TATGGCTGCAAGTCCAACGG 60.676 55.000 0.50 0.00 38.23 4.44
2316 14702 2.980233 GCTGCAAGTCCAACGGCT 60.980 61.111 0.00 0.00 35.30 5.52
2318 14704 1.302033 CTGCAAGTCCAACGGCTCT 60.302 57.895 0.00 0.00 0.00 4.09
2319 14705 1.572085 CTGCAAGTCCAACGGCTCTG 61.572 60.000 0.00 0.00 0.00 3.35
2320 14706 2.328099 GCAAGTCCAACGGCTCTGG 61.328 63.158 0.00 0.00 35.05 3.86
2321 14707 1.071471 CAAGTCCAACGGCTCTGGT 59.929 57.895 2.14 0.00 35.30 4.00
2323 14709 0.320697 AAGTCCAACGGCTCTGGTAC 59.679 55.000 2.14 0.00 35.30 3.34
2324 14710 1.445582 GTCCAACGGCTCTGGTACG 60.446 63.158 2.14 0.00 35.30 3.67
2325 14711 2.125673 CCAACGGCTCTGGTACGG 60.126 66.667 0.00 0.00 0.00 4.02
2326 14712 2.642254 CCAACGGCTCTGGTACGGA 61.642 63.158 0.00 0.00 44.24 4.69
2328 14714 1.605738 AACGGCTCTGGTACGGACT 60.606 57.895 0.00 0.00 39.80 3.85
2329 14715 1.874345 AACGGCTCTGGTACGGACTG 61.874 60.000 0.00 0.00 39.80 3.51
2330 14716 2.893398 GGCTCTGGTACGGACTGG 59.107 66.667 0.00 0.00 39.80 4.00
2331 14717 2.184579 GCTCTGGTACGGACTGGC 59.815 66.667 0.00 0.00 39.80 4.85
2333 14719 2.034532 TCTGGTACGGACTGGCGA 59.965 61.111 0.00 0.00 39.80 5.54
2334 14720 1.379443 TCTGGTACGGACTGGCGAT 60.379 57.895 0.00 0.00 39.80 4.58
2335 14721 0.968901 TCTGGTACGGACTGGCGATT 60.969 55.000 0.00 0.00 39.80 3.34
2336 14722 0.527817 CTGGTACGGACTGGCGATTC 60.528 60.000 0.00 0.00 36.31 2.52
2337 14723 1.588139 GGTACGGACTGGCGATTCG 60.588 63.158 0.00 0.62 0.00 3.34
2338 14724 1.588139 GTACGGACTGGCGATTCGG 60.588 63.158 8.34 0.00 0.00 4.30
2339 14725 2.777972 TACGGACTGGCGATTCGGG 61.778 63.158 8.34 0.00 0.00 5.14
2340 14726 4.143333 CGGACTGGCGATTCGGGT 62.143 66.667 8.34 0.00 0.00 5.28
2342 14728 2.511600 GACTGGCGATTCGGGTGG 60.512 66.667 8.34 0.00 0.00 4.61
2343 14729 4.778143 ACTGGCGATTCGGGTGGC 62.778 66.667 8.34 0.00 0.00 5.01
2441 14827 3.749064 GGTGCGCGAGTCTCCAGA 61.749 66.667 12.10 0.00 0.00 3.86
2442 14828 2.202544 GTGCGCGAGTCTCCAGAG 60.203 66.667 12.10 0.00 0.00 3.35
2444 14830 3.444805 GCGCGAGTCTCCAGAGGT 61.445 66.667 12.10 0.00 0.00 3.85
2445 14831 2.487428 CGCGAGTCTCCAGAGGTG 59.513 66.667 0.00 0.00 0.00 4.00
2446 14832 2.888863 GCGAGTCTCCAGAGGTGG 59.111 66.667 0.00 0.00 46.63 4.61
2447 14833 2.888863 CGAGTCTCCAGAGGTGGC 59.111 66.667 0.00 0.00 44.60 5.01
2448 14834 2.716017 CGAGTCTCCAGAGGTGGCC 61.716 68.421 0.00 0.00 44.60 5.36
2451 14837 1.197430 AGTCTCCAGAGGTGGCCTTG 61.197 60.000 3.32 0.00 44.60 3.61
