Multiple sequence alignment - TraesCS2A01G474700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G474700 chr2A 100.000 3401 0 0 1 3401 715805792 715809192 0.000000e+00 6281
1 TraesCS2A01G474700 chr2A 89.495 1466 146 5 949 2414 667959410 667960867 0.000000e+00 1847
2 TraesCS2A01G474700 chr2A 80.935 1390 242 19 1025 2402 667964298 667965676 0.000000e+00 1077
3 TraesCS2A01G474700 chr2B 94.393 2051 85 11 446 2476 694943515 694945555 0.000000e+00 3123
4 TraesCS2A01G474700 chr2B 90.808 1436 123 9 990 2421 615788432 615789862 0.000000e+00 1912
5 TraesCS2A01G474700 chr2B 90.669 1436 134 0 979 2414 615736000 615737435 0.000000e+00 1910
6 TraesCS2A01G474700 chr2B 87.132 645 66 13 2770 3401 694946864 694947504 0.000000e+00 715
7 TraesCS2A01G474700 chr2B 92.364 275 13 4 2497 2770 694945543 694945810 5.320000e-103 385
8 TraesCS2A01G474700 chr2D 95.509 1670 58 4 807 2476 577609567 577607915 0.000000e+00 2652
9 TraesCS2A01G474700 chr2D 90.714 1443 133 1 979 2421 522689344 522690785 0.000000e+00 1921
10 TraesCS2A01G474700 chr2D 89.958 1434 137 5 991 2421 522749233 522750662 0.000000e+00 1844
11 TraesCS2A01G474700 chr2D 92.873 912 49 9 2497 3401 577607927 577607025 0.000000e+00 1310
12 TraesCS2A01G474700 chr2D 82.759 1218 191 16 1025 2232 522752622 522753830 0.000000e+00 1068
13 TraesCS2A01G474700 chr2D 79.642 1395 255 25 1028 2403 522629724 522631108 0.000000e+00 976
14 TraesCS2A01G474700 chr2D 96.259 294 11 0 5 298 561359700 561359407 1.840000e-132 483
15 TraesCS2A01G474700 chr2D 89.680 281 18 5 448 717 577609894 577609614 6.980000e-92 348
16 TraesCS2A01G474700 chr5D 90.773 1333 90 12 1028 2348 551892001 551890690 0.000000e+00 1749
17 TraesCS2A01G474700 chr5D 94.576 295 16 0 4 298 128492237 128491943 1.110000e-124 457
18 TraesCS2A01G474700 chr5D 83.784 111 11 4 567 675 551918468 551918363 7.770000e-17 99
19 TraesCS2A01G474700 chr6A 98.013 302 6 0 1 302 213862029 213862330 3.010000e-145 525
20 TraesCS2A01G474700 chr6A 93.289 298 17 3 4 298 560792746 560792449 1.450000e-118 436
21 TraesCS2A01G474700 chr4A 97.993 299 5 1 1 298 553401507 553401805 5.030000e-143 518
22 TraesCS2A01G474700 chr4D 93.667 300 17 2 1 298 249370941 249371240 6.690000e-122 448
23 TraesCS2A01G474700 chr4D 92.977 299 20 1 1 298 507766476 507766774 5.210000e-118 435
24 TraesCS2A01G474700 chr6B 93.069 303 17 4 4 303 231536944 231536643 1.120000e-119 440
25 TraesCS2A01G474700 chr6B 88.148 135 10 3 324 452 189295606 189295740 4.540000e-34 156
26 TraesCS2A01G474700 chr3D 93.220 295 19 1 4 297 384579504 384579210 1.870000e-117 433
27 TraesCS2A01G474700 chr5B 87.302 252 30 2 1415 1665 700201352 700201102 1.540000e-73 287


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G474700 chr2A 715805792 715809192 3400 False 6281.000000 6281 100.000000 1 3401 1 chr2A.!!$F1 3400
1 TraesCS2A01G474700 chr2A 667959410 667965676 6266 False 1462.000000 1847 85.215000 949 2414 2 chr2A.!!$F2 1465
2 TraesCS2A01G474700 chr2B 615788432 615789862 1430 False 1912.000000 1912 90.808000 990 2421 1 chr2B.!!$F2 1431
3 TraesCS2A01G474700 chr2B 615736000 615737435 1435 False 1910.000000 1910 90.669000 979 2414 1 chr2B.!!$F1 1435
4 TraesCS2A01G474700 chr2B 694943515 694947504 3989 False 1407.666667 3123 91.296333 446 3401 3 chr2B.!!$F3 2955
5 TraesCS2A01G474700 chr2D 522689344 522690785 1441 False 1921.000000 1921 90.714000 979 2421 1 chr2D.!!$F2 1442
6 TraesCS2A01G474700 chr2D 522749233 522753830 4597 False 1456.000000 1844 86.358500 991 2421 2 chr2D.!!$F3 1430
7 TraesCS2A01G474700 chr2D 577607025 577609894 2869 True 1436.666667 2652 92.687333 448 3401 3 chr2D.!!$R2 2953
8 TraesCS2A01G474700 chr2D 522629724 522631108 1384 False 976.000000 976 79.642000 1028 2403 1 chr2D.!!$F1 1375
9 TraesCS2A01G474700 chr5D 551890690 551892001 1311 True 1749.000000 1749 90.773000 1028 2348 1 chr5D.!!$R2 1320

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 202 0.041386 GTGGGGGACTAGTGAGGAGT 59.959 60.0 0.0 0.0 0.0 3.85 F
381 382 0.041535 TGGTTCTACCCGCTCCCTAA 59.958 55.0 0.0 0.0 37.5 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1287 1311 0.687920 TGTAGGCGTTGAACATGGGA 59.312 50.0 0.0 0.0 0.0 4.37 R
2414 2470 1.290203 CACATGGTACTCGGCATCAC 58.710 55.0 0.0 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.897457 CTCCGTACTATTATTGTGCTAGTATG 57.103 38.462 0.00 0.00 35.87 2.39
26 27 7.823665 TCCGTACTATTATTGTGCTAGTATGG 58.176 38.462 16.09 16.09 46.87 2.74
27 28 7.449395 TCCGTACTATTATTGTGCTAGTATGGT 59.551 37.037 19.29 3.24 46.23 3.55
28 29 7.541091 CCGTACTATTATTGTGCTAGTATGGTG 59.459 40.741 14.78 0.00 43.71 4.17
29 30 7.541091 CGTACTATTATTGTGCTAGTATGGTGG 59.459 40.741 0.00 0.00 33.94 4.61
30 31 6.769512 ACTATTATTGTGCTAGTATGGTGGG 58.230 40.000 0.00 0.00 0.00 4.61
31 32 5.904984 ATTATTGTGCTAGTATGGTGGGA 57.095 39.130 0.00 0.00 0.00 4.37
32 33 3.845781 ATTGTGCTAGTATGGTGGGAG 57.154 47.619 0.00 0.00 0.00 4.30
33 34 2.247699 TGTGCTAGTATGGTGGGAGT 57.752 50.000 0.00 0.00 0.00 3.85
34 35 2.546899 TGTGCTAGTATGGTGGGAGTT 58.453 47.619 0.00 0.00 0.00 3.01
35 36 2.236146 TGTGCTAGTATGGTGGGAGTTG 59.764 50.000 0.00 0.00 0.00 3.16
36 37 2.236395 GTGCTAGTATGGTGGGAGTTGT 59.764 50.000 0.00 0.00 0.00 3.32
37 38 2.236146 TGCTAGTATGGTGGGAGTTGTG 59.764 50.000 0.00 0.00 0.00 3.33
38 39 2.420129 GCTAGTATGGTGGGAGTTGTGG 60.420 54.545 0.00 0.00 0.00 4.17
39 40 2.038863 AGTATGGTGGGAGTTGTGGA 57.961 50.000 0.00 0.00 0.00 4.02
40 41 2.344592 AGTATGGTGGGAGTTGTGGAA 58.655 47.619 0.00 0.00 0.00 3.53
41 42 2.305927 AGTATGGTGGGAGTTGTGGAAG 59.694 50.000 0.00 0.00 0.00 3.46
42 43 0.251341 ATGGTGGGAGTTGTGGAAGC 60.251 55.000 0.00 0.00 0.00 3.86
43 44 1.352622 TGGTGGGAGTTGTGGAAGCT 61.353 55.000 0.00 0.00 0.00 3.74
44 45 0.178990 GGTGGGAGTTGTGGAAGCTT 60.179 55.000 0.00 0.00 0.00 3.74
45 46 1.073284 GGTGGGAGTTGTGGAAGCTTA 59.927 52.381 0.00 0.00 0.00 3.09
46 47 2.427506 GTGGGAGTTGTGGAAGCTTAG 58.572 52.381 0.00 0.00 0.00 2.18
47 48 1.351017 TGGGAGTTGTGGAAGCTTAGG 59.649 52.381 0.00 0.00 0.00 2.69
48 49 1.628846 GGGAGTTGTGGAAGCTTAGGA 59.371 52.381 0.00 0.00 0.00 2.94
