Multiple sequence alignment - TraesCS2A01G474300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G474300 chr2A 100.000 5042 0 0 1 5042 715417221 715412180 0.000000e+00 9311.0
1 TraesCS2A01G474300 chr2A 86.842 152 16 2 541 690 715416532 715416681 3.120000e-37 167.0
2 TraesCS2A01G474300 chr2B 89.264 2785 169 52 273 2964 694276612 694273865 0.000000e+00 3367.0
3 TraesCS2A01G474300 chr2B 87.558 1069 81 22 3959 4988 694272822 694271767 0.000000e+00 1190.0
4 TraesCS2A01G474300 chr2B 89.626 935 77 13 3038 3959 694273844 694272917 0.000000e+00 1171.0
5 TraesCS2A01G474300 chr2B 91.506 259 21 1 1 259 694324730 694324473 6.210000e-94 355.0
6 TraesCS2A01G474300 chr2B 82.828 198 27 6 3162 3356 430750019 430749826 2.410000e-38 171.0
7 TraesCS2A01G474300 chr2B 77.957 186 27 12 349 525 667259243 667259423 2.480000e-18 104.0
8 TraesCS2A01G474300 chr2D 92.400 1750 88 19 547 2257 577338910 577337167 0.000000e+00 2453.0
9 TraesCS2A01G474300 chr2D 88.973 1052 77 16 3959 4975 577334697 577333650 0.000000e+00 1264.0
10 TraesCS2A01G474300 chr2D 89.622 925 62 21 2257 3156 577336554 577335639 0.000000e+00 1146.0
11 TraesCS2A01G474300 chr2D 91.226 832 60 7 3140 3959 577335622 577334792 0.000000e+00 1120.0
12 TraesCS2A01G474300 chr2D 75.424 236 39 13 304 528 246704757 246704530 4.150000e-16 97.1
13 TraesCS2A01G474300 chr1D 88.542 192 18 3 538 725 455075310 455075501 3.930000e-56 230.0
14 TraesCS2A01G474300 chr1D 86.911 191 22 1 538 725 455075468 455075278 1.420000e-50 211.0
15 TraesCS2A01G474300 chr1D 92.941 85 5 1 538 621 355757057 355756973 6.850000e-24 122.0
16 TraesCS2A01G474300 chr1A 87.166 187 16 6 538 724 559234324 559234146 6.620000e-49 206.0
17 TraesCS2A01G474300 chr1A 78.307 189 31 6 16 203 438314076 438313897 4.130000e-21 113.0
18 TraesCS2A01G474300 chr6A 84.293 191 27 3 3168 3356 35188794 35188983 3.100000e-42 183.0
19 TraesCS2A01G474300 chr6A 86.486 74 10 0 1350 1423 599059731 599059804 1.160000e-11 82.4
20 TraesCS2A01G474300 chr4D 83.684 190 30 1 536 725 11371158 11370970 1.440000e-40 178.0
21 TraesCS2A01G474300 chr6D 83.254 209 14 10 538 725 464536571 464536779 6.710000e-39 172.0
22 TraesCS2A01G474300 chr6D 82.759 116 20 0 308 423 157676798 157676913 2.480000e-18 104.0
23 TraesCS2A01G474300 chr6D 75.000 232 41 14 306 528 131608735 131608958 1.930000e-14 91.6
24 TraesCS2A01G474300 chr6D 86.486 74 10 0 1350 1423 453021921 453021994 1.160000e-11 82.4
25 TraesCS2A01G474300 chr6B 83.246 191 29 2 535 725 704316594 704316407 6.710000e-39 172.0
26 TraesCS2A01G474300 chr6B 78.075 187 31 7 349 525 41708621 41708435 5.340000e-20 110.0
27 TraesCS2A01G474300 chr6B 86.486 74 10 0 1350 1423 688372548 688372621 1.160000e-11 82.4
28 TraesCS2A01G474300 chr4B 80.383 209 19 11 549 736 525268371 525268164 6.810000e-29 139.0
29 TraesCS2A01G474300 chr4B 82.759 145 21 3 3216 3358 532436252 532436394 5.300000e-25 126.0
30 TraesCS2A01G474300 chr3A 77.540 187 29 11 351 528 176148184 176148002 3.210000e-17 100.0
31 TraesCS2A01G474300 chr3A 76.757 185 40 3 11 194 435754438 435754620 3.210000e-17 100.0
32 TraesCS2A01G474300 chr1B 77.005 187 34 9 349 528 169002045 169001861 1.160000e-16 99.0
33 TraesCS2A01G474300 chr7A 85.882 85 12 0 306 390 38030517 38030601 1.930000e-14 91.6
34 TraesCS2A01G474300 chr5A 76.437 174 33 8 352 522 581297498 581297330 2.500000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G474300 chr2A 715412180 715417221 5041 True 9311.000000 9311 100.00000 1 5042 1 chr2A.!!$R1 5041
1 TraesCS2A01G474300 chr2B 694271767 694276612 4845 True 1909.333333 3367 88.81600 273 4988 3 chr2B.!!$R3 4715
2 TraesCS2A01G474300 chr2D 577333650 577338910 5260 True 1495.750000 2453 90.55525 547 4975 4 chr2D.!!$R2 4428

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
983 1013 0.035317 ACGCACATCAGCCTTTCAGA 59.965 50.0 0.00 0.00 0.00 3.27 F
1526 1565 0.106819 GTTCCATCTGCCTGCCTGAT 60.107 55.0 0.00 0.00 32.96 2.90 F
1578 1630 0.168568 GGTCGTCTGACTTCTCGTCC 59.831 60.0 6.21 0.00 44.83 4.79 F
1934 1990 0.394565 AGTGAGCTCTCAACCACCAC 59.605 55.0 16.19 1.56 41.85 4.16 F
3646 4412 0.033796 AGATCACCGGGGAAGACGTA 60.034 55.0 12.35 0.00 0.00 3.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 1975 0.035458 GACTGGGTGGTGGTTGAGAG 59.965 60.000 0.00 0.0 0.00 3.20 R
3348 4109 0.110295 ACATGTGCTAACCAGTGGCA 59.890 50.000 9.78 0.0 0.00 4.92 R
3360 4121 1.467374 GCGGTGGTTTCATACATGTGC 60.467 52.381 9.11 0.0 0.00 4.57 R
3758 4524 0.108424 GCTGCCTTCGAGACTGATGT 60.108 55.000 0.00 0.0 0.00 3.06 R
4990 5905 0.739561 GCGAGACATAGTCGTTCCCT 59.260 55.000 0.00 0.0 39.69 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.281761 AAGTGAGGGCGCTTGTGG 60.282 61.111 7.64 0.00 42.90 4.17
20 21 3.120086 AAGTGAGGGCGCTTGTGGT 62.120 57.895 7.64 0.00 42.90 4.16
21 22 3.050275 GTGAGGGCGCTTGTGGTC 61.050 66.667 7.64 0.00 0.00 4.02
22 23 3.241530 TGAGGGCGCTTGTGGTCT 61.242 61.111 7.64 0.00 0.00 3.85
23 24 2.032681 GAGGGCGCTTGTGGTCTT 59.967 61.111 7.64 0.00 0.00 3.01
24 25 2.032681 AGGGCGCTTGTGGTCTTC 59.967 61.111 7.64 0.00 0.00 2.87
25 26 2.032681 GGGCGCTTGTGGTCTTCT 59.967 61.111 7.64 0.00 0.00 2.85
26 27 1.192146 AGGGCGCTTGTGGTCTTCTA 61.192 55.000 7.64 0.00 0.00 2.10
27 28 0.107654 GGGCGCTTGTGGTCTTCTAT 60.108 55.000 7.64 0.00 0.00 1.98
28 29 1.679032 GGGCGCTTGTGGTCTTCTATT 60.679 52.381 7.64 0.00 0.00 1.73
29 30 2.084546 GGCGCTTGTGGTCTTCTATTT 58.915 47.619 7.64 0.00 0.00 1.40
30 31 2.096013 GGCGCTTGTGGTCTTCTATTTC 59.904 50.000 7.64 0.00 0.00 2.17
31 32 3.003480 GCGCTTGTGGTCTTCTATTTCT 58.997 45.455 0.00 0.00 0.00 2.52
32 33 3.062774 GCGCTTGTGGTCTTCTATTTCTC 59.937 47.826 0.00 0.00 0.00 2.87
33 34 4.499183 CGCTTGTGGTCTTCTATTTCTCT 58.501 43.478 0.00 0.00 0.00 3.10
34 35 4.564769 CGCTTGTGGTCTTCTATTTCTCTC 59.435 45.833 0.00 0.00 0.00 3.20
35 36 4.873259 GCTTGTGGTCTTCTATTTCTCTCC 59.127 45.833 0.00 0.00 0.00 3.71
36 37 5.337975 GCTTGTGGTCTTCTATTTCTCTCCT 60.338 44.000 0.00 0.00 0.00 3.69
37 38 5.923733 TGTGGTCTTCTATTTCTCTCCTC 57.076 43.478 0.00 0.00 0.00 3.71
38 39 5.333581 TGTGGTCTTCTATTTCTCTCCTCA 58.666 41.667 0.00 0.00 0.00 3.86
39 40 5.780282 TGTGGTCTTCTATTTCTCTCCTCAA 59.220 40.000 0.00 0.00 0.00 3.02
40 41 6.103330 GTGGTCTTCTATTTCTCTCCTCAAC 58.897 44.000 0.00 0.00 0.00 3.18
41 42 5.780282 TGGTCTTCTATTTCTCTCCTCAACA 59.220 40.000 0.00 0.00 0.00 3.33
42 43 6.103330 GGTCTTCTATTTCTCTCCTCAACAC 58.897 44.000 0.00 0.00 0.00 3.32
43 44 6.103330 GTCTTCTATTTCTCTCCTCAACACC 58.897 44.000 0.00 0.00 0.00 4.16
44 45 5.187967 TCTTCTATTTCTCTCCTCAACACCC 59.812 44.000 0.00 0.00 0.00 4.61
45 46 3.775316 TCTATTTCTCTCCTCAACACCCC 59.225 47.826 0.00 0.00 0.00 4.95
46 47 1.814429 TTTCTCTCCTCAACACCCCA 58.186 50.000 0.00 0.00 0.00 4.96
47 48 1.056660 TTCTCTCCTCAACACCCCAC 58.943 55.000 0.00 0.00 0.00 4.61
48 49 0.105194 TCTCTCCTCAACACCCCACA 60.105 55.000 0.00 0.00 0.00 4.17
49 50 0.987294 CTCTCCTCAACACCCCACAT 59.013 55.000 0.00 0.00 0.00 3.21
50 51 2.187958 CTCTCCTCAACACCCCACATA 58.812 52.381 0.00 0.00 0.00 2.29