2452 14838 1.920325 TCTCCAGAGGTGGCCTTGG 60.920 63.158 3.32 4.39 44.60 3.61
2489 14875 3.966543 CTGGGTGGGGAGCCGTTT 61.967 66.667 0.00 0.00 0.00 3.60
2490 14876 3.920093 CTGGGTGGGGAGCCGTTTC 62.920 68.421 0.00 0.00 0.00 2.78
2491 14877 3.647771 GGGTGGGGAGCCGTTTCT 61.648 66.667 0.00 0.00 0.00 2.52
2493 14879 2.359975 GTGGGGAGCCGTTTCTGG 60.360 66.667 0.00 0.00 0.00 3.86
2494 14880 3.646715 TGGGGAGCCGTTTCTGGG 61.647 66.667 0.00 0.00 0.00 4.45
2501 14887 2.747855 CCGTTTCTGGGCTCTGGC 60.748 66.667 0.00 0.00 37.82 4.85
2511 14897 3.300013 GCTCTGGCCGAGGTAAGT 58.700 61.111 21.05 0.00 40.25 2.24
2512 14898 1.153549 GCTCTGGCCGAGGTAAGTG 60.154 63.158 21.05 5.25 40.25 3.16
2513 14899 1.605058 GCTCTGGCCGAGGTAAGTGA 61.605 60.000 21.05 0.00 40.25 3.41
2514 14900 0.173708 CTCTGGCCGAGGTAAGTGAC 59.826 60.000 14.53 0.00 36.06 3.67
2515 14901 1.153823 CTGGCCGAGGTAAGTGACG 60.154 63.158 0.00 0.00 0.00 4.35
2516 14902 1.592400 CTGGCCGAGGTAAGTGACGA 61.592 60.000 0.00 0.00 0.00 4.20
2517 14903 1.153881 GGCCGAGGTAAGTGACGAC 60.154 63.158 0.00 0.00 0.00 4.34
2519 14905 0.038892 GCCGAGGTAAGTGACGACAA 60.039 55.000 0.00 0.00 0.00 3.18
2520 14906 1.978542 CCGAGGTAAGTGACGACAAG 58.021 55.000 0.00 0.00 0.00 3.16
2521 14907 1.402456 CCGAGGTAAGTGACGACAAGG 60.402 57.143 0.00 0.00 0.00 3.61
2522 14908 1.268899 CGAGGTAAGTGACGACAAGGT 59.731 52.381 0.00 0.00 0.00 3.50
2523 14909 2.288030 CGAGGTAAGTGACGACAAGGTT 60.288 50.000 0.00 0.00 0.00 3.50
2524 14910 3.725490 GAGGTAAGTGACGACAAGGTTT 58.275 45.455 0.00 0.00 0.00 3.27
2525 14911 3.725490 AGGTAAGTGACGACAAGGTTTC 58.275 45.455 0.00 0.00 0.00 2.78
2526 14912 2.473984 GGTAAGTGACGACAAGGTTTCG 59.526 50.000 0.00 0.00 42.36 3.46
2527 14913 1.578583 AAGTGACGACAAGGTTTCGG 58.421 50.000 0.00 0.00 40.92 4.30
2528 14914 0.748450 AGTGACGACAAGGTTTCGGA 59.252 50.000 0.00 0.00 40.92 4.55
2529 14915 1.137513 GTGACGACAAGGTTTCGGAG 58.862 55.000 0.00 0.00 40.92 4.63
2530 14916 0.032952 TGACGACAAGGTTTCGGAGG 59.967 55.000 0.00 0.00 40.92 4.30
2532 15386 2.380410 CGACAAGGTTTCGGAGGCG 61.380 63.158 0.00 0.00 32.66 5.52
2535 15389 1.741770 CAAGGTTTCGGAGGCGGAG 60.742 63.158 0.00 0.00 0.00 4.63
2536 15390 2.955881 AAGGTTTCGGAGGCGGAGG 61.956 63.158 0.00 0.00 0.00 4.30
2539 15393 2.036731 TTTCGGAGGCGGAGGAGA 59.963 61.111 0.00 0.00 0.00 3.71
2544 15398 1.456705 GGAGGCGGAGGAGAGTGAT 60.457 63.158 0.00 0.00 0.00 3.06