49 50 2.039879 GGGAGTTGTGGAAGCTTAGGAA 59.960 50.000 0.00 0.00 0.00 3.36
50 51 3.308473 GGGAGTTGTGGAAGCTTAGGAAT 60.308 47.826 0.00 0.00 0.00 3.01
51 52 3.691609 GGAGTTGTGGAAGCTTAGGAATG 59.308 47.826 0.00 0.00 0.00 2.67
52 53 3.690460 AGTTGTGGAAGCTTAGGAATGG 58.310 45.455 0.00 0.00 0.00 3.16
53 54 3.074538 AGTTGTGGAAGCTTAGGAATGGT 59.925 43.478 0.00 0.00 0.00 3.55
54 55 4.288626 AGTTGTGGAAGCTTAGGAATGGTA 59.711 41.667 0.00 0.00 0.00 3.25
55 56 5.044846 AGTTGTGGAAGCTTAGGAATGGTAT 60.045 40.000 0.00 0.00 0.00 2.73
56 57 5.450818 TGTGGAAGCTTAGGAATGGTATT 57.549 39.130 0.00 0.00 0.00 1.89
57 58 6.569127 TGTGGAAGCTTAGGAATGGTATTA 57.431 37.500 0.00 0.00 0.00 0.98
58 59 7.149202 TGTGGAAGCTTAGGAATGGTATTAT 57.851 36.000 0.00 0.00 0.00 1.28
59 60 7.224297 TGTGGAAGCTTAGGAATGGTATTATC 58.776 38.462 0.00 0.00 0.00 1.75
60 61 7.072454 TGTGGAAGCTTAGGAATGGTATTATCT 59.928 37.037 0.00 0.00 0.00 1.98
61 62 7.939588 GTGGAAGCTTAGGAATGGTATTATCTT 59.060 37.037 0.00 0.00 0.00 2.40
62 63 8.502738 TGGAAGCTTAGGAATGGTATTATCTTT 58.497 33.333 0.00 0.00 0.00 2.52
63 64 8.787852 GGAAGCTTAGGAATGGTATTATCTTTG 58.212 37.037 0.00 0.00 0.00 2.77
64 65 9.561069 GAAGCTTAGGAATGGTATTATCTTTGA 57.439 33.333 0.00 0.00 0.00 2.69
66 67 9.512588 AGCTTAGGAATGGTATTATCTTTGATG 57.487 33.333 0.00 0.00 0.00 3.07
67 68 8.734386 GCTTAGGAATGGTATTATCTTTGATGG 58.266 37.037 0.00 0.00 0.00 3.51
68 69 9.236006 CTTAGGAATGGTATTATCTTTGATGGG 57.764 37.037 0.00 0.00 0.00 4.00
69 70 6.555711 AGGAATGGTATTATCTTTGATGGGG 58.444 40.000 0.00 0.00 0.00 4.96
70 71 5.185828 GGAATGGTATTATCTTTGATGGGGC 59.814 44.000 0.00 0.00 0.00 5.80
71 72 3.750371 TGGTATTATCTTTGATGGGGCG 58.250 45.455 0.00 0.00 0.00 6.13
72 73 2.488153 GGTATTATCTTTGATGGGGCGC 59.512 50.000 0.00 0.00 0.00 6.53
73 74 1.238439 ATTATCTTTGATGGGGCGCG 58.762 50.000 0.00 0.00 0.00 6.86
74 75 1.444119 TTATCTTTGATGGGGCGCGC 61.444 55.000 25.94 25.94 0.00 6.86
86 87 3.567797 GCGCGCCCTTGCTTAGAG 61.568 66.667 23.24 0.00 34.43 2.43
87 88 2.125512 CGCGCCCTTGCTTAGAGT 60.126 61.111 0.00 0.00 34.43 3.24
88 89 1.141019 CGCGCCCTTGCTTAGAGTA 59.859 57.895 0.00 0.00 34.43 2.59
89 90 0.249489 CGCGCCCTTGCTTAGAGTAT 60.249 55.000 0.00 0.00 34.43 2.12
90 91 1.503294 GCGCCCTTGCTTAGAGTATC 58.497 55.000 0.00 0.00 34.43 2.24
91 92 1.069358 GCGCCCTTGCTTAGAGTATCT 59.931 52.381 0.00 0.00 42.35 1.98
108 109 5.627135 AGTATCTACTTAGGAGAGTGAGGC 58.373 45.833 0.00 0.00 31.13 4.70
109 110 4.528076 ATCTACTTAGGAGAGTGAGGCA 57.472 45.455 0.00 0.00 0.00 4.75
110 111 4.317530 TCTACTTAGGAGAGTGAGGCAA 57.682 45.455 0.00 0.00 0.00 4.52
111 112 4.274147 TCTACTTAGGAGAGTGAGGCAAG 58.726 47.826 0.00 0.00 0.00 4.01
112 113 3.176924 ACTTAGGAGAGTGAGGCAAGA 57.823 47.619 0.00 0.00 0.00 3.02
113 114 3.096092 ACTTAGGAGAGTGAGGCAAGAG 58.904 50.000 0.00 0.00 0.00 2.85
114 115 2.151502 TAGGAGAGTGAGGCAAGAGG 57.848 55.000 0.00 0.00 0.00 3.69
115 116 0.617249 AGGAGAGTGAGGCAAGAGGG 60.617 60.000 0.00 0.00 0.00 4.30
116 117 1.220477 GAGAGTGAGGCAAGAGGGC 59.780 63.158 0.00 0.00 43.80 5.19
124 125 3.359002 GCAAGAGGGCCAACTGTG 58.641 61.111 6.18 7.30 0.00 3.66
126 127 1.604593 CAAGAGGGCCAACTGTGGG 60.605 63.158 6.18 0.00 46.09 4.61
133 134 3.365265 CCAACTGTGGGCTTCGGC 61.365 66.667 0.00 0.00 41.77 5.54
143 144 3.279875 GCTTCGGCCGGGCTAATG 61.280 66.667 27.83 16.12 34.32 1.90
144 145 2.504032 CTTCGGCCGGGCTAATGA 59.496 61.111 27.83 13.02 0.00 2.57
145 146 1.153249 CTTCGGCCGGGCTAATGAA 60.153 57.895 27.83 19.57 0.00 2.57
146 147 0.746563 CTTCGGCCGGGCTAATGAAA 60.747 55.000 27.83 7.69 0.00 2.69
147 148 0.746563 TTCGGCCGGGCTAATGAAAG 60.747 55.000 27.83 7.74 0.00 2.62
148 149 2.186826 CGGCCGGGCTAATGAAAGG 61.187 63.158 27.04 2.56 0.00 3.11
149 150 1.828224 GGCCGGGCTAATGAAAGGG 60.828 63.158 22.87 0.00 0.00 3.95
150 151 1.226262 GCCGGGCTAATGAAAGGGA 59.774 57.895 12.87 0.00 0.00 4.20
151 152 0.395173 GCCGGGCTAATGAAAGGGAA 60.395 55.000 12.87 0.00 0.00 3.97
152 153 1.754201 GCCGGGCTAATGAAAGGGAAT 60.754 52.381 12.87 0.00 0.00 3.01
153 154 1.956477 CCGGGCTAATGAAAGGGAATG 59.044 52.381 0.00 0.00 0.00 2.67
154 155 2.654863 CGGGCTAATGAAAGGGAATGT 58.345 47.619 0.00 0.00 0.00 2.71
155 156 3.434453 CCGGGCTAATGAAAGGGAATGTA 60.434 47.826 0.00 0.00 0.00 2.29
156 157 4.204012 CGGGCTAATGAAAGGGAATGTAA 58.796 43.478 0.00 0.00 0.00 2.41
157 158 4.036380 CGGGCTAATGAAAGGGAATGTAAC 59.964 45.833 0.00 0.00 0.00 2.50
158 159 4.341235 GGGCTAATGAAAGGGAATGTAACC 59.659 45.833 0.00 0.00 0.00 2.85
167 168 3.468071 GGGAATGTAACCCCCTTCTTT 57.532 47.619 0.00 0.00 41.38 2.52
168 169 4.596354 GGGAATGTAACCCCCTTCTTTA 57.404 45.455 0.00 0.00 41.38 1.85
169 170 4.533815 GGGAATGTAACCCCCTTCTTTAG 58.466 47.826 0.00 0.00 41.38 1.85
170 171 4.017775 GGGAATGTAACCCCCTTCTTTAGT 60.018 45.833 0.00 0.00 41.38 2.24
171 172 5.192321 GGGAATGTAACCCCCTTCTTTAGTA 59.808 44.000 0.00 0.00 41.38 1.82
172 173 6.354938 GGAATGTAACCCCCTTCTTTAGTAG 58.645 44.000 0.00 0.00 0.00 2.57
173 174 5.970501 ATGTAACCCCCTTCTTTAGTAGG 57.029 43.478 0.00 0.00 33.00 3.18
180 181 3.721021 CCCTTCTTTAGTAGGGTGGAGA 58.279 50.000 12.08 0.00 44.83 3.71
181 182 3.707102 CCCTTCTTTAGTAGGGTGGAGAG 59.293 52.174 12.08 0.00 44.83 3.20
182 183 3.707102 CCTTCTTTAGTAGGGTGGAGAGG 59.293 52.174 0.00 0.00 0.00 3.69
183 184 4.354662 CTTCTTTAGTAGGGTGGAGAGGT 58.645 47.826 0.00 0.00 0.00 3.85
184 185 3.709587 TCTTTAGTAGGGTGGAGAGGTG 58.290 50.000 0.00 0.00 0.00 4.00
185 186 2.544844 TTAGTAGGGTGGAGAGGTGG 57.455 55.000 0.00 0.00 0.00 4.61
186 187 0.635009 TAGTAGGGTGGAGAGGTGGG 59.365 60.000 0.00 0.00 0.00 4.61
187 188 1.689582 GTAGGGTGGAGAGGTGGGG 60.690 68.421 0.00 0.00 0.00 4.96
188 189 2.955859 TAGGGTGGAGAGGTGGGGG 61.956 68.421 0.00 0.00 0.00 5.40
189 190 4.348495 GGGTGGAGAGGTGGGGGA 62.348 72.222 0.00 0.00 0.00 4.81
190 191 3.009714 GGTGGAGAGGTGGGGGAC 61.010 72.222 0.00 0.00 0.00 4.46
191 192 2.122954 GTGGAGAGGTGGGGGACT 59.877 66.667 0.00 0.00 0.00 3.85
192 193 1.390926 GTGGAGAGGTGGGGGACTA 59.609 63.158 0.00 0.00 0.00 2.59
193 194 0.688087 GTGGAGAGGTGGGGGACTAG 60.688 65.000 0.00 0.00 0.00 2.57
194 195 1.153695 TGGAGAGGTGGGGGACTAGT 61.154 60.000 0.00 0.00 0.00 2.57
195 196 0.688087 GGAGAGGTGGGGGACTAGTG 60.688 65.000 0.00 0.00 0.00 2.74