51 52 2.571653 CTCTCCTCAACACCCCACATAA 59.428 50.000 0.00 0.00 0.00 1.90
52 53 2.983192 TCTCCTCAACACCCCACATAAA 59.017 45.455 0.00 0.00 0.00 1.40
53 54 3.009033 TCTCCTCAACACCCCACATAAAG 59.991 47.826 0.00 0.00 0.00 1.85
54 55 2.714250 TCCTCAACACCCCACATAAAGT 59.286 45.455 0.00 0.00 0.00 2.66
66 67 4.327854 CACATAAAGTGGCGAAGAGAAC 57.672 45.455 0.00 0.00 44.69 3.01
67 68 3.125316 CACATAAAGTGGCGAAGAGAACC 59.875 47.826 0.00 0.00 44.69 3.62
68 69 2.467566 TAAAGTGGCGAAGAGAACCC 57.532 50.000 0.00 0.00 0.00 4.11
69 70 0.472471 AAAGTGGCGAAGAGAACCCA 59.528 50.000 0.00 0.00 0.00 4.51
70 71 0.250338 AAGTGGCGAAGAGAACCCAC 60.250 55.000 0.57 0.57 46.22 4.61
71 72 1.371558 GTGGCGAAGAGAACCCACT 59.628 57.895 0.00 0.00 43.34 4.00
72 73 0.606604 GTGGCGAAGAGAACCCACTA 59.393 55.000 0.00 0.00 43.34 2.74
73 74 1.207329 GTGGCGAAGAGAACCCACTAT 59.793 52.381 0.00 0.00 43.34 2.12
74 75 2.429610 GTGGCGAAGAGAACCCACTATA 59.570 50.000 0.00 0.00 43.34 1.31
75 76 3.069729 GTGGCGAAGAGAACCCACTATAT 59.930 47.826 0.00 0.00 43.34 0.86
76 77 4.280174 GTGGCGAAGAGAACCCACTATATA 59.720 45.833 0.00 0.00 43.34 0.86
77 78 5.047235 GTGGCGAAGAGAACCCACTATATAT 60.047 44.000 0.00 0.00 43.34 0.86
78 79 6.152323 GTGGCGAAGAGAACCCACTATATATA 59.848 42.308 0.00 0.00 43.34 0.86
79 80 6.152323 TGGCGAAGAGAACCCACTATATATAC 59.848 42.308 0.00 0.00 0.00 1.47
80 81 6.152323 GGCGAAGAGAACCCACTATATATACA 59.848 42.308 0.00 0.00 0.00 2.29
81 82 7.251994 GCGAAGAGAACCCACTATATATACAG 58.748 42.308 0.00 0.00 0.00 2.74
82 83 7.628794 GCGAAGAGAACCCACTATATATACAGG 60.629 44.444 0.00 0.00 0.00 4.00
83 84 7.393796 CGAAGAGAACCCACTATATATACAGGT 59.606 40.741 0.00 2.75 0.00 4.00
84 85 8.653036 AAGAGAACCCACTATATATACAGGTC 57.347 38.462 0.00 0.00 0.00 3.85
85 86 8.002431 AGAGAACCCACTATATATACAGGTCT 57.998 38.462 0.00 2.97 0.00 3.85
86 87 8.110908 AGAGAACCCACTATATATACAGGTCTC 58.889 40.741 12.82 12.82 0.00 3.36
87 88 7.766628 AGAACCCACTATATATACAGGTCTCA 58.233 38.462 0.00 0.00 0.00 3.27
88 89 7.670559 AGAACCCACTATATATACAGGTCTCAC 59.329 40.741 0.00 0.00 0.00 3.51
89 90 6.860034 ACCCACTATATATACAGGTCTCACA 58.140 40.000 0.00 0.00 0.00 3.58
90 91 6.720288 ACCCACTATATATACAGGTCTCACAC 59.280 42.308 0.00 0.00 0.00 3.82
99 100 3.917072 GGTCTCACACCTCCTCAAC 57.083 57.895 0.00 0.00 42.84 3.18
100 101 1.343069 GGTCTCACACCTCCTCAACT 58.657 55.000 0.00 0.00 42.84 3.16
101 102 1.694696 GGTCTCACACCTCCTCAACTT 59.305 52.381 0.00 0.00 42.84 2.66
102 103 2.104963 GGTCTCACACCTCCTCAACTTT 59.895 50.000 0.00 0.00 42.84 2.66
103 104 3.394719 GTCTCACACCTCCTCAACTTTC 58.605 50.000 0.00 0.00 0.00 2.62
104 105 2.035961 TCTCACACCTCCTCAACTTTCG 59.964 50.000 0.00 0.00 0.00 3.46
105 106 1.070134 TCACACCTCCTCAACTTTCGG 59.930 52.381 0.00 0.00 0.00 4.30
106 107 0.396811 ACACCTCCTCAACTTTCGGG 59.603 55.000 0.00 0.00 0.00 5.14
107 108 0.685097 CACCTCCTCAACTTTCGGGA 59.315 55.000 0.00 0.00 0.00 5.14
108 109 0.685660 ACCTCCTCAACTTTCGGGAC 59.314 55.000 0.00 0.00 0.00 4.46
128 129 6.570692 GGGACGAGATTAAACATTAGAGTCA 58.429 40.000 0.00 0.00 0.00 3.41
129 130 6.476053 GGGACGAGATTAAACATTAGAGTCAC 59.524 42.308 0.00 0.00 0.00 3.67
130 131 6.476053 GGACGAGATTAAACATTAGAGTCACC 59.524 42.308 0.00 0.00 0.00 4.02
131 132 6.931838 ACGAGATTAAACATTAGAGTCACCA 58.068 36.000 0.00 0.00 0.00 4.17
132 133 6.812160 ACGAGATTAAACATTAGAGTCACCAC 59.188 38.462 0.00 0.00 0.00 4.16
133 134 7.036220 CGAGATTAAACATTAGAGTCACCACT 58.964 38.462 0.00 0.00 34.57 4.00
134 135 7.545965 CGAGATTAAACATTAGAGTCACCACTT 59.454 37.037 0.00 0.00 30.63 3.16
135 136 8.553459 AGATTAAACATTAGAGTCACCACTTG 57.447 34.615 0.00 0.00 30.63 3.16
136 137 8.157476 AGATTAAACATTAGAGTCACCACTTGT 58.843 33.333 0.00 0.00 30.63 3.16
137 138 8.691661 ATTAAACATTAGAGTCACCACTTGTT 57.308 30.769 0.00 0.00 33.21 2.83
138 139 9.787435 ATTAAACATTAGAGTCACCACTTGTTA 57.213 29.630 0.00 0.00 31.43 2.41
139 140 9.787435 TTAAACATTAGAGTCACCACTTGTTAT 57.213 29.630 0.00 0.00 31.43 1.89
140 141 8.691661 AAACATTAGAGTCACCACTTGTTATT 57.308 30.769 0.00 0.00 31.43 1.40
141 142 8.691661 AACATTAGAGTCACCACTTGTTATTT 57.308 30.769 0.00 0.00 31.05 1.40
142 143 8.691661 ACATTAGAGTCACCACTTGTTATTTT 57.308 30.769 0.00 0.00 30.63 1.82
143 144 9.787435 ACATTAGAGTCACCACTTGTTATTTTA 57.213 29.630 0.00 0.00 30.63 1.52
145 146 9.787435 ATTAGAGTCACCACTTGTTATTTTACA 57.213 29.630 0.00 0.00 30.63 2.41
146 147 7.492352 AGAGTCACCACTTGTTATTTTACAC 57.508 36.000 0.00 0.00 30.63 2.90
147 148 7.051623 AGAGTCACCACTTGTTATTTTACACA 58.948 34.615 0.00 0.00 30.63 3.72
148 149 7.719633 AGAGTCACCACTTGTTATTTTACACAT 59.280 33.333 0.00 0.00 30.63 3.21
149 150 7.648142 AGTCACCACTTGTTATTTTACACATG 58.352 34.615 0.00 0.00 0.00 3.21
150 151 6.861055 GTCACCACTTGTTATTTTACACATGG 59.139 38.462 0.00 0.00 38.43 3.66
151 152 6.773200 TCACCACTTGTTATTTTACACATGGA 59.227 34.615 10.74 0.00 37.02 3.41
152 153 6.861055 CACCACTTGTTATTTTACACATGGAC 59.139 38.462 10.74 0.00 37.02 4.02
153 154 6.015772 ACCACTTGTTATTTTACACATGGACC 60.016 38.462 10.74 0.00 37.02 4.46
154 155 6.015856 CCACTTGTTATTTTACACATGGACCA 60.016 38.462 0.00 0.00 36.22 4.02
155 156 6.861055 CACTTGTTATTTTACACATGGACCAC 59.139 38.462 0.00 0.00 0.00 4.16
156 157 6.775629 ACTTGTTATTTTACACATGGACCACT 59.224 34.615 0.00 0.00 0.00 4.00
157 158 7.286775 ACTTGTTATTTTACACATGGACCACTT 59.713 33.333 0.00 0.00 0.00 3.16
158 159 7.589958 TGTTATTTTACACATGGACCACTTT 57.410 32.000 0.00 0.00 0.00 2.66
159 160 7.429633 TGTTATTTTACACATGGACCACTTTG 58.570 34.615 0.00 0.00 0.00 2.77
160 161 7.285629 TGTTATTTTACACATGGACCACTTTGA 59.714 33.333 0.00 0.00 0.00 2.69
161 162 5.766150 TTTTACACATGGACCACTTTGAG 57.234 39.130 0.00 0.00 0.00 3.02
162 163 4.698201 TTACACATGGACCACTTTGAGA 57.302 40.909 0.00 0.00 0.00 3.27
163 164 3.795688 ACACATGGACCACTTTGAGAT 57.204 42.857 0.00 0.00 0.00 2.75
164 165 4.104383 ACACATGGACCACTTTGAGATT 57.896 40.909 0.00 0.00 0.00 2.40
165 166 4.473444 ACACATGGACCACTTTGAGATTT 58.527 39.130 0.00 0.00 0.00 2.17
166 167 4.895297 ACACATGGACCACTTTGAGATTTT 59.105 37.500 0.00 0.00 0.00 1.82
167 168 6.068010 ACACATGGACCACTTTGAGATTTTA 58.932 36.000 0.00 0.00 0.00 1.52
168 169 6.549364 ACACATGGACCACTTTGAGATTTTAA 59.451 34.615 0.00 0.00 0.00 1.52
169 170 7.069331 ACACATGGACCACTTTGAGATTTTAAA 59.931 33.333 0.00 0.00 0.00 1.52
170 171 7.925483 CACATGGACCACTTTGAGATTTTAAAA 59.075 33.333 2.51 2.51 0.00 1.52
171 172 8.482128 ACATGGACCACTTTGAGATTTTAAAAA 58.518 29.630 4.44 0.00 0.00 1.94
172 173 9.492973 CATGGACCACTTTGAGATTTTAAAAAT 57.507 29.630 4.44 0.00 0.00 1.82
174 175 9.323985 TGGACCACTTTGAGATTTTAAAAATTG 57.676 29.630 4.44 0.00 0.00 2.32
175 176 9.325198 GGACCACTTTGAGATTTTAAAAATTGT 57.675 29.630 4.44 0.00 0.00 2.71
184 185 9.225436 TGAGATTTTAAAAATTGTTAATGGGCC 57.775 29.630 4.44 0.00 0.00 5.80
185 186 9.225436 GAGATTTTAAAAATTGTTAATGGGCCA 57.775 29.630 9.61 9.61 0.00 5.36
186 187 9.752228 AGATTTTAAAAATTGTTAATGGGCCAT 57.248 25.926 14.78 14.78 0.00 4.40
187 188 9.786105 GATTTTAAAAATTGTTAATGGGCCATG 57.214 29.630 22.01 0.00 0.00 3.66