2545 15399 1.739049 GAGGCGGAGGAGAGTGATG 59.261 63.158 0.00 0.00 0.00 3.07
2548 15402 2.415010 CGGAGGAGAGTGATGGCG 59.585 66.667 0.00 0.00 0.00 5.69
2549 15403 2.418910 CGGAGGAGAGTGATGGCGT 61.419 63.158 0.00 0.00 0.00 5.68
2551 15405 1.142748 GAGGAGAGTGATGGCGTGG 59.857 63.158 0.00 0.00 0.00 4.94
2553 15407 2.581354 GAGAGTGATGGCGTGGCT 59.419 61.111 0.00 0.00 0.00 4.75
2554 15408 1.078848 GAGAGTGATGGCGTGGCTT 60.079 57.895 0.00 0.00 0.00 4.35
2555 15409 1.364626 GAGAGTGATGGCGTGGCTTG 61.365 60.000 0.00 0.00 0.00 4.01
2556 15410 2.360350 AGTGATGGCGTGGCTTGG 60.360 61.111 0.00 0.00 0.00 3.61
2568 15422 4.821589 GCTTGGCTCGTCGAGGGG 62.822 72.222 23.09 2.31 0.00 4.79
2569 15423 3.068691 CTTGGCTCGTCGAGGGGA 61.069 66.667 23.09 0.00 0.00 4.81
2570 15424 2.363795 TTGGCTCGTCGAGGGGAT 60.364 61.111 23.09 0.00 0.00 3.85
2571 15425 2.635229 CTTGGCTCGTCGAGGGGATG 62.635 65.000 23.09 0.00 0.00 3.51
2572 15426 4.593864 GGCTCGTCGAGGGGATGC 62.594 72.222 23.09 8.75 0.00 3.91
2573 15427 3.838271 GCTCGTCGAGGGGATGCA 61.838 66.667 23.09 0.00 0.00 3.96
2574 15428 2.415010 CTCGTCGAGGGGATGCAG 59.585 66.667 14.68 0.00 0.00 4.41
2577 15431 1.300465 CGTCGAGGGGATGCAGATG 60.300 63.158 0.00 0.00 0.00 2.90
2578 15432 1.738346 CGTCGAGGGGATGCAGATGA 61.738 60.000 0.00 0.00 0.00 2.92
2579 15433 0.249657 GTCGAGGGGATGCAGATGAC 60.250 60.000 0.00 0.00 0.00 3.06
2580 15434 1.300465 CGAGGGGATGCAGATGACG 60.300 63.158 0.00 0.00 0.00 4.35
2581 15435 1.070445 GAGGGGATGCAGATGACGG 59.930 63.158 0.00 0.00 0.00 4.79
2582 15436 1.690219 GAGGGGATGCAGATGACGGT 61.690 60.000 0.00 0.00 0.00 4.83
2583 15437 1.227674 GGGGATGCAGATGACGGTC 60.228 63.158 0.00 0.00 0.00 4.79
2585 15439 1.592669 GGATGCAGATGACGGTCGG 60.593 63.158 3.34 0.00 0.00 4.79
2586 15440 2.202932 ATGCAGATGACGGTCGGC 60.203 61.111 3.34 5.44 39.35 5.54
2587 15441 4.794439 TGCAGATGACGGTCGGCG 62.794 66.667 0.00 0.00 41.36 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1480 10621 4.790962 CTCCACGCCTGGCAGCAT 62.791 66.667 20.29 0.00 37.49 3.79
1887 11532 3.364549 TCCCTCCGTTCCGTAATTCTTA 58.635 45.455 0.00 0.00 0.00 2.10
1924 11569 5.221283 TGTGTAAGAGGTCGACACATAAACA 60.221 40.000 18.91 14.99 46.36 2.83
2282 14668 0.252197 AGCCATACCTCCCACGTTTC 59.748 55.000 0.00 0.00 0.00 2.78
2283 14669 0.035439 CAGCCATACCTCCCACGTTT 60.035 55.000 0.00 0.00 0.00 3.60
2285 14671 3.031417 GCAGCCATACCTCCCACGT 62.031 63.158 0.00 0.00 0.00 4.49