196 197 0.335361 GAGAGGTGGGGGACTAGTGA 59.665 60.000 0.00 0.00 0.00 3.41
197 198 0.336737 AGAGGTGGGGGACTAGTGAG 59.663 60.000 0.00 0.00 0.00 3.51
198 199 0.688087 GAGGTGGGGGACTAGTGAGG 60.688 65.000 0.00 0.00 0.00 3.86
199 200 1.153695 AGGTGGGGGACTAGTGAGGA 61.154 60.000 0.00 0.00 0.00 3.71
200 201 0.688087 GGTGGGGGACTAGTGAGGAG 60.688 65.000 0.00 0.00 0.00 3.69
201 202 0.041386 GTGGGGGACTAGTGAGGAGT 59.959 60.000 0.00 0.00 0.00 3.85
202 203 1.287146 GTGGGGGACTAGTGAGGAGTA 59.713 57.143 0.00 0.00 0.00 2.59
203 204 2.005350 TGGGGGACTAGTGAGGAGTAA 58.995 52.381 0.00 0.00 0.00 2.24
204 205 2.590611 TGGGGGACTAGTGAGGAGTAAT 59.409 50.000 0.00 0.00 0.00 1.89
205 206 3.013648 TGGGGGACTAGTGAGGAGTAATT 59.986 47.826 0.00 0.00 0.00 1.40
206 207 4.038633 GGGGGACTAGTGAGGAGTAATTT 58.961 47.826 0.00 0.00 0.00 1.82
207 208 4.141688 GGGGGACTAGTGAGGAGTAATTTG 60.142 50.000 0.00 0.00 0.00 2.32
208 209 4.470304 GGGGACTAGTGAGGAGTAATTTGT 59.530 45.833 0.00 0.00 0.00 2.83
209 210 5.659971 GGGGACTAGTGAGGAGTAATTTGTA 59.340 44.000 0.00 0.00 0.00 2.41
210 211 6.406737 GGGGACTAGTGAGGAGTAATTTGTAC 60.407 46.154 0.00 0.00 0.00 2.90
211 212 6.406737 GGGACTAGTGAGGAGTAATTTGTACC 60.407 46.154 0.00 0.00 0.00 3.34
212 213 6.154021 GGACTAGTGAGGAGTAATTTGTACCA 59.846 42.308 0.00 0.00 0.00 3.25
213 214 7.310237 GGACTAGTGAGGAGTAATTTGTACCAA 60.310 40.741 0.00 0.00 0.00 3.67
214 215 7.384477 ACTAGTGAGGAGTAATTTGTACCAAC 58.616 38.462 0.00 0.00 0.00 3.77
215 216 6.182507 AGTGAGGAGTAATTTGTACCAACA 57.817 37.500 0.00 0.00 0.00 3.33
216 217 6.597562 AGTGAGGAGTAATTTGTACCAACAA 58.402 36.000 0.00 0.00 43.85 2.83
228 229 6.761099 TTGTACCAACAAACTGTGTAATGT 57.239 33.333 0.00 0.00 42.60 2.71
229 230 6.125327 TGTACCAACAAACTGTGTAATGTG 57.875 37.500 0.00 0.00 40.60 3.21
230 231 4.647424 ACCAACAAACTGTGTAATGTGG 57.353 40.909 0.00 0.00 40.60 4.17
231 232 4.020543 ACCAACAAACTGTGTAATGTGGT 58.979 39.130 0.00 0.00 41.05 4.16
232 233 4.142271 ACCAACAAACTGTGTAATGTGGTG 60.142 41.667 0.88 0.00 43.17 4.17
233 234 4.358851 CAACAAACTGTGTAATGTGGTGG 58.641 43.478 0.00 0.00 40.60 4.61
234 235 3.892284 ACAAACTGTGTAATGTGGTGGA 58.108 40.909 0.00 0.00 39.29 4.02
235 236 3.882888 ACAAACTGTGTAATGTGGTGGAG 59.117 43.478 0.00 0.00 39.29 3.86
236 237 2.859165 ACTGTGTAATGTGGTGGAGG 57.141 50.000 0.00 0.00 0.00 4.30
237 238 1.271379 ACTGTGTAATGTGGTGGAGGC 60.271 52.381 0.00 0.00 0.00 4.70
238 239 1.003580 CTGTGTAATGTGGTGGAGGCT 59.996 52.381 0.00 0.00 0.00 4.58
239 240 1.423541 TGTGTAATGTGGTGGAGGCTT 59.576 47.619 0.00 0.00 0.00 4.35
240 241 2.158534 TGTGTAATGTGGTGGAGGCTTT 60.159 45.455 0.00 0.00 0.00 3.51
241 242 2.488153 GTGTAATGTGGTGGAGGCTTTC 59.512 50.000 0.00 0.00 0.00 2.62
242 243 2.375174 TGTAATGTGGTGGAGGCTTTCT 59.625 45.455 0.00 0.00 0.00 2.52
243 244 2.683211 AATGTGGTGGAGGCTTTCTT 57.317 45.000 0.00 0.00 0.00 2.52
244 245 2.683211 ATGTGGTGGAGGCTTTCTTT 57.317 45.000 0.00 0.00 0.00 2.52
245 246 1.691196 TGTGGTGGAGGCTTTCTTTG 58.309 50.000 0.00 0.00 0.00 2.77
246 247 0.315251 GTGGTGGAGGCTTTCTTTGC 59.685 55.000 0.00 0.00 0.00 3.68
256 257 4.327982 GGCTTTCTTTGCCTTTCTTCTT 57.672 40.909 0.00 0.00 46.38 2.52
257 258 4.697514 GGCTTTCTTTGCCTTTCTTCTTT 58.302 39.130 0.00 0.00 46.38 2.52
258 259 5.842907 GGCTTTCTTTGCCTTTCTTCTTTA 58.157 37.500 0.00 0.00 46.38 1.85
259 260 6.280643 GGCTTTCTTTGCCTTTCTTCTTTAA 58.719 36.000 0.00 0.00 46.38 1.52
260 261 6.931281 GGCTTTCTTTGCCTTTCTTCTTTAAT 59.069 34.615 0.00 0.00 46.38 1.40
261 262 8.088365 GGCTTTCTTTGCCTTTCTTCTTTAATA 58.912 33.333 0.00 0.00 46.38 0.98
262 263 9.645059 GCTTTCTTTGCCTTTCTTCTTTAATAT 57.355 29.630 0.00 0.00 0.00 1.28
291 292 3.989705 CACACTCGTGCATATTCGAAA 57.010 42.857 0.00 0.00 36.06 3.46
292 293 4.320667 CACACTCGTGCATATTCGAAAA 57.679 40.909 0.00 0.00 36.06 2.29
293 294 4.707563 CACACTCGTGCATATTCGAAAAA 58.292 39.130 0.00 0.00 36.06 1.94
329 330 3.941483 CACTGCAGGTGTCCTTATTTAGG 59.059 47.826 19.93 0.00 40.10 2.69
330 331 2.945668 CTGCAGGTGTCCTTATTTAGGC 59.054 50.000 5.57 0.00 44.37 3.93
331 332 2.298610 GCAGGTGTCCTTATTTAGGCC 58.701 52.381 0.00 0.00 44.37 5.19
332 333 2.932261 CAGGTGTCCTTATTTAGGCCC 58.068 52.381 0.00 0.00 44.37 5.80
333 334 2.509964 CAGGTGTCCTTATTTAGGCCCT 59.490 50.000 0.00 0.00 44.37 5.19
334 335 3.714798 CAGGTGTCCTTATTTAGGCCCTA 59.285 47.826 0.00 0.00 44.37 3.53
335 336 4.351111 CAGGTGTCCTTATTTAGGCCCTAT 59.649 45.833 0.00 0.00 44.37 2.57
336 337 4.982302 AGGTGTCCTTATTTAGGCCCTATT 59.018 41.667 0.00 0.00 44.37 1.73
337 338 5.073280 AGGTGTCCTTATTTAGGCCCTATTC 59.927 44.000 0.00 0.00 44.37 1.75
338 339 4.995487 GTGTCCTTATTTAGGCCCTATTCG 59.005 45.833 0.00 0.00 44.37 3.34
339 340 4.041198 TGTCCTTATTTAGGCCCTATTCGG 59.959 45.833 0.00 0.00 44.37 4.30
348 349 3.095922 CCCTATTCGGCAACCCTTC 57.904 57.895 0.00 0.00 0.00 3.46
349 350 0.465642 CCCTATTCGGCAACCCTTCC 60.466 60.000 0.00 0.00 0.00 3.46
350 351 0.814010 CCTATTCGGCAACCCTTCCG 60.814 60.000 0.00 0.00 46.52 4.30
351 352 0.814010 CTATTCGGCAACCCTTCCGG 60.814 60.000 0.00 0.00 45.31 5.14
372 373 2.183555 CGGAGCGTGGTTCTACCC 59.816 66.667 0.00 0.00 37.50 3.69
373 374 2.183555 GGAGCGTGGTTCTACCCG 59.816 66.667 0.00 0.00 37.50 5.28
376 377 2.508663 GCGTGGTTCTACCCGCTC 60.509 66.667 18.17 0.00 46.80 5.03
377 378 2.183555 CGTGGTTCTACCCGCTCC 59.816 66.667 0.00 0.00 37.50 4.70
378 379 2.582978 GTGGTTCTACCCGCTCCC 59.417 66.667 0.00 0.00 37.50 4.30
379 380 1.988406 GTGGTTCTACCCGCTCCCT 60.988 63.158 0.00 0.00 37.50 4.20
380 381 0.685458 GTGGTTCTACCCGCTCCCTA 60.685 60.000 0.00 0.00 37.50 3.53
381 382 0.041535 TGGTTCTACCCGCTCCCTAA 59.958 55.000 0.00 0.00 37.50 2.69
382 383 1.197812 GGTTCTACCCGCTCCCTAAA 58.802 55.000 0.00 0.00 30.04 1.85
383 384 1.767088 GGTTCTACCCGCTCCCTAAAT 59.233 52.381 0.00 0.00 30.04 1.40
384 385 2.484947 GGTTCTACCCGCTCCCTAAATG 60.485 54.545 0.00 0.00 30.04 2.32
385 386 1.420430 TCTACCCGCTCCCTAAATGG 58.580 55.000 0.00 0.00 0.00 3.16
386 387 1.129058 CTACCCGCTCCCTAAATGGT 58.871 55.000 0.00 0.00 0.00 3.55
387 388 2.091166 TCTACCCGCTCCCTAAATGGTA 60.091 50.000 0.00 0.00 0.00 3.25
388 389 1.587066 ACCCGCTCCCTAAATGGTAA 58.413 50.000 0.00 0.00 0.00 2.85