188 189 6.749923 TTAAAAATTGTTAATGGGCCATGC 57.250 33.333 22.01 13.90 0.00 4.06
199 200 3.692424 GGCCATGCCCATTCAATTC 57.308 52.632 0.00 0.00 44.06 2.17
200 201 0.107268 GGCCATGCCCATTCAATTCC 59.893 55.000 0.00 0.00 44.06 3.01
201 202 0.831966 GCCATGCCCATTCAATTCCA 59.168 50.000 0.00 0.00 0.00 3.53
202 203 1.209990 GCCATGCCCATTCAATTCCAA 59.790 47.619 0.00 0.00 0.00 3.53
203 204 2.158726 GCCATGCCCATTCAATTCCAAT 60.159 45.455 0.00 0.00 0.00 3.16
204 205 3.071312 GCCATGCCCATTCAATTCCAATA 59.929 43.478 0.00 0.00 0.00 1.90
205 206 4.263156 GCCATGCCCATTCAATTCCAATAT 60.263 41.667 0.00 0.00 0.00 1.28
206 207 5.046448 GCCATGCCCATTCAATTCCAATATA 60.046 40.000 0.00 0.00 0.00 0.86
207 208 6.352394 GCCATGCCCATTCAATTCCAATATAT 60.352 38.462 0.00 0.00 0.00 0.86
208 209 7.626390 CCATGCCCATTCAATTCCAATATATT 58.374 34.615 0.00 0.00 0.00 1.28
209 210 8.760735 CCATGCCCATTCAATTCCAATATATTA 58.239 33.333 0.00 0.00 0.00 0.98
210 211 9.590451 CATGCCCATTCAATTCCAATATATTAC 57.410 33.333 0.00 0.00 0.00 1.89
211 212 8.954834 TGCCCATTCAATTCCAATATATTACT 57.045 30.769 0.00 0.00 0.00 2.24
236 237 9.722056 CTAGCATTGACTTGTAAAATAATGACC 57.278 33.333 0.00 0.00 0.00 4.02
237 238 7.547227 AGCATTGACTTGTAAAATAATGACCC 58.453 34.615 0.00 0.00 0.00 4.46
238 239 6.472163 GCATTGACTTGTAAAATAATGACCCG 59.528 38.462 0.00 0.00 0.00 5.28
239 240 7.627513 GCATTGACTTGTAAAATAATGACCCGA 60.628 37.037 0.00 0.00 0.00 5.14
240 241 7.747155 TTGACTTGTAAAATAATGACCCGAA 57.253 32.000 0.00 0.00 0.00 4.30
241 242 7.747155 TGACTTGTAAAATAATGACCCGAAA 57.253 32.000 0.00 0.00 0.00 3.46
242 243 7.812648 TGACTTGTAAAATAATGACCCGAAAG 58.187 34.615 0.00 0.00 0.00 2.62
243 244 7.662258 TGACTTGTAAAATAATGACCCGAAAGA 59.338 33.333 0.00 0.00 0.00 2.52
244 245 8.575649 ACTTGTAAAATAATGACCCGAAAGAT 57.424 30.769 0.00 0.00 0.00 2.40
245 246 9.020731 ACTTGTAAAATAATGACCCGAAAGATT 57.979 29.630 0.00 0.00 0.00 2.40
250 251 7.761038 AAATAATGACCCGAAAGATTATCCC 57.239 36.000 0.00 0.00 0.00 3.85
251 252 4.788925 AATGACCCGAAAGATTATCCCA 57.211 40.909 0.00 0.00 0.00 4.37
252 253 3.553828 TGACCCGAAAGATTATCCCAC 57.446 47.619 0.00 0.00 0.00 4.61
253 254 2.841266 TGACCCGAAAGATTATCCCACA 59.159 45.455 0.00 0.00 0.00 4.17
254 255 3.264706 TGACCCGAAAGATTATCCCACAA 59.735 43.478 0.00 0.00 0.00 3.33
255 256 3.877508 GACCCGAAAGATTATCCCACAAG 59.122 47.826 0.00 0.00 0.00 3.16
256 257 3.265995 ACCCGAAAGATTATCCCACAAGT 59.734 43.478 0.00 0.00 0.00 3.16
257 258 4.472108 ACCCGAAAGATTATCCCACAAGTA 59.528 41.667 0.00 0.00 0.00 2.24
258 259 4.814771 CCCGAAAGATTATCCCACAAGTAC 59.185 45.833 0.00 0.00 0.00 2.73
259 260 5.424757 CCGAAAGATTATCCCACAAGTACA 58.575 41.667 0.00 0.00 0.00 2.90
260 261 6.055588 CCGAAAGATTATCCCACAAGTACAT 58.944 40.000 0.00 0.00 0.00 2.29
261 262 6.017934 CCGAAAGATTATCCCACAAGTACATG 60.018 42.308 0.00 0.00 0.00 3.21
262 263 6.511767 CGAAAGATTATCCCACAAGTACATGC 60.512 42.308 0.00 0.00 0.00 4.06
263 264 5.636903 AGATTATCCCACAAGTACATGCT 57.363 39.130 0.00 0.00 0.00 3.79
264 265 6.006275 AGATTATCCCACAAGTACATGCTT 57.994 37.500 0.00 0.00 0.00 3.91
265 266 6.058183 AGATTATCCCACAAGTACATGCTTC 58.942 40.000 0.00 0.00 0.00 3.86
266 267 2.489938 TCCCACAAGTACATGCTTCC 57.510 50.000 0.00 0.00 0.00 3.46
267 268 1.985159 TCCCACAAGTACATGCTTCCT 59.015 47.619 0.00 0.00 0.00 3.36
268 269 3.178046 TCCCACAAGTACATGCTTCCTA 58.822 45.455 0.00 0.00 0.00 2.94
269 270 3.780294 TCCCACAAGTACATGCTTCCTAT 59.220 43.478 0.00 0.00 0.00 2.57
270 271 3.879295 CCCACAAGTACATGCTTCCTATG 59.121 47.826 0.00 0.00 0.00 2.23
271 272 3.313526 CCACAAGTACATGCTTCCTATGC 59.686 47.826 0.00 0.00 0.00 3.14
272 273 3.940852 CACAAGTACATGCTTCCTATGCA 59.059 43.478 0.00 0.00 44.95 3.96
273 274 3.941483 ACAAGTACATGCTTCCTATGCAC 59.059 43.478 0.00 0.00 43.59 4.57
274 275 4.194640 CAAGTACATGCTTCCTATGCACT 58.805 43.478 0.00 0.00 43.59 4.40
275 276 4.494091 AGTACATGCTTCCTATGCACTT 57.506 40.909 0.00 0.00 43.59 3.16
276 277 4.848357 AGTACATGCTTCCTATGCACTTT 58.152 39.130 0.00 0.00 43.59 2.66
277 278 5.256474 AGTACATGCTTCCTATGCACTTTT 58.744 37.500 0.00 0.00 43.59 2.27
278 279 6.414732 AGTACATGCTTCCTATGCACTTTTA 58.585 36.000 0.00 0.00 43.59 1.52
284 285 4.651994 CTTCCTATGCACTTTTAACTGCG 58.348 43.478 0.00 0.00 36.08 5.18
301 302 5.927281 ACTGCGGGACTAAAACTATTAGA 57.073 39.130 0.00 0.00 0.00 2.10
302 303 6.481434 ACTGCGGGACTAAAACTATTAGAT 57.519 37.500 0.00 0.00 0.00 1.98
339 340 4.301505 GTGGCACGGACACATGAT 57.698 55.556 0.00 0.00 41.94 2.45
346 347 3.546020 GGCACGGACACATGATAATTTCG 60.546 47.826 0.00 0.00 0.00 3.46
350 351 4.032445 ACGGACACATGATAATTTCGAACG 59.968 41.667 0.00 0.00 0.00 3.95
384 390 3.467803 AGTTTAGTAATGCGAGGATGGC 58.532 45.455 0.00 0.00 41.71 4.40
420 426 2.001872 GCATGCCAATTTCCTTTTCGG 58.998 47.619 6.36 0.00 0.00 4.30
426 432 4.176271 GCCAATTTCCTTTTCGGATTCAG 58.824 43.478 0.00 0.00 42.70 3.02
469 477 8.770438 TCTTTTCAAATTGCAACTTTAACTGT 57.230 26.923 0.00 0.00 0.00 3.55
485 493 9.411189 ACTTTAACTGTAAAAATGTTAGGTCCA 57.589 29.630 0.00 0.00 0.00 4.02
504 512 7.386851 AGGTCCAGATTATTTCATACCATACG 58.613 38.462 0.00 0.00 0.00 3.06
512 520 7.542534 TTATTTCATACCATACGTGTGGAAC 57.457 36.000 34.65 0.00 42.02 3.62
544 552 4.022676 TGGGAAACTATTTTCACGCTTTCC 60.023 41.667 7.73 0.00 46.74 3.13
582 590 4.150451 ACCGTAAATTTAACCAACGAGACG 59.850 41.667 11.09 4.37 35.66 4.18
600 608 3.423154 GACTGCGGCGGGAACAAG 61.423 66.667 14.26 0.00 0.00 3.16
692 720 5.220970 GGTCAAACTTGGATCTCGAAAAACA 60.221 40.000 0.00 0.00 0.00 2.83
711 739 1.739929 CGGGCGCACTACATTGTGA 60.740 57.895 8.62 0.00 40.12 3.58
743 771 5.591877 GGAGTAGCATCATGACAAATCCTTT 59.408 40.000 0.00 0.00 0.00 3.11
745 773 6.182627 AGTAGCATCATGACAAATCCTTTCA 58.817 36.000 0.00 0.00 0.00 2.69
785 813 2.643551 CAACACTCACAAACCCTGACT 58.356 47.619 0.00 0.00 0.00 3.41
790 818 6.182507 ACACTCACAAACCCTGACTAAATA 57.817 37.500 0.00 0.00 0.00 1.40
799 827 3.635836 ACCCTGACTAAATACGTCCTAGC 59.364 47.826 0.00 0.00 0.00 3.42
890 920 0.460311 CGGTACACTCCAGACCATCC 59.540 60.000 0.00 0.00 32.39 3.51
974 1004 0.246360 TGAGGTGGTACGCACATCAG 59.754 55.000 20.50 0.00 43.02 2.90
983 1013 0.035317 ACGCACATCAGCCTTTCAGA 59.965 50.000 0.00 0.00 0.00 3.27
999 1029 4.747540 TTCAGACACATTTCACCAATCG 57.252 40.909 0.00 0.00 0.00 3.34
1091 1121 0.901114 TCACCCATTTCTCGTCCCGA 60.901 55.000 0.00 0.00 0.00 5.14
1128 1158 2.626266 TCATCCTTGACGTACTGTGTGT 59.374 45.455 0.00 0.00 0.00 3.72
1264 1303 2.507102 ATCTTCGGTGAGCGCGTG 60.507 61.111 8.43 0.00 0.00 5.34
1290 1329 5.438833 ACTAACTAGGACTAGCTAGTGTGG 58.561 45.833 30.70 20.04 41.13 4.17
1319 1358 4.514816 TCTGAATTTGATCGTGCAGAACAA 59.485 37.500 0.00 0.00 39.42 2.83
1330 1369 1.202687 TGCAGAACAAGGACAGACAGG 60.203 52.381 0.00 0.00 0.00 4.00
1489 1528 2.894307 GGTAACCATTTCAGTGCGAC 57.106 50.000 0.00 0.00 0.00 5.19
1490 1529 1.467342 GGTAACCATTTCAGTGCGACC 59.533 52.381 0.00 0.00 0.00 4.79
1515 1554 2.489329 CACGCAAATTCTGGTTCCATCT 59.511 45.455 0.00 0.00 0.00 2.90
1518 1557 2.417787 GCAAATTCTGGTTCCATCTGCC 60.418 50.000 0.00 0.00 0.00 4.85