2287 14673 0.749454 CTTGCAGCCATACCTCCCAC 60.749 60.000 0.00 0.00 0.00 4.61
2288 14674 1.207488 ACTTGCAGCCATACCTCCCA 61.207 55.000 0.00 0.00 0.00 4.37
2289 14675 0.464554 GACTTGCAGCCATACCTCCC 60.465 60.000 0.00 0.00 0.00 4.30
2290 14676 0.464554 GGACTTGCAGCCATACCTCC 60.465 60.000 0.00 0.00 0.00 4.30
2291 14677 0.253044 TGGACTTGCAGCCATACCTC 59.747 55.000 1.37 0.00 0.00 3.85
2292 14678 0.698238 TTGGACTTGCAGCCATACCT 59.302 50.000 5.95 0.00 33.46 3.08
2294 14680 0.447801 CGTTGGACTTGCAGCCATAC 59.552 55.000 5.95 6.68 33.46 2.39
2295 14681 0.676466 CCGTTGGACTTGCAGCCATA 60.676 55.000 5.95 0.00 33.46 2.74
2298 14684 4.043200 GCCGTTGGACTTGCAGCC 62.043 66.667 0.00 0.00 0.00 4.85
2299 14685 2.970974 GAGCCGTTGGACTTGCAGC 61.971 63.158 0.00 0.00 0.00 5.25
2300 14686 1.302033 AGAGCCGTTGGACTTGCAG 60.302 57.895 0.00 0.00 0.00 4.41
2301 14687 1.597854 CAGAGCCGTTGGACTTGCA 60.598 57.895 0.00 0.00 0.00 4.08
2302 14688 2.328099 CCAGAGCCGTTGGACTTGC 61.328 63.158 0.00 0.00 37.96 4.01
2303 14689 0.320374 TACCAGAGCCGTTGGACTTG 59.680 55.000 5.81 0.00 39.08 3.16
2305 14691 1.874345 CGTACCAGAGCCGTTGGACT 61.874 60.000 5.81 0.00 39.08 3.85
2306 14692 1.445582 CGTACCAGAGCCGTTGGAC 60.446 63.158 5.81 0.33 39.08 4.02
2307 14693 2.642254 CCGTACCAGAGCCGTTGGA 61.642 63.158 5.81 0.00 39.08 3.53
2309 14695 1.445582 GTCCGTACCAGAGCCGTTG 60.446 63.158 0.00 0.00 0.00 4.10
2310 14696 1.605738 AGTCCGTACCAGAGCCGTT 60.606 57.895 0.00 0.00 0.00 4.44
2311 14697 2.035312 AGTCCGTACCAGAGCCGT 59.965 61.111 0.00 0.00 0.00 5.68
2312 14698 2.490217 CAGTCCGTACCAGAGCCG 59.510 66.667 0.00 0.00 0.00 5.52
2314 14700 2.184579 GCCAGTCCGTACCAGAGC 59.815 66.667 0.00 0.00 0.00 4.09
2316 14702 0.968901 AATCGCCAGTCCGTACCAGA 60.969 55.000 0.00 0.00 0.00 3.86
2318 14704 1.514087 GAATCGCCAGTCCGTACCA 59.486 57.895 0.00 0.00 0.00 3.25
2319 14705 1.588139 CGAATCGCCAGTCCGTACC 60.588 63.158 0.00 0.00 0.00 3.34
2320 14706 1.588139 CCGAATCGCCAGTCCGTAC 60.588 63.158 0.00 0.00 0.00 3.67
2321 14707 2.777972 CCCGAATCGCCAGTCCGTA 61.778 63.158 0.00 0.00 0.00 4.02
2323 14709 4.143333 ACCCGAATCGCCAGTCCG 62.143 66.667 0.00 0.00 0.00 4.79
2324 14710 2.511600 CACCCGAATCGCCAGTCC 60.512 66.667 0.00 0.00 0.00 3.85
2325 14711 2.511600 CCACCCGAATCGCCAGTC 60.512 66.667 0.00 0.00 0.00 3.51
2326 14712 4.778143 GCCACCCGAATCGCCAGT 62.778 66.667 0.00 0.00 0.00 4.00