389 390 1.211212 ACCCGCTCCCTAAATGGTAAC 59.789 52.381 0.00 0.00 0.00 2.50
390 391 1.489230 CCCGCTCCCTAAATGGTAACT 59.511 52.381 0.00 0.00 37.61 2.24
391 392 2.701951 CCCGCTCCCTAAATGGTAACTA 59.298 50.000 0.00 0.00 37.61 2.24
392 393 3.493873 CCCGCTCCCTAAATGGTAACTAC 60.494 52.174 0.00 0.00 37.61 2.73
393 394 3.133362 CCGCTCCCTAAATGGTAACTACA 59.867 47.826 0.00 0.00 37.61 2.74
394 395 4.369182 CGCTCCCTAAATGGTAACTACAG 58.631 47.826 0.00 0.00 37.61 2.74
395 396 4.704965 GCTCCCTAAATGGTAACTACAGG 58.295 47.826 0.00 0.00 37.61 4.00
396 397 4.704965 CTCCCTAAATGGTAACTACAGGC 58.295 47.826 0.00 0.00 37.61 4.85
397 398 3.457012 TCCCTAAATGGTAACTACAGGCC 59.543 47.826 0.00 0.00 37.61 5.19
398 399 3.463944 CCTAAATGGTAACTACAGGCCG 58.536 50.000 0.00 0.00 37.61 6.13
399 400 1.746470 AAATGGTAACTACAGGCCGC 58.254 50.000 0.00 0.00 37.61 6.53
400 401 0.909623 AATGGTAACTACAGGCCGCT 59.090 50.000 0.00 0.00 37.61 5.52
401 402 0.464452 ATGGTAACTACAGGCCGCTC 59.536 55.000 0.00 0.00 37.61 5.03
402 403 1.143401 GGTAACTACAGGCCGCTCC 59.857 63.158 0.00 0.00 0.00 4.70
403 404 1.226888 GTAACTACAGGCCGCTCCG 60.227 63.158 0.00 0.00 40.77 4.63
404 405 3.072486 TAACTACAGGCCGCTCCGC 62.072 63.158 0.00 0.00 40.77 5.54
406 407 4.577246 CTACAGGCCGCTCCGCTC 62.577 72.222 0.00 0.00 40.77 5.03
427 428 2.978010 ACGGGAGTTGCAAAGCGG 60.978 61.111 0.00 0.00 43.33 5.52
428 429 2.668212 CGGGAGTTGCAAAGCGGA 60.668 61.111 0.00 0.00 0.00 5.54
429 430 2.680913 CGGGAGTTGCAAAGCGGAG 61.681 63.158 0.00 0.00 0.00 4.63
430 431 2.335712 GGGAGTTGCAAAGCGGAGG 61.336 63.158 0.00 0.00 0.00 4.30
431 432 2.335712 GGAGTTGCAAAGCGGAGGG 61.336 63.158 0.00 0.00 0.00 4.30
432 433 1.302511 GAGTTGCAAAGCGGAGGGA 60.303 57.895 0.00 0.00 0.00 4.20
433 434 0.678048 GAGTTGCAAAGCGGAGGGAT 60.678 55.000 0.00 0.00 0.00 3.85
434 435 0.962356 AGTTGCAAAGCGGAGGGATG 60.962 55.000 0.00 0.00 0.00 3.51
435 436 2.342650 TTGCAAAGCGGAGGGATGC 61.343 57.895 0.00 0.00 37.52 3.91
436 437 3.521796 GCAAAGCGGAGGGATGCC 61.522 66.667 0.00 0.00 0.00 4.40
443 444 4.162690 GGAGGGATGCCGAACGCT 62.163 66.667 0.00 0.00 38.78 5.07
444 445 2.586357 GAGGGATGCCGAACGCTC 60.586 66.667 0.00 0.00 38.78 5.03
445 446 4.162690 AGGGATGCCGAACGCTCC 62.163 66.667 0.00 0.00 38.78 4.70
554 555 1.865865 ACCAGTGACGCAACAACTAG 58.134 50.000 0.00 0.00 0.00 2.57
560 561 2.662156 GTGACGCAACAACTAGCTACTC 59.338 50.000 0.00 0.00 0.00 2.59
570 572 5.520751 ACAACTAGCTACTCCCTAACTGAT 58.479 41.667 0.00 0.00 0.00 2.90
582 584 2.104963 CCTAACTGATAGGCCAAGTCCC 59.895 54.545 5.01 0.00 44.72 4.46
618 631 6.757947 ACTTGCATGATTTGTGTATAAATGCC 59.242 34.615 6.60 0.00 30.78 4.40
653 666 1.944032 TGACATGAGCCATGACGATG 58.056 50.000 18.41 0.00 43.81 3.84
654 667 1.481772 TGACATGAGCCATGACGATGA 59.518 47.619 18.41 0.00 43.81 2.92
683 696 1.559682 TGGAAGATGGACCTGGTAAGC 59.440 52.381 0.00 0.00 0.00 3.09
688 701 3.840991 AGATGGACCTGGTAAGCGTATA 58.159 45.455 0.00 0.00 0.00 1.47
697 710 3.386486 TGGTAAGCGTATAAATCTGCGG 58.614 45.455 0.00 0.00 0.00 5.69
721 734 3.056536 TCATCTCCGGTCTTGAGAAACTG 60.057 47.826 0.00 0.00 41.87 3.16
731 744 4.021894 GTCTTGAGAAACTGCTACCTCTGA 60.022 45.833 0.00 0.00 0.00 3.27
740 753 8.103305 AGAAACTGCTACCTCTGAATCAAAATA 58.897 33.333 0.00 0.00 0.00 1.40
741 754 8.814038 AAACTGCTACCTCTGAATCAAAATAT 57.186 30.769 0.00 0.00 0.00 1.28
743 756 9.905713 AACTGCTACCTCTGAATCAAAATATAA 57.094 29.630 0.00 0.00 0.00 0.98
744 757 9.553064 ACTGCTACCTCTGAATCAAAATATAAG 57.447 33.333 0.00 0.00 0.00 1.73
745 758 9.770097 CTGCTACCTCTGAATCAAAATATAAGA 57.230 33.333 0.00 0.00 0.00 2.10
746 759 9.547753 TGCTACCTCTGAATCAAAATATAAGAC 57.452 33.333 0.00 0.00 0.00 3.01
861 874 5.692115 TTGCTCTGAACCTGGATGTAATA 57.308 39.130 0.00 0.00 0.00 0.98
863 876 6.994421 TGCTCTGAACCTGGATGTAATATA 57.006 37.500 0.00 0.00 0.00 0.86
871 884 5.819991 ACCTGGATGTAATATAAGCATGGG 58.180 41.667 0.00 0.00 0.00 4.00
930 952 1.287425 GTTCACTGCCGCCTACATAC 58.713 55.000 0.00 0.00 0.00 2.39
958 980 1.445582 CCGTAGTGCCGTTCAGTCC 60.446 63.158 0.00 0.00 0.00 3.85
970 992 0.616395 TTCAGTCCCATCGGCCACTA 60.616 55.000 2.24 0.00 0.00 2.74
971 993 0.616395 TCAGTCCCATCGGCCACTAA 60.616 55.000 2.24 0.00 0.00 2.24
972 994 0.179073 CAGTCCCATCGGCCACTAAG 60.179 60.000 2.24 0.00 0.00 2.18
973 995 1.523938 GTCCCATCGGCCACTAAGC 60.524 63.158 2.24 0.00 0.00 3.09
974 996 1.992834 TCCCATCGGCCACTAAGCA 60.993 57.895 2.24 0.00 0.00 3.91
977 999 0.464373 CCATCGGCCACTAAGCACAT 60.464 55.000 2.24 0.00 0.00 3.21
1025 1047 0.957395 ACAGAGAAGCACGCAATGGG 60.957 55.000 0.00 0.00 0.00 4.00
1026 1048 2.042831 AGAGAAGCACGCAATGGGC 61.043 57.895 0.00 0.00 39.90 5.36
1287 1311 0.921256 CCTTCCCCTCCCACCTCATT 60.921 60.000 0.00 0.00 0.00 2.57
2342 2398 4.812476 CGTCCGCGCTTCCATGGA 62.812 66.667 11.44 11.44 0.00 3.41
2414 2470 1.086696 AGGTGATCGACAAAATGCCG 58.913 50.000 0.00 0.00 0.00 5.69
2424 2480 0.523968 CAAAATGCCGTGATGCCGAG 60.524 55.000 0.00 0.00 0.00 4.63
2452 2508 1.078143 GGACGAGCCCTTTGATGCT 60.078 57.895 0.00 0.00 41.42 3.79
2463 2519 3.760151 CCCTTTGATGCTGATTCAGTTCA 59.240 43.478 14.90 14.32 33.43 3.18
2464 2520 4.142447 CCCTTTGATGCTGATTCAGTTCAG 60.142 45.833 14.90 7.83 44.87 3.02
2472 2528 3.930336 CTGATTCAGTTCAGCCAGTGTA 58.070 45.455 5.46 0.00 36.96 2.90
2473 2529 4.511527 CTGATTCAGTTCAGCCAGTGTAT 58.488 43.478 5.46 0.00 36.96 2.29
2475 2531 5.316167 TGATTCAGTTCAGCCAGTGTATTT 58.684 37.500 0.00 0.00 0.00 1.40
2476 2532 5.769662 TGATTCAGTTCAGCCAGTGTATTTT 59.230 36.000 0.00 0.00 0.00 1.82
2477 2533 6.939730 TGATTCAGTTCAGCCAGTGTATTTTA 59.060 34.615 0.00 0.00 0.00 1.52
2478 2534 7.611467 TGATTCAGTTCAGCCAGTGTATTTTAT 59.389 33.333 0.00 0.00 0.00 1.40
2479 2535 7.759489 TTCAGTTCAGCCAGTGTATTTTATT 57.241 32.000 0.00 0.00 0.00 1.40
2480 2536 7.759489 TCAGTTCAGCCAGTGTATTTTATTT 57.241 32.000 0.00 0.00 0.00 1.40
2481 2537 8.177119 TCAGTTCAGCCAGTGTATTTTATTTT 57.823 30.769 0.00 0.00 0.00 1.82
2482 2538 9.290988 TCAGTTCAGCCAGTGTATTTTATTTTA 57.709 29.630 0.00 0.00 0.00 1.52
2483 2539 9.341899 CAGTTCAGCCAGTGTATTTTATTTTAC 57.658 33.333 0.00 0.00 0.00 2.01
2485 2541 9.908152 GTTCAGCCAGTGTATTTTATTTTACTT 57.092 29.630 0.00 0.00 0.00 2.24