1525 1564 1.300963 GTTCCATCTGCCTGCCTGA 59.699 57.895 0.00 0.00 0.00 3.86
1526 1565 0.106819 GTTCCATCTGCCTGCCTGAT 60.107 55.000 0.00 0.00 32.96 2.90
1527 1566 0.182061 TTCCATCTGCCTGCCTGATC 59.818 55.000 0.00 0.00 30.62 2.92
1528 1567 0.984432 TCCATCTGCCTGCCTGATCA 60.984 55.000 0.00 0.00 30.62 2.92
1534 1586 0.991146 TGCCTGCCTGATCACCTTTA 59.009 50.000 0.00 0.00 0.00 1.85
1540 1592 2.026262 TGCCTGATCACCTTTACTTCCC 60.026 50.000 0.00 0.00 0.00 3.97
1563 1615 0.459899 TGAATGTCATCGAGGGGTCG 59.540 55.000 0.00 0.00 0.00 4.79
1569 1621 1.030488 TCATCGAGGGGTCGTCTGAC 61.030 60.000 0.00 0.00 44.72 3.51
1578 1630 0.168568 GGTCGTCTGACTTCTCGTCC 59.831 60.000 6.21 0.00 44.83 4.79
1579 1631 1.158434 GTCGTCTGACTTCTCGTCCT 58.842 55.000 6.21 0.00 42.13 3.85
1684 1738 3.133721 AGTGAGAGCAGTTTTGTGTCTCT 59.866 43.478 0.00 0.00 37.40 3.10
1744 1798 2.158986 TGTGATTGTGCCTTGTTTTGGG 60.159 45.455 0.00 0.00 0.00 4.12
1761 1815 8.592529 TGTTTTGGGAAGATTATGATTCATCA 57.407 30.769 1.55 0.00 41.70 3.07
1915 1969 6.729391 TGTTAGTAAACAATTCGCATGCTA 57.271 33.333 17.13 0.72 42.60 3.49
1934 1990 0.394565 AGTGAGCTCTCAACCACCAC 59.605 55.000 16.19 1.56 41.85 4.16
1944 2001 2.004120 AACCACCACCCAGTCCACA 61.004 57.895 0.00 0.00 0.00 4.17
1948 2005 2.669569 CCACCCAGTCCACAAGCG 60.670 66.667 0.00 0.00 0.00 4.68
2033 2096 9.436866 AACCAAAGTTACCTTTATCCCTTTTTA 57.563 29.630 0.00 0.00 38.87 1.52
2192 2265 2.119801 CCTTCTAGGTGCATGCAAGT 57.880 50.000 24.58 15.12 0.00 3.16
2317 3003 5.887598 CACATTCCAGAATTAAGGGATCACA 59.112 40.000 0.00 0.00 0.00 3.58
2327 3013 7.616935 AGAATTAAGGGATCACACAAATCATGT 59.383 33.333 0.00 0.00 45.34 3.21
2330 3016 4.665451 AGGGATCACACAAATCATGTTCA 58.335 39.130 0.00 0.00 41.46 3.18
2369 3055 6.180472 AGAATTGTTTGGTCAATCTACCGAT 58.820 36.000 0.00 0.00 42.91 4.18
2423 3111 6.542370 GGATACATGTACAACTGCCTACAAAT 59.458 38.462 7.96 0.00 0.00 2.32
2510 3214 4.700700 ACGTATACATTAGGAAAGGGTGC 58.299 43.478 3.32 0.00 0.00 5.01
2530 3235 5.452777 GTGCATTTTTGGTCTCTCAACTAC 58.547 41.667 0.00 0.00 0.00 2.73
2544 3249 7.489757 GTCTCTCAACTACTAGCGAAATCAAAT 59.510 37.037 0.00 0.00 0.00 2.32
2562 3268 9.547279 AAATCAAATTTTGACCCCTAACTCTAT 57.453 29.630 13.80 0.00 43.48 1.98
2573 3279 9.364653 TGACCCCTAACTCTATTACTAGAAATC 57.635 37.037 0.00 0.00 33.59 2.17
2587 3293 6.884280 ACTAGAAATCCTTGGTCACAAAAG 57.116 37.500 0.00 0.00 35.89 2.27
2734 3442 5.838521 ACGGATGGAGGGCATTAAATTAAAT 59.161 36.000 0.00 0.00 0.00 1.40
2953 3673 2.628178 GGCCTTAAAATATGTGGAGCCC 59.372 50.000 0.00 0.00 31.59 5.19
2969 3690 1.202405 AGCCCAAAACACAAAGAAGCG 60.202 47.619 0.00 0.00 0.00 4.68
2975 3696 5.064579 CCCAAAACACAAAGAAGCGAATTTT 59.935 36.000 0.00 0.00 0.00 1.82
2976 3697 6.256757 CCCAAAACACAAAGAAGCGAATTTTA 59.743 34.615 0.00 0.00 0.00 1.52
2977 3698 7.042119 CCCAAAACACAAAGAAGCGAATTTTAT 60.042 33.333 0.00 0.00 0.00 1.40
2978 3699 8.334632 CCAAAACACAAAGAAGCGAATTTTATT 58.665 29.630 0.00 0.00 0.00 1.40
3146 3904 4.989279 ATGATTGATTTTCCAACCCTCG 57.011 40.909 0.00 0.00 0.00 4.63
3275 4034 9.801873 AATTATATTGAGGTGTTTTACATGCAC 57.198 29.630 0.00 0.00 0.00 4.57
3348 4109 4.467769 CCCTCCATTGTCATGCTAGATTT 58.532 43.478 0.00 0.00 0.00 2.17
3355 4116 3.011818 TGTCATGCTAGATTTGCCACTG 58.988 45.455 0.00 0.00 0.00 3.66
3356 4117 2.357009 GTCATGCTAGATTTGCCACTGG 59.643 50.000 0.00 0.00 0.00 4.00
3360 4121 3.609853 TGCTAGATTTGCCACTGGTTAG 58.390 45.455 0.00 0.00 0.00 2.34
3452 4213 2.368548 ACACTTGAGGGGCCAAAAATTC 59.631 45.455 4.39 0.00 0.00 2.17
3468 4229 8.081025 GCCAAAAATTCATGCTTTTAAAATGGA 58.919 29.630 17.26 4.27 28.10 3.41
3469 4230 9.962783 CCAAAAATTCATGCTTTTAAAATGGAA 57.037 25.926 0.09 4.10 28.10 3.53
3598 4364 2.669569 CAGCACCAACTCCCACGG 60.670 66.667 0.00 0.00 0.00 4.94
3646 4412 0.033796 AGATCACCGGGGAAGACGTA 60.034 55.000 12.35 0.00 0.00 3.57
3649 4415 3.446570 ACCGGGGAAGACGTAGCG 61.447 66.667 6.32 0.00 0.00 4.26
3716 4482 2.032924 AGGCGAAAGAAGAAAACAACGG 59.967 45.455 0.00 0.00 0.00 4.44
3730 4496 2.522185 ACAACGGTTGGCTCTCTAGTA 58.478 47.619 23.51 0.00 34.12 1.82
3731 4497 2.492484 ACAACGGTTGGCTCTCTAGTAG 59.508 50.000 23.51 0.00 34.12 2.57
3758 4524 5.821995 TCGTCAATGCCAAATGATTCATCTA 59.178 36.000 0.00 0.00 0.00 1.98
3765 4531 6.124340 TGCCAAATGATTCATCTACATCAGT 58.876 36.000 0.00 0.00 32.91 3.41
3771 4537 6.699575 TGATTCATCTACATCAGTCTCGAA 57.300 37.500 0.00 0.00 0.00 3.71
3794 4563 0.533491 AGCAACAGCCGTTACCGATA 59.467 50.000 0.00 0.00 35.63 2.92
3807 4576 2.691409 ACCGATACCATTGACACCAG 57.309 50.000 0.00 0.00 0.00 4.00
3944 4720 4.923281 GGATTGTTCTAAAAGCGTGCATTT 59.077 37.500 0.00 0.55 0.00 2.32
3948 4724 5.587289 TGTTCTAAAAGCGTGCATTTCTTT 58.413 33.333 0.00 0.00 0.00 2.52
4073 4946 4.813697 GTCTCCATTTCTAGTTGGATCTGC 59.186 45.833 10.75 0.00 41.09 4.26
4092 4965 7.255520 GGATCTGCTTGCATCTCAATATTTCTT 60.256 37.037 0.00 0.00 33.57 2.52
4093 4966 6.792326 TCTGCTTGCATCTCAATATTTCTTG 58.208 36.000 0.00 0.00 33.57 3.02
4114 4987 3.075882 TGAACCTTCTGATGAAACCCCAT 59.924 43.478 0.00 0.00 0.00 4.00
4126 4999 3.508012 TGAAACCCCATAATGAACCAACG 59.492 43.478 0.00 0.00 0.00 4.10
4152 5026 8.441312 AAAATAGGTCAGAAGTTAAAACACGA 57.559 30.769 0.00 0.00 0.00 4.35
4166 5040 1.919240 ACACGATGACCTAGGACACA 58.081 50.000 17.98 12.73 0.00 3.72
4167 5041 2.244695 ACACGATGACCTAGGACACAA 58.755 47.619 17.98 0.00 0.00 3.33
4221 5095 9.382244 CTTTCACCGAAAACTATACAAGAAAAG 57.618 33.333 0.00 0.00 30.84 2.27
4222 5096 8.665643 TTCACCGAAAACTATACAAGAAAAGA 57.334 30.769 0.00 0.00 0.00 2.52
4266 5142 1.679153 TCGGCATCATAGTTGTCGCTA 59.321 47.619 0.00 0.00 41.72 4.26
4267 5143 1.787155 CGGCATCATAGTTGTCGCTAC 59.213 52.381 0.00 0.00 35.22 3.58
4276 5152 0.389426 GTTGTCGCTACCGTCACCAT 60.389 55.000 0.00 0.00 32.55 3.55
4298 5182 0.179062 AGCTTAGGCCTCAATCTGCG 60.179 55.000 9.68 0.00 39.73 5.18
4299 5183 0.462759 GCTTAGGCCTCAATCTGCGT 60.463 55.000 9.68 0.00 0.00 5.24
4301 5185 1.667724 CTTAGGCCTCAATCTGCGTTG 59.332 52.381 9.68 0.00 0.00 4.10
4328 5212 2.744709 CGTTAACCCACCTGGCCG 60.745 66.667 0.00 0.00 37.83 6.13
4337 5221 1.684869 CCCACCTGGCCGAAATACAAT 60.685 52.381 0.00 0.00 0.00 2.71
4344 5228 4.058817 CTGGCCGAAATACAATAGTCTCC 58.941 47.826 0.00 0.00 0.00 3.71
4353 5237 2.379972 ACAATAGTCTCCTCTCCACGG 58.620 52.381 0.00 0.00 0.00 4.94
4416 5300 5.449107 TCTTGTTATGTATCTCTACCGCC 57.551 43.478 0.00 0.00 0.00 6.13
4439 5323 1.595382 CATAGCCGCTAGCCCACAC 60.595 63.158 9.66 0.00 45.47 3.82
4457 5341 6.122277 CCCACACAAGACATATAAACCTCAT 58.878 40.000 0.00 0.00 0.00 2.90
4478 5362 1.825474 AGAGATCCACACTTACCCGTG 59.175 52.381 0.00 0.00 40.67 4.94
4592 5482 6.773638 TCACTTTCTCTCTATGGAAGCTTTT 58.226 36.000 0.00 0.00 0.00 2.27
4593 5483 7.907389 TCACTTTCTCTCTATGGAAGCTTTTA 58.093 34.615 0.00 0.00 0.00 1.52
4662 5562 4.766373 TGGCAATCATCAAGAACAAAGCTA 59.234 37.500 0.00 0.00 0.00 3.32
4799 5710 6.391227 ACTATGTTCCTTTCCTGTGTTTTG 57.609 37.500 0.00 0.00 0.00 2.44
4927 5841 3.609853 TGCACTGCGAGGAAATAAAGAT 58.390 40.909 0.00 0.00 0.00 2.40