2393 14779 4.838152 CCCGCACCATCGACCAGG 62.838 72.222 0.00 0.00 0.00 4.45
2424 14810 3.691744 CTCTGGAGACTCGCGCACC 62.692 68.421 8.75 0.00 0.00 5.01
2425 14811 2.202544 CTCTGGAGACTCGCGCAC 60.203 66.667 8.75 0.00 0.00 5.34
2426 14812 3.443925 CCTCTGGAGACTCGCGCA 61.444 66.667 8.75 0.00 0.00 6.09
2427 14813 3.444805 ACCTCTGGAGACTCGCGC 61.445 66.667 0.00 0.00 0.00 6.86
2428 14814 2.487428 CACCTCTGGAGACTCGCG 59.513 66.667 0.00 0.00 0.00 5.87
2429 14815 2.888863 CCACCTCTGGAGACTCGC 59.111 66.667 0.00 0.00 40.55 5.03
2430 14816 2.716017 GGCCACCTCTGGAGACTCG 61.716 68.421 0.00 0.00 40.55 4.18
2431 14817 0.907230 AAGGCCACCTCTGGAGACTC 60.907 60.000 5.01 0.00 40.55 3.36
2432 14818 1.159664 AAGGCCACCTCTGGAGACT 59.840 57.895 5.01 0.00 40.55 3.24
2433 14819 1.298014 CAAGGCCACCTCTGGAGAC 59.702 63.158 5.01 0.00 40.55 3.36
2434 14820 1.920325 CCAAGGCCACCTCTGGAGA 60.920 63.158 5.01 0.00 40.55 3.71
2436 14822 2.935481 CCCAAGGCCACCTCTGGA 60.935 66.667 5.01 0.00 40.55 3.86
2472 14858 3.920093 GAAACGGCTCCCCACCCAG 62.920 68.421 0.00 0.00 0.00 4.45
2476 14862 2.359975 CCAGAAACGGCTCCCCAC 60.360 66.667 0.00 0.00 0.00 4.61
2477 14863 3.646715 CCCAGAAACGGCTCCCCA 61.647 66.667 0.00 0.00 0.00 4.96
2494 14880 1.153549 CACTTACCTCGGCCAGAGC 60.154 63.158 16.29 0.00 45.54 4.09
2498 14884 1.604308 TCGTCACTTACCTCGGCCA 60.604 57.895 2.24 0.00 0.00 5.36
2499 14885 1.153881 GTCGTCACTTACCTCGGCC 60.154 63.158 0.00 0.00 0.00 6.13
2500 14886 0.038892 TTGTCGTCACTTACCTCGGC 60.039 55.000 0.00 0.00 0.00 5.54
2501 14887 1.402456 CCTTGTCGTCACTTACCTCGG 60.402 57.143 0.00 0.00 0.00 4.63
2502 14888 1.268899 ACCTTGTCGTCACTTACCTCG 59.731 52.381 0.00 0.00 0.00 4.63
2503 14889 3.382048 AACCTTGTCGTCACTTACCTC 57.618 47.619 0.00 0.00 0.00 3.85
2504 14890 3.725490 GAAACCTTGTCGTCACTTACCT 58.275 45.455 0.00 0.00 0.00 3.08
2505 14891 2.473984 CGAAACCTTGTCGTCACTTACC 59.526 50.000 0.00 0.00 33.80 2.85
2506 14892 2.473984 CCGAAACCTTGTCGTCACTTAC 59.526 50.000 0.00 0.00 36.77 2.34
2507 14893 2.361757 TCCGAAACCTTGTCGTCACTTA 59.638 45.455 0.00 0.00 36.77 2.24
2508 14894 1.137479 TCCGAAACCTTGTCGTCACTT 59.863 47.619 0.00 0.00 36.77 3.16
2509 14895 0.748450 TCCGAAACCTTGTCGTCACT 59.252 50.000 0.00 0.00 36.77 3.41
2510 14896 1.137513 CTCCGAAACCTTGTCGTCAC 58.862 55.000 0.00 0.00 36.77 3.67
2511 14897 0.032952 CCTCCGAAACCTTGTCGTCA 59.967 55.000 0.00 0.00 36.77 4.35
2512 14898 1.289800 GCCTCCGAAACCTTGTCGTC 61.290 60.000 0.00 0.00 36.77 4.20