2490 2546 9.805966 GCCAGTGTATTTTATTTTACTTTTTGC 57.194 29.630 0.00 0.00 0.00 3.68
2493 2549 9.198837 AGTGTATTTTATTTTACTTTTTGCGGG 57.801 29.630 0.00 0.00 0.00 6.13
2494 2550 8.436970 GTGTATTTTATTTTACTTTTTGCGGGG 58.563 33.333 0.00 0.00 0.00 5.73
2600 2720 6.091986 GGAGCTCAGAGATTTCAGTTTGTAAG 59.908 42.308 17.19 0.00 0.00 2.34
2817 5162 0.032130 TCATATCTTCGGGCGCACTC 59.968 55.000 8.62 0.00 0.00 3.51
2906 5254 6.183360 CCCGTCTTCGTATGTAAAAGAAAGAC 60.183 42.308 0.00 0.00 31.26 3.01
2927 5276 3.009253 ACGGGGTTGTTTGTATATGTCCA 59.991 43.478 0.00 0.00 0.00 4.02
2989 5811 1.074248 TTTTTCTCCCACGCCCTCC 59.926 57.895 0.00 0.00 0.00 4.30
3033 5855 6.147492 GCATGTGGCTGAACAATTTAAAATGA 59.853 34.615 10.23 0.00 40.25 2.57
3044 5866 8.674263 AACAATTTAAAATGAGGCACAAATCA 57.326 26.923 10.23 0.00 0.00 2.57
3068 5890 2.549992 GCCATACACTGACAAGTCCACA 60.550 50.000 0.00 0.00 32.98 4.17
3278 7608 1.507140 TCCTATCGGCTCCCATGTTT 58.493 50.000 0.00 0.00 0.00 2.83
3313 7725 3.147595 CGGGAGGCGACCAGATCA 61.148 66.667 0.00 0.00 0.00 2.92
3353 7888 0.252284 TCCCCTTTCTCTTCCTCGCT 60.252 55.000 0.00 0.00 0.00 4.93
3361 7896 1.636570 CTCTTCCTCGCTGTCGTCGA 61.637 60.000 0.00 0.00 36.96 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.449395 ACCATACTAGCACAATAATAGTACGGA 59.551 37.037 9.87 0.00 37.48 4.69
2 3 7.541091 CACCATACTAGCACAATAATAGTACGG 59.459 40.741 3.01 3.01 39.87 4.02
3 4 7.541091 CCACCATACTAGCACAATAATAGTACG 59.459 40.741 0.00 0.00 35.45 3.67
4 5 7.817962 CCCACCATACTAGCACAATAATAGTAC 59.182 40.741 0.00 0.00 35.45 2.73
5 6 7.731235 TCCCACCATACTAGCACAATAATAGTA 59.269 37.037 0.00 0.00 36.67 1.82
6 7 6.557253 TCCCACCATACTAGCACAATAATAGT 59.443 38.462 0.00 0.00 34.29 2.12
7 8 7.004555 TCCCACCATACTAGCACAATAATAG 57.995 40.000 0.00 0.00 0.00 1.73
8 9 6.557253 ACTCCCACCATACTAGCACAATAATA 59.443 38.462 0.00 0.00 0.00 0.98
9 10 5.369699 ACTCCCACCATACTAGCACAATAAT 59.630 40.000 0.00 0.00 0.00 1.28
10 11 4.719773 ACTCCCACCATACTAGCACAATAA 59.280 41.667 0.00 0.00 0.00 1.40
11 12 4.295201 ACTCCCACCATACTAGCACAATA 58.705 43.478 0.00 0.00 0.00 1.90
12 13 3.115390 ACTCCCACCATACTAGCACAAT 58.885 45.455 0.00 0.00 0.00 2.71
13 14 2.546899 ACTCCCACCATACTAGCACAA 58.453 47.619 0.00 0.00 0.00 3.33
14 15 2.236146 CAACTCCCACCATACTAGCACA 59.764 50.000 0.00 0.00 0.00 4.57
15 16 2.236395 ACAACTCCCACCATACTAGCAC 59.764 50.000 0.00 0.00 0.00 4.40
16 17 2.236146 CACAACTCCCACCATACTAGCA 59.764 50.000 0.00 0.00 0.00 3.49
17 18 2.420129 CCACAACTCCCACCATACTAGC 60.420 54.545 0.00 0.00 0.00 3.42
18 19 3.104512 TCCACAACTCCCACCATACTAG 58.895 50.000 0.00 0.00 0.00 2.57
19 20 3.193395 TCCACAACTCCCACCATACTA 57.807 47.619 0.00 0.00 0.00 1.82
20 21 2.038863 TCCACAACTCCCACCATACT 57.961 50.000 0.00 0.00 0.00 2.12
21 22 2.711542 CTTCCACAACTCCCACCATAC 58.288 52.381 0.00 0.00 0.00 2.39
22 23 1.004277 GCTTCCACAACTCCCACCATA 59.996 52.381 0.00 0.00 0.00 2.74
23 24 0.251341 GCTTCCACAACTCCCACCAT 60.251 55.000 0.00 0.00 0.00 3.55
24 25 1.150536 GCTTCCACAACTCCCACCA 59.849 57.895 0.00 0.00 0.00 4.17
25 26 0.178990 AAGCTTCCACAACTCCCACC 60.179 55.000 0.00 0.00 0.00 4.61
26 27 2.427506 CTAAGCTTCCACAACTCCCAC 58.572 52.381 0.00 0.00 0.00 4.61
27 28 1.351017 CCTAAGCTTCCACAACTCCCA 59.649 52.381 0.00 0.00 0.00 4.37
28 29 1.628846 TCCTAAGCTTCCACAACTCCC 59.371 52.381 0.00 0.00 0.00 4.30
29 30 3.418684 TTCCTAAGCTTCCACAACTCC 57.581 47.619 0.00 0.00 0.00 3.85
30 31 3.691609 CCATTCCTAAGCTTCCACAACTC 59.308 47.826 0.00 0.00 0.00 3.01
31 32 3.074538 ACCATTCCTAAGCTTCCACAACT 59.925 43.478 0.00 0.00 0.00 3.16
32 33 3.421844 ACCATTCCTAAGCTTCCACAAC 58.578 45.455 0.00 0.00 0.00 3.32
33 34 3.806949 ACCATTCCTAAGCTTCCACAA 57.193 42.857 0.00 0.00 0.00 3.33
34 35 5.450818 AATACCATTCCTAAGCTTCCACA 57.549 39.130 0.00 0.00 0.00 4.17
35 36 7.454225 AGATAATACCATTCCTAAGCTTCCAC 58.546 38.462 0.00 0.00 0.00 4.02
36 37 7.633018 AGATAATACCATTCCTAAGCTTCCA 57.367 36.000 0.00 0.00 0.00 3.53
37 38 8.787852 CAAAGATAATACCATTCCTAAGCTTCC 58.212 37.037 0.00 0.00 0.00 3.46
38 39 9.561069 TCAAAGATAATACCATTCCTAAGCTTC 57.439 33.333 0.00 0.00 0.00 3.86
40 41 9.512588 CATCAAAGATAATACCATTCCTAAGCT 57.487 33.333 0.00 0.00 0.00 3.74
41 42 8.734386 CCATCAAAGATAATACCATTCCTAAGC 58.266 37.037 0.00 0.00 0.00 3.09
42 43 9.236006 CCCATCAAAGATAATACCATTCCTAAG 57.764 37.037 0.00 0.00 0.00 2.18
43 44 8.170061 CCCCATCAAAGATAATACCATTCCTAA 58.830 37.037 0.00 0.00 0.00 2.69
44 45 7.698912 CCCCATCAAAGATAATACCATTCCTA 58.301 38.462 0.00 0.00 0.00 2.94
45 46 6.555711 CCCCATCAAAGATAATACCATTCCT 58.444 40.000 0.00 0.00 0.00 3.36
46 47 5.185828 GCCCCATCAAAGATAATACCATTCC 59.814 44.000 0.00 0.00 0.00 3.01
47 48 5.106157 CGCCCCATCAAAGATAATACCATTC 60.106 44.000 0.00 0.00 0.00 2.67
48 49 4.766891 CGCCCCATCAAAGATAATACCATT 59.233 41.667 0.00 0.00 0.00 3.16
49 50 4.335416 CGCCCCATCAAAGATAATACCAT 58.665 43.478 0.00 0.00 0.00 3.55
50 51 3.750371 CGCCCCATCAAAGATAATACCA 58.250 45.455 0.00 0.00 0.00 3.25
51 52 2.488153 GCGCCCCATCAAAGATAATACC 59.512 50.000 0.00 0.00 0.00 2.73
52 53 2.159627 CGCGCCCCATCAAAGATAATAC 59.840 50.000 0.00 0.00 0.00 1.89
53 54 2.422597 CGCGCCCCATCAAAGATAATA 58.577 47.619 0.00 0.00 0.00 0.98
54 55 1.238439 CGCGCCCCATCAAAGATAAT 58.762 50.000 0.00 0.00 0.00 1.28
55 56 1.444119 GCGCGCCCCATCAAAGATAA 61.444 55.000 23.24 0.00 0.00 1.75
56 57 1.891919 GCGCGCCCCATCAAAGATA 60.892 57.895 23.24 0.00 0.00 1.98
57 58 3.211963 GCGCGCCCCATCAAAGAT 61.212 61.111 23.24 0.00 0.00 2.40
71 72 7.463126 AAGTAGATACTCTAAGCAAGGGCGC 62.463 48.000 0.00 0.00 39.55 6.53
72 73 4.038162 AAGTAGATACTCTAAGCAAGGGCG 59.962 45.833 0.00 0.00 39.55 6.13
73 74 5.538849 AAGTAGATACTCTAAGCAAGGGC 57.461 43.478 0.00 0.00 34.99 5.19
74 75 7.005296 TCCTAAGTAGATACTCTAAGCAAGGG 58.995 42.308 0.00 0.00 34.99 3.95
75 76 7.940137 TCTCCTAAGTAGATACTCTAAGCAAGG 59.060 40.741 0.00 0.00 34.99 3.61
76 77 8.911918 TCTCCTAAGTAGATACTCTAAGCAAG 57.088 38.462 0.00 0.00 34.99 4.01
77 78 8.496088 ACTCTCCTAAGTAGATACTCTAAGCAA 58.504 37.037 0.00 0.00 34.99 3.91
78 79 7.934665 CACTCTCCTAAGTAGATACTCTAAGCA 59.065 40.741 0.00 0.00 34.99 3.91