5006 5921 3.822940 CCTAGAGGGAACGACTATGTCT 58.177 50.000 0.00 0.00 37.23 3.41
5007 5922 3.816523 CCTAGAGGGAACGACTATGTCTC 59.183 52.174 0.00 0.00 37.23 3.36
5008 5923 2.290464 AGAGGGAACGACTATGTCTCG 58.710 52.381 0.00 0.00 37.17 4.04
5009 5924 0.739561 AGGGAACGACTATGTCTCGC 59.260 55.000 0.00 0.00 34.34 5.03
5010 5925 0.739561 GGGAACGACTATGTCTCGCT 59.260 55.000 0.00 0.00 34.34 4.93
5011 5926 1.534175 GGGAACGACTATGTCTCGCTG 60.534 57.143 0.00 0.00 34.34 5.18
5012 5927 1.132643 GGAACGACTATGTCTCGCTGT 59.867 52.381 0.00 0.00 34.34 4.40
5013 5928 2.353889 GGAACGACTATGTCTCGCTGTA 59.646 50.000 0.00 0.00 34.34 2.74
5014 5929 3.181503 GGAACGACTATGTCTCGCTGTAA 60.182 47.826 0.00 0.00 34.34 2.41
5015 5930 3.677190 ACGACTATGTCTCGCTGTAAG 57.323 47.619 0.00 0.00 34.34 2.34
5030 5945 4.963237 CTGTAAGCGAGACATAATCAGC 57.037 45.455 0.00 0.00 34.55 4.26
5031 5946 4.615949 CTGTAAGCGAGACATAATCAGCT 58.384 43.478 0.00 0.00 42.93 4.24
5032 5947 4.611943 TGTAAGCGAGACATAATCAGCTC 58.388 43.478 0.00 0.00 41.07 4.09
5033 5948 3.808466 AAGCGAGACATAATCAGCTCA 57.192 42.857 0.00 0.00 41.07 4.26
5034 5949 3.808466 AGCGAGACATAATCAGCTCAA 57.192 42.857 0.00 0.00 38.67 3.02
5035 5950 3.715495 AGCGAGACATAATCAGCTCAAG 58.285 45.455 0.00 0.00 38.67 3.02
5036 5951 2.220593 GCGAGACATAATCAGCTCAAGC 59.779 50.000 0.00 0.00 42.49 4.01
5037 5952 3.451526 CGAGACATAATCAGCTCAAGCA 58.548 45.455 4.59 0.00 45.16 3.91
5038 5953 3.490155 CGAGACATAATCAGCTCAAGCAG 59.510 47.826 4.59 0.00 45.16 4.24
5039 5954 4.691175 GAGACATAATCAGCTCAAGCAGA 58.309 43.478 4.59 1.86 45.16 4.26
5040 5955 5.095145 AGACATAATCAGCTCAAGCAGAA 57.905 39.130 4.59 0.00 45.16 3.02
5041 5956 5.117584 AGACATAATCAGCTCAAGCAGAAG 58.882 41.667 4.59 0.00 45.16 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.980233 ACAAGCGCCCTCACTTGC 60.980 61.111 2.29 0.00 45.74 4.01
2 3 2.281761 CCACAAGCGCCCTCACTT 60.282 61.111 2.29 0.00 0.00 3.16
3 4 3.537206 GACCACAAGCGCCCTCACT 62.537 63.158 2.29 0.00 0.00 3.41
4 5 3.050275 GACCACAAGCGCCCTCAC 61.050 66.667 2.29 0.00 0.00 3.51
6 7 2.032681 AAGACCACAAGCGCCCTC 59.967 61.111 2.29 0.00 0.00 4.30
7 8 1.192146 TAGAAGACCACAAGCGCCCT 61.192 55.000 2.29 0.00 0.00 5.19
8 9 0.107654 ATAGAAGACCACAAGCGCCC 60.108 55.000 2.29 0.00 0.00 6.13
9 10 1.739067 AATAGAAGACCACAAGCGCC 58.261 50.000 2.29 0.00 0.00 6.53
10 11 3.003480 AGAAATAGAAGACCACAAGCGC 58.997 45.455 0.00 0.00 0.00 5.92
11 12 4.499183 AGAGAAATAGAAGACCACAAGCG 58.501 43.478 0.00 0.00 0.00 4.68
12 13 4.873259 GGAGAGAAATAGAAGACCACAAGC 59.127 45.833 0.00 0.00 0.00 4.01
13 14 6.071108 TGAGGAGAGAAATAGAAGACCACAAG 60.071 42.308 0.00 0.00 0.00 3.16
14 15 5.780282 TGAGGAGAGAAATAGAAGACCACAA 59.220 40.000 0.00 0.00 0.00 3.33
15 16 5.333581 TGAGGAGAGAAATAGAAGACCACA 58.666 41.667 0.00 0.00 0.00 4.17
16 17 5.923733 TGAGGAGAGAAATAGAAGACCAC 57.076 43.478 0.00 0.00 0.00 4.16
17 18 5.780282 TGTTGAGGAGAGAAATAGAAGACCA 59.220 40.000 0.00 0.00 0.00 4.02
18 19 6.103330 GTGTTGAGGAGAGAAATAGAAGACC 58.897 44.000 0.00 0.00 0.00 3.85
19 20 6.103330 GGTGTTGAGGAGAGAAATAGAAGAC 58.897 44.000 0.00 0.00 0.00 3.01
20 21 5.187967 GGGTGTTGAGGAGAGAAATAGAAGA 59.812 44.000 0.00 0.00 0.00 2.87
21 22 5.423886 GGGTGTTGAGGAGAGAAATAGAAG 58.576 45.833 0.00 0.00 0.00 2.85
22 23 4.225267 GGGGTGTTGAGGAGAGAAATAGAA 59.775 45.833 0.00 0.00 0.00 2.10
23 24 3.775316 GGGGTGTTGAGGAGAGAAATAGA 59.225 47.826 0.00 0.00 0.00 1.98
24 25 3.519510 TGGGGTGTTGAGGAGAGAAATAG 59.480 47.826 0.00 0.00 0.00 1.73
25 26 3.263425 GTGGGGTGTTGAGGAGAGAAATA 59.737 47.826 0.00 0.00 0.00 1.40
26 27 2.040412 GTGGGGTGTTGAGGAGAGAAAT 59.960 50.000 0.00 0.00 0.00 2.17
27 28 1.420138 GTGGGGTGTTGAGGAGAGAAA 59.580 52.381 0.00 0.00 0.00 2.52
28 29 1.056660 GTGGGGTGTTGAGGAGAGAA 58.943 55.000 0.00 0.00 0.00 2.87
29 30 0.105194 TGTGGGGTGTTGAGGAGAGA 60.105 55.000 0.00 0.00 0.00 3.10
30 31 0.987294 ATGTGGGGTGTTGAGGAGAG 59.013 55.000 0.00 0.00 0.00 3.20
31 32 2.335681 TATGTGGGGTGTTGAGGAGA 57.664 50.000 0.00 0.00 0.00 3.71
32 33 3.244911 ACTTTATGTGGGGTGTTGAGGAG 60.245 47.826 0.00 0.00 0.00 3.69
33 34 2.714250 ACTTTATGTGGGGTGTTGAGGA 59.286 45.455 0.00 0.00 0.00 3.71
34 35 2.819608 CACTTTATGTGGGGTGTTGAGG 59.180 50.000 0.00 0.00 42.68 3.86
45 46 3.125316 GGTTCTCTTCGCCACTTTATGTG 59.875 47.826 0.00 0.00 45.80 3.21
46 47 3.335579 GGTTCTCTTCGCCACTTTATGT 58.664 45.455 0.00 0.00 0.00 2.29
47 48 2.678336 GGGTTCTCTTCGCCACTTTATG 59.322 50.000 0.00 0.00 0.00 1.90
48 49 2.304761 TGGGTTCTCTTCGCCACTTTAT 59.695 45.455 0.00 0.00 0.00 1.40
49 50 1.695242 TGGGTTCTCTTCGCCACTTTA 59.305 47.619 0.00 0.00 0.00 1.85
50 51 0.472471 TGGGTTCTCTTCGCCACTTT 59.528 50.000 0.00 0.00 0.00 2.66
51 52 0.250338 GTGGGTTCTCTTCGCCACTT 60.250 55.000 0.00 0.00 0.00 3.16
52 53 1.122019 AGTGGGTTCTCTTCGCCACT 61.122 55.000 0.00 0.00 34.30 4.00
53 54 0.606604 TAGTGGGTTCTCTTCGCCAC 59.393 55.000 0.00 0.00 0.00 5.01
54 55 1.568504 ATAGTGGGTTCTCTTCGCCA 58.431 50.000 0.00 0.00 0.00 5.69
55 56 5.662674 ATATATAGTGGGTTCTCTTCGCC 57.337 43.478 0.00 0.00 0.00 5.54
56 57 7.154435 TGTATATATAGTGGGTTCTCTTCGC 57.846 40.000 0.00 0.00 0.00 4.70
57 58 7.393796 ACCTGTATATATAGTGGGTTCTCTTCG 59.606 40.741 12.82 0.00 0.00 3.79
58 59 8.653036 ACCTGTATATATAGTGGGTTCTCTTC 57.347 38.462 12.82 0.00 0.00 2.87
59 60 8.457757 AGACCTGTATATATAGTGGGTTCTCTT 58.542 37.037 12.82 0.00 0.00 2.85
60 61 8.002431 AGACCTGTATATATAGTGGGTTCTCT 57.998 38.462 12.82 6.18 0.00 3.10
61 62 7.889073 TGAGACCTGTATATATAGTGGGTTCTC 59.111 40.741 15.75 15.75 0.00 2.87
62 63 7.670559 GTGAGACCTGTATATATAGTGGGTTCT 59.329 40.741 12.82 8.69 0.00 3.01
63 64 7.450634 TGTGAGACCTGTATATATAGTGGGTTC 59.549 40.741 12.82 10.41 0.00 3.62
64 65 7.232941 GTGTGAGACCTGTATATATAGTGGGTT 59.767 40.741 12.82 3.88 0.00 4.11
65 66 6.720288 GTGTGAGACCTGTATATATAGTGGGT 59.280 42.308 12.82 11.24 0.00 4.51
66 67 6.153000 GGTGTGAGACCTGTATATATAGTGGG 59.847 46.154 12.82 8.90 42.25 4.61
67 68 7.159322 GGTGTGAGACCTGTATATATAGTGG 57.841 44.000 5.85 8.60 42.25 4.00
81 82 1.343069 AGTTGAGGAGGTGTGAGACC 58.657 55.000 0.00 0.00 46.58 3.85
82 83 3.394719 GAAAGTTGAGGAGGTGTGAGAC 58.605 50.000 0.00 0.00 0.00 3.36
83 84 2.035961 CGAAAGTTGAGGAGGTGTGAGA 59.964 50.000 0.00 0.00 0.00 3.27
84 85 2.408050 CGAAAGTTGAGGAGGTGTGAG 58.592 52.381 0.00 0.00 0.00 3.51
85 86 1.070134 CCGAAAGTTGAGGAGGTGTGA 59.930 52.381 0.00 0.00 0.00 3.58
86 87 1.512926 CCGAAAGTTGAGGAGGTGTG 58.487 55.000 0.00 0.00 0.00 3.82
87 88 0.396811 CCCGAAAGTTGAGGAGGTGT 59.603 55.000 0.00 0.00 0.00 4.16
88 89 0.685097 TCCCGAAAGTTGAGGAGGTG 59.315 55.000 0.00 0.00 0.00 4.00
89 90 0.685660 GTCCCGAAAGTTGAGGAGGT 59.314 55.000 0.00 0.00 0.00 3.85
90 91 0.389948 CGTCCCGAAAGTTGAGGAGG 60.390 60.000 0.00 0.00 0.00 4.30
91 92 0.601558 TCGTCCCGAAAGTTGAGGAG 59.398 55.000 0.00 0.00 31.06 3.69
92 93 0.601558 CTCGTCCCGAAAGTTGAGGA 59.398 55.000 0.00 0.00 34.74 3.71
93 94 0.601558 TCTCGTCCCGAAAGTTGAGG 59.398 55.000 0.00 0.00 34.74 3.86
94 95 2.656560 ATCTCGTCCCGAAAGTTGAG 57.343 50.000 0.00 0.00 34.74 3.02
95 96 4.524316 TTAATCTCGTCCCGAAAGTTGA 57.476 40.909 0.00 0.00 34.74 3.18