2513 14899 1.301479 GCCTCCGAAACCTTGTCGT 60.301 57.895 0.00 0.00 36.77 4.34
2514 14900 2.380410 CGCCTCCGAAACCTTGTCG 61.380 63.158 0.00 0.00 38.24 4.35
2515 14901 2.033194 CCGCCTCCGAAACCTTGTC 61.033 63.158 0.00 0.00 36.29 3.18
2516 14902 2.032071 CCGCCTCCGAAACCTTGT 59.968 61.111 0.00 0.00 36.29 3.16
2517 14903 1.741770 CTCCGCCTCCGAAACCTTG 60.742 63.158 0.00 0.00 36.29 3.61
2519 14905 3.391382 CCTCCGCCTCCGAAACCT 61.391 66.667 0.00 0.00 36.29 3.50
2520 14906 3.372554 CTCCTCCGCCTCCGAAACC 62.373 68.421 0.00 0.00 36.29 3.27
2521 14907 2.184579 CTCCTCCGCCTCCGAAAC 59.815 66.667 0.00 0.00 36.29 2.78
2522 14908 2.036731 TCTCCTCCGCCTCCGAAA 59.963 61.111 0.00 0.00 36.29 3.46
2523 14909 2.440430 CTCTCCTCCGCCTCCGAA 60.440 66.667 0.00 0.00 36.29 4.30
2524 14910 3.729489 ACTCTCCTCCGCCTCCGA 61.729 66.667 0.00 0.00 36.29 4.55
2525 14911 3.522731 CACTCTCCTCCGCCTCCG 61.523 72.222 0.00 0.00 0.00 4.63
2526 14912 1.456705 ATCACTCTCCTCCGCCTCC 60.457 63.158 0.00 0.00 0.00 4.30
2527 14913 1.739049 CATCACTCTCCTCCGCCTC 59.261 63.158 0.00 0.00 0.00 4.70
2528 14914 1.760086 CCATCACTCTCCTCCGCCT 60.760 63.158 0.00 0.00 0.00 5.52
2529 14915 2.818132 CCATCACTCTCCTCCGCC 59.182 66.667 0.00 0.00 0.00 6.13
2530 14916 2.107953 GCCATCACTCTCCTCCGC 59.892 66.667 0.00 0.00 0.00 5.54
2532 15386 1.142748 CACGCCATCACTCTCCTCC 59.857 63.158 0.00 0.00 0.00 4.30
2535 15389 2.512515 GCCACGCCATCACTCTCC 60.513 66.667 0.00 0.00 0.00 3.71
2536 15390 1.078848 AAGCCACGCCATCACTCTC 60.079 57.895 0.00 0.00 0.00 3.20
2539 15393 2.360350 CCAAGCCACGCCATCACT 60.360 61.111 0.00 0.00 0.00 3.41
2548 15402 2.811317 CTCGACGAGCCAAGCCAC 60.811 66.667 12.67 0.00 0.00 5.01
2549 15403 4.069232 CCTCGACGAGCCAAGCCA 62.069 66.667 19.55 0.00 0.00 4.75
2551 15405 4.821589 CCCCTCGACGAGCCAAGC 62.822 72.222 19.55 0.00 0.00 4.01
2553 15407 2.363795 ATCCCCTCGACGAGCCAA 60.364 61.111 19.55 6.55 0.00 4.52
2554 15408 3.147595 CATCCCCTCGACGAGCCA 61.148 66.667 19.55 5.28 0.00 4.75
2555 15409 4.593864 GCATCCCCTCGACGAGCC 62.594 72.222 19.55 0.00 0.00 4.70
2556 15410 3.781770 CTGCATCCCCTCGACGAGC 62.782 68.421 19.55 8.41 0.00 5.03
2568 15422 2.240500 GCCGACCGTCATCTGCATC 61.241 63.158 0.00 0.00 0.00 3.91
2569 15423 2.202932 GCCGACCGTCATCTGCAT 60.203 61.111 0.00 0.00 0.00 3.96
2570 15424 4.794439 CGCCGACCGTCATCTGCA 62.794 66.667 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.