79 80 8.152246 TCACTCTCCTAAGTAGATACTCTAAGC 58.848 40.741 0.00 0.00 34.99 3.09
80 81 9.706691 CTCACTCTCCTAAGTAGATACTCTAAG 57.293 40.741 0.00 0.00 34.99 2.18
81 82 8.653191 CCTCACTCTCCTAAGTAGATACTCTAA 58.347 40.741 0.00 0.00 34.99 2.10
82 83 7.256404 GCCTCACTCTCCTAAGTAGATACTCTA 60.256 44.444 0.00 0.00 34.99 2.43
83 84 6.465321 GCCTCACTCTCCTAAGTAGATACTCT 60.465 46.154 0.00 0.00 34.99 3.24
84 85 5.704053 GCCTCACTCTCCTAAGTAGATACTC 59.296 48.000 0.00 0.00 34.99 2.59
85 86 5.132985 TGCCTCACTCTCCTAAGTAGATACT 59.867 44.000 0.00 0.00 38.39 2.12
86 87 5.378332 TGCCTCACTCTCCTAAGTAGATAC 58.622 45.833 0.00 0.00 0.00 2.24
87 88 5.648330 TGCCTCACTCTCCTAAGTAGATA 57.352 43.478 0.00 0.00 0.00 1.98
88 89 4.528076 TGCCTCACTCTCCTAAGTAGAT 57.472 45.455 0.00 0.00 0.00 1.98
89 90 4.018324 TCTTGCCTCACTCTCCTAAGTAGA 60.018 45.833 0.00 0.00 0.00 2.59
90 91 4.274147 TCTTGCCTCACTCTCCTAAGTAG 58.726 47.826 0.00 0.00 0.00 2.57
91 92 4.274147 CTCTTGCCTCACTCTCCTAAGTA 58.726 47.826 0.00 0.00 0.00 2.24
92 93 3.096092 CTCTTGCCTCACTCTCCTAAGT 58.904 50.000 0.00 0.00 0.00 2.24
93 94 2.430332 CCTCTTGCCTCACTCTCCTAAG 59.570 54.545 0.00 0.00 0.00 2.18
94 95 2.461695 CCTCTTGCCTCACTCTCCTAA 58.538 52.381 0.00 0.00 0.00 2.69
95 96 1.342474 CCCTCTTGCCTCACTCTCCTA 60.342 57.143 0.00 0.00 0.00 2.94
96 97 0.617249 CCCTCTTGCCTCACTCTCCT 60.617 60.000 0.00 0.00 0.00 3.69
97 98 1.904032 CCCTCTTGCCTCACTCTCC 59.096 63.158 0.00 0.00 0.00 3.71
98 99 1.220477 GCCCTCTTGCCTCACTCTC 59.780 63.158 0.00 0.00 0.00 3.20
99 100 3.397906 GCCCTCTTGCCTCACTCT 58.602 61.111 0.00 0.00 0.00 3.24
107 108 2.270986 CCACAGTTGGCCCTCTTGC 61.271 63.158 0.00 0.00 35.56 4.01
108 109 1.604593 CCCACAGTTGGCCCTCTTG 60.605 63.158 0.00 0.00 42.35 3.02
109 110 2.846532 CCCACAGTTGGCCCTCTT 59.153 61.111 0.00 0.00 42.35 2.85
110 111 3.971702 GCCCACAGTTGGCCCTCT 61.972 66.667 4.14 0.00 43.33 3.69
116 117 3.365265 GCCGAAGCCCACAGTTGG 61.365 66.667 0.00 0.00 43.50 3.77
126 127 3.279875 CATTAGCCCGGCCGAAGC 61.280 66.667 30.73 28.35 38.76 3.86
127 128 0.746563 TTTCATTAGCCCGGCCGAAG 60.747 55.000 30.73 19.28 0.00 3.79
128 129 0.746563 CTTTCATTAGCCCGGCCGAA 60.747 55.000 30.73 13.96 0.00 4.30
129 130 1.153249 CTTTCATTAGCCCGGCCGA 60.153 57.895 30.73 6.25 0.00 5.54
130 131 2.186826 CCTTTCATTAGCCCGGCCG 61.187 63.158 21.04 21.04 0.00 6.13
131 132 1.828224 CCCTTTCATTAGCCCGGCC 60.828 63.158 5.55 0.00 0.00 6.13
132 133 0.395173 TTCCCTTTCATTAGCCCGGC 60.395 55.000 0.00 0.00 0.00 6.13
133 134 1.956477 CATTCCCTTTCATTAGCCCGG 59.044 52.381 0.00 0.00 0.00 5.73
134 135 2.654863 ACATTCCCTTTCATTAGCCCG 58.345 47.619 0.00 0.00 0.00 6.13
135 136 4.341235 GGTTACATTCCCTTTCATTAGCCC 59.659 45.833 0.00 0.00 0.00 5.19
136 137 4.341235 GGGTTACATTCCCTTTCATTAGCC 59.659 45.833 0.00 0.00 41.58 3.93
137 138 4.341235 GGGGTTACATTCCCTTTCATTAGC 59.659 45.833 0.96 0.00 44.07 3.09
138 139 4.893524 GGGGGTTACATTCCCTTTCATTAG 59.106 45.833 0.00 0.00 44.07 1.73
139 140 4.874199 GGGGGTTACATTCCCTTTCATTA 58.126 43.478 0.00 0.00 44.07 1.90
140 141 3.719871 GGGGGTTACATTCCCTTTCATT 58.280 45.455 0.00 0.00 44.07 2.57
141 142 3.398318 GGGGGTTACATTCCCTTTCAT 57.602 47.619 0.00 0.00 44.07 2.57
142 143 2.911552 GGGGGTTACATTCCCTTTCA 57.088 50.000 0.00 0.00 44.07 2.69
147 148 3.468071 AAAGAAGGGGGTTACATTCCC 57.532 47.619 0.00 0.00 43.90 3.97
148 149 5.188988 ACTAAAGAAGGGGGTTACATTCC 57.811 43.478 0.00 0.00 0.00 3.01
149 150 6.354938 CCTACTAAAGAAGGGGGTTACATTC 58.645 44.000 0.00 0.00 0.00 2.67
150 151 6.323210 CCTACTAAAGAAGGGGGTTACATT 57.677 41.667 0.00 0.00 0.00 2.71
151 152 5.970501 CCTACTAAAGAAGGGGGTTACAT 57.029 43.478 0.00 0.00 0.00 2.29
160 161 3.707102 CCTCTCCACCCTACTAAAGAAGG 59.293 52.174 0.00 0.00 0.00 3.46
161 162 4.160626 CACCTCTCCACCCTACTAAAGAAG 59.839 50.000 0.00 0.00 0.00 2.85
162 163 4.094476 CACCTCTCCACCCTACTAAAGAA 58.906 47.826 0.00 0.00 0.00 2.52
163 164 3.565890 CCACCTCTCCACCCTACTAAAGA 60.566 52.174 0.00 0.00 0.00 2.52
164 165 2.766828 CCACCTCTCCACCCTACTAAAG 59.233 54.545 0.00 0.00 0.00 1.85
165 166 2.561297 CCCACCTCTCCACCCTACTAAA 60.561 54.545 0.00 0.00 0.00 1.85
166 167 1.007963 CCCACCTCTCCACCCTACTAA 59.992 57.143 0.00 0.00 0.00 2.24
167 168 0.635009 CCCACCTCTCCACCCTACTA 59.365 60.000 0.00 0.00 0.00 1.82
168 169 1.392534 CCCACCTCTCCACCCTACT 59.607 63.158 0.00 0.00 0.00 2.57
169 170 1.689582 CCCCACCTCTCCACCCTAC 60.690 68.421 0.00 0.00 0.00 3.18
170 171 2.784984 CCCCACCTCTCCACCCTA 59.215 66.667 0.00 0.00 0.00 3.53
171 172 4.354943 CCCCCACCTCTCCACCCT 62.355 72.222 0.00 0.00 0.00 4.34
172 173 4.348495 TCCCCCACCTCTCCACCC 62.348 72.222 0.00 0.00 0.00 4.61
173 174 2.177529 TAGTCCCCCACCTCTCCACC 62.178 65.000 0.00 0.00 0.00 4.61
174 175 0.688087 CTAGTCCCCCACCTCTCCAC 60.688 65.000 0.00 0.00 0.00 4.02
175 176 1.153695 ACTAGTCCCCCACCTCTCCA 61.154 60.000 0.00 0.00 0.00 3.86
176 177 0.688087 CACTAGTCCCCCACCTCTCC 60.688 65.000 0.00 0.00 0.00 3.71
177 178 0.335361 TCACTAGTCCCCCACCTCTC 59.665 60.000 0.00 0.00 0.00 3.20
178 179 0.336737 CTCACTAGTCCCCCACCTCT 59.663 60.000 0.00 0.00 0.00 3.69
179 180 0.688087 CCTCACTAGTCCCCCACCTC 60.688 65.000 0.00 0.00 0.00 3.85
180 181 1.153695 TCCTCACTAGTCCCCCACCT 61.154 60.000 0.00 0.00 0.00 4.00
181 182 0.688087 CTCCTCACTAGTCCCCCACC 60.688 65.000 0.00 0.00 0.00 4.61
182 183 0.041386 ACTCCTCACTAGTCCCCCAC 59.959 60.000 0.00 0.00 0.00 4.61
183 184 1.690010 TACTCCTCACTAGTCCCCCA 58.310 55.000 0.00 0.00 0.00 4.96
184 185 2.842645 TTACTCCTCACTAGTCCCCC 57.157 55.000 0.00 0.00 0.00 5.40
185 186 4.470304 ACAAATTACTCCTCACTAGTCCCC 59.530 45.833 0.00 0.00 0.00 4.81
186 187 5.678955 ACAAATTACTCCTCACTAGTCCC 57.321 43.478 0.00 0.00 0.00 4.46
187 188 6.154021 TGGTACAAATTACTCCTCACTAGTCC 59.846 42.308 0.00 0.00 31.92 3.85
188 189 7.166691 TGGTACAAATTACTCCTCACTAGTC 57.833 40.000 0.00 0.00 31.92 2.59
191 192 8.212312 TTTGTTGGTACAAATTACTCCTCACTA 58.788 33.333 0.00 0.00 46.46 2.74
192 193 7.057894 TTTGTTGGTACAAATTACTCCTCACT 58.942 34.615 0.00 0.00 46.46 3.41
193 194 7.266922 TTTGTTGGTACAAATTACTCCTCAC 57.733 36.000 0.00 0.00 46.46 3.51
206 207 5.066634 CCACATTACACAGTTTGTTGGTACA 59.933 40.000 0.00 0.00 39.91 2.90
207 208 5.066764 ACCACATTACACAGTTTGTTGGTAC 59.933 40.000 2.34 0.00 41.80 3.34