96 97 4.449743 TGTTTAATCTCGTCCCGAAAGTTG 59.550 41.667 0.00 0.00 34.74 3.16
97 98 4.634199 TGTTTAATCTCGTCCCGAAAGTT 58.366 39.130 0.00 0.00 34.74 2.66
98 99 4.261578 TGTTTAATCTCGTCCCGAAAGT 57.738 40.909 0.00 0.00 34.74 2.66
99 100 5.796350 AATGTTTAATCTCGTCCCGAAAG 57.204 39.130 0.00 0.00 34.74 2.62
100 101 6.632909 TCTAATGTTTAATCTCGTCCCGAAA 58.367 36.000 0.00 0.00 34.74 3.46
101 102 6.127535 ACTCTAATGTTTAATCTCGTCCCGAA 60.128 38.462 0.00 0.00 34.74 4.30
102 103 5.359009 ACTCTAATGTTTAATCTCGTCCCGA 59.641 40.000 0.00 0.00 0.00 5.14
103 104 5.589192 ACTCTAATGTTTAATCTCGTCCCG 58.411 41.667 0.00 0.00 0.00 5.14
104 105 6.476053 GTGACTCTAATGTTTAATCTCGTCCC 59.524 42.308 0.00 0.00 0.00 4.46
105 106 6.476053 GGTGACTCTAATGTTTAATCTCGTCC 59.524 42.308 0.00 0.00 0.00 4.79
106 107 7.009357 GTGGTGACTCTAATGTTTAATCTCGTC 59.991 40.741 0.00 0.00 0.00 4.20
107 108 6.812160 GTGGTGACTCTAATGTTTAATCTCGT 59.188 38.462 0.00 0.00 0.00 4.18
108 109 7.036220 AGTGGTGACTCTAATGTTTAATCTCG 58.964 38.462 0.00 0.00 31.07 4.04
109 110 8.660373 CAAGTGGTGACTCTAATGTTTAATCTC 58.340 37.037 0.00 0.00 32.92 2.75
110 111 8.157476 ACAAGTGGTGACTCTAATGTTTAATCT 58.843 33.333 0.00 0.00 32.92 2.40
111 112 8.324163 ACAAGTGGTGACTCTAATGTTTAATC 57.676 34.615 0.00 0.00 32.92 1.75
112 113 8.691661 AACAAGTGGTGACTCTAATGTTTAAT 57.308 30.769 0.00 0.00 33.43 1.40
113 114 9.787435 ATAACAAGTGGTGACTCTAATGTTTAA 57.213 29.630 0.00 0.00 36.68 1.52
114 115 9.787435 AATAACAAGTGGTGACTCTAATGTTTA 57.213 29.630 0.00 0.00 36.68 2.01
115 116 8.691661 AATAACAAGTGGTGACTCTAATGTTT 57.308 30.769 0.00 0.00 36.68 2.83
116 117 8.691661 AAATAACAAGTGGTGACTCTAATGTT 57.308 30.769 0.00 0.00 38.08 2.71
117 118 8.691661 AAAATAACAAGTGGTGACTCTAATGT 57.308 30.769 0.00 0.00 32.92 2.71
119 120 9.787435 TGTAAAATAACAAGTGGTGACTCTAAT 57.213 29.630 0.00 0.00 32.92 1.73
120 121 9.048446 GTGTAAAATAACAAGTGGTGACTCTAA 57.952 33.333 0.00 0.00 32.92 2.10
121 122 8.205512 TGTGTAAAATAACAAGTGGTGACTCTA 58.794 33.333 0.00 0.00 32.92 2.43
122 123 7.051623 TGTGTAAAATAACAAGTGGTGACTCT 58.948 34.615 0.00 0.00 35.21 3.24
123 124 7.254227 TGTGTAAAATAACAAGTGGTGACTC 57.746 36.000 0.00 0.00 0.00 3.36
124 125 7.255451 CCATGTGTAAAATAACAAGTGGTGACT 60.255 37.037 0.00 0.00 0.00 3.41
125 126 6.861055 CCATGTGTAAAATAACAAGTGGTGAC 59.139 38.462 0.00 0.00 0.00 3.67
126 127 6.773200 TCCATGTGTAAAATAACAAGTGGTGA 59.227 34.615 0.00 0.00 0.00 4.02
127 128 6.861055 GTCCATGTGTAAAATAACAAGTGGTG 59.139 38.462 0.00 0.00 0.00 4.17
128 129 6.015772 GGTCCATGTGTAAAATAACAAGTGGT 60.016 38.462 0.00 0.00 0.00 4.16
129 130 6.015856 TGGTCCATGTGTAAAATAACAAGTGG 60.016 38.462 0.00 0.00 0.00 4.00
130 131 6.861055 GTGGTCCATGTGTAAAATAACAAGTG 59.139 38.462 0.00 0.00 0.00 3.16
131 132 6.775629 AGTGGTCCATGTGTAAAATAACAAGT 59.224 34.615 0.00 0.00 0.00 3.16
132 133 7.214467 AGTGGTCCATGTGTAAAATAACAAG 57.786 36.000 0.00 0.00 0.00 3.16
133 134 7.589958 AAGTGGTCCATGTGTAAAATAACAA 57.410 32.000 0.00 0.00 0.00 2.83
134 135 7.285629 TCAAAGTGGTCCATGTGTAAAATAACA 59.714 33.333 0.00 0.00 0.00 2.41
135 136 7.653647 TCAAAGTGGTCCATGTGTAAAATAAC 58.346 34.615 0.00 0.00 0.00 1.89
136 137 7.721842 TCTCAAAGTGGTCCATGTGTAAAATAA 59.278 33.333 0.00 0.00 0.00 1.40
137 138 7.227873 TCTCAAAGTGGTCCATGTGTAAAATA 58.772 34.615 0.00 0.00 0.00 1.40
138 139 6.068010 TCTCAAAGTGGTCCATGTGTAAAAT 58.932 36.000 0.00 0.00 0.00 1.82
139 140 5.441500 TCTCAAAGTGGTCCATGTGTAAAA 58.558 37.500 0.00 0.00 0.00 1.52
140 141 5.042463 TCTCAAAGTGGTCCATGTGTAAA 57.958 39.130 0.00 0.00 0.00 2.01
141 142 4.698201 TCTCAAAGTGGTCCATGTGTAA 57.302 40.909 0.00 0.00 0.00 2.41
142 143 4.908601 ATCTCAAAGTGGTCCATGTGTA 57.091 40.909 0.00 0.00 0.00 2.90
143 144 3.795688 ATCTCAAAGTGGTCCATGTGT 57.204 42.857 0.00 0.00 0.00 3.72
144 145 5.458041 AAAATCTCAAAGTGGTCCATGTG 57.542 39.130 0.00 0.00 0.00 3.21
145 146 7.595819 TTTAAAATCTCAAAGTGGTCCATGT 57.404 32.000 0.00 0.00 0.00 3.21
146 147 8.885494 TTTTTAAAATCTCAAAGTGGTCCATG 57.115 30.769 0.55 0.00 0.00 3.66
148 149 9.323985 CAATTTTTAAAATCTCAAAGTGGTCCA 57.676 29.630 3.23 0.00 0.00 4.02
149 150 9.325198 ACAATTTTTAAAATCTCAAAGTGGTCC 57.675 29.630 3.23 0.00 30.41 4.46
158 159 9.225436 GGCCCATTAACAATTTTTAAAATCTCA 57.775 29.630 3.23 0.00 0.00 3.27
159 160 9.225436 TGGCCCATTAACAATTTTTAAAATCTC 57.775 29.630 0.00 0.00 0.00 2.75
160 161 9.752228 ATGGCCCATTAACAATTTTTAAAATCT 57.248 25.926 0.00 0.00 0.00 2.40
161 162 9.786105 CATGGCCCATTAACAATTTTTAAAATC 57.214 29.630 0.00 0.00 0.00 2.17
162 163 8.249638 GCATGGCCCATTAACAATTTTTAAAAT 58.750 29.630 0.00 0.00 0.00 1.82
163 164 7.309438 GGCATGGCCCATTAACAATTTTTAAAA 60.309 33.333 8.35 0.00 44.06 1.52
164 165 6.151817 GGCATGGCCCATTAACAATTTTTAAA 59.848 34.615 8.35 0.00 44.06 1.52
165 166 5.649831 GGCATGGCCCATTAACAATTTTTAA 59.350 36.000 8.35 0.00 44.06 1.52
166 167 5.189180 GGCATGGCCCATTAACAATTTTTA 58.811 37.500 8.35 0.00 44.06 1.52
167 168 4.015764 GGCATGGCCCATTAACAATTTTT 58.984 39.130 8.35 0.00 44.06 1.94
168 169 3.619419 GGCATGGCCCATTAACAATTTT 58.381 40.909 8.35 0.00 44.06 1.82
169 170 3.280197 GGCATGGCCCATTAACAATTT 57.720 42.857 8.35 0.00 44.06 1.82
182 183 0.831966 TGGAATTGAATGGGCATGGC 59.168 50.000 11.56 11.56 0.00 4.40
183 184 3.849563 ATTGGAATTGAATGGGCATGG 57.150 42.857 0.00 0.00 0.00 3.66
184 185 9.590451 GTAATATATTGGAATTGAATGGGCATG 57.410 33.333 8.28 0.00 0.00 4.06
185 186 9.551339 AGTAATATATTGGAATTGAATGGGCAT 57.449 29.630 8.28 0.00 0.00 4.40
186 187 8.954834 AGTAATATATTGGAATTGAATGGGCA 57.045 30.769 8.28 0.00 0.00 5.36
210 211 9.722056 GGTCATTATTTTACAAGTCAATGCTAG 57.278 33.333 0.00 0.00 0.00 3.42
211 212 8.682710 GGGTCATTATTTTACAAGTCAATGCTA 58.317 33.333 0.00 0.00 0.00 3.49
212 213 7.547227 GGGTCATTATTTTACAAGTCAATGCT 58.453 34.615 0.00 0.00 0.00 3.79
213 214 6.472163 CGGGTCATTATTTTACAAGTCAATGC 59.528 38.462 0.00 0.00 0.00 3.56
214 215 7.757526 TCGGGTCATTATTTTACAAGTCAATG 58.242 34.615 0.00 0.00 0.00 2.82
215 216 7.931578 TCGGGTCATTATTTTACAAGTCAAT 57.068 32.000 0.00 0.00 0.00 2.57
216 217 7.747155 TTCGGGTCATTATTTTACAAGTCAA 57.253 32.000 0.00 0.00 0.00 3.18
217 218 7.662258 TCTTTCGGGTCATTATTTTACAAGTCA 59.338 33.333 0.00 0.00 0.00 3.41
218 219 8.036273 TCTTTCGGGTCATTATTTTACAAGTC 57.964 34.615 0.00 0.00 0.00 3.01
219 220 7.989416 TCTTTCGGGTCATTATTTTACAAGT 57.011 32.000 0.00 0.00 0.00 3.16
224 225 9.292195 GGGATAATCTTTCGGGTCATTATTTTA 57.708 33.333 0.00 0.00 0.00 1.52
225 226 7.782644 TGGGATAATCTTTCGGGTCATTATTTT 59.217 33.333 0.00 0.00 0.00 1.82
226 227 7.230712 GTGGGATAATCTTTCGGGTCATTATTT 59.769 37.037 0.00 0.00 0.00 1.40
227 228 6.715264 GTGGGATAATCTTTCGGGTCATTATT 59.285 38.462 0.00 0.00 0.00 1.40
228 229 6.183361 TGTGGGATAATCTTTCGGGTCATTAT 60.183 38.462 0.00 0.00 0.00 1.28
229 230 5.131308 TGTGGGATAATCTTTCGGGTCATTA 59.869 40.000 0.00 0.00 0.00 1.90
230 231 4.080015 TGTGGGATAATCTTTCGGGTCATT 60.080 41.667 0.00 0.00 0.00 2.57
231 232 3.458118 TGTGGGATAATCTTTCGGGTCAT 59.542 43.478 0.00 0.00 0.00 3.06
232 233 2.841266 TGTGGGATAATCTTTCGGGTCA 59.159 45.455 0.00 0.00 0.00 4.02
233 234 3.553828 TGTGGGATAATCTTTCGGGTC 57.446 47.619 0.00 0.00 0.00 4.46
234 235 3.265995 ACTTGTGGGATAATCTTTCGGGT 59.734 43.478 0.00 0.00 0.00 5.28
235 236 3.886123 ACTTGTGGGATAATCTTTCGGG 58.114 45.455 0.00 0.00 0.00 5.14
236 237 5.424757 TGTACTTGTGGGATAATCTTTCGG 58.575 41.667 0.00 0.00 0.00 4.30
237 238 6.511767 GCATGTACTTGTGGGATAATCTTTCG 60.512 42.308 10.17 0.00 0.00 3.46
238 239 6.543831 AGCATGTACTTGTGGGATAATCTTTC 59.456 38.462 10.17 0.00 0.00 2.62
239 240 6.426587 AGCATGTACTTGTGGGATAATCTTT 58.573 36.000 10.17 0.00 0.00 2.52
240 241 6.006275 AGCATGTACTTGTGGGATAATCTT 57.994 37.500 10.17 0.00 0.00 2.40
241 242 5.636903 AGCATGTACTTGTGGGATAATCT 57.363 39.130 10.17 0.00 0.00 2.40
242 243 5.239525 GGAAGCATGTACTTGTGGGATAATC 59.760 44.000 10.17 0.00 0.00 1.75
243 244 5.103940 AGGAAGCATGTACTTGTGGGATAAT 60.104 40.000 10.17 0.00 0.00 1.28
244 245 4.227300 AGGAAGCATGTACTTGTGGGATAA 59.773 41.667 10.17 0.00 0.00 1.75
245 246 3.780294 AGGAAGCATGTACTTGTGGGATA 59.220 43.478 10.17 0.00 0.00 2.59
246 247 2.578021 AGGAAGCATGTACTTGTGGGAT 59.422 45.455 10.17 0.00 0.00 3.85
247 248 1.985159 AGGAAGCATGTACTTGTGGGA 59.015 47.619 10.17 0.00 0.00 4.37
248 249 2.496899 AGGAAGCATGTACTTGTGGG 57.503 50.000 10.17 0.00 0.00 4.61
249 250 3.313526 GCATAGGAAGCATGTACTTGTGG 59.686 47.826 10.17 0.00 0.00 4.17
250 251 3.940852 TGCATAGGAAGCATGTACTTGTG 59.059 43.478 10.17 0.61 37.02 3.33
251 252 3.941483 GTGCATAGGAAGCATGTACTTGT 59.059 43.478 10.17 0.00 44.79 3.16
252 253 4.194640 AGTGCATAGGAAGCATGTACTTG 58.805 43.478 4.42 4.42 43.93 3.16
253 254 4.494091 AGTGCATAGGAAGCATGTACTT 57.506 40.909 0.00 0.00 43.93 2.24
254 255 4.494091 AAGTGCATAGGAAGCATGTACT 57.506 40.909 0.00 0.95 46.95 2.73
255 256 5.567138 AAAAGTGCATAGGAAGCATGTAC 57.433 39.130 0.00 0.00 44.79 2.90
256 257 6.884295 AGTTAAAAGTGCATAGGAAGCATGTA 59.116 34.615 0.00 0.00 44.79 2.29
257 258 5.711976 AGTTAAAAGTGCATAGGAAGCATGT 59.288 36.000 0.00 0.00 44.79 3.21
258 259 6.032094 CAGTTAAAAGTGCATAGGAAGCATG 58.968 40.000 0.00 0.00 44.79 4.06
259 260 6.199937 CAGTTAAAAGTGCATAGGAAGCAT 57.800 37.500 0.00 0.00 44.79 3.79
260 261 5.627499 CAGTTAAAAGTGCATAGGAAGCA 57.373 39.130 0.00 0.00 40.19 3.91
271 272 5.008316 AGTTTTAGTCCCGCAGTTAAAAGTG 59.992 40.000 0.00 0.00 31.16 3.16
272 273 5.128205 AGTTTTAGTCCCGCAGTTAAAAGT 58.872 37.500 0.00 0.00 0.00 2.66
273 274 5.684550 AGTTTTAGTCCCGCAGTTAAAAG 57.315 39.130 0.00 0.00 0.00 2.27
274 275 7.748691 AATAGTTTTAGTCCCGCAGTTAAAA 57.251 32.000 0.00 0.00 0.00 1.52
275 276 8.313292 TCTAATAGTTTTAGTCCCGCAGTTAAA 58.687 33.333 1.01 0.00 0.00 1.52
276 277 7.839907 TCTAATAGTTTTAGTCCCGCAGTTAA 58.160 34.615 1.01 0.00 0.00 2.01
277 278 7.408756 TCTAATAGTTTTAGTCCCGCAGTTA 57.591 36.000 1.01 0.00 0.00 2.24
278 279 6.290294 TCTAATAGTTTTAGTCCCGCAGTT 57.710 37.500 1.01 0.00 0.00 3.16
301 302 5.985530 CCACACGTATGTCACTTATCATGAT 59.014 40.000 13.81 13.81 36.72 2.45
302 303 5.348164 CCACACGTATGTCACTTATCATGA 58.652 41.667 0.00 0.00 36.72 3.07
330 331 7.775729 AAAACGTTCGAAATTATCATGTGTC 57.224 32.000 0.00 0.00 0.00 3.67
373 374 1.003118 ACTAAAGTTGCCATCCTCGCA 59.997 47.619 0.00 0.00 0.00 5.10
390 396 4.321899 GGAAATTGGCATGCTTCACAACTA 60.322 41.667 18.92 0.00 0.00 2.24
444 452 8.770438 ACAGTTAAAGTTGCAATTTGAAAAGA 57.230 26.923 8.06 0.00 0.00 2.52
475 483 8.096621 TGGTATGAAATAATCTGGACCTAACA 57.903 34.615 0.00 0.00 0.00 2.41
485 493 7.732025 TCCACACGTATGGTATGAAATAATCT 58.268 34.615 13.59 0.00 40.95 2.40
494 502 6.277605 TGATAAGTTCCACACGTATGGTATG 58.722 40.000 13.59 0.00 40.95 2.39
495 503 6.474140 TGATAAGTTCCACACGTATGGTAT 57.526 37.500 13.59 2.93 40.95 2.73
497 505 4.811969 TGATAAGTTCCACACGTATGGT 57.188 40.909 13.59 0.00 40.95 3.55
502 510 3.756434 CCCAAATGATAAGTTCCACACGT 59.244 43.478 0.00 0.00 0.00 4.49
504 512 5.975693 TTCCCAAATGATAAGTTCCACAC 57.024 39.130 0.00 0.00 0.00 3.82
512 520 9.289303 CGTGAAAATAGTTTCCCAAATGATAAG 57.711 33.333 12.73 0.00 42.20 1.73
544 552 5.585500 TTTACGGTCAAACTTGAATCTCG 57.415 39.130 0.00 0.15 39.21 4.04
592 600 4.773013 TCCGTGGTATAATTCTTGTTCCC 58.227 43.478 0.00 0.00 0.00 3.97
639 667 2.050351 CAACGAGACCGACTGCGT 60.050 61.111 0.00 0.00 39.50 5.24
692 720 2.032634 CACAATGTAGTGCGCCCGT 61.033 57.895 4.18 0.00 32.04 5.28
711 739 3.718434 TCATGATGCTACTCCCTCCATTT 59.282 43.478 0.00 0.00 0.00 2.32
743 771 2.392662 GACAGGGATGAGATGGACTGA 58.607 52.381 0.00 0.00 0.00 3.41
745 773 1.407936 CGACAGGGATGAGATGGACT 58.592 55.000 0.00 0.00 0.00 3.85
785 813 5.593679 AAGAAGCTGCTAGGACGTATTTA 57.406 39.130 0.90 0.00 0.00 1.40
790 818 3.447586 TCATTAAGAAGCTGCTAGGACGT 59.552 43.478 0.90 0.00 0.00 4.34
799 827 7.042590 TGTTTGCATTTTGTCATTAAGAAGCTG 60.043 33.333 0.00 0.00 0.00 4.24
860 890 0.968901 AGTGTACCGGCGATTCCTGA 60.969 55.000 9.30 0.00 0.00 3.86
890 920 3.949031 GCCGTAGCTCCTACTGAAG 57.051 57.895 0.00 0.00 35.06 3.02
974 1004 2.622942 TGGTGAAATGTGTCTGAAAGGC 59.377 45.455 0.00 0.00 40.66 4.35
999 1029 2.286025 GTCGGGCGTGTAAATAATGACC 59.714 50.000 0.00 0.00 0.00 4.02
1001 1031 2.195096 CGTCGGGCGTGTAAATAATGA 58.805 47.619 0.00 0.00 35.54 2.57
1128 1158 1.848652 CCCTTCCTAGGACGAGAACA 58.151 55.000 16.67 0.00 45.05 3.18
1183 1222 2.440539 AGTTGGACGCCATATCGATC 57.559 50.000 0.00 0.00 31.53 3.69
1290 1329 3.673323 GCACGATCAAATTCAGAAACCCC 60.673 47.826 0.00 0.00 0.00 4.95
1319 1358 0.613292 AGATCACGCCTGTCTGTCCT 60.613 55.000 0.00 0.00 0.00 3.85
1330 1369 3.605486 GCAAGAACAAATTCAGATCACGC 59.395 43.478 0.00 0.00 37.29 5.34
1489 1528 1.153353 ACCAGAATTTGCGTGTACGG 58.847 50.000 6.55 0.00 40.23 4.02
1490 1529 2.412325 GGAACCAGAATTTGCGTGTACG 60.412 50.000 0.00 0.00 43.27 3.67
1515 1554 0.991146 TAAAGGTGATCAGGCAGGCA 59.009 50.000 0.00 0.00 0.00 4.75
1518 1557 3.274288 GGAAGTAAAGGTGATCAGGCAG 58.726 50.000 0.00 0.00 0.00 4.85
1525 1564 5.779241 TTCATCTGGGAAGTAAAGGTGAT 57.221 39.130 0.00 0.00 31.38 3.06
1526 1565 5.014123 ACATTCATCTGGGAAGTAAAGGTGA 59.986 40.000 0.00 0.00 29.25 4.02
1527 1566 5.256474 ACATTCATCTGGGAAGTAAAGGTG 58.744 41.667 0.00 0.00 0.00 4.00
1528 1567 5.014123 TGACATTCATCTGGGAAGTAAAGGT 59.986 40.000 0.00 0.00 0.00 3.50
1569 1621 1.187087 AGTAGCCCAAGGACGAGAAG 58.813 55.000 0.00 0.00 0.00 2.85
1578 1630 3.195698 GGCGCGAAGTAGCCCAAG 61.196 66.667 12.10 0.00 44.87 3.61
1607 1659 2.103153 ACCTTGAGAAGTCCAGGACA 57.897 50.000 22.31 0.00 37.76 4.02
1608 1660 3.515901 ACATACCTTGAGAAGTCCAGGAC 59.484 47.826 12.25 12.25 37.76 3.85
1647 1699 3.585862 TCTCACTCCATACGAAAACAGC 58.414 45.455 0.00 0.00 0.00 4.40
1684 1738 6.483307 CCAAATAGAGAATTATGCCGAGACAA 59.517 38.462 0.00 0.00 0.00 3.18
1744 1798 9.932207 AGTCTCAGATGATGAATCATAATCTTC 57.068 33.333 18.26 10.46 46.84 2.87
1761 1815 6.162079 CACATGTACACTCAAAGTCTCAGAT 58.838 40.000 0.00 0.00 0.00 2.90
1887 1941 6.307031 TGCGAATTGTTTACTAACATGTGT 57.693 33.333 0.00 0.00 43.43 3.72
1915 1969 0.394565 GTGGTGGTTGAGAGCTCACT 59.605 55.000 17.77 0.00 39.66 3.41
1921 1975 0.035458 GACTGGGTGGTGGTTGAGAG 59.965 60.000 0.00 0.00 0.00 3.20