208 209 5.066634 CACCACATTACACAGTTTGTTGGTA 59.933 40.000 3.73 0.00 41.72 3.25
209 210 4.020543 ACCACATTACACAGTTTGTTGGT 58.979 39.130 0.00 0.00 39.73 3.67
210 211 4.358851 CACCACATTACACAGTTTGTTGG 58.641 43.478 0.00 0.00 39.91 3.77
211 212 4.097135 TCCACCACATTACACAGTTTGTTG 59.903 41.667 0.00 0.00 39.91 3.33
212 213 4.274147 TCCACCACATTACACAGTTTGTT 58.726 39.130 0.00 0.00 39.91 2.83
213 214 3.882888 CTCCACCACATTACACAGTTTGT 59.117 43.478 0.00 0.00 42.84 2.83
214 215 3.253188 CCTCCACCACATTACACAGTTTG 59.747 47.826 0.00 0.00 0.00 2.93
215 216 3.486383 CCTCCACCACATTACACAGTTT 58.514 45.455 0.00 0.00 0.00 2.66
216 217 2.814097 GCCTCCACCACATTACACAGTT 60.814 50.000 0.00 0.00 0.00 3.16
217 218 1.271379 GCCTCCACCACATTACACAGT 60.271 52.381 0.00 0.00 0.00 3.55
218 219 1.003580 AGCCTCCACCACATTACACAG 59.996 52.381 0.00 0.00 0.00 3.66
219 220 1.064003 AGCCTCCACCACATTACACA 58.936 50.000 0.00 0.00 0.00 3.72
220 221 2.200373 AAGCCTCCACCACATTACAC 57.800 50.000 0.00 0.00 0.00 2.90
221 222 2.375174 AGAAAGCCTCCACCACATTACA 59.625 45.455 0.00 0.00 0.00 2.41
222 223 3.073274 AGAAAGCCTCCACCACATTAC 57.927 47.619 0.00 0.00 0.00 1.89
223 224 3.806949 AAGAAAGCCTCCACCACATTA 57.193 42.857 0.00 0.00 0.00 1.90
224 225 2.629617 CAAAGAAAGCCTCCACCACATT 59.370 45.455 0.00 0.00 0.00 2.71
225 226 2.242043 CAAAGAAAGCCTCCACCACAT 58.758 47.619 0.00 0.00 0.00 3.21
226 227 1.691196 CAAAGAAAGCCTCCACCACA 58.309 50.000 0.00 0.00 0.00 4.17
227 228 0.315251 GCAAAGAAAGCCTCCACCAC 59.685 55.000 0.00 0.00 0.00 4.16
228 229 2.732289 GCAAAGAAAGCCTCCACCA 58.268 52.632 0.00 0.00 0.00 4.17
236 237 7.953158 ATTAAAGAAGAAAGGCAAAGAAAGC 57.047 32.000 0.00 0.00 0.00 3.51
293 294 7.127917 CACCTGCAGTGTTTTTAAACTTTTT 57.872 32.000 13.81 0.00 41.93 1.94
294 295 6.720012 CACCTGCAGTGTTTTTAAACTTTT 57.280 33.333 13.81 0.00 41.93 2.27
330 331 0.465642 GGAAGGGTTGCCGAATAGGG 60.466 60.000 0.00 0.00 41.48 3.53
331 332 3.095922 GGAAGGGTTGCCGAATAGG 57.904 57.895 0.00 0.00 44.97 2.57
351 352 2.707849 TAGAACCACGCTCCGCTCC 61.708 63.158 0.00 0.00 0.00 4.70
352 353 1.516603 GTAGAACCACGCTCCGCTC 60.517 63.158 0.00 0.00 0.00 5.03
353 354 2.572284 GTAGAACCACGCTCCGCT 59.428 61.111 0.00 0.00 0.00 5.52
354 355 2.508663 GGTAGAACCACGCTCCGC 60.509 66.667 0.00 0.00 38.42 5.54
355 356 2.183555 GGGTAGAACCACGCTCCG 59.816 66.667 0.00 0.00 41.02 4.63
356 357 2.183555 CGGGTAGAACCACGCTCC 59.816 66.667 0.00 0.00 41.02 4.70
357 358 2.508663 GCGGGTAGAACCACGCTC 60.509 66.667 18.49 0.00 46.80 5.03
360 361 2.183555 GGAGCGGGTAGAACCACG 59.816 66.667 0.00 1.06 41.02 4.94
361 362 0.685458 TAGGGAGCGGGTAGAACCAC 60.685 60.000 0.00 0.00 41.02 4.16
362 363 0.041535 TTAGGGAGCGGGTAGAACCA 59.958 55.000 0.00 0.00 41.02 3.67
363 364 1.197812 TTTAGGGAGCGGGTAGAACC 58.802 55.000 0.00 0.00 37.60 3.62
364 365 2.484947 CCATTTAGGGAGCGGGTAGAAC 60.485 54.545 0.00 0.00 0.00 3.01
365 366 1.766496 CCATTTAGGGAGCGGGTAGAA 59.234 52.381 0.00 0.00 0.00 2.10
366 367 1.343681 ACCATTTAGGGAGCGGGTAGA 60.344 52.381 0.00 0.00 43.89 2.59
367 368 1.129058 ACCATTTAGGGAGCGGGTAG 58.871 55.000 0.00 0.00 43.89 3.18
368 369 2.435437 GTTACCATTTAGGGAGCGGGTA 59.565 50.000 0.00 0.00 43.89 3.69
369 370 1.211212 GTTACCATTTAGGGAGCGGGT 59.789 52.381 0.00 0.00 43.89 5.28
370 371 1.489230 AGTTACCATTTAGGGAGCGGG 59.511 52.381 0.00 0.00 43.89 6.13
371 372 3.133362 TGTAGTTACCATTTAGGGAGCGG 59.867 47.826 0.00 0.00 43.89 5.52
372 373 4.369182 CTGTAGTTACCATTTAGGGAGCG 58.631 47.826 0.00 0.00 43.89 5.03
373 374 4.704965 CCTGTAGTTACCATTTAGGGAGC 58.295 47.826 0.00 0.00 43.89 4.70
374 375 4.444449 GGCCTGTAGTTACCATTTAGGGAG 60.444 50.000 0.00 0.00 43.89 4.30
375 376 3.457012 GGCCTGTAGTTACCATTTAGGGA 59.543 47.826 0.00 0.00 43.89 4.20
376 377 3.743269 CGGCCTGTAGTTACCATTTAGGG 60.743 52.174 0.00 0.00 43.89 3.53
377 378 3.463944 CGGCCTGTAGTTACCATTTAGG 58.536 50.000 0.00 0.00 45.67 2.69
378 379 2.870411 GCGGCCTGTAGTTACCATTTAG 59.130 50.000 0.00 0.00 0.00 1.85
379 380 2.502538 AGCGGCCTGTAGTTACCATTTA 59.497 45.455 0.00 0.00 0.00 1.40
380 381 1.280998 AGCGGCCTGTAGTTACCATTT 59.719 47.619 0.00 0.00 0.00 2.32
381 382 0.909623 AGCGGCCTGTAGTTACCATT 59.090 50.000 0.00 0.00 0.00 3.16
382 383 0.464452 GAGCGGCCTGTAGTTACCAT 59.536 55.000 0.00 0.00 0.00 3.55
383 384 1.610554 GGAGCGGCCTGTAGTTACCA 61.611 60.000 0.00 0.00 0.00 3.25
384 385 1.143401 GGAGCGGCCTGTAGTTACC 59.857 63.158 0.00 0.00 0.00 2.85
385 386 1.226888 CGGAGCGGCCTGTAGTTAC 60.227 63.158 0.00 0.00 0.00 2.50
386 387 3.203442 CGGAGCGGCCTGTAGTTA 58.797 61.111 0.00 0.00 0.00 2.24
405 406 1.028905 CTTTGCAACTCCCGTTTGGA 58.971 50.000 0.00 0.00 42.41 3.53
406 407 0.597377 GCTTTGCAACTCCCGTTTGG 60.597 55.000 0.00 0.00 0.00 3.28
407 408 0.934436 CGCTTTGCAACTCCCGTTTG 60.934 55.000 0.00 0.00 0.00 2.93
408 409 1.358759 CGCTTTGCAACTCCCGTTT 59.641 52.632 0.00 0.00 0.00 3.60
409 410 2.551912 CCGCTTTGCAACTCCCGTT 61.552 57.895 0.00 0.00 0.00 4.44
410 411 2.978010 CCGCTTTGCAACTCCCGT 60.978 61.111 0.00 0.00 0.00 5.28
411 412 2.668212 TCCGCTTTGCAACTCCCG 60.668 61.111 0.00 0.00 0.00 5.14
412 413 2.335712 CCTCCGCTTTGCAACTCCC 61.336 63.158 0.00 0.00 0.00 4.30
413 414 2.335712 CCCTCCGCTTTGCAACTCC 61.336 63.158 0.00 0.00 0.00 3.85
414 415 0.678048 ATCCCTCCGCTTTGCAACTC 60.678 55.000 0.00 0.00 0.00 3.01
415 416 0.962356 CATCCCTCCGCTTTGCAACT 60.962 55.000 0.00 0.00 0.00 3.16
416 417 1.508088 CATCCCTCCGCTTTGCAAC 59.492 57.895 0.00 0.00 0.00 4.17
417 418 2.342650 GCATCCCTCCGCTTTGCAA 61.343 57.895 0.00 0.00 33.58 4.08
418 419 2.751436 GCATCCCTCCGCTTTGCA 60.751 61.111 0.00 0.00 33.58 4.08
419 420 3.521796 GGCATCCCTCCGCTTTGC 61.522 66.667 0.00 0.00 0.00 3.68
420 421 3.204827 CGGCATCCCTCCGCTTTG 61.205 66.667 0.00 0.00 40.46 2.77
421 422 2.966732 TTCGGCATCCCTCCGCTTT 61.967 57.895 0.00 0.00 46.05 3.51
422 423 3.399181 TTCGGCATCCCTCCGCTT 61.399 61.111 0.00 0.00 46.05 4.68
423 424 4.162690 GTTCGGCATCCCTCCGCT 62.163 66.667 0.00 0.00 46.05 5.52
434 435 1.518792 GACTAAGGGAGCGTTCGGC 60.519 63.158 0.00 0.00 44.05 5.54
435 436 0.100861 GAGACTAAGGGAGCGTTCGG 59.899 60.000 0.00 0.00 0.00 4.30