1922 1976 1.415672 GGACTGGGTGGTGGTTGAGA 61.416 60.000 0.00 0.00 0.00 3.27
1944 2001 2.869233 AATGTCTGCAAAACACGCTT 57.131 40.000 3.85 0.00 0.00 4.68
1948 2005 8.603181 AGTTTTATCAAAATGTCTGCAAAACAC 58.397 29.630 3.85 0.00 37.19 3.32
2192 2265 0.532573 GAGGAGCGATGAAGGTGACA 59.467 55.000 0.00 0.00 0.00 3.58
2369 3055 7.799447 GCATGTTGTTGTCAAATACGTAACTTA 59.201 33.333 0.00 0.00 35.20 2.24
2423 3111 3.320256 TGTAATGCAGACAATGTTTGCCA 59.680 39.130 23.24 12.64 41.95 4.92
2510 3214 6.183360 CGCTAGTAGTTGAGAGACCAAAAATG 60.183 42.308 0.00 0.00 0.00 2.32
2530 3235 5.102313 GGGGTCAAAATTTGATTTCGCTAG 58.898 41.667 11.87 0.00 42.47 3.42
2544 3249 9.551339 TTCTAGTAATAGAGTTAGGGGTCAAAA 57.449 33.333 0.00 0.00 0.00 2.44
2562 3268 7.996644 ACTTTTGTGACCAAGGATTTCTAGTAA 59.003 33.333 0.00 0.00 0.00 2.24
2932 3652 2.628178 GGGCTCCACATATTTTAAGGCC 59.372 50.000 0.00 0.00 41.44 5.19
2995 3719 9.278011 AGATTTTGGAAACCCATGGATAAATAA 57.722 29.630 15.22 0.00 32.92 1.40
3000 3724 7.310983 GGAAAAGATTTTGGAAACCCATGGATA 60.311 37.037 15.22 0.00 32.92 2.59
3007 3731 6.061441 ACAATGGAAAAGATTTTGGAAACCC 58.939 36.000 0.00 0.00 0.00 4.11
3137 3862 2.224066 CCTAGTTAGCATCGAGGGTTGG 60.224 54.545 7.23 0.00 0.00 3.77
3146 3904 1.409427 AGTGGCGACCTAGTTAGCATC 59.591 52.381 0.00 0.00 0.00 3.91
3207 3966 4.736126 AAAATAGGATTTTTGGAGGGCG 57.264 40.909 0.00 0.00 0.00 6.13
3208 3967 7.182817 AGTTAAAATAGGATTTTTGGAGGGC 57.817 36.000 2.73 0.00 31.54 5.19
3309 4068 2.424956 GAGGGCAGGCTCAAAACATAAG 59.575 50.000 0.00 0.00 0.00 1.73
3310 4069 2.446435 GAGGGCAGGCTCAAAACATAA 58.554 47.619 0.00 0.00 0.00 1.90
3348 4109 0.110295 ACATGTGCTAACCAGTGGCA 59.890 50.000 9.78 0.00 0.00 4.92
3355 4116 4.142469 GGTGGTTTCATACATGTGCTAACC 60.142 45.833 9.11 15.78 35.33 2.85
3356 4117 4.436852 CGGTGGTTTCATACATGTGCTAAC 60.437 45.833 9.11 7.41 0.00 2.34
3360 4121 1.467374 GCGGTGGTTTCATACATGTGC 60.467 52.381 9.11 0.00 0.00 4.57
3658 4424 2.047274 CGTGGAACATCAGGGCGT 60.047 61.111 0.00 0.00 44.52 5.68
3659 4425 3.499737 GCGTGGAACATCAGGGCG 61.500 66.667 0.00 0.00 44.52 6.13
3716 4482 4.335874 TGACGAATCTACTAGAGAGCCAAC 59.664 45.833 0.00 0.00 37.70 3.77
3730 4496 5.125900 TGAATCATTTGGCATTGACGAATCT 59.874 36.000 1.66 0.00 0.00 2.40
3731 4497 5.342433 TGAATCATTTGGCATTGACGAATC 58.658 37.500 1.66 0.00 0.00 2.52
3758 4524 0.108424 GCTGCCTTCGAGACTGATGT 60.108 55.000 0.00 0.00 0.00 3.06
3765 4531 1.669115 GCTGTTGCTGCCTTCGAGA 60.669 57.895 0.00 0.00 36.03 4.04
3787 4553 3.101437 ACTGGTGTCAATGGTATCGGTA 58.899 45.455 0.00 0.00 0.00 4.02
3788 4554 1.906574 ACTGGTGTCAATGGTATCGGT 59.093 47.619 0.00 0.00 0.00 4.69
3794 4563 1.600636 CGCCACTGGTGTCAATGGT 60.601 57.895 0.00 0.00 41.92 3.55
3807 4576 1.904852 CTGTCACTGCATCACGCCAC 61.905 60.000 0.00 0.00 41.33 5.01
4016 4889 9.232473 GACCCTGTTGAAACTTTAGATCTTATT 57.768 33.333 0.00 0.00 0.00 1.40
4073 4946 7.769220 AGGTTCAAGAAATATTGAGATGCAAG 58.231 34.615 0.00 0.00 40.16 4.01
4092 4965 2.445145 TGGGGTTTCATCAGAAGGTTCA 59.555 45.455 0.00 0.00 34.71 3.18
4093 4966 3.154827 TGGGGTTTCATCAGAAGGTTC 57.845 47.619 0.00 0.00 34.71 3.62
4114 4987 7.162761 TCTGACCTATTTTCGTTGGTTCATTA 58.837 34.615 0.00 0.00 32.30 1.90
4126 4999 8.553696 TCGTGTTTTAACTTCTGACCTATTTTC 58.446 33.333 0.00 0.00 0.00 2.29
4152 5026 7.176690 CCTTGTAAAAATTGTGTCCTAGGTCAT 59.823 37.037 12.01 0.00 0.00 3.06
4193 5067 8.842358 TTCTTGTATAGTTTTCGGTGAAAGAT 57.158 30.769 0.00 0.00 32.93 2.40
4216 5090 6.805760 GCTTTGATCATTGGTTCTCTCTTTTC 59.194 38.462 0.00 0.00 0.00 2.29
4217 5091 6.266103 TGCTTTGATCATTGGTTCTCTCTTTT 59.734 34.615 0.00 0.00 0.00 2.27
4221 5095 5.633830 TTGCTTTGATCATTGGTTCTCTC 57.366 39.130 0.00 0.00 0.00 3.20
4222 5096 5.537674 AGTTTGCTTTGATCATTGGTTCTCT 59.462 36.000 0.00 0.00 0.00 3.10
4266 5142 1.066143 CCTAAGCTTCATGGTGACGGT 60.066 52.381 0.00 0.00 0.00 4.83
4267 5143 1.656652 CCTAAGCTTCATGGTGACGG 58.343 55.000 0.00 0.00 0.00 4.79
4328 5212 6.210078 CGTGGAGAGGAGACTATTGTATTTC 58.790 44.000 0.00 0.00 44.43 2.17
4337 5221 0.394488 CTGCCGTGGAGAGGAGACTA 60.394 60.000 0.00 0.00 44.43 2.59
4344 5228 0.811616 GTTATGGCTGCCGTGGAGAG 60.812 60.000 23.37 0.00 0.00 3.20
4353 5237 1.939974 TCTCGTCATGTTATGGCTGC 58.060 50.000 0.00 0.00 31.27 5.25
4398 5282 4.557205 CCTTGGCGGTAGAGATACATAAC 58.443 47.826 0.00 0.00 0.00 1.89
4439 5323 9.868277 GGATCTCTATGAGGTTTATATGTCTTG 57.132 37.037 0.00 0.00 0.00 3.02
4457 5341 3.021695 CACGGGTAAGTGTGGATCTCTA 58.978 50.000 0.00 0.00 37.35 2.43
4504 5388 6.128007 CGATTTTTGCCATACTAGTCTTTGGT 60.128 38.462 16.53 1.38 0.00 3.67
4515 5399 1.400494 AGGACGCGATTTTTGCCATAC 59.600 47.619 15.93 0.00 0.00 2.39
4597 5487 3.003275 CCTACAATGCGTCTGTTGTGTTT 59.997 43.478 1.34 0.00 38.84 2.83
4662 5562 1.149101 ACCATTGTCACCCCAAGAGT 58.851 50.000 0.00 0.00 0.00 3.24
4785 5696 7.201513 CCACAAATTACACAAAACACAGGAAAG 60.202 37.037 0.00 0.00 0.00 2.62
4789 5700 5.655488 TCCACAAATTACACAAAACACAGG 58.345 37.500 0.00 0.00 0.00 4.00
4799 5710 9.346725 GAGAAGAAATCAATCCACAAATTACAC 57.653 33.333 0.00 0.00 0.00 2.90
4879 5790 8.528044 AGAAAGGTTACAAAATAACTTCACCA 57.472 30.769 0.00 0.00 0.00 4.17
4880 5791 9.811995 AAAGAAAGGTTACAAAATAACTTCACC 57.188 29.630 0.00 0.00 0.00 4.02
4927 5841 2.442272 GAGCCGGGCTAGACTGGA 60.442 66.667 28.99 0.00 39.88 3.86
4988 5903 2.290464 CGAGACATAGTCGTTCCCTCT 58.710 52.381 0.00 0.00 37.67 3.69
4989 5904 1.268640 GCGAGACATAGTCGTTCCCTC 60.269 57.143 0.00 0.00 39.69 4.30
4990 5905 0.739561 GCGAGACATAGTCGTTCCCT 59.260 55.000 0.00 0.00 39.69 4.20
4991 5906 0.739561 AGCGAGACATAGTCGTTCCC 59.260 55.000 0.00 0.00 39.69 3.97
4992 5907 1.132643 ACAGCGAGACATAGTCGTTCC 59.867 52.381 0.00 0.00 39.69 3.62
4993 5908 2.546195 ACAGCGAGACATAGTCGTTC 57.454 50.000 0.00 0.00 39.69 3.95
4994 5909 3.731264 GCTTACAGCGAGACATAGTCGTT 60.731 47.826 0.00 0.00 39.69 3.85
4995 5910 2.223294 GCTTACAGCGAGACATAGTCGT 60.223 50.000 0.00 0.00 39.69 4.34
4996 5911 2.376956 GCTTACAGCGAGACATAGTCG 58.623 52.381 0.00 0.00 37.67 4.18
5008 5923 3.183373 GCTGATTATGTCTCGCTTACAGC 59.817 47.826 0.00 0.00 40.55 4.40
5009 5924 4.615949 AGCTGATTATGTCTCGCTTACAG 58.384 43.478 0.00 0.00 32.81 2.74
5010 5925 4.097892 TGAGCTGATTATGTCTCGCTTACA 59.902 41.667 0.00 0.00 35.46 2.41
5011 5926 4.611943 TGAGCTGATTATGTCTCGCTTAC 58.388 43.478 0.00 0.00 35.46 2.34
5012 5927 4.918810 TGAGCTGATTATGTCTCGCTTA 57.081 40.909 0.00 0.00 35.46 3.09
5013 5928 3.808466 TGAGCTGATTATGTCTCGCTT 57.192 42.857 0.00 0.00 35.46 4.68
5014 5929 3.715495 CTTGAGCTGATTATGTCTCGCT 58.285 45.455 0.00 0.00 37.13 4.93
5015 5930 2.220593 GCTTGAGCTGATTATGTCTCGC 59.779 50.000 0.00 0.00 38.21 5.03
5016 5931 3.451526 TGCTTGAGCTGATTATGTCTCG 58.548 45.455 4.44 0.00 42.66 4.04
5017 5932 4.691175 TCTGCTTGAGCTGATTATGTCTC 58.309 43.478 8.28 0.00 42.71 3.36
5018 5933 4.750021 TCTGCTTGAGCTGATTATGTCT 57.250 40.909 8.28 0.00 42.71 3.41
5019 5934 5.406767 CTTCTGCTTGAGCTGATTATGTC 57.593 43.478 12.41 0.00 45.95 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.