436 437 0.100861 GGAGACTAAGGGAGCGTTCG 59.899 60.000 0.00 0.00 0.00 3.95
437 438 1.135333 CTGGAGACTAAGGGAGCGTTC 59.865 57.143 0.00 0.00 0.00 3.95
438 439 1.187087 CTGGAGACTAAGGGAGCGTT 58.813 55.000 0.00 0.00 0.00 4.84
439 440 0.331954 TCTGGAGACTAAGGGAGCGT 59.668 55.000 0.00 0.00 0.00 5.07
440 441 1.475403 TTCTGGAGACTAAGGGAGCG 58.525 55.000 0.00 0.00 0.00 5.03
441 442 2.567615 TGTTTCTGGAGACTAAGGGAGC 59.432 50.000 0.00 0.00 0.00 4.70
442 443 4.467795 TCATGTTTCTGGAGACTAAGGGAG 59.532 45.833 0.00 0.00 0.00 4.30
443 444 4.425772 TCATGTTTCTGGAGACTAAGGGA 58.574 43.478 0.00 0.00 0.00 4.20
444 445 4.223923 ACTCATGTTTCTGGAGACTAAGGG 59.776 45.833 0.00 0.00 33.00 3.95
445 446 5.047021 TGACTCATGTTTCTGGAGACTAAGG 60.047 44.000 0.00 0.00 33.00 2.69
446 447 6.030548 TGACTCATGTTTCTGGAGACTAAG 57.969 41.667 0.00 0.00 33.00 2.18
554 555 2.563620 GGCCTATCAGTTAGGGAGTAGC 59.436 54.545 0.00 0.00 46.77 3.58
560 561 2.104963 GGACTTGGCCTATCAGTTAGGG 59.895 54.545 3.32 0.00 46.77 3.53
570 572 1.550130 CGAGTTGGGGACTTGGCCTA 61.550 60.000 3.32 0.00 39.19 3.93
582 584 2.959516 TCATGCAAGTAGACGAGTTGG 58.040 47.619 5.44 0.00 38.70 3.77
653 666 2.352960 GTCCATCTTCCACGAAATGCTC 59.647 50.000 0.00 0.00 0.00 4.26
654 667 2.359900 GTCCATCTTCCACGAAATGCT 58.640 47.619 0.00 0.00 0.00 3.79
683 696 4.800993 GGAGATGATCCGCAGATTTATACG 59.199 45.833 0.00 0.00 38.67 3.06
697 710 4.116238 GTTTCTCAAGACCGGAGATGATC 58.884 47.826 9.46 0.00 40.82 2.92
708 721 4.021894 TCAGAGGTAGCAGTTTCTCAAGAC 60.022 45.833 0.00 0.00 0.00 3.01
711 724 4.955811 TTCAGAGGTAGCAGTTTCTCAA 57.044 40.909 0.00 0.00 0.00 3.02
721 734 9.771534 AGTCTTATATTTTGATTCAGAGGTAGC 57.228 33.333 0.00 0.00 0.00 3.58
772 785 9.490663 CTCGGTATCAAAATACAAAATGTTCTC 57.509 33.333 0.00 0.00 39.69 2.87
774 787 8.455682 TCCTCGGTATCAAAATACAAAATGTTC 58.544 33.333 0.00 0.00 39.69 3.18
776 789 7.610305 ACTCCTCGGTATCAAAATACAAAATGT 59.390 33.333 0.00 0.00 39.69 2.71
777 790 7.985476 ACTCCTCGGTATCAAAATACAAAATG 58.015 34.615 0.00 0.00 39.69 2.32
778 791 9.106070 GTACTCCTCGGTATCAAAATACAAAAT 57.894 33.333 0.00 0.00 39.69 1.82
783 796 9.978044 ATTTAGTACTCCTCGGTATCAAAATAC 57.022 33.333 0.00 0.00 37.60 1.89
792 805 4.821805 CCGGTAATTTAGTACTCCTCGGTA 59.178 45.833 0.00 0.00 0.00 4.02
861 874 0.554792 AGCTTCCTGCCCATGCTTAT 59.445 50.000 0.00 0.00 44.23 1.73
863 876 0.969409 GAAGCTTCCTGCCCATGCTT 60.969 55.000 15.97 0.00 45.15 3.91
958 980 0.464373 ATGTGCTTAGTGGCCGATGG 60.464 55.000 0.00 0.00 0.00 3.51
970 992 0.952497 CGGTGCTGACTGATGTGCTT 60.952 55.000 0.00 0.00 0.00 3.91
971 993 1.375140 CGGTGCTGACTGATGTGCT 60.375 57.895 0.00 0.00 0.00 4.40
972 994 3.031964 GCGGTGCTGACTGATGTGC 62.032 63.158 0.00 0.00 0.00 4.57
973 995 1.632948 CTGCGGTGCTGACTGATGTG 61.633 60.000 0.00 0.00 0.00 3.21
974 996 1.375140 CTGCGGTGCTGACTGATGT 60.375 57.895 0.00 0.00 0.00 3.06
977 999 1.300931 GTTCTGCGGTGCTGACTGA 60.301 57.895 0.00 0.00 36.32 3.41
1287 1311 0.687920 TGTAGGCGTTGAACATGGGA 59.312 50.000 0.00 0.00 0.00 4.37
2414 2470 1.290203 CACATGGTACTCGGCATCAC 58.710 55.000 0.00 0.00 0.00 3.06
2424 2480 1.153429 GGCTCGTCCCACATGGTAC 60.153 63.158 0.00 0.00 34.77 3.34
2452 2508 2.936919 ACACTGGCTGAACTGAATCA 57.063 45.000 0.00 0.00 0.00 2.57
2464 2520 9.805966 GCAAAAAGTAAAATAAAATACACTGGC 57.194 29.630 0.00 0.00 0.00 4.85
2467 2523 9.198837 CCCGCAAAAAGTAAAATAAAATACACT 57.801 29.630 0.00 0.00 0.00 3.55
2468 2524 8.436970 CCCCGCAAAAAGTAAAATAAAATACAC 58.563 33.333 0.00 0.00 0.00 2.90
2469 2525 7.603024 CCCCCGCAAAAAGTAAAATAAAATACA 59.397 33.333 0.00 0.00 0.00 2.29
2470 2526 7.818446 TCCCCCGCAAAAAGTAAAATAAAATAC 59.182 33.333 0.00 0.00 0.00 1.89
2472 2528 6.770542 TCCCCCGCAAAAAGTAAAATAAAAT 58.229 32.000 0.00 0.00 0.00 1.82
2473 2529 6.170846 TCCCCCGCAAAAAGTAAAATAAAA 57.829 33.333 0.00 0.00 0.00 1.52
2475 2531 4.322123 GCTCCCCCGCAAAAAGTAAAATAA 60.322 41.667 0.00 0.00 0.00 1.40
2476 2532 3.193903 GCTCCCCCGCAAAAAGTAAAATA 59.806 43.478 0.00 0.00 0.00 1.40
2477 2533 2.028476 GCTCCCCCGCAAAAAGTAAAAT 60.028 45.455 0.00 0.00 0.00 1.82
2478 2534 1.341852 GCTCCCCCGCAAAAAGTAAAA 59.658 47.619 0.00 0.00 0.00 1.52
2479 2535 0.963225 GCTCCCCCGCAAAAAGTAAA 59.037 50.000 0.00 0.00 0.00 2.01
2480 2536 0.896479 GGCTCCCCCGCAAAAAGTAA 60.896 55.000 0.00 0.00 0.00 2.24
2481 2537 1.303806 GGCTCCCCCGCAAAAAGTA 60.304 57.895 0.00 0.00 0.00 2.24
2482 2538 2.600470 GGCTCCCCCGCAAAAAGT 60.600 61.111 0.00 0.00 0.00 2.66
2483 2539 2.600173 TGGCTCCCCCGCAAAAAG 60.600 61.111 0.00 0.00 35.87 2.27
2485 2541 3.897122 ACTGGCTCCCCCGCAAAA 61.897 61.111 0.00 0.00 35.87 2.44
2486 2542 4.659172 CACTGGCTCCCCCGCAAA 62.659 66.667 0.00 0.00 35.87 3.68
2489 2545 2.552231 AAATACACTGGCTCCCCCGC 62.552 60.000 0.00 0.00 35.87 6.13
2490 2546 0.834612 TAAATACACTGGCTCCCCCG 59.165 55.000 0.00 0.00 35.87 5.73
2491 2547 3.288092 CTTTAAATACACTGGCTCCCCC 58.712 50.000 0.00 0.00 0.00 5.40
2493 2549 3.621558 AGCTTTAAATACACTGGCTCCC 58.378 45.455 0.00 0.00 0.00 4.30
2494 2550 5.671493 TCTAGCTTTAAATACACTGGCTCC 58.329 41.667 0.00 0.00 0.00 4.70
2600 2720 3.633418 AGTCCTCTGTGTACATAGTCCC 58.367 50.000 17.92 6.42 0.00 4.46
2677 2798 4.887655 CCAGTATTTTTGGGTAGGTCATCC 59.112 45.833 0.00 0.00 31.87 3.51
2851 5199 2.492484 AGTCCGAACTGTCTGGACATAC 59.508 50.000 24.55 6.85 43.79 2.39
2858 5206 3.516578 GGGAAGTCCGAACTGTCTG 57.483 57.895 0.00 0.00 35.36 3.51
2906 5254 3.611970 TGGACATATACAAACAACCCCG 58.388 45.455 0.00 0.00 0.00 5.73
2927 5276 1.001641 GGGCCAGAGCTGACACAAT 60.002 57.895 4.39 0.00 39.73 2.71
2977 5326 4.779733 GAGAGGGAGGGCGTGGGA 62.780 72.222 0.00 0.00 0.00 4.37
2981 5803 2.279408 GGTAGAGAGGGAGGGCGT 59.721 66.667 0.00 0.00 0.00 5.68
2983 5805 0.400670 ATTGGGTAGAGAGGGAGGGC 60.401 60.000 0.00 0.00 0.00 5.19
2985 5807 2.478872 TGATTGGGTAGAGAGGGAGG 57.521 55.000 0.00 0.00 0.00 4.30
2989 5811 4.897509 TGCATATGATTGGGTAGAGAGG 57.102 45.455 6.97 0.00 0.00 3.69
3068 5890 9.125026 GTGTCAAATTTTATCCCTCATATGTCT 57.875 33.333 1.90 0.00 0.00 3.41
3138 5960 8.106462 TGTTAAATTCCAACTCTCATATGTCCA 58.894 33.333 1.90 0.00 0.00 4.02
3313 7725 1.956477 GATCAAGTGTTGTGGTGGCTT 59.044 47.619 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.